Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280010436.01.T01 | KEH38868.1 | 86.885 | 122 | 9 | 2 | 1 | 116 | 97 | 217 | 3.42E-67 | 215 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280010436.01.T01 | A3AWH5 | 61.905 | 63 | 23 | 1 | 1 | 63 | 22 | 83 | 8.95E-20 | 85.1 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280010436.01.T01 | A0A072VAU2 | 86.885 | 122 | 9 | 2 | 1 | 116 | 97 | 217 | 2.42e-67 | 216 |
| MsG0280010436.01.T01 | A0A072VBV5 | 86.885 | 122 | 9 | 2 | 1 | 116 | 97 | 217 | 1.63e-67 | 215 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048347.01 | MsG0280010436.01 | 0.801064 | 1.074127e-48 | 5.081634e-46 |
| MsG0080048348.01 | MsG0280010436.01 | 0.809570 | 1.772854e-50 | 1.044586e-47 |
| MsG0180000930.01 | MsG0280010436.01 | 0.809716 | 1.648909e-50 | 9.753360e-48 |
| MsG0180005357.01 | MsG0280010436.01 | 0.817024 | 4.086294e-52 | 2.942403e-49 |
| MsG0280010436.01 | MsG0380011613.01 | 0.833848 | 4.213507e-56 | 4.912833e-53 |
| MsG0280010436.01 | MsG0380016129.01 | 0.829953 | 3.856827e-55 | 4.006972e-52 |
| MsG0280010436.01 | MsG0480019106.01 | 0.819063 | 1.413739e-52 | 1.076667e-49 |
| MsG0280010436.01 | MsG0480019107.01 | 0.829917 | 3.935669e-55 | 4.084855e-52 |
| MsG0280010436.01 | MsG0480022735.01 | 0.805405 | 1.356217e-49 | 7.169181e-47 |
| MsG0280010436.01 | MsG0480022736.01 | 0.846296 | 2.374182e-59 | 4.067534e-56 |
| MsG0280010436.01 | MsG0580024218.01 | 0.805318 | 1.414444e-49 | 7.460080e-47 |
| MsG0280010436.01 | MsG0580025180.01 | 0.828545 | 8.470397e-55 | 8.445610e-52 |
| MsG0280010436.01 | MsG0580029782.01 | 0.811089 | 8.334254e-51 | 5.111788e-48 |
| MsG0280010436.01 | MsG0780039968.01 | 0.815565 | 8.663239e-52 | 5.993709e-49 |
| MsG0280010436.01 | MsG0780041556.01 | 0.807821 | 4.191829e-50 | 2.358138e-47 |
| MsG0280010436.01 | MsG0880042810.01 | 0.819678 | 1.023714e-52 | 7.930569e-50 |
| MsG0280010436.01 | MsG0880043185.01 | 0.805945 | 1.044900e-49 | 5.600643e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280010436.01.T01 | MTR_2g084230 | 86.885 | 122 | 9 | 2 | 1 | 116 | 97 | 217 | 4.15e-71 | 215 |
| MsG0280010436.01.T01 | MTR_2g084230 | 86.885 | 122 | 9 | 2 | 1 | 116 | 97 | 217 | 6.14e-71 | 216 |
| MsG0280010436.01.T01 | MTR_8g086410 | 81.944 | 72 | 12 | 1 | 1 | 72 | 109 | 179 | 2.39e-33 | 120 |
| MsG0280010436.01.T01 | MTR_8g086410 | 81.944 | 72 | 12 | 1 | 1 | 72 | 111 | 181 | 2.40e-33 | 120 |
| MsG0280010436.01.T01 | MTR_2g016220 | 68.182 | 88 | 25 | 2 | 1 | 86 | 89 | 175 | 9.20e-33 | 117 |
| MsG0280010436.01.T01 | MTR_2g016220 | 68.182 | 88 | 25 | 2 | 1 | 86 | 89 | 175 | 1.24e-32 | 117 |
| MsG0280010436.01.T01 | MTR_8g086410 | 74.684 | 79 | 12 | 2 | 1 | 72 | 111 | 188 | 9.65e-31 | 113 |
| MsG0280010436.01.T01 | MTR_2g016220 | 65.217 | 92 | 25 | 3 | 1 | 86 | 89 | 179 | 1.46e-30 | 112 |
| MsG0280010436.01.T01 | MTR_7g069660 | 71.642 | 67 | 18 | 1 | 1 | 67 | 71 | 136 | 3.07e-28 | 105 |
