AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180000001.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000001.01.T01 MTR_1g026590 100.000 241 0 0 181 421 105 345 4.57e-173 488
MsG0180000001.01.T01 MTR_1g026590 98.113 106 2 0 1 106 1 106 1.75e-65 213
MsG0180000001.01.T01 MTR_5g004620 78.750 240 51 0 181 420 108 347 4.14e-125 366
MsG0180000001.01.T01 MTR_5g004620 79.612 103 20 1 5 106 7 109 8.32e-50 172
MsG0180000001.01.T01 MTR_8g092190 50.000 232 106 2 181 411 105 327 2.92e-69 223
MsG0180000001.01.T01 MTR_8g092190 55.102 98 42 1 12 109 14 109 3.03e-23 100
MsG0180000001.01.T01 MTR_3g095130 50.000 218 100 3 181 392 56 270 1.16e-67 217
MsG0180000001.01.T01 MTR_3g095130 50.000 218 100 3 181 392 105 319 1.35e-67 218
MsG0180000001.01.T01 MTR_3g095130 48.246 114 55 2 2 115 6 115 4.92e-23 99.8
MsG0180000001.01.T01 MTR_1g098240 51.852 216 97 3 181 392 105 317 1.76e-62 204
MsG0180000001.01.T01 MTR_1g098240 53.704 108 46 2 2 109 6 109 3.40e-25 105
MsG0180000001.01.T01 MTR_3g094260 38.725 204 125 0 181 384 102 305 2.41e-47 166
MsG0180000001.01.T01 MTR_4g058860 35.065 231 142 1 181 411 102 324 2.70e-44 157
MsG0180000001.01.T01 MTR_2g094640 38.144 194 120 0 181 374 102 295 1.11e-43 156
MsG0180000001.01.T01 MTR_3g094270 34.177 237 147 3 181 417 102 329 1.28e-42 153
MsG0180000001.01.T01 MTR_5g096310 31.111 225 148 3 181 404 151 369 1.25e-16 81.6
MsG0180000001.01.T01 MTR_2g038410 29.694 229 148 7 181 408 150 366 1.41e-16 81.3
MsG0180000001.01.T01 MTR_3g072380 23.963 217 163 2 193 408 123 338 4.24e-15 76.6
MsG0180000001.01.T01 MTR_1g030320 23.451 226 161 5 193 413 122 340 6.35e-13 70.1
MsG0180000001.01.T01 MTR_3g099230 71.053 38 11 0 129 166 26 63 8.40e-13 63.5
MsG0180000001.01.T01 MTR_1291s0010 43.011 93 51 1 14 106 13 103 4.18e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000001.01.T01 AT1G21070 79.583 240 49 0 181 420 108 347 4.71e-134 389
MsG0180000001.01.T01 AT1G21070 80.000 105 21 0 2 106 5 109 9.58e-52 177
MsG0180000001.01.T01 AT1G76670 79.167 240 50 0 181 420 107 346 1.45e-131 382
MsG0180000001.01.T01 AT1G76670 80.952 105 19 1 2 106 5 108 2.69e-50 174
MsG0180000001.01.T01 AT1G76670 79.167 240 50 0 181 420 107 346 1.45e-131 382
MsG0180000001.01.T01 AT1G76670 80.952 105 19 1 2 106 5 108 2.69e-50 174
MsG0180000001.01.T01 AT5G42420 76.860 242 54 1 181 420 108 349 1.98e-126 369
MsG0180000001.01.T01 AT5G42420 79.245 106 21 1 2 106 4 109 4.29e-52 178
MsG0180000001.01.T01 AT5G42420 73.988 173 43 1 250 420 110 282 2.07e-87 267
MsG0180000001.01.T01 AT5G42420 79.245 106 21 1 2 106 4 109 2.06e-52 177
