Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016129.01.T01 | BBG92319.1 | 61.751 | 217 | 33 | 3 | 1 | 167 | 62 | 278 | 2.98E-79 | 250 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016129.01.T01 | P51081 | 62.009 | 229 | 25 | 3 | 1 | 167 | 59 | 287 | 5.06E-84 | 255 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016129.01.T01 | G7JA71 | 62.882 | 229 | 23 | 3 | 1 | 167 | 59 | 287 | 1.16e-82 | 258 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048345.01 | MsG0380016129.01 | 0.847875 | 8.770103e-60 | 1.580640e-56 |
| MsG0080048347.01 | MsG0380016129.01 | 0.814201 | 1.738015e-51 | 1.158681e-48 |
| MsG0080048348.01 | MsG0380016129.01 | 0.840277 | 9.581508e-58 | 1.357967e-54 |
| MsG0080048352.01 | MsG0380016129.01 | 0.810699 | 1.012502e-50 | 6.146004e-48 |
| MsG0180000437.01 | MsG0380016129.01 | 0.814552 | 1.453456e-51 | 9.782968e-49 |
| MsG0180001050.01 | MsG0380016129.01 | 0.803324 | 3.681123e-49 | 1.844368e-46 |
| MsG0180005356.01 | MsG0380016129.01 | 0.832064 | 1.170118e-55 | 1.293514e-52 |
| MsG0180005357.01 | MsG0380016129.01 | 0.831868 | 1.308109e-55 | 1.437883e-52 |
| MsG0280011350.01 | MsG0380016129.01 | 0.816227 | 6.163635e-52 | 4.342424e-49 |
| MsG0380011613.01 | MsG0380016129.01 | 0.816293 | 5.958538e-52 | 4.205713e-49 |
| MsG0380016129.01 | MsG0380016345.01 | 0.804014 | 2.647098e-49 | 1.350095e-46 |
| MsG0380016129.01 | MsG0480022680.01 | 0.813439 | 2.558524e-51 | 1.670898e-48 |
| MsG0380016129.01 | MsG0480022735.01 | 0.818179 | 2.243114e-52 | 1.667121e-49 |
| MsG0380016129.01 | MsG0480022736.01 | 0.891547 | 3.597118e-74 | 3.167888e-70 |
| MsG0380016129.01 | MsG0580024218.01 | 0.816633 | 4.999772e-52 | 3.561695e-49 |
| MsG0380016129.01 | MsG0580024344.01 | 0.806160 | 9.412510e-50 | 5.072983e-47 |
| MsG0380016129.01 | MsG0580025682.01 | 0.812748 | 3.626102e-51 | 2.324475e-48 |
| MsG0380016129.01 | MsG0780041299.01 | 0.826965 | 2.030877e-54 | 1.933791e-51 |
| MsG0380016129.01 | MsG0780041556.01 | 0.823759 | 1.165223e-53 | 1.012551e-50 |
| MsG0380016129.01 | MsG0880042810.01 | 0.801955 | 7.051441e-49 | 3.411815e-46 |
| MsG0280010436.01 | MsG0380016129.01 | 0.829953 | 3.856827e-55 | 4.006972e-52 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016129.01.T01 | MTR_3g083920 | 62.882 | 229 | 23 | 3 | 1 | 167 | 59 | 287 | 2.95e-86 | 258 |
| MsG0380016129.01.T01 | MTR_3g083910 | 60.262 | 229 | 29 | 3 | 1 | 167 | 59 | 287 | 3.33e-83 | 250 |
| MsG0380016129.01.T01 | MTR_5g007713 | 58.079 | 229 | 34 | 3 | 1 | 167 | 59 | 287 | 3.51e-81 | 245 |
| MsG0380016129.01.T01 | MTR_1g097935 | 58.079 | 229 | 34 | 3 | 1 | 167 | 59 | 287 | 3.79e-81 | 245 |