| MsG0280010436.01.T01 | MTR_2g023580 | 59.722 | 72 | 28 | 1 | 1 | 72 | 55 | 125 | 9.65e-24 | 91.7 |
| MsG0280010436.01.T01 | MTR_0223s0040 | 49.485 | 97 | 44 | 3 | 1 | 93 | 18 | 113 | 7.03e-22 | 87.8 |
| MsG0280010436.01.T01 | MTR_1g112370 | 54.545 | 77 | 31 | 3 | 1 | 74 | 22 | 97 | 2.57e-20 | 84.3 |
| MsG0280010436.01.T01 | MTR_1g021520 | 60.317 | 63 | 23 | 2 | 2 | 63 | 127 | 188 | 3.60e-17 | 75.1 |
| MsG0280010436.01.T01 | MTR_7g115530 | 55.072 | 69 | 29 | 2 | 2 | 69 | 219 | 286 | 5.03e-17 | 75.1 |
| MsG0280010436.01.T01 | MTR_7g115530 | 45.455 | 88 | 46 | 2 | 2 | 88 | 219 | 305 | 7.35e-17 | 74.7 |
| MsG0280010436.01.T01 | MTR_7g115530 | 45.455 | 88 | 46 | 2 | 2 | 88 | 219 | 305 | 8.45e-17 | 75.1 |
| MsG0280010436.01.T01 | MTR_3g450310 | 57.895 | 57 | 23 | 1 | 2 | 58 | 20 | 75 | 9.48e-17 | 72.8 |
| MsG0280010436.01.T01 | MTR_7g115530 | 59.649 | 57 | 22 | 1 | 2 | 58 | 219 | 274 | 1.72e-16 | 73.9 |
| MsG0280010436.01.T01 | MTR_3g064840 | 58.333 | 60 | 24 | 1 | 2 | 61 | 275 | 333 | 1.75e-16 | 74.3 |
| MsG0280010436.01.T01 | MTR_5g029470 | 61.404 | 57 | 21 | 1 | 2 | 58 | 220 | 275 | 2.05e-16 | 73.9 |
| MsG0280010436.01.T01 | MTR_6g071625 | 61.404 | 57 | 21 | 1 | 2 | 58 | 203 | 258 | 2.08e-16 | 73.6 |
| MsG0280010436.01.T01 | MTR_7g093030 | 47.253 | 91 | 39 | 4 | 3 | 92 | 214 | 296 | 2.59e-16 | 73.6 |
| MsG0280010436.01.T01 | MTR_1g080330 | 59.649 | 57 | 22 | 1 | 2 | 58 | 176 | 231 | 3.21e-16 | 72.4 |
| MsG0280010436.01.T01 | MTR_1g080330 | 59.649 | 57 | 22 | 1 | 2 | 58 | 176 | 231 | 3.46e-16 | 73.2 |
| MsG0280010436.01.T01 | MTR_7g093030 | 48.315 | 89 | 37 | 4 | 3 | 90 | 214 | 294 | 3.99e-16 | 72.4 |
| MsG0280010436.01.T01 | MTR_8g066310 | 56.667 | 60 | 25 | 1 | 2 | 61 | 174 | 232 | 4.28e-16 | 72.8 |
| MsG0280010436.01.T01 | MTR_7g098250 | 57.895 | 57 | 23 | 1 | 2 | 58 | 263 | 318 | 6.27e-16 | 72.8 |
| MsG0280010436.01.T01 | MTR_2g027800 | 40.566 | 106 | 52 | 3 | 2 | 107 | 40 | 134 | 5.10e-15 | 69.7 |
| MsG0280010436.01.T01 | MTR_7g115530 | 60.377 | 53 | 20 | 1 | 2 | 54 | 219 | 270 | 8.35e-15 | 68.9 |
| MsG0280010436.01.T01 | MTR_7g115530 | 62.745 | 51 | 18 | 1 | 2 | 52 | 219 | 268 | 1.22e-14 | 68.2 |
| MsG0280010436.01.T01 | MTR_1g053835 | 52.941 | 68 | 30 | 2 | 3 | 69 | 260 | 326 | 2.95e-14 | 67.8 |
| MsG0280010436.01.T01 | MTR_1g053830 | 46.053 | 76 | 39 | 2 | 3 | 77 | 20 | 94 | 3.31e-14 | 63.5 |
| MsG0280010436.01.T01 | MTR_1g090670 | 38.679 | 106 | 51 | 3 | 2 | 107 | 45 | 136 | 5.09e-14 | 66.6 |
| MsG0280010436.01.T01 | MTR_6g032990 | 55.556 | 54 | 23 | 1 | 2 | 55 | 43 | 95 | 5.20e-14 | 67.0 |
| MsG0280010436.01.T01 | MTR_2g027800 | 57.407 | 54 | 22 | 1 | 2 | 55 | 40 | 92 | 6.08e-14 | 66.6 |
| MsG0280010436.01.T01 | MTR_2g086450 | 52.632 | 57 | 26 | 1 | 2 | 58 | 46 | 101 | 6.89e-14 | 66.6 |
| MsG0280010436.01.T01 | MTR_5g027440 | 57.407 | 54 | 22 | 1 | 2 | 55 | 26 | 78 | 1.15e-13 | 65.5 |
| MsG0280010436.01.T01 | MTR_7g088070 | 55.738 | 61 | 25 | 2 | 3 | 62 | 52 | 111 | 1.43e-12 | 62.4 |