MsG0180000001.01.T01 AT4G09810 50.459 218 99 3 181 392 48 262 1.24e-68 219
MsG0180000001.01.T01 AT4G09810 50.459 218 99 3 181 392 105 319 2.75e-68 220
MsG0180000001.01.T01 AT4G09810 53.704 108 46 2 2 109 6 109 4.67e-25 105
MsG0180000001.01.T01 AT4G39390 47.534 223 108 3 181 397 106 325 1.21e-66 216
MsG0180000001.01.T01 AT4G39390 47.664 107 54 1 3 109 6 110 2.00e-19 89.4
MsG0180000001.01.T01 AT4G39390 47.534 223 108 3 181 397 110 329 1.61e-66 216
MsG0180000001.01.T01 AT4G39390 47.664 107 54 1 3 109 10 114 2.07e-19 89.4
MsG0180000001.01.T01 AT4G39390 47.534 223 108 3 181 397 110 329 1.61e-66 216
MsG0180000001.01.T01 AT4G39390 47.664 107 54 1 3 109 10 114 2.07e-19 89.4
MsG0180000001.01.T01 AT1G34020 49.083 218 102 3 181 392 105 319 1.18e-65 213
MsG0180000001.01.T01 AT1G34020 57.447 94 38 1 16 109 18 109 2.61e-23 100
MsG0180000001.01.T01 AT1G34020 49.083 218 102 3 181 392 105 319 1.18e-65 213
MsG0180000001.01.T01 AT1G34020 57.447 94 38 1 16 109 18 109 2.61e-23 100
MsG0180000001.01.T01 AT1G34020 49.083 218 102 3 181 392 105 319 1.18e-65 213
MsG0180000001.01.T01 AT1G34020 57.447 94 38 1 16 109 18 109 2.61e-23 100
MsG0180000001.01.T01 AT2G30460 39.450 218 132 0 181 398 81 298 2.23e-51 176
MsG0180000001.01.T01 AT2G30460 39.450 218 132 0 181 398 81 298 2.23e-51 176
MsG0180000001.01.T01 AT2G30460 39.450 218 132 0 181 398 81 298 2.23e-51 176
MsG0180000001.01.T01 AT2G30460 39.450 218 132 0 181 398 102 319 2.58e-51 176
MsG0180000001.01.T01 AT2G30460 39.450 218 132 0 181 398 102 319 2.58e-51 176
MsG0180000001.01.T01 AT1G06890 37.553 237 139 2 181 417 102 329 9.79e-50 172
MsG0180000001.01.T01 AT1G06890 37.553 237 139 2 181 417 102 329 1.20e-49 172
MsG0180000001.01.T01 AT1G06890 37.553 237 139 2 181 417 102 329 1.22e-49 172
MsG0180000001.01.T01 AT1G06890 37.553 237 139 2 181 417 102 329 1.22e-49 172
MsG0180000001.01.T01 AT2G28315 39.175 194 118 0 181 374 102 295 1.07e-43 156
MsG0180000001.01.T01 AT2G28315 40.741 108 62 1 4 111 3 108 9.10e-12 66.6
MsG0180000001.01.T01 AT2G28315 39.175 194 118 0 181 374 102 295 1.99e-43 154
MsG0180000001.01.T01 AT2G28315 40.777 103 59 1 4 106 3 103 1.00e-11 66.2
MsG0180000001.01.T01 AT4G09810 53.659 123 57 0 181 303 105 227 1.65e-37 136
MsG0180000001.01.T01 AT4G09810 53.704 108 46 2 2 109 6 109 5.62e-26 105
MsG0180000001.01.T01 AT2G30460 37.398 123 77 0 181 303 102 224 6.84e-23 99.4
MsG0180000001.01.T01 AT5G55950 28.947 228 152 5 181 407 74 292 4.95e-21 93.6
MsG0180000001.01.T01 AT5G55950 28.947 228 152 5 181 407 92 310 6.99e-21 93.6
MsG0180000001.01.T01 AT5G55950 30.412 194 131 2 181 374 152 341 1.36e-20 93.6
