AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480022735.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022735.01.T01 MTR_4g094488 97.045 440 13 0 1 440 104 543 0.0 890
MsG0480022735.01.T01 MTR_4g094495 83.636 440 72 0 1 440 107 546 0.0 753
MsG0480022735.01.T01 MTR_4g094478 81.293 433 79 1 1 433 104 534 0.0 726
MsG0480022735.01.T01 MTR_4g094492 79.910 443 82 3 1 440 104 542 0.0 715
MsG0480022735.01.T01 MTR_4g094480 79.545 440 88 1 1 440 104 541 0.0 713
MsG0480022735.01.T01 MTR_4g094418 73.227 437 110 2 1 433 1 434 0.0 667
MsG0480022735.01.T01 MTR_3g009820 59.722 432 165 3 1 432 98 520 0.0 528
MsG0480022735.01.T01 MTR_3g009880 60.185 432 163 3 1 432 96 518 0.0 527
MsG0480022735.01.T01 MTR_3g009760 59.815 433 163 4 1 432 98 520 0.0 526
MsG0480022735.01.T01 MTR_2g031390 55.862 435 181 6 1 432 101 527 7.54e-178 508
MsG0480022735.01.T01 MTR_2g031560 56.713 432 181 3 1 432 96 521 1.36e-177 508
MsG0480022735.01.T01 MTR_2g031420 59.722 432 164 6 1 432 104 525 1.03e-172 494
MsG0480022735.01.T01 MTR_2g031460 59.629 431 164 5 1 431 104 524 6.37e-171 490
MsG0480022735.01.T01 MTR_2g031590 56.452 434 185 3 1 433 101 531 1.17e-169 487
MsG0480022735.01.T01 MTR_4g094518 57.931 435 172 6 1 432 102 528 1.33e-167 482
MsG0480022735.01.T01 MTR_4g094520 57.241 435 176 6 1 433 105 531 2.17e-167 481
MsG0480022735.01.T01 MTR_4g094498 56.064 437 183 3 1 437 110 537 5.49e-166 478
MsG0480022735.01.T01 MTR_2g031490 54.943 435 187 4 1 432 108 536 3.36e-156 453
MsG0480022735.01.T01 MTR_2g031510 54.023 435 191 4 1 432 110 538 1.92e-154 449
MsG0480022735.01.T01 MTR_4g094515 55.149 437 190 3 1 437 723 1153 1.41e-149 454
MsG0480022735.01.T01 MTR_4g094515 53.547 437 193 5 1 434 111 540 9.53e-143 437
MsG0480022735.01.T01 MTR_4g057990 53.103 435 194 4 1 434 97 522 2.74e-149 435
MsG0480022735.01.T01 MTR_4g088355 52.392 439 202 4 1 438 105 537 5.17e-149 434
MsG0480022735.01.T01 MTR_4g091150 53.456 434 195 5 1 432 110 538 3.77e-148 432
MsG0480022735.01.T01 MTR_6g017205 53.318 437 195 4 1 435 98 527 4.12e-148 432
MsG0480022735.01.T01 MTR_4g091200 52.523 436 198 4 1 434 98 526 5.88e-147 429
MsG0480022735.01.T01 MTR_4g091170 49.545 440 197 5 1 439 132 547 7.49e-145 425
MsG0480022735.01.T01 MTR_4g091190 51.259 437 204 3 2 437 103 531 1.53e-144 423
MsG0480022735.01.T01 MTR_2g023590 49.078 434 212 3 1 433 40 465 1.15e-135 398
MsG0480022735.01.T01 MTR_1g076830 44.977 438 224 6 1 431 105 532 1.64e-117 354
MsG0480022735.01.T01 MTR_3g009850 58.667 225 89 3 209 432 5 226 3.53e-88 268
MsG0480022735.01.T01 MTR_2g031600 73.427 143 38 0 1 143 102 244 2.08e-62 207
MsG0480022735.01.T01 MTR_2g031600 52.532 158 72 2 276 433 245 399 1.42e-51 179
MsG0480022735.01.T01 MTR_2g084370 48.649 111 35 2 25 135 1 89 1.85e-32 119
MsG0480022735.01.T01 MTR_2g084405 58.750 80 33 0 25 104 1 80 4.32e-24 96.7