| MsG0280010436.01.T01 | MTR_7g088070 | 55.738 | 61 | 25 | 2 | 3 | 62 | 52 | 111 | 1.44e-12 | 62.4 |
| MsG0280010436.01.T01 | MTR_5g041350 | 46.296 | 54 | 28 | 1 | 2 | 55 | 16 | 68 | 3.48e-12 | 62.0 |
| MsG0280010436.01.T01 | MTR_6g444980 | 49.123 | 57 | 28 | 1 | 2 | 58 | 36 | 91 | 8.37e-12 | 60.8 |
| MsG0280010436.01.T01 | MTR_6g444980 | 50.000 | 54 | 26 | 1 | 2 | 55 | 36 | 88 | 9.02e-12 | 60.5 |
| MsG0280010436.01.T01 | MTR_2g027860 | 55.357 | 56 | 24 | 1 | 3 | 58 | 51 | 105 | 9.08e-12 | 60.5 |
| MsG0280010436.01.T01 | MTR_1g053800 | 53.704 | 54 | 24 | 1 | 3 | 56 | 179 | 231 | 2.27e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280010436.01.T01 | AT2G38300 | 71.642 | 67 | 18 | 1 | 1 | 67 | 54 | 119 | 1.65e-28 | 106 |
| MsG0280010436.01.T01 | AT2G42660 | 59.770 | 87 | 23 | 3 | 1 | 82 | 50 | 129 | 1.51e-26 | 99.4 |
| MsG0280010436.01.T01 | AT2G40260 | 70.312 | 64 | 18 | 1 | 1 | 64 | 82 | 144 | 1.00e-24 | 97.1 |
| MsG0280010436.01.T01 | AT4G04605 | 57.692 | 78 | 30 | 2 | 1 | 76 | 14 | 90 | 3.32e-23 | 90.1 |
| MsG0280010436.01.T01 | AT2G02060 | 69.091 | 55 | 16 | 1 | 1 | 55 | 29 | 82 | 1.18e-20 | 84.0 |
| MsG0280010436.01.T01 | AT2G02060 | 69.091 | 55 | 16 | 1 | 1 | 55 | 29 | 82 | 1.18e-20 | 84.0 |
| MsG0280010436.01.T01 | AT1G14600 | 64.407 | 59 | 20 | 1 | 1 | 59 | 23 | 80 | 1.41e-20 | 84.0 |
| MsG0280010436.01.T01 | AT4G04580 | 53.968 | 63 | 28 | 1 | 2 | 64 | 15 | 76 | 2.82e-18 | 75.9 |
| MsG0280010436.01.T01 | AT5G42630 | 58.065 | 62 | 25 | 1 | 2 | 63 | 106 | 166 | 5.29e-18 | 76.3 |
| MsG0280010436.01.T01 | AT5G42630 | 58.065 | 62 | 25 | 1 | 2 | 63 | 106 | 166 | 1.24e-17 | 76.3 |
| MsG0280010436.01.T01 | AT4G04555 | 53.226 | 62 | 28 | 1 | 1 | 62 | 14 | 74 | 9.54e-17 | 70.5 |
| MsG0280010436.01.T01 | AT1G32240 | 54.545 | 66 | 29 | 1 | 2 | 67 | 214 | 278 | 1.08e-16 | 74.7 |
| MsG0280010436.01.T01 | AT1G32240 | 54.545 | 66 | 29 | 1 | 2 | 67 | 214 | 278 | 1.47e-16 | 74.3 |
| MsG0280010436.01.T01 | AT5G16560 | 61.404 | 57 | 21 | 1 | 2 | 58 | 220 | 275 | 2.37e-16 | 73.9 |
| MsG0280010436.01.T01 | AT4G17695 | 50.000 | 74 | 36 | 1 | 2 | 75 | 165 | 237 | 4.03e-16 | 72.8 |
| MsG0280010436.01.T01 | AT4G28610 | 42.045 | 88 | 48 | 2 | 3 | 88 | 227 | 313 | 1.57e-15 | 71.6 |
| MsG0280010436.01.T01 | AT5G45580 | 44.706 | 85 | 41 | 2 | 2 | 86 | 8 | 86 | 2.63e-15 | 69.7 |
| MsG0280010436.01.T01 | AT5G45580 | 44.706 | 85 | 41 | 2 | 2 | 86 | 24 | 102 | 2.99e-15 | 70.1 |
| MsG0280010436.01.T01 | AT3G04450 | 45.205 | 73 | 34 | 2 | 3 | 70 | 240 | 311 | 2.13e-14 | 67.8 |
| MsG0280010436.01.T01 | AT3G13040 | 62.264 | 53 | 19 | 1 | 3 | 55 | 243 | 294 | 2.85e-14 | 67.8 |
| MsG0280010436.01.T01 | AT3G13040 | 62.264 | 53 | 19 | 1 | 3 | 55 | 243 | 294 | 2.85e-14 | 67.8 |
| MsG0280010436.01.T01 | AT3G13040 | 62.264 | 53 | 19 | 1 | 3 | 55 | 243 | 294 | 2.85e-14 | 67.8 |
| MsG0280010436.01.T01 | AT5G29000 | 55.357 | 56 | 24 | 1 | 3 | 58 | 233 | 287 | 3.22e-14 | 67.4 |
| MsG0280010436.01.T01 | AT5G29000 | 55.357 | 56 | 24 | 1 | 3 | 58 | 190 | 244 | 3.70e-14 | 67.4 |