MsG0180000001.01.T01 AT5G57100 31.795 195 127 4 181 374 44 233 2.14e-18 85.1
MsG0180000001.01.T01 AT5G57100 31.795 195 127 4 181 374 159 348 2.87e-18 86.7
MsG0180000001.01.T01 AT1G77610 23.923 209 151 3 193 396 117 322 8.95e-13 69.3
MsG0180000001.01.T01 AT1G21870 23.423 222 159 6 193 408 123 339 2.97e-11 64.7

Find 141 sgRNAs with CRISPR-Local

Find 219 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCTTTGTGGGAGCTTATT+TGG 0.141842 1:+147679 MsG0180000001.01.T01:CDS
GCTCTCTCTCTTATTATTCT+TGG 0.167279 1:+149185 MsG0180000001.01.T01:CDS
CTTCTCAGCAGTTTCCTTCC+AGG 0.234608 1:+149459 MsG0180000001.01.T01:CDS
AGAACGAGAGAATAAATAAA+AGG 0.283153 1:-147139 None:intergenic
TCGGTCATGGTTGTGGTTAT+TGG 0.305025 1:+148329 MsG0180000001.01.T01:CDS
ATTGTATTCAATTGCGATTA+CGG 0.315031 1:+147253 MsG0180000001.01.T01:five_prime_UTR
AATGGTTATGCTTTCACTTT+CGG 0.319160 1:+147450 MsG0180000001.01.T01:CDS
AAAATTAAAATTGTTGGATA+AGG 0.330145 1:+149779 MsG0180000001.01.T01:three_prime_UTR
ACATTATGTGTTCTGACTTT+GGG 0.331186 1:+149499 MsG0180000001.01.T01:CDS
ACCAACTTTAAGATGTCTTC+TGG 0.333926 1:+149245 MsG0180000001.01.T01:CDS
TGATGAGTTTGTTATTTGTT+TGG 0.345437 1:+149968 MsG0180000001.01.T01:three_prime_UTR
CATCCCGGTGATAGATATAT+TGG 0.352609 1:-147715 None:intergenic
AACGCAACTTGAATCAATTA+TGG 0.358686 1:+147323 MsG0180000001.01.T01:exon
TTGGCTTGTCCGTGATTAAT+TGG 0.359542 1:+149987 MsG0180000001.01.T01:three_prime_UTR
TTCTAAGCATGTTCCTTTGT+GGG 0.362172 1:+147668 MsG0180000001.01.T01:CDS
CTTCTAAGCATGTTCCTTTG+TGG 0.365168 1:+147667 MsG0180000001.01.T01:CDS
TAATGAGTTGGACCGAAATA+TGG 0.365651 1:+147955 MsG0180000001.01.T01:CDS
CTTTCGATCGGAAAGGGAAA+AGG 0.366317 1:-147194 None:intergenic
TATCATAGACCACCATATTT+CGG 0.368292 1:-147967 None:intergenic
GCCTAACAGAAGAAGAAATT+AGG 0.371713 1:+149662 MsG0180000001.01.T01:CDS
CCATCGCATCGCTGGCTGGC+TGG 0.376723 1:-146921 None:intergenic
GCCTAATTTCTTCTTCTGTT+AGG 0.377365 1:-149663 None:intergenic
CGGCATGGTAATTTATAGTT+GGG 0.383718 1:+149585 MsG0180000001.01.T01:CDS
CGATTTCTTTCGATCGGAAA+GGG 0.392587 1:-147200 None:intergenic
CTGGCTGGCAGTGGCACACA+AGG 0.396310 1:-146906 None:intergenic
TGGTCTATGATAGAATATTA+TGG 0.397252 1:+147978 MsG0180000001.01.T01:CDS
ATCAAAACTAAGCATGATTC+CGG 0.401274 1:+148247 MsG0180000001.01.T01:CDS
TGAGGGAGAGTCTTCGCATT+TGG 0.407601 1:-149628 None:intergenic
AACATTATGTGTTCTGACTT+TGG 0.411202 1:+149498 MsG0180000001.01.T01:CDS
GAAAGATATTGAACTTGGTC+AGG 0.413799 1:+149717 MsG0180000001.01.T01:CDS
TTACCAGCGACTACTTTGAC+TGG 0.414974 1:+147585 MsG0180000001.01.T01:intron
TCGGCATGGTAATTTATAGT+TGG 0.416121 1:+149584 MsG0180000001.01.T01:CDS