| MsG0380016129.01.T01 | MTR_1g097910 | 58.079 | 229 | 34 | 3 | 1 | 167 | 59 | 287 | 4.41e-81 | 245 |
| MsG0380016129.01.T01 | MTR_7g016800 | 58.079 | 229 | 34 | 3 | 1 | 167 | 59 | 287 | 4.82e-81 | 245 |
| MsG0380016129.01.T01 | MTR_5g007717 | 58.079 | 229 | 34 | 3 | 1 | 167 | 59 | 287 | 5.31e-81 | 245 |
| MsG0380016129.01.T01 | MTR_1g098140 | 58.079 | 229 | 34 | 3 | 1 | 167 | 59 | 287 | 5.67e-81 | 244 |
| MsG0380016129.01.T01 | MTR_7g016720 | 58.079 | 229 | 34 | 3 | 1 | 167 | 59 | 287 | 6.39e-81 | 244 |
| MsG0380016129.01.T01 | MTR_7g016820 | 58.079 | 229 | 34 | 3 | 1 | 167 | 59 | 287 | 7.12e-81 | 244 |
| MsG0380016129.01.T01 | MTR_7g016780 | 58.079 | 229 | 34 | 3 | 1 | 167 | 59 | 287 | 8.75e-81 | 244 |
| MsG0380016129.01.T01 | MTR_7g016700 | 57.642 | 229 | 35 | 3 | 1 | 167 | 59 | 287 | 9.54e-81 | 244 |
| MsG0380016129.01.T01 | MTR_5g007730 | 57.642 | 229 | 35 | 3 | 1 | 167 | 59 | 287 | 1.64e-80 | 243 |
| MsG0380016129.01.T01 | MTR_5g007760 | 57.642 | 229 | 35 | 3 | 1 | 167 | 59 | 287 | 1.29e-79 | 241 |
| MsG0380016129.01.T01 | MTR_3g086260 | 54.585 | 229 | 42 | 3 | 1 | 167 | 59 | 287 | 8.11e-73 | 224 |
| MsG0380016129.01.T01 | MTR_2g058470 | 53.712 | 229 | 44 | 3 | 1 | 167 | 59 | 287 | 5.69e-72 | 222 |
| MsG0380016129.01.T01 | MTR_7g084300 | 52.609 | 230 | 47 | 3 | 1 | 168 | 59 | 288 | 8.41e-72 | 221 |
| MsG0380016129.01.T01 | MTR_5g007740 | 47.768 | 224 | 55 | 3 | 6 | 167 | 1 | 224 | 2.83e-58 | 185 |
| MsG0380016129.01.T01 | MTR_7g113405 | 52.239 | 201 | 34 | 3 | 29 | 167 | 1 | 201 | 1.03e-56 | 180 |
| MsG0380016129.01.T01 | MTR_3g088675 | 44.541 | 229 | 65 | 3 | 1 | 167 | 59 | 287 | 3.68e-56 | 181 |
| MsG0380016129.01.T01 | MTR_5g007770 | 48.259 | 201 | 42 | 3 | 12 | 150 | 1 | 201 | 1.05e-52 | 169 |
| MsG0380016129.01.T01 | MTR_5g007723 | 45.771 | 201 | 73 | 5 | 2 | 167 | 97 | 296 | 1.29e-49 | 164 |
| MsG0380016129.01.T01 | MTR_4g075560 | 29.565 | 230 | 94 | 4 | 1 | 165 | 60 | 286 | 5.45e-26 | 102 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016129.01.T01 | AT5G13930 | 53.478 | 230 | 44 | 4 | 1 | 167 | 64 | 293 | 3.09e-69 | 215 |
| MsG0380016129.01.T01 | AT4G34850 | 30.396 | 227 | 90 | 5 | 1 | 162 | 61 | 284 | 5.97e-25 | 99.4 |
| MsG0380016129.01.T01 | AT4G34850 | 30.374 | 214 | 81 | 5 | 14 | 162 | 1 | 211 | 5.73e-21 | 87.8 |
Find 58 sgRNAs with CRISPR-Local
Find 81 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATGAACTTAAGAAGAATT+TGG | 0.237520 | 3:+79417022 | None:intergenic |
| AACAAAGGCTTCTCAACTTC+TGG | 0.283514 | 3:+79416202 | None:intergenic |
| CATCATAGCCCTTCACTATC+TGG | 0.302856 | 3:+79416149 | None:intergenic |
| TCTTGTGGGGCAGGCATGTT+TGG | 0.341798 | 3:-79416265 | MsG0380016129.01.T01:intron |
| GCTTCGTTTGGCTAAAGATT+TGG | 0.342769 | 3:-79416377 | MsG0380016129.01.T01:CDS |