MsG0480022735.01.T01 MTR_8g062280 36.893 103 35 3 333 435 4 76 1.13e-12 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022735.01.T01 AT2G34790 54.338 438 185 7 1 435 106 531 6.69e-165 475
MsG0480022735.01.T01 AT5G44400 54.005 437 186 7 1 432 108 534 1.31e-163 472
MsG0480022735.01.T01 AT4G20820 56.019 432 175 5 1 432 108 524 7.84e-162 467
MsG0480022735.01.T01 AT5G44360 55.963 436 173 9 1 432 108 528 4.52e-161 465
MsG0480022735.01.T01 AT5G44360 55.963 436 173 9 1 432 124 544 5.95e-161 465
MsG0480022735.01.T01 AT1G30760 53.881 438 187 6 1 435 108 533 1.34e-160 464
MsG0480022735.01.T01 AT1G30760 53.881 438 187 6 1 435 126 551 1.89e-160 464
MsG0480022735.01.T01 AT5G44440 54.233 437 184 5 1 432 102 527 2.70e-160 463
MsG0480022735.01.T01 AT4G20860 55.046 436 179 9 1 432 105 527 2.30e-159 461
MsG0480022735.01.T01 AT5G44440 54.233 437 184 5 1 432 172 597 2.76e-159 463
MsG0480022735.01.T01 AT5G44390 52.273 440 193 9 1 433 110 539 1.07e-153 447
MsG0480022735.01.T01 AT5G44410 53.653 438 181 7 1 432 106 527 1.07e-152 444
MsG0480022735.01.T01 AT5G44380 54.587 436 185 6 1 432 111 537 6.86e-151 439
MsG0480022735.01.T01 AT5G44380 54.587 436 185 6 1 432 151 577 1.46e-150 440
MsG0480022735.01.T01 AT1G26410 53.118 433 192 7 1 432 125 547 6.62e-148 432
MsG0480022735.01.T01 AT1G30710 52.174 437 189 8 1 432 105 526 1.27e-147 431
MsG0480022735.01.T01 AT1G26390 53.241 432 195 4 1 432 101 525 6.22e-147 429
MsG0480022735.01.T01 AT1G26380 52.727 440 199 6 1 440 101 531 2.21e-146 428
MsG0480022735.01.T01 AT1G26420 52.656 433 194 7 1 432 101 523 6.65e-146 426
MsG0480022735.01.T01 AT1G11770 51.494 435 199 5 1 433 104 528 3.81e-145 425
MsG0480022735.01.T01 AT1G34575 51.247 441 196 8 1 437 102 527 1.77e-144 422
MsG0480022735.01.T01 AT1G30730 51.270 433 201 5 1 432 100 523 7.35e-144 421
MsG0480022735.01.T01 AT1G30700 52.414 435 195 6 1 432 99 524 1.10e-143 421
MsG0480022735.01.T01 AT4G20840 50.685 438 204 5 3 438 112 539 1.66e-143 421
MsG0480022735.01.T01 AT1G26400 51.376 436 201 6 1 435 101 526 4.97e-141 414
MsG0480022735.01.T01 AT1G30720 51.039 433 202 5 1 432 101 524 2.34e-138 407
MsG0480022735.01.T01 AT4G20800 50.691 434 202 6 1 432 100 523 6.01e-137 404
MsG0480022735.01.T01 AT4G20830 49.886 439 206 6 3 438 113 540 5.38e-134 396
MsG0480022735.01.T01 AT1G01980 50.113 443 204 7 2 437 105 537 1.46e-133 395
MsG0480022735.01.T01 AT4G20830 50.000 434 203 6 3 433 113 535 1.42e-132 394
MsG0480022735.01.T01 AT1G30740 49.545 440 202 7 1 433 104 530 1.37e-130 387
MsG0480022735.01.T01 AT1G30740 49.545 440 202 7 1 433 101 527 1.66e-130 387
MsG0480022735.01.T01 AT2G34810 47.126 435 223 4 1 432 107 537 1.49e-126 377

Find 90 sgRNAs with CRISPR-Local

Find 103 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTATAAGCAAGCTAGTATT+TGG 0.193317 4:+76115156 MsG0480022735.01.T01:CDS