ATGGTTGTGGTTATTGGTGT+TGG 0.416143 1:+148335 MsG0180000001.01.T01:CDS
ACCACCATCGCATCGCTGGC+TGG 0.417955 1:-146925 None:intergenic
TTGGATAAGGATTAGTATCA+AGG 0.418904 1:+149792 MsG0180000001.01.T01:three_prime_UTR
CCGTTGAAAGATATTGAACT+TGG 0.422605 1:+149712 MsG0180000001.01.T01:CDS
ATTGGTAGATGAACAATATG+AGG 0.437032 1:+150005 MsG0180000001.01.T01:three_prime_UTR
AGTGAAAGCATAACCATTGT+TGG 0.439900 1:-147445 None:intergenic
ATCGCAATTGAATACAATTA+CGG 0.440354 1:-147248 None:intergenic
CACAGCAAGTAAACTAGAAA+AGG 0.447672 1:-149845 None:intergenic
GGAAAGAAAGTAAGTGAGGA+GGG 0.449523 1:-147118 None:intergenic
AGATGAAAAGCAAGCATACT+TGG 0.454051 1:-147773 None:intergenic
TTTGCTGTAACTGCTCTTGT+CGG 0.454803 1:+147615 MsG0180000001.01.T01:CDS
GATTAGTATCAAGGTTATTG+TGG 0.456157 1:+149801 MsG0180000001.01.T01:three_prime_UTR
TTGAGTAGTGTTTGCTGTGA+AGG 0.456859 1:-148292 None:intergenic
AGATTTAGAGATTAATGAGT+TGG 0.458320 1:+147943 MsG0180000001.01.T01:CDS
ATGCTTAGAAGCAGAATAAC+CGG 0.461497 1:-147655 None:intergenic
ATAAGAGAGAGAGCTTGAAT+AGG 0.463485 1:-149176 None:intergenic
AGCGCCCAATGCAGAGGTAC+TGG 0.464687 1:-149438 None:intergenic
GATGTAAATGTTAACTTCAA+AGG 0.465558 1:+148374 MsG0180000001.01.T01:CDS
CATCGCTGGCTGGCTGGCAG+TGG 0.468862 1:-146915 None:intergenic
GAGTTCCGTTGGAATTATCA+TGG 0.475175 1:+147404 MsG0180000001.01.T01:CDS
GGAATGGTTCTTGCAGTTGT+CGG 0.475720 1:+149565 MsG0180000001.01.T01:CDS
CCATTGTTGTGATAGTCAAT+CGG 0.479781 1:+149098 MsG0180000001.01.T01:intron
GCCAGCCAGCGATGCGATGG+TGG 0.483163 1:+146924 MsG0180000001.01.T01:five_prime_UTR
GAAATTAGGCTATTGAAGGA+AGG 0.484963 1:+149676 MsG0180000001.01.T01:CDS
AGCCTCATGCTCAATTCCGT+TGG 0.485954 1:+147744 MsG0180000001.01.T01:CDS
CTGAGATAGTAATCAACAAA+TGG 0.487131 1:-149209 None:intergenic
TTTCGATCGGAAAGGGAAAA+GGG 0.490069 1:-147193 None:intergenic
AGAAGAAATTAGGCTATTGA+AGG 0.492635 1:+149672 MsG0180000001.01.T01:CDS
AAAGAAATCGACCTCAGATC+TGG 0.492639 1:+147213 MsG0180000001.01.T01:five_prime_UTR
TAAGCCAGTACCTCTGCATT+GGG 0.493548 1:+149434 MsG0180000001.01.T01:CDS
CGGTGGTTTGTGTGATGGAA+TGG 0.496976 1:+148267 MsG0180000001.01.T01:CDS
TCACACCACCATCGCATCGC+TGG 0.497315 1:-146929 None:intergenic
ACCAGAAGACATCTTAAAGT+TGG 0.497523 1:-149246 None:intergenic
CCAGCCAGCCAGCGATGCGA+TGG 0.497702 1:+146921 MsG0180000001.01.T01:five_prime_UTR
ATGTAAAATGTGTAAGCTGA+TGG 0.509910 1:+150042 MsG0180000001.01.T01:three_prime_UTR
AAAAGGAAAGAAAGTAAGTG+AGG 0.515205 1:-147122 None:intergenic
CACATTGAATTGATTTAGAG+AGG 0.518364 1:+146999 MsG0180000001.01.T01:five_prime_UTR
ATGAACGTTGTGAGTTCCGT+TGG 0.518477 1:+147393 MsG0180000001.01.T01:CDS