| GGCTTTCAGCTCTCTGTGCC+TGG | 0.347822 | 3:+79416953 | None:intergenic |
| CATCTCCTCAAGGATGTTCC+TGG | 0.370213 | 3:-79416097 | MsG0380016129.01.T01:CDS |
| AAGCCTTTGTTTGAATGGTT+TGG | 0.377148 | 3:-79416190 | MsG0380016129.01.T01:CDS |
| ATTTGGTTGGTAAGAGAAGA+AGG | 0.388826 | 3:+79417039 | None:intergenic |
| CCTGCCACTGTCTTTGCAAT+AGG | 0.391107 | 3:-79416932 | MsG0380016129.01.T01:five_prime_UTR |
| ATTGGATGCAAGACAGGATA+TGG | 0.394068 | 3:-79416615 | MsG0380016129.01.T01:CDS |
| TTGAGAAGCCTTTGTTTGAA+TGG | 0.402664 | 3:-79416195 | MsG0380016129.01.T01:CDS |
| CGTTATATGATGTATCAAAA+AGG | 0.407162 | 3:-79416421 | MsG0380016129.01.T01:CDS |
| TGAGTACATGGCACCTTCAT+TGG | 0.415295 | 3:-79416633 | MsG0380016129.01.T01:CDS |
| AACAAAGGCTATCAAGGAAT+GGG | 0.424210 | 3:-79416555 | MsG0380016129.01.T01:CDS |
| TGGTGGCACGGTGCTTCGTT+TGG | 0.426992 | 3:-79416389 | MsG0380016129.01.T01:CDS |
| ATGTTCTTTGAGACGAGGCC+AGG | 0.453712 | 3:+79416079 | None:intergenic |
| ACCTTCATTGGATGCAAGAC+AGG | 0.464180 | 3:-79416621 | MsG0380016129.01.T01:CDS |
| GGCTGCAACAAAGGCTATCA+AGG | 0.472973 | 3:-79416561 | MsG0380016129.01.T01:CDS |
| ATCATATAACGCTTCACAGA+CGG | 0.478105 | 3:+79416433 | None:intergenic |
| CAGATAGTGAAGGGCTATGA+TGG | 0.484821 | 3:-79416148 | MsG0380016129.01.T01:CDS |
| ATTTATATTCTTCATTGTGA+TGG | 0.492915 | 3:-79416995 | MsG0380016129.01.T01:five_prime_UTR |
| CCTATTGCAAAGACAGTGGC+AGG | 0.496706 | 3:+79416932 | None:intergenic |
| GGTGCAGCAGCTGTGATTGT+TGG | 0.502726 | 3:-79416238 | MsG0380016129.01.T01:CDS |
| AGGAAAAGAGGCTGCAACAA+AGG | 0.503571 | 3:-79416570 | MsG0380016129.01.T01:CDS |
| TCATATAACGCTTCACAGAC+GGG | 0.503757 | 3:+79416434 | None:intergenic |
| CAACAAAGGCTATCAAGGAA+TGG | 0.506508 | 3:-79416556 | MsG0380016129.01.T01:CDS |
| GAACTTAAGAAGAATTTGGT+TGG | 0.506904 | 3:+79417026 | None:intergenic |
| GGGGCAGGCATGTTTGGAGA+TGG | 0.507939 | 3:-79416259 | MsG0380016129.01.T01:intron |
| TCCTGTCTTGCATCCAATGA+AGG | 0.510738 | 3:+79416620 | None:intergenic |
| GATGGTCACCTTCGAGAAGC+AGG | 0.523036 | 3:-79416130 | MsG0380016129.01.T01:CDS |
| CAGGAACATCCTTGAGGAGA+TGG | 0.526587 | 3:+79416098 | None:intergenic |
| TGTGTTCACTGTTTGTGATA+CGG | 0.533500 | 3:+79416856 | None:intergenic |
| TGTGATACGGAAGTAAAGTC+AGG | 0.543563 | 3:+79416869 | None:intergenic |
| GGCTTCTCAACTTCTGGCAA+CGG | 0.544110 | 3:+79416208 | None:intergenic |
| TATATATCTTACACATGCGC+TGG | 0.547544 | 3:+79416811 | None:intergenic |
| TCCTAGTTTATGTGAGTACA+TGG | 0.548879 | 3:-79416645 | MsG0380016129.01.T01:CDS |
| AGTACCAAAGCTAGGAAAAG+AGG | 0.551914 | 3:-79416582 | MsG0380016129.01.T01:CDS |
| TTTGACTGAAGAGATTCTGA+AGG | 0.562158 | 3:-79416672 | MsG0380016129.01.T01:CDS |