AATCCTTCTAAACCAGTTTC+AGG 0.221499 4:-76114831 None:intergenic
GTTTCAAGTGGTTCGCCTTC+TGG 0.231675 4:-76114738 None:intergenic
TAGAAAACTTTATAGTTATA+TGG 0.249330 4:+76115046 MsG0480022735.01.T01:CDS
CAATGGGTGAAGATTTGTTT+TGG 0.263104 4:+76114328 MsG0480022735.01.T01:CDS
TTATTTCAATCCTTGTTTCT+AGG 0.269621 4:+76114600 MsG0480022735.01.T01:CDS
CTAATGGTATTGTTTCCTTA+TGG 0.282122 4:+76114891 MsG0480022735.01.T01:CDS
AAACTGGTTTAGAAGGATTA+TGG 0.294935 4:+76114835 MsG0480022735.01.T01:CDS
CGCCTTCTGGAAACCGAAAA+AGG 0.314622 4:-76114725 None:intergenic
ATTCCTGAAACTGGTTTAGA+AGG 0.316827 4:+76114828 MsG0480022735.01.T01:CDS
CACTTCAGTGGTGGTGGATA+TGG 0.317127 4:+76114216 MsG0480022735.01.T01:CDS
TCTAAACCAGTTTCAGGAAT+AGG 0.319812 4:-76114825 None:intergenic
AATTATAGAGACCTTGATAT+TGG 0.322332 4:+76115107 MsG0480022735.01.T01:CDS
AAAATTCCTATTCCTGAAAC+TGG 0.323303 4:+76114819 MsG0480022735.01.T01:CDS
TCATTTCTGAAGAAGTTTAG+AGG 0.331220 4:-76115239 None:intergenic
ATTGGTGTGAATAACATTAA+TGG 0.335537 4:+76115125 MsG0480022735.01.T01:CDS
ATTCCATTTCCACATAGATA+TGG 0.343229 4:+76114945 MsG0480022735.01.T01:CDS
GGTGGTGGAGGAGCAAGTTT+TGG 0.349746 4:+76114360 MsG0480022735.01.T01:CDS
GTAAACACTGTTACAGTTGA+TGG 0.351158 4:-76114420 None:intergenic
CTATAAGCAAGCTAGTATTT+GGG 0.368691 4:+76115157 MsG0480022735.01.T01:CDS
TGGAGAAGTTGCACATCAAT+TGG 0.370174 4:+76115021 MsG0480022735.01.T01:CDS
CAAGAATAACTTCAAAAGAT+TGG 0.374379 4:+76115193 MsG0480022735.01.T01:CDS
CTTGGAGACTTTGAAACAAA+AGG 0.375011 4:-76115071 None:intergenic
GTTTCCTTATGGTGGCATAA+TGG 0.388858 4:+76114902 MsG0480022735.01.T01:CDS
GAAGAAAAGTTTCCTGAACT+TGG 0.392423 4:+76114651 MsG0480022735.01.T01:CDS
GTTCCATATCTATGTGGAAA+TGG 0.394166 4:-76114948 None:intergenic
GAAATTCTATTTGCGTCCCT+TGG 0.394677 4:-76115285 None:intergenic
AGATAACCTCTTACCCTTGA+TGG 0.394714 4:+76114629 MsG0480022735.01.T01:CDS
TCTCTAACCAACCCAAGTTC+AGG 0.400856 4:-76114663 None:intergenic
GACAAAATCAGATTTCGCTT+TGG 0.411110 4:-76114796 None:intergenic
AAAACTCTTGGTTTCCCTGC+AGG 0.420339 4:+76114165 MsG0480022735.01.T01:CDS
TTTCTTCCATCAAGGGTAAG+AGG 0.424421 4:-76114635 None:intergenic
AAAACTGCTTGGGTTCAATC+TGG 0.435993 4:+76114099 MsG0480022735.01.T01:CDS
AAAGCTAGTACTGTTGACTT+TGG 0.458454 4:-76114579 None:intergenic
TAATTAATATATGCAGCTCT+TGG 0.463039 4:-76115089 None:intergenic
GGAACCTTGTTGCGTAAATA+CGG 0.466163 4:+76114237 MsG0480022735.01.T01:CDS
AAGATTGTGTTGAAATGAGT+TGG 0.466692 4:+76114685 MsG0480022735.01.T01:CDS
GTGAGCATCAATGATGTTAT+CGG 0.478746 4:-76114268 None:intergenic
GTGAGATCAATGATGACAAA+AGG 0.482657 4:-76114042 None:intergenic
TGTTATTCACACCAATATCA+AGG 0.485733 4:-76115118 None:intergenic
TGGGCTATTAGAGGTGGTGG+AGG 0.490480 4:+76114348 MsG0480022735.01.T01:CDS