GTAAGCCAGTACCTCTGCAT+TGG 0.520697 1:+149433 MsG0180000001.01.T01:CDS
CTACAAAAGAAATATTCGAT+TGG 0.521950 1:+149125 MsG0180000001.01.T01:CDS
AATATCGAACTTTGGAGCAT+GGG 0.527661 1:+147368 MsG0180000001.01.T01:CDS
ACTACAGCCAGTGGAAAACC+TGG 0.532560 1:+147893 MsG0180000001.01.T01:CDS
GATTCCGGTGGTTTGTGTGA+TGG 0.533242 1:+148262 MsG0180000001.01.T01:CDS
GGCTGGCAGTGGCACACAAG+GGG 0.534421 1:-146904 None:intergenic
CCGATTTAAAACTGAACTGA+TGG 0.536082 1:-147077 None:intergenic
TGATGATACAACTGCTACAC+AGG 0.539546 1:-148408 None:intergenic
TTCACAGCAAACACTACTCA+AGG 0.539879 1:+148294 MsG0180000001.01.T01:CDS
ACAATATGAGGGCACTATTG+TGG 0.542316 1:+150017 MsG0180000001.01.T01:three_prime_UTR
TGAGGTCGATTTCTTTCGAT+CGG 0.544007 1:-147206 None:intergenic
TTTACTTGCTGTGAAACTCT+CGG 0.545380 1:+149855 MsG0180000001.01.T01:three_prime_UTR
CAATATCGAACTTTGGAGCA+TGG 0.548091 1:+147367 MsG0180000001.01.T01:CDS
GACCTCAGATCTGGTGGTGG+TGG 0.548495 1:+147222 MsG0180000001.01.T01:five_prime_UTR
TTTCAAGAACATCATGGGAA+TGG 0.549087 1:+149549 MsG0180000001.01.T01:CDS
ACTAACCGGAGTCGGCTACA+TGG 0.550088 1:-148012 None:intergenic
TTGATCCATGTAGCCGACTC+CGG 0.550204 1:+148007 MsG0180000001.01.T01:CDS
GTTGCCAATATATCTATCAC+CGG 0.550759 1:+147711 MsG0180000001.01.T01:CDS
TCGTCAGCAATATCGAACTT+TGG 0.553664 1:+147360 MsG0180000001.01.T01:CDS
TACCAGCGACTACTTTGACT+GGG 0.553992 1:+147586 MsG0180000001.01.T01:intron
AATTAGGCTATTGAAGGAAG+GGG 0.554252 1:+149678 MsG0180000001.01.T01:CDS
GGTTCTTGCAGTTGTCGGCA+TGG 0.555441 1:+149570 MsG0180000001.01.T01:CDS
GGTAATTTATAGTTGGGCTG+TGG 0.556380 1:+149591 MsG0180000001.01.T01:CDS
TCGATTTCTTTCGATCGGAA+AGG 0.556479 1:-147201 None:intergenic
GTTTCTCTTATAGATTTCCC+AGG 0.556732 1:-147911 None:intergenic
GAAAGTGTCGGTCATGGTTG+TGG 0.566114 1:+148322 MsG0180000001.01.T01:CDS
CCAAGTTCAATATCTTTCAA+CGG 0.566323 1:-149712 None:intergenic
GCTCACTTTCAAGAACATCA+TGG 0.566672 1:+149543 MsG0180000001.01.T01:CDS
CTCACTTTCAAGAACATCAT+GGG 0.569962 1:+149544 MsG0180000001.01.T01:CDS
AGGAAAGAAAGTAAGTGAGG+AGG 0.570153 1:-147119 None:intergenic
AAATTAGGCTATTGAAGGAA+GGG 0.573519 1:+149677 MsG0180000001.01.T01:CDS
TACATTACAAAACACAGCTA+AGG 0.580553 1:-149413 None:intergenic
AAGAAAGTAAGTGAGGAGGG+AGG 0.582082 1:-147115 None:intergenic
CGACGACATAAGTGATTGTG+AGG 0.588624 1:+147035 MsG0180000001.01.T01:five_prime_UTR
ATCTATTAACAAACAAACAA+AGG 0.588663 1:-147279 None:intergenic
GGAAGTGAAAGTGTCGGTCA+TGG 0.589747 1:+148316 MsG0180000001.01.T01:CDS
CTTAACCCACTAACCGGAGT+CGG 0.591378 1:-148020 None:intergenic
TGGCTGGCAGTGGCACACAA+GGG 0.592003 1:-146905 None:intergenic