| AAGACAGGATATGGTGGTTG+TGG | 0.581715 | 3:-79416606 | MsG0380016129.01.T01:CDS |
| GACAGTGAATGAGATACGCC+AGG | 0.598521 | 3:-79416971 | MsG0380016129.01.T01:five_prime_UTR |
| TTGACTGAAGAGATTCTGAA+GGG | 0.603023 | 3:-79416671 | MsG0380016129.01.T01:CDS |
| TTGTGTGAGAAAATGTTGTG+TGG | 0.603818 | 3:+79417086 | None:intergenic |
| TCTCAATGTTCTTTGAGACG+AGG | 0.604924 | 3:+79416074 | None:intergenic |
| CAATCGTTCCAGATAGTGAA+GGG | 0.608661 | 3:-79416157 | MsG0380016129.01.T01:CDS |
| ATGTCAGTCCTGCTTCTCGA+AGG | 0.612769 | 3:+79416122 | None:intergenic |
| ACTGACATTCCATCTCCTCA+AGG | 0.613763 | 3:-79416107 | MsG0380016129.01.T01:CDS |
| GTTGTGGAAGTACCAAAGCT+AGG | 0.617435 | 3:-79416590 | MsG0380016129.01.T01:CDS |
| ACAATCGTTCCAGATAGTGA+AGG | 0.620808 | 3:-79416158 | MsG0380016129.01.T01:CDS |
| GCCATGTACTCACATAAACT+AGG | 0.622323 | 3:+79416644 | None:intergenic |
| TGACTGAAGAGATTCTGAAG+GGG | 0.645559 | 3:-79416670 | MsG0380016129.01.T01:CDS |
| ACATTGAGAAGCTCTTGTTG+AGG | 0.652597 | 3:-79416060 | MsG0380016129.01.T01:CDS |
| AGTCCAAACCATTCAAACAA+AGG | 0.662757 | 3:+79416187 | None:intergenic |
| ACAAAGGCTATCAAGGAATG+GGG | 0.667647 | 3:-79416554 | MsG0380016129.01.T01:intron |
| CGAGGCCAGGAACATCCTTG+AGG | 0.671207 | 3:+79416092 | None:intergenic |
| GATTTGGCTGAAAACAACAA+AGG | 0.694413 | 3:-79416361 | MsG0380016129.01.T01:intron |
| AGTGCCTATTGCAAAGACAG+TGG | 0.727850 | 3:+79416928 | None:intergenic |
| GGATGCAAGACAGGATATGG+TGG | 0.728808 | 3:-79416612 | MsG0380016129.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CACATAAAGATATATAATAT+AGG | + | Chr3:79416361-79416380 | None:intergenic | 15.0% |
| !! | AAATGAACTTAAGAAGAATT+TGG | + | Chr3:79416121-79416140 | None:intergenic | 20.0% |
| !! | ATTTATATTCTTCATTGTGA+TGG | - | Chr3:79416145-79416164 | MsG0380016129.01.T01:CDS | 20.0% |
| ! | CGTTATATGATGTATCAAAA+AGG | - | Chr3:79416719-79416738 | MsG0380016129.01.T01:intron | 25.0% |
| GAACTTAAGAAGAATTTGGT+TGG | + | Chr3:79416117-79416136 | None:intergenic | 30.0% | |
| ! | TTATGCTGTGTATGATTTTC+AGG | - | Chr3:79416412-79416431 | MsG0380016129.01.T01:CDS | 30.0% |
| !! | TATCAAAAAGGTTGTTTTGC+TGG | - | Chr3:79416731-79416750 | MsG0380016129.01.T01:intron | 30.0% |
| AACAAAGGCTATCAAGGAAT+GGG | - | Chr3:79416585-79416604 | MsG0380016129.01.T01:CDS | 35.0% | |
| ACTATCAGATGAGTATCACT+AGG | + | Chr3:79416856-79416875 | None:intergenic | 35.0% | |
| AGTCCAAACCATTCAAACAA+AGG | + | Chr3:79416956-79416975 | None:intergenic | 35.0% | |
| ATCATATAACGCTTCACAGA+CGG | + | Chr3:79416710-79416729 | None:intergenic | 35.0% | |
| GATTTGGCTGAAAACAACAA+AGG | - | Chr3:79416779-79416798 | MsG0380016129.01.T01:intron | 35.0% | |