TGTAGAAAACAAAACTGCTT+GGG 0.493208 4:+76114089 MsG0480022735.01.T01:CDS
TGGTGCGGAAGAGGTACTAA+TGG 0.495510 4:+76114875 MsG0480022735.01.T01:CDS
TAGCGGTGGCCACGACTTCG+AGG 0.497341 4:+76113996 MsG0480022735.01.T01:CDS
AAAGTTTCCTGAACTTGGGT+TGG 0.502529 4:+76114656 MsG0480022735.01.T01:CDS
TTATCCATTATGCCACCATA+AGG 0.506968 4:-76114906 None:intergenic
GAAGTTTAGAGGATCAACTT+TGG 0.511187 4:-76115228 None:intergenic
AAGAAAAGTTTCCTGAACTT+GGG 0.512048 4:+76114652 MsG0480022735.01.T01:CDS
TGAAATGAGTTGGATTGAAT+CGG 0.514164 4:+76114695 MsG0480022735.01.T01:CDS
ACAGTAGGACAAACACCTGC+AGG 0.514616 4:-76114180 None:intergenic
ATGGTATTGTTTCCTTATGG+TGG 0.522116 4:+76114894 MsG0480022735.01.T01:CDS
TGGCCTATGTTTGATGAAGA+TGG 0.529049 4:+76114855 MsG0480022735.01.T01:CDS
CTGTTGAGCAACGTTTCAAG+TGG 0.530743 4:-76114750 None:intergenic
TGTCCTACTGTAGGTGTTGG+TGG 0.531106 4:+76114192 MsG0480022735.01.T01:CDS
GTTTCTTGACAGAGAAGCAA+TGG 0.534469 4:+76114311 MsG0480022735.01.T01:CDS
ATGTAGAAAACAAAACTGCT+TGG 0.538313 4:+76114088 MsG0480022735.01.T01:CDS
GCAGGTGTTTGTCCTACTGT+AGG 0.539536 4:+76114183 MsG0480022735.01.T01:CDS
GTTTGTCCTACTGTAGGTGT+TGG 0.546834 4:+76114189 MsG0480022735.01.T01:CDS
GTTTACTGTTCCAAGAACAT+TGG 0.547876 4:+76114437 MsG0480022735.01.T01:CDS
CGTCCCTTGGACACATGAGA+AGG 0.549392 4:-76115272 None:intergenic
TGATGAAGATGGTGCGGAAG+AGG 0.557116 4:+76114866 MsG0480022735.01.T01:CDS
CAACAGAACACTAGCTGCAA+AGG 0.565270 4:+76114767 MsG0480022735.01.T01:CDS
TTTCTTGACAGAGAAGCAAT+GGG 0.565816 4:+76114312 MsG0480022735.01.T01:CDS
GGTGGACACTTCAGTGGTGG+TGG 0.566542 4:+76114210 MsG0480022735.01.T01:CDS
TATACCTTCTCATGTGTCCA+AGG 0.569407 4:+76115268 MsG0480022735.01.T01:CDS
TATAAGGTTCCATATCTATG+TGG 0.572757 4:-76114954 None:intergenic
AAATTCAGTATGCAGTGCAC+TGG 0.574982 4:+76114979 MsG0480022735.01.T01:CDS
GTTCAATCTGGTGCAACACT+TGG 0.575161 4:+76114111 MsG0480022735.01.T01:CDS
ACATAATTGATGTGAAAGGT+AGG 0.586594 4:+76114289 MsG0480022735.01.T01:CDS
AAATTAATATTATCTTGCAA+AGG 0.587351 4:+76114526 MsG0480022735.01.T01:CDS
AAGATAGACCCTCGAAGTCG+TGG 0.589802 4:-76114005 None:intergenic
ATGCAACAAAGCTTGTTCAC+AGG 0.593221 4:+76114466 MsG0480022735.01.T01:CDS
GCACCATCTTCATCAAACAT+AGG 0.602030 4:-76114858 None:intergenic
ATCTACACTTCCTAGAAACA+AGG 0.610016 4:-76114610 None:intergenic
CAAATTCGAATTCGTAGCGG+TGG 0.611749 4:+76113982 MsG0480022735.01.T01:CDS
GCATCAAGAAGGTGATGAGG+TGG 0.615161 4:+76115001 MsG0480022735.01.T01:CDS
TATAAGCAAGCTAGTATTTG+GGG 0.624423 4:+76115158 MsG0480022735.01.T01:CDS
GTTGGTGGACACTTCAGTGG+TGG 0.625730 4:+76114207 MsG0480022735.01.T01:CDS
GCAGTGCACTGGCATCAAGA+AGG 0.625900 4:+76114990 MsG0480022735.01.T01:CDS
AGCGGTGGCCACGACTTCGA+GGG 0.628178 4:+76113997 MsG0480022735.01.T01:CDS
CAACAAAGCTTGTTCACAGG+TGG 0.634425 4:+76114469 MsG0480022735.01.T01:CDS
GGTGTTGGTGGACACTTCAG+TGG 0.638405 4:+76114204 MsG0480022735.01.T01:CDS