| MsG0280010436.01.T01 | AT5G29000 | 55.357 | 56 | 24 | 1 | 3 | 58 | 190 | 244 | 3.70e-14 | 67.4 |
| MsG0280010436.01.T01 | AT5G29000 | 55.357 | 56 | 24 | 1 | 3 | 58 | 233 | 287 | 4.03e-14 | 67.4 |
| MsG0280010436.01.T01 | AT3G04450 | 51.786 | 56 | 26 | 1 | 3 | 58 | 240 | 294 | 4.89e-14 | 67.4 |
| MsG0280010436.01.T01 | AT3G04450 | 51.786 | 56 | 26 | 1 | 3 | 58 | 200 | 254 | 5.23e-14 | 67.0 |
| MsG0280010436.01.T01 | AT3G04450 | 51.786 | 56 | 26 | 1 | 3 | 58 | 200 | 254 | 5.23e-14 | 67.0 |
| MsG0280010436.01.T01 | AT5G18240 | 41.121 | 107 | 53 | 5 | 2 | 106 | 46 | 144 | 5.23e-14 | 67.0 |
| MsG0280010436.01.T01 | AT5G18240 | 41.121 | 107 | 53 | 5 | 2 | 106 | 46 | 144 | 5.23e-14 | 67.0 |
| MsG0280010436.01.T01 | AT5G18240 | 41.121 | 107 | 53 | 5 | 2 | 106 | 46 | 144 | 6.04e-14 | 67.0 |
| MsG0280010436.01.T01 | AT5G18240 | 41.121 | 107 | 53 | 5 | 2 | 106 | 46 | 144 | 6.17e-14 | 67.0 |
| MsG0280010436.01.T01 | AT5G18240 | 41.121 | 107 | 53 | 5 | 2 | 106 | 46 | 144 | 6.17e-14 | 67.0 |
| MsG0280010436.01.T01 | AT3G04030 | 50.000 | 60 | 28 | 2 | 2 | 60 | 46 | 104 | 1.84e-13 | 65.5 |
| MsG0280010436.01.T01 | AT3G04030 | 50.000 | 60 | 28 | 2 | 2 | 60 | 46 | 104 | 1.90e-13 | 65.5 |
| MsG0280010436.01.T01 | AT3G04030 | 50.000 | 60 | 27 | 2 | 2 | 60 | 46 | 103 | 2.86e-13 | 65.1 |
| MsG0280010436.01.T01 | AT2G20400 | 55.357 | 56 | 24 | 1 | 3 | 58 | 233 | 287 | 6.85e-13 | 63.9 |
| MsG0280010436.01.T01 | AT2G20400 | 55.357 | 56 | 24 | 1 | 3 | 58 | 233 | 287 | 6.92e-13 | 63.9 |
| MsG0280010436.01.T01 | AT5G06800 | 52.459 | 61 | 27 | 2 | 3 | 62 | 194 | 253 | 1.18e-12 | 62.8 |
| MsG0280010436.01.T01 | AT5G06800 | 53.571 | 56 | 25 | 1 | 3 | 58 | 194 | 248 | 2.04e-12 | 62.8 |
| MsG0280010436.01.T01 | AT5G06800 | 53.571 | 56 | 25 | 1 | 3 | 58 | 194 | 248 | 2.15e-12 | 62.4 |
| MsG0280010436.01.T01 | AT3G12730 | 51.852 | 54 | 25 | 1 | 2 | 55 | 24 | 76 | 2.26e-12 | 61.6 |
| MsG0280010436.01.T01 | AT1G69580 | 36.842 | 95 | 54 | 3 | 2 | 91 | 35 | 128 | 2.83e-12 | 62.0 |
| MsG0280010436.01.T01 | AT1G69580 | 36.842 | 95 | 54 | 3 | 2 | 91 | 35 | 128 | 2.88e-12 | 62.0 |
| MsG0280010436.01.T01 | AT2G01060 | 48.718 | 78 | 26 | 3 | 3 | 67 | 17 | 93 | 4.05e-12 | 61.2 |
| MsG0280010436.01.T01 | AT3G24120 | 50.000 | 54 | 26 | 1 | 2 | 55 | 42 | 94 | 5.34e-12 | 61.2 |
| MsG0280010436.01.T01 | AT4G13640 | 50.000 | 54 | 26 | 1 | 2 | 55 | 38 | 90 | 5.62e-12 | 61.2 |
| MsG0280010436.01.T01 | AT3G24120 | 50.000 | 54 | 26 | 1 | 2 | 55 | 42 | 94 | 5.64e-12 | 61.2 |
| MsG0280010436.01.T01 | AT2G06020 | 49.180 | 61 | 30 | 1 | 3 | 63 | 88 | 147 | 5.72e-12 | 61.2 |
| MsG0280010436.01.T01 | AT4G13640 | 50.000 | 54 | 26 | 1 | 2 | 55 | 38 | 90 | 5.93e-12 | 60.8 |
| MsG0280010436.01.T01 | AT1G79430 | 49.123 | 57 | 28 | 1 | 2 | 58 | 35 | 90 | 9.62e-12 | 60.5 |
Find 22 sgRNAs with CRISPR-Local
Find 95 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATTAACTGGAGAACTAAC+TGG | 0.305613 | 2:-69517454 | None:intergenic |