| TATATATCTTACACATGCGC+TGG | + | Chr3:79416332-79416351 | None:intergenic | 35.0% | |
| TATCAGCTCACAAAGCTATT+AGG | - | Chr3:79416677-79416696 | MsG0380016129.01.T01:CDS | 35.0% | |
| TCCTAGTTTATGTGAGTACA+TGG | - | Chr3:79416495-79416514 | MsG0380016129.01.T01:intron | 35.0% | |
| TGTGTTCACTGTTTGTGATA+CGG | + | Chr3:79416287-79416306 | None:intergenic | 35.0% | |
| TTGACTGAAGAGATTCTGAA+GGG | - | Chr3:79416469-79416488 | MsG0380016129.01.T01:intron | 35.0% | |
| TTGTGTGAGAAAATGTTGTG+TGG | + | Chr3:79416057-79416076 | None:intergenic | 35.0% | |
| TTTGACTGAAGAGATTCTGA+AGG | - | Chr3:79416468-79416487 | MsG0380016129.01.T01:intron | 35.0% | |
| ! | AAGCCTTTGTTTGAATGGTT+TGG | - | Chr3:79416950-79416969 | MsG0380016129.01.T01:five_prime_UTR | 35.0% |
| ! | ATACTCATCTGATAGTCTTG+TGG | - | Chr3:79416860-79416879 | MsG0380016129.01.T01:five_prime_UTR | 35.0% |
| ! | TCTAATTTTTGCACCACAAG+TGG | - | Chr3:79416632-79416651 | MsG0380016129.01.T01:CDS | 35.0% |
| ! | TTGAGAAGCCTTTGTTTGAA+TGG | - | Chr3:79416945-79416964 | MsG0380016129.01.T01:five_prime_UTR | 35.0% |
| !! | ATTTGGTTGGTAAGAGAAGA+AGG | + | Chr3:79416104-79416123 | None:intergenic | 35.0% |
| !! | TACTCATCTGATAGTCTTGT+GGG | - | Chr3:79416861-79416880 | MsG0380016129.01.T01:five_prime_UTR | 35.0% |
| AACAAAGGCTTCTCAACTTC+TGG | + | Chr3:79416941-79416960 | None:intergenic | 40.0% | |
| ACAAAGGCTATCAAGGAATG+GGG | - | Chr3:79416586-79416605 | MsG0380016129.01.T01:CDS | 40.0% | |
| ACAATCGTTCCAGATAGTGA+AGG | - | Chr3:79416982-79417001 | MsG0380016129.01.T01:five_prime_UTR | 40.0% | |
| ACATTGAGAAGCTCTTGTTG+AGG | - | Chr3:79417080-79417099 | MsG0380016129.01.T01:five_prime_UTR | 40.0% | |
| AGTACCAAAGCTAGGAAAAG+AGG | - | Chr3:79416558-79416577 | MsG0380016129.01.T01:CDS | 40.0% | |
| ATTGGATGCAAGACAGGATA+TGG | - | Chr3:79416525-79416544 | MsG0380016129.01.T01:intron | 40.0% | |
| CAACAAAGGCTATCAAGGAA+TGG | - | Chr3:79416584-79416603 | MsG0380016129.01.T01:CDS | 40.0% | |
| CAATCGTTCCAGATAGTGAA+GGG | - | Chr3:79416983-79417002 | MsG0380016129.01.T01:five_prime_UTR | 40.0% | |
| GCCATGTACTCACATAAACT+AGG | + | Chr3:79416499-79416518 | None:intergenic | 40.0% | |
| GCTTCGTTTGGCTAAAGATT+TGG | - | Chr3:79416763-79416782 | MsG0380016129.01.T01:intron | 40.0% | |
| TCATATAACGCTTCACAGAC+GGG | + | Chr3:79416709-79416728 | None:intergenic | 40.0% | |
| TGTGATACGGAAGTAAAGTC+AGG | + | Chr3:79416274-79416293 | None:intergenic | 40.0% | |
| ! | CTCTGATCAACACAGTTTTG+AGG | + | Chr3:79416244-79416263 | None:intergenic | 40.0% |
| ! | TGACTGAAGAGATTCTGAAG+GGG | - | Chr3:79416470-79416489 | MsG0380016129.01.T01:intron | 40.0% |
| !! | ACTCATCTGATAGTCTTGTG+GGG | - | Chr3:79416862-79416881 | MsG0380016129.01.T01:five_prime_UTR | 40.0% |