CAGTAGGACAAACACCTGCA+GGG 0.647987 4:-76114179 None:intergenic
AAGACCGTATTTACGCAACA+AGG 0.650712 4:-76114241 None:intergenic
ATACCTTCTCATGTGTCCAA+GGG 0.652262 4:+76115269 MsG0480022735.01.T01:CDS
GCTCACATAATTGATGTGAA+AGG 0.660187 4:+76114285 MsG0480022735.01.T01:CDS
TGTCCACCAACACCTACAGT+AGG 0.663218 4:-76114195 None:intergenic
CTGGCATCAAGAAGGTGATG+AGG 0.689653 4:+76114998 MsG0480022735.01.T01:CDS
TATGTTTGATGAAGATGGTG+CGG 0.701729 4:+76114860 MsG0480022735.01.T01:CDS
ATGCAAATTCGAATTCGTAG+CGG 0.744504 4:+76113979 MsG0480022735.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTAATATTATCTTGCAA+AGG + Chr4:76114526-76114545 MsG0480022735.01.T01:CDS 15.0%
!! TAGAAAACTTTATAGTTATA+TGG + Chr4:76115046-76115065 MsG0480022735.01.T01:CDS 15.0%
!! GATTTGAATTCAAGTAAAAA+AGG + Chr4:76114552-76114571 MsG0480022735.01.T01:CDS 20.0%
! AATTATAGAGACCTTGATAT+TGG + Chr4:76115107-76115126 MsG0480022735.01.T01:CDS 25.0%
! ATTGGTGTGAATAACATTAA+TGG + Chr4:76115125-76115144 MsG0480022735.01.T01:CDS 25.0%
! CAAGAATAACTTCAAAAGAT+TGG + Chr4:76115193-76115212 MsG0480022735.01.T01:CDS 25.0%
! TAATTAATATATGCAGCTCT+TGG - Chr4:76115092-76115111 None:intergenic 25.0%
!! TGCATACTGAATTTTGTATA+AGG - Chr4:76114973-76114992 None:intergenic 25.0%
!! TTATTTCAATCCTTGTTTCT+AGG + Chr4:76114600-76114619 MsG0480022735.01.T01:CDS 25.0%
AAAATTCCTATTCCTGAAAC+TGG + Chr4:76114819-76114838 MsG0480022735.01.T01:CDS 30.0%
AAGAAAAGTTTCCTGAACTT+GGG + Chr4:76114652-76114671 MsG0480022735.01.T01:CDS 30.0%
AAGATTGTGTTGAAATGAGT+TGG + Chr4:76114685-76114704 MsG0480022735.01.T01:CDS 30.0%
ACATAATTGATGTGAAAGGT+AGG + Chr4:76114289-76114308 MsG0480022735.01.T01:CDS 30.0%
ATGTAGAAAACAAAACTGCT+TGG + Chr4:76114088-76114107 MsG0480022735.01.T01:CDS 30.0%
ATTCCATTTCCACATAGATA+TGG + Chr4:76114945-76114964 MsG0480022735.01.T01:CDS 30.0%
CTAATGGTATTGTTTCCTTA+TGG + Chr4:76114891-76114910 MsG0480022735.01.T01:CDS 30.0%
CTATAAGCAAGCTAGTATTT+GGG + Chr4:76115157-76115176 MsG0480022735.01.T01:CDS 30.0%
TATAAGCAAGCTAGTATTTG+GGG + Chr4:76115158-76115177 MsG0480022735.01.T01:CDS 30.0%
TATAAGGTTCCATATCTATG+TGG - Chr4:76114957-76114976 None:intergenic 30.0%
TGTAGAAAACAAAACTGCTT+GGG + Chr4:76114089-76114108 MsG0480022735.01.T01:CDS 30.0%
TGTTATTCACACCAATATCA+AGG - Chr4:76115121-76115140 None:intergenic 30.0%
! AAACTGGTTTAGAAGGATTA+TGG + Chr4:76114835-76114854 MsG0480022735.01.T01:CDS 30.0%
! TCATTTCTGAAGAAGTTTAG+AGG - Chr4:76115242-76115261 None:intergenic 30.0%
! TGAAATGAGTTGGATTGAAT+CGG + Chr4:76114695-76114714 MsG0480022735.01.T01:CDS 30.0%
!! AATCGGTTCTTTACCTTTTT+CGG + Chr4:76114712-76114731 MsG0480022735.01.T01:CDS 30.0%
!! AATGGGTGAAGATTTGTTTT+GGG + Chr4:76114329-76114348 MsG0480022735.01.T01:CDS 30.0%
!!! AACCAAGAGTTTTGCTTTTT+TGG - Chr4:76114158-76114177 None:intergenic 30.0%