| GCAAGGAAGGCATCACATTA+TGG | 0.348737 | 2:+69518133 | MsG0280010436.01.T01:CDS |
| GTCCTCTCACATTCATTAAC+TGG | 0.352977 | 2:-69517466 | None:intergenic |
| TCAAAGCTCATGACACTTCA+AGG | 0.388453 | 2:+69518237 | MsG0280010436.01.T01:CDS |
| ACATGTGAAGAGTCATTTGC+AGG | 0.413814 | 2:+69517499 | MsG0280010436.01.T01:CDS |
| GTGCATGCTGTTGAGAGGCT+TGG | 0.454830 | 2:+69516848 | MsG0280010436.01.T01:CDS |
| CATCACATTATGGATATGTA+TGG | 0.459114 | 2:+69518143 | MsG0280010436.01.T01:CDS |
| ACAAAAGATAAATGAAGATC+AGG | 0.462114 | 2:-69516827 | None:intergenic |
| CATGCTGTTGAGAGGCTTGG+AGG | 0.487742 | 2:+69516851 | MsG0280010436.01.T01:CDS |
| CGAAAATGCCTAGGCTTCGT+TGG | 0.491348 | 2:+69516801 | None:intergenic |
| AAAATAGAGCAATGCAAGGA+AGG | 0.540544 | 2:+69518120 | MsG0280010436.01.T01:CDS |
| TATGATGGTTGTTTCAGTAG+AGG | 0.540634 | 2:-69518206 | None:intergenic |
| GCTTTGATTTCATTATATGA+TGG | 0.554601 | 2:-69518221 | None:intergenic |
| TCAGGAGTCCAACGAAGCCT+AGG | 0.559435 | 2:-69516809 | None:intergenic |
| ATGGATATGTATGGACACTT+TGG | 0.587338 | 2:+69518152 | MsG0280010436.01.T01:CDS |
| CATTAACTGGAGAACTAACT+GGG | 0.588351 | 2:-69517453 | None:intergenic |
| ATGTGAGGTCGAAAATGCCT+AGG | 0.605149 | 2:+69516792 | None:intergenic |
| ATGCTGTTGAGAGGCTTGGA+GGG | 0.612873 | 2:+69516852 | MsG0280010436.01.T01:CDS |
| AAGCTTGATGAGTCTGGCCA+AGG | 0.633707 | 2:+69517964 | MsG0280010436.01.T01:CDS |
| TGTTTCAGTAGAGGAGACGA+TGG | 0.646955 | 2:-69518197 | None:intergenic |
| CTCCAGTTAATGAATGTGAG+AGG | 0.648001 | 2:+69517464 | MsG0280010436.01.T01:CDS |
| GTTTCAGTAGAGGAGACGAT+GGG | 0.648534 | 2:-69518196 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACATAATTTAGTGTAATTAT+AGG | - | Chr2:69517678-69517697 | None:intergenic | 15.0% |
| !!! | AGATTAATTGTTTTTGTAAT+GGG | + | Chr2:69517773-69517792 | MsG0280010436.01.T01:intron | 15.0% |
| !!! | CGTTTTAATTATGATTTTTT+TGG | + | Chr2:69517918-69517937 | MsG0280010436.01.T01:intron | 15.0% |
| !!! | TAGATTAATTGTTTTTGTAA+TGG | + | Chr2:69517772-69517791 | MsG0280010436.01.T01:intron | 15.0% |
| !!! | TTTAATTATGATTTTTTTGG+AGG | + | Chr2:69517921-69517940 | MsG0280010436.01.T01:intron | 15.0% |
| !! | CACTTAATCTTATATAGATA+TGG | + | Chr2:69517355-69517374 | MsG0280010436.01.T01:intron | 20.0% |
| !! | CATAAATTTATCATTACCTT+TGG | + | Chr2:69516911-69516930 | MsG0280010436.01.T01:intron | 20.0% |
| !! | GGTAATATATATTCTTGTAT+AGG | + | Chr2:69517520-69517539 | MsG0280010436.01.T01:intron | 20.0% |
| !! | TAACAATATTGGATATATGT+AGG | + | Chr2:69517423-69517442 | MsG0280010436.01.T01:intron | 20.0% |
| !!! | TGATTTTGCTAACAATATTA+AGG | - | Chr2:69518002-69518021 | None:intergenic | 20.0% |
| ! | AAAAATGAGAAACAGTTGAT+AGG | - | Chr2:69517301-69517320 | None:intergenic | 25.0% |
| ! | AATATAAATCATGCATGTGA+TGG | - | Chr2:69518070-69518089 | None:intergenic | 25.0% |
| ! | AATTCAGAGATCAATATTGT+CGG | - | Chr2:69517152-69517171 | None:intergenic | 25.0% |