| !! | CAAAAAGGTTGTTTTGCTGG+TGG | - | Chr3:79416734-79416753 | MsG0380016129.01.T01:intron | 40.0% |
| !! | TCTCAATGTTCTTTGAGACG+AGG | + | Chr3:79417069-79417088 | None:intergenic | 40.0% |
| !!! | ACAACAAAGGTGCTGTGTTT+TGG | - | Chr3:79416792-79416811 | MsG0380016129.01.T01:intron | 40.0% |
| !!! | CTGTGTTTTGGTGGTTTGTT+CGG | - | Chr3:79416804-79416823 | MsG0380016129.01.T01:intron | 40.0% |
| AAGACAGGATATGGTGGTTG+TGG | - | Chr3:79416534-79416553 | MsG0380016129.01.T01:intron | 45.0% | |
| ACCTTCATTGGATGCAAGAC+AGG | - | Chr3:79416519-79416538 | MsG0380016129.01.T01:intron | 45.0% | |
| ACTGACATTCCATCTCCTCA+AGG | - | Chr3:79417033-79417052 | MsG0380016129.01.T01:five_prime_UTR | 45.0% | |
| AGGAAAAGAGGCTGCAACAA+AGG | - | Chr3:79416570-79416589 | MsG0380016129.01.T01:CDS | 45.0% | |
| AGTGCCTATTGCAAAGACAG+TGG | + | Chr3:79416215-79416234 | None:intergenic | 45.0% | |
| CAGATAGTGAAGGGCTATGA+TGG | - | Chr3:79416992-79417011 | MsG0380016129.01.T01:five_prime_UTR | 45.0% | |
| CATCATAGCCCTTCACTATC+TGG | + | Chr3:79416994-79417013 | None:intergenic | 45.0% | |
| GATGAGTATCACTAGGTCCA+CGG | + | Chr3:79416849-79416868 | None:intergenic | 45.0% | |
| TCCTGTCTTGCATCCAATGA+AGG | + | Chr3:79416523-79416542 | None:intergenic | 45.0% | |
| TGAGTACATGGCACCTTCAT+TGG | - | Chr3:79416507-79416526 | MsG0380016129.01.T01:intron | 45.0% | |
| ! | ATCACTGCAGTTACTTTCCG+TGG | - | Chr3:79416829-79416848 | MsG0380016129.01.T01:five_prime_UTR | 45.0% |
| ! | TTTTTGCACCACAAGTGGTG+TGG | - | Chr3:79416637-79416656 | MsG0380016129.01.T01:CDS | 45.0% |
| !! | GTTGTGGAAGTACCAAAGCT+AGG | - | Chr3:79416550-79416569 | MsG0380016129.01.T01:intron | 45.0% |
| !!! | ACAAAGGTGCTGTGTTTTGG+TGG | - | Chr3:79416795-79416814 | MsG0380016129.01.T01:intron | 45.0% |
| ACAAGTGGTGTGGATATGCC+TGG | - | Chr3:79416647-79416666 | MsG0380016129.01.T01:CDS | 50.0% | |
| AGGCATATCCACACCACTTG+TGG | + | Chr3:79416648-79416667 | None:intergenic | 50.0% | |
| ATGTCAGTCCTGCTTCTCGA+AGG | + | Chr3:79417021-79417040 | None:intergenic | 50.0% | |
| CAGGAACATCCTTGAGGAGA+TGG | + | Chr3:79417045-79417064 | None:intergenic | 50.0% | |
| CATCTCCTCAAGGATGTTCC+TGG | - | Chr3:79417043-79417062 | MsG0380016129.01.T01:five_prime_UTR | 50.0% | |
| CCTATTGCAAAGACAGTGGC+AGG | + | Chr3:79416211-79416230 | None:intergenic | 50.0% | |
| CCTGCCACTGTCTTTGCAAT+AGG | - | Chr3:79416208-79416227 | MsG0380016129.01.T01:CDS | 50.0% | |
| GACAGTGAATGAGATACGCC+AGG | - | Chr3:79416169-79416188 | MsG0380016129.01.T01:CDS | 50.0% | |
| GGATGCAAGACAGGATATGG+TGG | - | Chr3:79416528-79416547 | MsG0380016129.01.T01:intron | 50.0% | |
