AlfalfaGEDB | MsG0280010533.01

M. sativa cultivar ZhongmuNo.1 / MsG0280010533.01

KEGG: -
GO: GO:0005515
PFAM: PF12799

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280010533.01.T01	GAU22363.1	96.629	89	3	0	1	89	1	89	1.81E-49	172

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280010533.01.T01	A0A2Z6LY30	96.629	89	3	0	1	89	1	89	8.66e-50	172

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048291.01	MsG0280010533.01	0.804106	2.532598e-49	1.294743e-46
MsG0080048298.01	MsG0280010533.01	0.804144	2.486687e-49	1.272513e-46
MsG0080048461.01	MsG0280010533.01	0.819625	1.052640e-52	8.142445e-50
MsG0080048462.01	MsG0280010533.01	0.802748	4.842204e-49	2.390826e-46
MsG0080048774.01	MsG0280010533.01	0.806163	9.397722e-50	5.065439e-47
MsG0080048785.01	MsG0280010533.01	0.801693	7.983324e-49	3.837022e-46
MsG0080048787.01	MsG0280010533.01	0.845006	5.313892e-59	8.734230e-56
MsG0080048855.01	MsG0280010533.01	0.803831	2.889142e-49	1.466641e-46
MsG0080048856.01	MsG0280010533.01	0.819200	1.316156e-52	1.006095e-49
MsG0180000001.01	MsG0280010533.01	0.806369	8.504826e-50	4.608037e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280010533.01.T01	MTR_2g086950	95.506	89	4	0	1	89	1	89	7.57e-52	168

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280010533.01.T01	AT5G22320	65.169	89	31	0	1	89	1	89	5.06e-34	121
MsG0280010533.01.T01	AT5G22320	65.169	89	31	0	1	89	1	89	6.56e-34	120

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Find 17 sgRNAs with CRISPR-Local

Find 39 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AATAAATTAGAAAGCTTGGA+AGG	0.526330	2:+71048667	MsG0280010533.01.T01:CDS
ACTGGAAATTGAACTTGGAT+TGG	0.499943	2:-71048302	None:intergenic
CAATAATCTCACTTCACTTG+AGG	0.539721	2:+71048500	MsG0280010533.01.T01:CDS
CGGAAAGAGCTTTGTGAGTG+AGG	0.545351	2:-71048330	None:intergenic
CTTAGCCAGCTTCAATAAAT+TGG	0.169541	2:+71048458	MsG0280010533.01.T01:CDS
GAAAGCTTGGAAGGAATTCA+AGG	0.449690	2:+71048676	MsG0280010533.01.T01:CDS
GCTGTCGTTCAATACTTGCT+CGG	0.536067	2:-71048272	None:intergenic
GGAAATTGAACTTGGATTGG+CGG	0.520167	2:-71048299	None:intergenic
GGAGAATAAATTAGAAAGCT+TGG	0.390492	2:+71048663	MsG0280010533.01.T01:CDS
GGGCATGTGTTAATTTGAAG+TGG	0.617171	2:+71048629	MsG0280010533.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GGAGAATAAATTAGAAAGCT+TGG	+	Chr2:71048663-71048682	MsG0280010533.01.T01:CDS	30.0%
TTAATCTTTGTTCATTTCCC+AGG	+	Chr2:71048428-71048447	MsG0280010533.01.T01:intron	30.0%
ACTGGAAATTGAACTTGGAT+TGG	-	Chr2:71048305-71048324	None:intergenic	35.0%
AGGGGTTTAGAGAAAAGAAA+AGG	-	Chr2:71048376-71048395	None:intergenic	35.0%
CAATAATCTCACTTCACTTG+AGG	+	Chr2:71048500-71048519	MsG0280010533.01.T01:CDS	35.0%
CTTAGCCAGCTTCAATAAAT+TGG	+	Chr2:71048458-71048477	MsG0280010533.01.T01:CDS	35.0%
GGGGTTTAGAGAAAAGAAAA+GGG	-	Chr2:71048375-71048394	None:intergenic	35.0%
GGGTTTAGAGAAAAGAAAAG+GGG	-	Chr2:71048374-71048393	None:intergenic	35.0%
GGTTTAGAGAAAAGAAAAGG+GGG	-	Chr2:71048373-71048392	None:intergenic	35.0%
TATGGTGTAAAAGGGATTGA+GGG	+	Chr2:71048609-71048628	MsG0280010533.01.T01:intron	35.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	71048200	71048726	71048200	ID=MsG0280010533.01;Name=MsG0280010533.01
Chr2	mRNA	71048200	71048726	71048200	ID=MsG0280010533.01.T01;Parent=MsG0280010533.01;Name=MsG0280010533.01.T01;_AED=0.49;_eAED=0.50;_QI=56\|1\|0.66\|1\|0.5\|0.66\|3\|0\|91
Chr2	exon	71048200	71048354	71048200	ID=MsG0280010533.01.T01:exon:10389;Parent=MsG0280010533.01.T01
Chr2	exon	71048450	71048521	71048450	ID=MsG0280010533.01.T01:exon:10390;Parent=MsG0280010533.01.T01
Chr2	exon	71048622	71048726	71048622	ID=MsG0280010533.01.T01:exon:10391;Parent=MsG0280010533.01.T01
Chr2	five_prime_UTR	71048200	71048255	71048200	ID=MsG0280010533.01.T01:five_prime_utr;Parent=MsG0280010533.01.T01
Chr2	CDS	71048256	71048354	71048256	ID=MsG0280010533.01.T01:cds;Parent=MsG0280010533.01.T01
Chr2	CDS	71048450	71048521	71048450	ID=MsG0280010533.01.T01:cds;Parent=MsG0280010533.01.T01
Chr2	CDS	71048622	71048726	71048622	ID=MsG0280010533.01.T01:cds;Parent=MsG0280010533.01.T01

Gene Sequence	>MsG0280010533.01.T01 ATGACTCGTTTGAGCTCCGAGCAAGTATTGAACGACAGCAATGCCGCCAATCCAAGTTCAATTTCCAGTCTTCACCTCACTCACAAAGCTCTTTCCGATGTATCATGCTTAGCCAGCTTCAATAAATTGGAAAAGCTTGATCTAAAATTCAATAATCTCACTTCACTTGAGGGATTGAGGGCATGTGTTAATTTGAAGTGGTTATCAGTTGTGGAGAATAAATTAGAAAGCTTGGAAGGAATTCAAGGACTTACTAAGCTTACTGTAAGTACCTAG
Protein sequence	>MsG0280010533.01.T01 MTRLSSEQVLNDSNAANPSSISSLHLTHKALSDVSCLASFNKLEKLDLKFNNLTSLEGLRACVNLKWLSVVENKLESLEGIQGLTKLTVST*