| ! | ACAAAAGATAAATGAAGATC+AGG | - | Chr2:69516830-69516849 | None:intergenic | 25.0% |
| ! | ATTATGAATGTACTAAACGT+TGG | + | Chr2:69517002-69517021 | MsG0280010436.01.T01:intron | 25.0% |
| ! | ATTCAGAATCGTAATACATT+AGG | - | Chr2:69517057-69517076 | None:intergenic | 25.0% |
| ! | GATCTCTGAATTATATCTTT+AGG | + | Chr2:69517160-69517179 | MsG0280010436.01.T01:intron | 25.0% |
| ! | TAATGTATTACGATTCTGAA+TGG | + | Chr2:69517056-69517075 | MsG0280010436.01.T01:intron | 25.0% |
| ! | TTATGAGTTCTGTATTTGTT+GGG | + | Chr2:69516950-69516969 | MsG0280010436.01.T01:intron | 25.0% |
| ! | TTGATTTATGAACAACACTT+AGG | + | Chr2:69517548-69517567 | MsG0280010436.01.T01:intron | 25.0% |
| !! | AAAATGAGAAACAGTTGATA+GGG | - | Chr2:69517300-69517319 | None:intergenic | 25.0% |
| !! | ATCCATATATAGTTTGAGTT+GGG | - | Chr2:69517277-69517296 | None:intergenic | 25.0% |
| !! | GCTTTGATTTCATTATATGA+TGG | - | Chr2:69518224-69518243 | None:intergenic | 25.0% |
| !!! | GGGTTTTTAGTTAACAATAT+TGG | + | Chr2:69517412-69517431 | MsG0280010436.01.T01:intron | 25.0% |
| !!! | TTAATTTGTGTGTTTTCTAC+CGG | + | Chr2:69517207-69517226 | MsG0280010436.01.T01:intron | 25.0% |
| !!! | TTGCATTGCTCTATTTTTTT+GGG | - | Chr2:69518117-69518136 | None:intergenic | 25.0% |
| AAAGAAAAAAGACATCCCAA+AGG | - | Chr2:69517877-69517896 | None:intergenic | 30.0% | |
| AAGAAAAAAGACATCCCAAA+GGG | - | Chr2:69517876-69517895 | None:intergenic | 30.0% | |
| ATTCAGAGATCAATATTGTC+GGG | - | Chr2:69517151-69517170 | None:intergenic | 30.0% | |
| CAAAAAAATAGAGCAATGCA+AGG | + | Chr2:69518116-69518135 | MsG0280010436.01.T01:CDS | 30.0% | |
| CATCACATTATGGATATGTA+TGG | + | Chr2:69518143-69518162 | MsG0280010436.01.T01:CDS | 30.0% | |
| CTTATGAGTTCTGTATTTGT+TGG | + | Chr2:69516949-69516968 | MsG0280010436.01.T01:intron | 30.0% | |
| GATCCATATATAGTTTGAGT+TGG | - | Chr2:69517278-69517297 | None:intergenic | 30.0% | |
| TCTCACATTATTAACGATGT+CGG | + | Chr2:69517703-69517722 | MsG0280010436.01.T01:intron | 30.0% | |
| TTTAGTGTAATTATAGGCGT+CGG | - | Chr2:69517672-69517691 | None:intergenic | 30.0% | |
| ! | GAACTCATAAGTTGTTTCAT+TGG | - | Chr2:69516940-69516959 | None:intergenic | 30.0% |
| !! | CTTTAGGAAGTAGTTCTTTT+TGG | + | Chr2:69517176-69517195 | MsG0280010436.01.T01:intron | 30.0% |
| !! | TAAGGTTCTGAAATATACCT+TGG | - | Chr2:69517984-69518003 | None:intergenic | 30.0% |
| !!! | CTTGCATTGCTCTATTTTTT+TGG | - | Chr2:69518118-69518137 | None:intergenic | 30.0% |
| AAAATAGAGCAATGCAAGGA+AGG | + | Chr2:69518120-69518139 | MsG0280010436.01.T01:CDS | 35.0% | |
| AGTAAAAAGCTTGATGAGTC+TGG | + | Chr2:69517958-69517977 | MsG0280010436.01.T01:CDS | 35.0% | |
| ATGGATATGTATGGACACTT+TGG | + | Chr2:69518152-69518171 | MsG0280010436.01.T01:CDS | 35.0% | |
| CATTAACTGGAGAACTAACT+GGG | - | Chr2:69517456-69517475 | None:intergenic | 35.0% | |
| CTCACATTATTAACGATGTC+GGG | + | Chr2:69517704-69517723 | MsG0280010436.01.T01:intron | 35.0% | |
| GTCCCAACTCAAACTATATA+TGG | + | Chr2:69517272-69517291 | MsG0280010436.01.T01:intron | 35.0% | |