AATCCTTCTAAACCAGTTTC+AGG - Chr4:76114834-76114853 None:intergenic 35.0%
AGCCAAAAAAGCAAAACTCT+TGG + Chr4:76114153-76114172 MsG0480022735.01.T01:CDS 35.0%
ATCTACACTTCCTAGAAACA+AGG - Chr4:76114613-76114632 None:intergenic 35.0%
ATGCAAATTCGAATTCGTAG+CGG + Chr4:76113979-76113998 MsG0480022735.01.T01:CDS 35.0%
ATGGTATTGTTTCCTTATGG+TGG + Chr4:76114894-76114913 MsG0480022735.01.T01:CDS 35.0%
GAAGAAAAGTTTCCTGAACT+TGG + Chr4:76114651-76114670 MsG0480022735.01.T01:CDS 35.0%
GAAGTTTAGAGGATCAACTT+TGG - Chr4:76115231-76115250 None:intergenic 35.0%
GACAAAATCAGATTTCGCTT+TGG - Chr4:76114799-76114818 None:intergenic 35.0%
GCTATAAGCAAGCTAGTATT+TGG + Chr4:76115156-76115175 MsG0480022735.01.T01:CDS 35.0%
GCTCACATAATTGATGTGAA+AGG + Chr4:76114285-76114304 MsG0480022735.01.T01:CDS 35.0%
GTAAACACTGTTACAGTTGA+TGG - Chr4:76114423-76114442 None:intergenic 35.0%
GTGAGATCAATGATGACAAA+AGG - Chr4:76114045-76114064 None:intergenic 35.0%
GTGAGCATCAATGATGTTAT+CGG - Chr4:76114271-76114290 None:intergenic 35.0%
GTTCCATATCTATGTGGAAA+TGG - Chr4:76114951-76114970 None:intergenic 35.0%
GTTTACTGTTCCAAGAACAT+TGG + Chr4:76114437-76114456 MsG0480022735.01.T01:CDS 35.0%
TATGTTTGATGAAGATGGTG+CGG + Chr4:76114860-76114879 MsG0480022735.01.T01:CDS 35.0%
TCTAAACCAGTTTCAGGAAT+AGG - Chr4:76114828-76114847 None:intergenic 35.0%
TTATCCATTATGCCACCATA+AGG - Chr4:76114909-76114928 None:intergenic 35.0%
TTTCTTGACAGAGAAGCAAT+GGG + Chr4:76114312-76114331 MsG0480022735.01.T01:CDS 35.0%
! AGGAAACTTTTCTTCCATCA+AGG - Chr4:76114646-76114665 None:intergenic 35.0%
! ATTCCTGAAACTGGTTTAGA+AGG + Chr4:76114828-76114847 MsG0480022735.01.T01:CDS 35.0%
! GCATTTTGTTCCAATGTTCT+TGG - Chr4:76114450-76114469 None:intergenic 35.0%
! GGAAACTTTTCTTCCATCAA+GGG - Chr4:76114645-76114664 None:intergenic 35.0%
!! AAAGCTAGTACTGTTGACTT+TGG - Chr4:76114582-76114601 None:intergenic 35.0%
!! CAATGGGTGAAGATTTGTTT+TGG + Chr4:76114328-76114347 MsG0480022735.01.T01:CDS 35.0%
!! CTTGGAGACTTTGAAACAAA+AGG - Chr4:76115074-76115093 None:intergenic 35.0%
!!! GATTTGTTTTGGGCTATTAG+AGG + Chr4:76114339-76114358 MsG0480022735.01.T01:CDS 35.0%
!!! GTTTTGGTGTCATAGTTTCA+TGG + Chr4:76114376-76114395 MsG0480022735.01.T01:CDS 35.0%
AAAACTGCTTGGGTTCAATC+TGG + Chr4:76114099-76114118 MsG0480022735.01.T01:CDS 40.0%
AAAGTTTCCTGAACTTGGGT+TGG + Chr4:76114656-76114675 MsG0480022735.01.T01:CDS 40.0%
AAATTCAGTATGCAGTGCAC+TGG + Chr4:76114979-76114998 MsG0480022735.01.T01:CDS 40.0%
AAGACCGTATTTACGCAACA+AGG - Chr4:76114244-76114263 None:intergenic 40.0%
AGATAACCTCTTACCCTTGA+TGG + Chr4:76114629-76114648 MsG0480022735.01.T01:CDS 40.0%
ATACCTTCTCATGTGTCCAA+GGG + Chr4:76115269-76115288 MsG0480022735.01.T01:CDS 40.0%
GCACCATCTTCATCAAACAT+AGG - Chr4:76114861-76114880 None:intergenic 40.0%
GGAACCTTGTTGCGTAAATA+CGG + Chr4:76114237-76114256 MsG0480022735.01.T01:CDS 40.0%