ATTAGCCATGATAATTCCAA+CGG 0.593168 1:-147409 None:intergenic
TATGTGTTCTGACTTTGGGG+TGG 0.604352 1:+149503 MsG0180000001.01.T01:CDS
GACATAAGTGATTGTGAGGG+AGG 0.604621 1:+147039 MsG0180000001.01.T01:five_prime_UTR
CTGAGAAGCGCCCAATGCAG+AGG 0.605531 1:-149444 None:intergenic
ATTGAATTGATTTAGAGAGG+TGG 0.608450 1:+147002 MsG0180000001.01.T01:five_prime_UTR
CATTATGTGTTCTGACTTTG+GGG 0.611362 1:+149500 MsG0180000001.01.T01:CDS
GTTCATCTACCAATTAATCA+CGG 0.612869 1:-149996 None:intergenic
CATGTGGCCTAAAACCTGGA+AGG 0.613117 1:-149473 None:intergenic
GATTCTCACTCACACACAGA+TGG 0.613336 1:+149754 MsG0180000001.01.T01:three_prime_UTR
ATCGACCTCAGATCTGGTGG+TGG 0.615281 1:+147219 MsG0180000001.01.T01:five_prime_UTR
GAAAAGGAAATAATAAGAGT+CGG 0.627318 1:-146834 None:intergenic
GGACTCGTCTCAAATGCTAC+CGG 0.630645 1:+147636 MsG0180000001.01.T01:CDS
CATGAGGCTTAAGTTCATCC+CGG 0.630737 1:-147730 None:intergenic
CATTCCATCACACAAACCAC+CGG 0.631892 1:-148266 None:intergenic
TTGGTAGATGAACAATATGA+GGG 0.632448 1:+150006 MsG0180000001.01.T01:three_prime_UTR
AAAACTAAGCATGATTCCGG+TGG 0.633913 1:+148250 MsG0180000001.01.T01:CDS
TTTGTTGATTACTATCTCAG+TGG 0.635140 1:+149212 MsG0180000001.01.T01:CDS
GAAATCGACCTCAGATCTGG+TGG 0.637418 1:+147216 MsG0180000001.01.T01:five_prime_UTR
TACCACCACCACCAGATCTG+AGG 0.640382 1:-147224 None:intergenic
AGTCAGATCACTACAGCCAG+TGG 0.646693 1:+147884 MsG0180000001.01.T01:intron
AAACAGCTTATGTCCAACAA+TGG 0.647240 1:+147432 MsG0180000001.01.T01:CDS
AAGTTGCGTTGCGTTGCGTG+TGG 0.650606 1:-147310 None:intergenic
TTGCCAATATATCTATCACC+GGG 0.654090 1:+147712 MsG0180000001.01.T01:CDS
GCATACTTGGTAGAATCCAA+CGG 0.658976 1:-147760 None:intergenic
TCACAGCAAACACTACTCAA+GGG 0.660525 1:+148295 MsG0180000001.01.T01:CDS
ATCCAACGGAATTGAGCATG+AGG 0.660676 1:-147746 None:intergenic
TGAGTTGGACCGAAATATGG+TGG 0.662838 1:+147958 MsG0180000001.01.T01:CDS
ATATCGAACTTTGGAGCATG+GGG 0.667111 1:+147369 MsG0180000001.01.T01:CDS
CTACAGCCAGTGGAAAACCT+GGG 0.677719 1:+147894 MsG0180000001.01.T01:CDS
CTCAAGGGAAGTGAAAGTGT+CGG 0.679931 1:+148310 MsG0180000001.01.T01:CDS
GACGACATAAGTGATTGTGA+GGG 0.689489 1:+147036 MsG0180000001.01.T01:five_prime_UTR
AACCAAATAAGCTCCCACAA+AGG 0.703411 1:-147681 None:intergenic
ATGGTGGTGTGAGACAACAT+TGG 0.722291 1:+146940 MsG0180000001.01.T01:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTAAAATTGTTGGATA+AGG + Chr1:149779-149798 MsG0180000001.01.T01:three_prime_UTR 15.0%
!! ATAATAGAAAAAGAAACATT+TGG + Chr1:148558-148577 MsG0180000001.01.T01:intron 15.0%
!!! AAAAAAAGAAGTTTGATTTA+AGG - Chr1:148999-149018 None:intergenic 15.0%