| TCACATTATTAACGATGTCG+GGG | + | Chr2:69517705-69517724 | MsG0280010436.01.T01:intron | 35.0% | |
| TCATTAACTGGAGAACTAAC+TGG | - | Chr2:69517457-69517476 | None:intergenic | 35.0% | |
| TTCAGAGATCAATATTGTCG+GGG | - | Chr2:69517150-69517169 | None:intergenic | 35.0% | |
| ! | ACTCATCAAGCTTTTTACTC+CGG | - | Chr2:69517957-69517976 | None:intergenic | 35.0% |
| ! | GATGTAGTATTTTCCTCTCT+TGG | + | Chr2:69517080-69517099 | MsG0280010436.01.T01:intron | 35.0% |
| ! | TATGATGGTTGTTTCAGTAG+AGG | - | Chr2:69518209-69518228 | None:intergenic | 35.0% |
| !!! | AGTAGTTCTTTTTGGTGTCA+TGG | + | Chr2:69517184-69517203 | MsG0280010436.01.T01:intron | 35.0% |
| AACCCTTGGAAACATCGAAT+AGG | - | Chr2:69518043-69518062 | None:intergenic | 40.0% | |
| AATATTGTCGGGGAGTTCAA+TGG | - | Chr2:69517140-69517159 | None:intergenic | 40.0% | |
| ACATGTGAAGAGTCATTTGC+AGG | + | Chr2:69517499-69517518 | MsG0280010436.01.T01:CDS | 40.0% | |
| AGTTGAGAAACATGCCCTTT+GGG | + | Chr2:69517859-69517878 | MsG0280010436.01.T01:intron | 40.0% | |
| CTCCAGTTAATGAATGTGAG+AGG | + | Chr2:69517464-69517483 | MsG0280010436.01.T01:CDS | 40.0% | |
| GCACATACACTCCTTTGATT+AGG | + | Chr2:69517614-69517633 | MsG0280010436.01.T01:intron | 40.0% | |
| GTCCTCTCACATTCATTAAC+TGG | - | Chr2:69517469-69517488 | None:intergenic | 40.0% | |
| TCAAAGCTCATGACACTTCA+AGG | + | Chr2:69518237-69518256 | MsG0280010436.01.T01:CDS | 40.0% | |
| TGAACAACACTTAGGAATCG+AGG | + | Chr2:69517556-69517575 | MsG0280010436.01.T01:intron | 40.0% | |
| TGCCTATTCGATGTTTCCAA+GGG | + | Chr2:69518038-69518057 | MsG0280010436.01.T01:intron | 40.0% | |
| ! | AGTATTTTCCTCTCTTGGTC+TGG | + | Chr2:69517085-69517104 | MsG0280010436.01.T01:intron | 40.0% |
| !! | CATGTGATGGATAAAACCCT+TGG | - | Chr2:69518057-69518076 | None:intergenic | 40.0% |
| !! | GTTTGAGTTGGGACGTTAAA+AGG | - | Chr2:69517266-69517285 | None:intergenic | 40.0% |
| !! | TCAGTTTTGTGTGTCGTATC+CGG | + | Chr2:69517730-69517749 | MsG0280010436.01.T01:intron | 40.0% |
| !! | TTTTGGAGGTTCAGATGTAC+CGG | + | Chr2:69517935-69517954 | MsG0280010436.01.T01:intron | 40.0% |
| ACATTATCAACCCCCTGAAC+TGG | + | Chr2:69517230-69517249 | MsG0280010436.01.T01:intron | 45.0% | |
| GAGTTGAGAAACATGCCCTT+TGG | + | Chr2:69517858-69517877 | MsG0280010436.01.T01:intron | 45.0% | |
| GTGCCTATTCGATGTTTCCA+AGG | + | Chr2:69518037-69518056 | MsG0280010436.01.T01:intron | 45.0% | |
| GTTTCAGTAGAGGAGACGAT+GGG | - | Chr2:69518199-69518218 | None:intergenic | 45.0% | |
| TGAAGCATGAGCACAAACAC+CGG | - | Chr2:69517752-69517771 | None:intergenic | 45.0% | |
| TGTTTCAGTAGAGGAGACGA+TGG | - | Chr2:69518200-69518219 | None:intergenic | 45.0% | |
| ! | CTTTTGTGCATGCTGTTGAG+AGG | + | Chr2:69516843-69516862 | MsG0280010436.01.T01:CDS | 45.0% |
| ! | GTTGTTTCATTGGTCGCCAA+AGG | - | Chr2:69516930-69516949 | None:intergenic | 45.0% |
| !! | GCAAGGAAGGCATCACATTA+TGG | + | Chr2:69518133-69518152 | MsG0280010436.01.T01:CDS | 45.0% |