GTTTCCTTATGGTGGCATAA+TGG + Chr4:76114902-76114921 MsG0480022735.01.T01:CDS 40.0%
GTTTCTTGACAGAGAAGCAA+TGG + Chr4:76114311-76114330 MsG0480022735.01.T01:CDS 40.0%
TATACCTTCTCATGTGTCCA+AGG + Chr4:76115268-76115287 MsG0480022735.01.T01:CDS 40.0%
TGGAGAAGTTGCACATCAAT+TGG + Chr4:76115021-76115040 MsG0480022735.01.T01:CDS 40.0%
TGGCCTATGTTTGATGAAGA+TGG + Chr4:76114855-76114874 MsG0480022735.01.T01:CDS 40.0%
TTTCTTCCATCAAGGGTAAG+AGG - Chr4:76114638-76114657 None:intergenic 40.0%
! ATGCAACAAAGCTTGTTCAC+AGG + Chr4:76114466-76114485 MsG0480022735.01.T01:CDS 40.0%
!!! TACCTTTTTCGGTTTCCAGA+AGG + Chr4:76114723-76114742 MsG0480022735.01.T01:CDS 40.0%
!!! TTGTTTTGGGCTATTAGAGG+TGG + Chr4:76114342-76114361 MsG0480022735.01.T01:CDS 40.0%
AAAACTCTTGGTTTCCCTGC+AGG + Chr4:76114165-76114184 MsG0480022735.01.T01:CDS 45.0%
CAAATTCGAATTCGTAGCGG+TGG + Chr4:76113982-76114001 MsG0480022735.01.T01:CDS 45.0%
CAACAGAACACTAGCTGCAA+AGG + Chr4:76114767-76114786 MsG0480022735.01.T01:CDS 45.0%
CTGTTGAGCAACGTTTCAAG+TGG - Chr4:76114753-76114772 None:intergenic 45.0%
GTTCAATCTGGTGCAACACT+TGG + Chr4:76114111-76114130 MsG0480022735.01.T01:CDS 45.0%
GTTTGTCCTACTGTAGGTGT+TGG + Chr4:76114189-76114208 MsG0480022735.01.T01:CDS 45.0%
TCTCTAACCAACCCAAGTTC+AGG - Chr4:76114666-76114685 None:intergenic 45.0%
! CAACAAAGCTTGTTCACAGG+TGG + Chr4:76114469-76114488 MsG0480022735.01.T01:CDS 45.0%
! TTTTGGGCTATTAGAGGTGG+TGG + Chr4:76114345-76114364 MsG0480022735.01.T01:CDS 45.0%
AAGATAGACCCTCGAAGTCG+TGG - Chr4:76114008-76114027 None:intergenic 50.0%
ACAGTAGGACAAACACCTGC+AGG - Chr4:76114183-76114202 None:intergenic 50.0%
CAGTAGGACAAACACCTGCA+GGG - Chr4:76114182-76114201 None:intergenic 50.0%
CTGGCATCAAGAAGGTGATG+AGG + Chr4:76114998-76115017 MsG0480022735.01.T01:CDS 50.0%
GCAGGTGTTTGTCCTACTGT+AGG + Chr4:76114183-76114202 MsG0480022735.01.T01:CDS 50.0%
GCATCAAGAAGGTGATGAGG+TGG + Chr4:76115001-76115020 MsG0480022735.01.T01:CDS 50.0%
TGATGAAGATGGTGCGGAAG+AGG + Chr4:76114866-76114885 MsG0480022735.01.T01:CDS 50.0%
TGTCCACCAACACCTACAGT+AGG - Chr4:76114198-76114217 None:intergenic 50.0%
! CGCCTTCTGGAAACCGAAAA+AGG - Chr4:76114728-76114747 None:intergenic 50.0%
! GTTTCAAGTGGTTCGCCTTC+TGG - Chr4:76114741-76114760 None:intergenic 50.0%
!! CACTTCAGTGGTGGTGGATA+TGG + Chr4:76114216-76114235 MsG0480022735.01.T01:CDS 50.0%
!! TGGTGCGGAAGAGGTACTAA+TGG + Chr4:76114875-76114894 MsG0480022735.01.T01:CDS 50.0%
!! TGTCCTACTGTAGGTGTTGG+TGG + Chr4:76114192-76114211 MsG0480022735.01.T01:CDS 50.0%
CGTCCCTTGGACACATGAGA+AGG - Chr4:76115275-76115294 None:intergenic 55.0%
! GCAGTGCACTGGCATCAAGA+AGG + Chr4:76114990-76115009 MsG0480022735.01.T01:CDS 55.0%
! GTTGGTGGACACTTCAGTGG+TGG + Chr4:76114207-76114226 MsG0480022735.01.T01:CDS 55.0%