| GGCTGCAACAAAGGCTATCA+AGG | - | Chr3:79416579-79416598 | MsG0380016129.01.T01:CDS | 50.0% | |
| GGCTTCTCAACTTCTGGCAA+CGG | + | Chr3:79416935-79416954 | None:intergenic | 50.0% | |
| ! | GCAGCCTCTTTTCCTAGCTT+TGG | + | Chr3:79416565-79416584 | None:intergenic | 50.0% |
| !! | AGGTTGTTTTGCTGGTGGCA+CGG | - | Chr3:79416739-79416758 | MsG0380016129.01.T01:intron | 50.0% |
| !! | ATCTGATAGTCTTGTGGGGC+AGG | - | Chr3:79416866-79416885 | MsG0380016129.01.T01:five_prime_UTR | 50.0% |
| !! | ATGTTCTTTGAGACGAGGCC+AGG | + | Chr3:79417064-79417083 | None:intergenic | 50.0% |
| GATGGTCACCTTCGAGAAGC+AGG | - | Chr3:79417010-79417029 | MsG0380016129.01.T01:five_prime_UTR | 55.0% | |
| GGTGCAGCAGCTGTGATTGT+TGG | - | Chr3:79416902-79416921 | MsG0380016129.01.T01:five_prime_UTR | 55.0% | |
| GTGAGCTGATAGTCAGCACC+AGG | + | Chr3:79416668-79416687 | None:intergenic | 55.0% | |
| TCTTGTGGGGCAGGCATGTT+TGG | - | Chr3:79416875-79416894 | MsG0380016129.01.T01:five_prime_UTR | 55.0% | |
| CGAGGCCAGGAACATCCTTG+AGG | + | Chr3:79417051-79417070 | None:intergenic | 60.0% | |
| GGCTTTCAGCTCTCTGTGCC+TGG | + | Chr3:79416190-79416209 | None:intergenic | 60.0% | |
| GGGGCAGGCATGTTTGGAGA+TGG | - | Chr3:79416881-79416900 | MsG0380016129.01.T01:five_prime_UTR | 60.0% | |
| TGGTGGCACGGTGCTTCGTT+TGG | - | Chr3:79416751-79416770 | MsG0380016129.01.T01:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 79416045 | 79417117 | 79416045 | ID=MsG0380016129.01;Name=MsG0380016129.01 |
| Chr3 | mRNA | 79416045 | 79417117 | 79416045 | ID=MsG0380016129.01.T01;Parent=MsG0380016129.01;Name=MsG0380016129.01.T01;_AED=0.44;_eAED=0.44;_QI=291|0.33|0.25|1|0.66|0.75|4|0|169 |
| Chr3 | exon | 79416045 | 79416274 | 79416045 | ID=MsG0380016129.01.T01:exon:18013;Parent=MsG0380016129.01.T01 |
| Chr3 | exon | 79416362 | 79416463 | 79416362 | ID=MsG0380016129.01.T01:exon:18012;Parent=MsG0380016129.01.T01 |
| Chr3 | exon | 79416555 | 79416728 | 79416555 | ID=MsG0380016129.01.T01:exon:18011;Parent=MsG0380016129.01.T01 |
| Chr3 | exon | 79416823 | 79417117 | 79416823 | ID=MsG0380016129.01.T01:exon:18010;Parent=MsG0380016129.01.T01 |
| Chr3 | five_prime_UTR | 79416827 | 79417117 | 79416827 | ID=MsG0380016129.01.T01:five_prime_utr;Parent=MsG0380016129.01.T01 |
| Chr3 | CDS | 79416823 | 79416826 | 79416823 | ID=MsG0380016129.01.T01:cds;Parent=MsG0380016129.01.T01 |
| Chr3 | CDS | 79416555 | 79416728 | 79416555 | ID=MsG0380016129.01.T01:cds;Parent=MsG0380016129.01.T01 |
| Chr3 | CDS | 79416362 | 79416463 | 79416362 | ID=MsG0380016129.01.T01:cds;Parent=MsG0380016129.01.T01 |
| Chr3 | CDS | 79416045 | 79416274 | 79416045 | ID=MsG0380016129.01.T01:cds;Parent=MsG0380016129.01.T01 |
| Gene Sequence |
| Protein sequence |