| !! | GTAATTATAGGCGTCGGTGT+CGG | - | Chr2:69517666-69517685 | None:intergenic | 45.0% |
| !! | TTCAGGGGGTTGATAATGTC+CGG | - | Chr2:69517229-69517248 | None:intergenic | 45.0% |
| !!! | AAAATTTATATTTATTTTGA+GGG | + | Chr2:69517392-69517411 | MsG0280010436.01.T01:intron | 5.0% |
| !!! | TAAAATTTATATTTATTTTG+AGG | + | Chr2:69517391-69517410 | MsG0280010436.01.T01:intron | 5.0% |
| AAGCTTGATGAGTCTGGCCA+AGG | + | Chr2:69517964-69517983 | MsG0280010436.01.T01:CDS | 50.0% | |
| ACTGGGACACGCCTAATCAA+AGG | - | Chr2:69517628-69517647 | None:intergenic | 50.0% | |
| AGTGTCAAGACCAGTTCAGG+GGG | - | Chr2:69517243-69517262 | None:intergenic | 50.0% | |
| ATGCTGTTGAGAGGCTTGGA+GGG | + | Chr2:69516852-69516871 | MsG0280010436.01.T01:CDS | 50.0% | |
| CCAATGTTCCAGACCAAGAG+AGG | - | Chr2:69517096-69517115 | None:intergenic | 50.0% | |
| GAGTGTCAAGACCAGTTCAG+GGG | - | Chr2:69517244-69517263 | None:intergenic | 50.0% | |
| ! | CCTCTCTTGGTCTGGAACAT+TGG | + | Chr2:69517093-69517112 | MsG0280010436.01.T01:intron | 50.0% |
| ! | GGAGTGTCAAGACCAGTTCA+GGG | - | Chr2:69517245-69517264 | None:intergenic | 50.0% |
| !! | AGGAGTGTCAAGACCAGTTC+AGG | - | Chr2:69517246-69517265 | None:intergenic | 50.0% |
| CATGCTGTTGAGAGGCTTGG+AGG | + | Chr2:69516851-69516870 | MsG0280010436.01.T01:CDS | 55.0% | |
| GATTAGGCGTGTCCCAGTGT+TGG | + | Chr2:69517630-69517649 | MsG0280010436.01.T01:intron | 55.0% | |
| GGACACACGTGTCCAACACT+GGG | - | Chr2:69517645-69517664 | None:intergenic | 55.0% | |
| GTGCATGCTGTTGAGAGGCT+TGG | + | Chr2:69516848-69516867 | MsG0280010436.01.T01:CDS | 55.0% | |
| TCAGGAGTCCAACGAAGCCT+AGG | - | Chr2:69516812-69516831 | None:intergenic | 55.0% | |
| CGGACACACGTGTCCAACAC+TGG | - | Chr2:69517646-69517665 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr2 | gene | 69516806 | 69518271 | 69516806 | ID=MsG0280010436.01;Name=MsG0280010436.01 |
| Chr2 | mRNA | 69516806 | 69518271 | 69516806 | ID=MsG0280010436.01.T01;Parent=MsG0280010436.01;Name=MsG0280010436.01.T01;_AED=0.37;_eAED=0.37;_QI=0|0|0|1|0.66|0.5|4|0|118 |
| Chr2 | exon | 69516806 | 69516885 | 69516806 | ID=MsG0280010436.01.T01:exon:26755;Parent=MsG0280010436.01.T01 |
| Chr2 | exon | 69517445 | 69517520 | 69517445 | ID=MsG0280010436.01.T01:exon:26756;Parent=MsG0280010436.01.T01 |
| Chr2 | exon | 69517949 | 69517985 | 69517949 | ID=MsG0280010436.01.T01:exon:26757;Parent=MsG0280010436.01.T01 |
| Chr2 | exon | 69518108 | 69518271 | 69518108 | ID=MsG0280010436.01.T01:exon:26758;Parent=MsG0280010436.01.T01 |
| Chr2 | CDS | 69516806 | 69516885 | 69516806 | ID=MsG0280010436.01.T01:cds;Parent=MsG0280010436.01.T01 |
| Chr2 | CDS | 69517445 | 69517520 | 69517445 | ID=MsG0280010436.01.T01:cds;Parent=MsG0280010436.01.T01 |
| Chr2 | CDS | 69517949 | 69517985 | 69517949 | ID=MsG0280010436.01.T01:cds;Parent=MsG0280010436.01.T01 |
| Chr2 | CDS | 69518108 | 69518271 | 69518108 | ID=MsG0280010436.01.T01:cds;Parent=MsG0280010436.01.T01 |
| Gene Sequence |
| Protein sequence |