! TGGGCTATTAGAGGTGGTGG+AGG + Chr4:76114348-76114367 MsG0480022735.01.T01:CDS 55.0%
!! GGTGTTGGTGGACACTTCAG+TGG + Chr4:76114204-76114223 MsG0480022735.01.T01:CDS 55.0%
!!! GGTGGTGGAGGAGCAAGTTT+TGG + Chr4:76114360-76114379 MsG0480022735.01.T01:CDS 55.0%
GGTGGACACTTCAGTGGTGG+TGG + Chr4:76114210-76114229 MsG0480022735.01.T01:CDS 60.0%
AGCGGTGGCCACGACTTCGA+GGG + Chr4:76113997-76114016 MsG0480022735.01.T01:CDS 65.0%
TAGCGGTGGCCACGACTTCG+AGG + Chr4:76113996-76114015 MsG0480022735.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr4 gene 76113979 76115301 76113979 ID=MsG0480022735.01;Name=MsG0480022735.01
Chr4 mRNA 76113979 76115301 76113979 ID=MsG0480022735.01.T01;Parent=MsG0480022735.01;Name=MsG0480022735.01.T01;_AED=0.49;_eAED=0.49;_QI=0|-1|0|1|-1|1|1|0|440
Chr4 exon 76113979 76115301 76113979 ID=MsG0480022735.01.T01:exon:23252;Parent=MsG0480022735.01.T01
Chr4 CDS 76113979 76115301 76113979 ID=MsG0480022735.01.T01:cds;Parent=MsG0480022735.01.T01
Gene Sequence

>MsG0480022735.01.T01

ATGCAAATTCGAATTCGTAGCGGTGGCCACGACTTCGAGGGTCTATCTTTTGTTTCACATGTTCCTTTTGTCATCATTGATCTCACAAACTTTAGAGAAATTGATGTAGATGTAGAAAACAAAACTGCTTGGGTTCAATCTGGTGCAACACTTGGTGAACTTTACTACAAAATTAGCCAAAAAAGCAAAACTCTTGGTTTCCCTGCAGGTGTTTGTCCTACTGTAGGTGTTGGTGGACACTTCAGTGGTGGTGGATATGGAACCTTGTTGCGTAAATACGGTCTTGCAGCCGATAACATCATTGATGCTCACATAATTGATGTGAAAGGTAGGTTTCTTGACAGAGAAGCAATGGGTGAAGATTTGTTTTGGGCTATTAGAGGTGGTGGAGGAGCAAGTTTTGGTGTCATAGTTTCATGGAAGATAAAACTTGTTCAAGTTCCATCAACTGTAACAGTGTTTACTGTTCCAAGAACATTGGAACAAAATGCAACAAAGCTTGTTCACAGGTGGCAGTATGTAGCACATAAACTTGATGAAAACTTAGAAATTAATATTATCTTGCAAAGGCTAGATTTGAATTCAAGTAAAAAAGGTGAGCCAAAGTCAACAGTACTAGCTTTATTTCAATCCTTGTTTCTAGGAAGTGTAGATAACCTCTTACCCTTGATGGAAGAAAAGTTTCCTGAACTTGGGTTGGTTAGAGAAGATTGTGTTGAAATGAGTTGGATTGAATCGGTTCTTTACCTTTTTCGGTTTCCAGAAGGCGAACCACTTGAAACGTTGCTCAACAGAACACTAGCTGCAAAGGATAATTCCAAAGCGAAATCTGATTTTGTCAAAATTCCTATTCCTGAAACTGGTTTAGAAGGATTATGGCCTATGTTTGATGAAGATGGTGCGGAAGAGGTACTAATGGTATTGTTTCCTTATGGTGGCATAATGGATAAGATTTCAGAATCTGAAATTCCATTTCCACATAGATATGGAACCTTATACAAAATTCAGTATGCAGTGCACTGGCATCAAGAAGGTGATGAGGTGGAGAAGTTGCACATCAATTGGATTAGAAAACTTTATAGTTATATGGAACCTTTTGTTTCAAAGTCTCCAAGAGCTGCATATATTAATTATAGAGACCTTGATATTGGTGTGAATAACATTAATGGATACACAAGCTATAAGCAAGCTAGTATTTGGGGTGTTAAGTACTTCAAGAATAACTTCAAAAGATTGGCAAAAGTGAAGACCAAAGTTGATCCTCTAAACTTCTTCAGAAATGAACAGAGTATACCTTCTCATGTGTCCAAGGGACGCAAATAG

Protein sequence

>MsG0480022735.01.T01

MQIRIRSGGHDFEGLSFVSHVPFVIIDLTNFREIDVDVENKTAWVQSGATLGELYYKISQKSKTLGFPAGVCPTVGVGGHFSGGGYGTLLRKYGLAADNIIDAHIIDVKGRFLDREAMGEDLFWAIRGGGGASFGVIVSWKIKLVQVPSTVTVFTVPRTLEQNATKLVHRWQYVAHKLDENLEINIILQRLDLNSSKKGEPKSTVLALFQSLFLGSVDNLLPLMEEKFPELGLVREDCVEMSWIESVLYLFRFPEGEPLETLLNRTLAAKDNSKAKSDFVKIPIPETGLEGLWPMFDEDGAEEVLMVLFPYGGIMDKISESEIPFPHRYGTLYKIQYAVHWHQEGDEVEKLHINWIRKLYSYMEPFVSKSPRAAYINYRDLDIGVNNINGYTSYKQASIWGVKYFKNNFKRLAKVKTKVDPLNFFRNEQSIPSHVSKGRK*