!!! AATAAATCTATTGATTTGTT+GGG - Chr1:148591-148610 None:intergenic 15.0%
!!! AATATTCTTTTATTTTACTG+AGG - Chr1:146971-146990 None:intergenic 15.0%
!!! GAAAATGAAAATTTTAAAAC+TGG - Chr1:148206-148225 None:intergenic 15.0%
!!! TAAAGAAACATTTTCTAAAA+TGG - Chr1:149908-149927 None:intergenic 15.0%
!!! TAATAAATCTATTGATTTGT+TGG - Chr1:148592-148611 None:intergenic 15.0%
!! AAAAAGAAACATTTGGTTAT+GGG + Chr1:148565-148584 MsG0180000001.01.T01:intron 20.0%
!! AAAGGACATCTTAATATAAA+TGG - Chr1:148504-148523 None:intergenic 20.0%
!! AACACTTGAATATAAATAAC+AGG - Chr1:148530-148549 None:intergenic 20.0%
!! AATATAAATAACAGGAGAAA+AGG - Chr1:148522-148541 None:intergenic 20.0%
!! AATGAAATGTGAAAAATGAA+TGG - Chr1:147520-147539 None:intergenic 20.0%
!! ACTATATATGCATATATTGT+TGG + Chr1:149334-149353 MsG0180000001.01.T01:intron 20.0%
!! ATCTATTAACAAACAAACAA+AGG - Chr1:147282-147301 None:intergenic 20.0%
!! ATGAAATGTGAAAAATGAAT+GGG - Chr1:147519-147538 None:intergenic 20.0%
!! ATGGCAAAAATTAAAATTGT+TGG + Chr1:149773-149792 MsG0180000001.01.T01:three_prime_UTR 20.0%
!!! AATGAAAATTTTAAAACTGG+AGG - Chr1:148203-148222 None:intergenic 20.0%
!!! CATCATTTTTATTCTTTTGA+AGG + Chr1:148712-148731 MsG0180000001.01.T01:intron 20.0%
! AAAAAAAATCAGGTATAGCA+AGG - Chr1:149077-149096 None:intergenic 25.0%
! AAAAAAATCAGGTATAGCAA+GGG - Chr1:149076-149095 None:intergenic 25.0%
! AATTTAGAAATCAAACTGGT+TGG - Chr1:148964-148983 None:intergenic 25.0%
! AGAACGAGAGAATAAATAAA+AGG - Chr1:147142-147161 None:intergenic 25.0%
! AGATTTAGAGATTAATGAGT+TGG + Chr1:147943-147962 MsG0180000001.01.T01:CDS 25.0%
! ATCGCAATTGAATACAATTA+CGG - Chr1:147251-147270 None:intergenic 25.0%
! ATGATTCTAAACCAGTAAAT+TGG + Chr1:148812-148831 MsG0180000001.01.T01:intron 25.0%
! ATTGTATTCAATTGCGATTA+CGG + Chr1:147253-147272 MsG0180000001.01.T01:five_prime_UTR 25.0%
! CTACAAAAGAAATATTCGAT+TGG + Chr1:149125-149144 MsG0180000001.01.T01:CDS 25.0%
! GAAAAAGAAACATTTGGTTA+TGG + Chr1:148564-148583 MsG0180000001.01.T01:intron 25.0%
! GAAAAGGAAATAATAAGAGT+CGG - Chr1:146837-146856 None:intergenic 25.0%
! GATGTAAATGTTAACTTCAA+AGG + Chr1:148374-148393 MsG0180000001.01.T01:CDS 25.0%
! TCTAGATTCAACACAAAAAA+AGG - Chr1:149289-149308 None:intergenic 25.0%
! TGGTAATTTAGAAATCAAAC+TGG - Chr1:148968-148987 None:intergenic 25.0%
! TGGTCTATGATAGAATATTA+TGG + Chr1:147978-147997 MsG0180000001.01.T01:CDS 25.0%
!! GACTCTTATTATTTCCTTTT+CGG + Chr1:146836-146855 MsG0180000001.01.T01:five_prime_UTR 25.0%
!! TTCAGCATCTTTTATTATCT+TGG + Chr1:148909-148928 MsG0180000001.01.T01:intron 25.0%
!! TTTGATTTAAGGAAGAAACT+TGG - Chr1:148988-149007 None:intergenic 25.0%
!!! ATTCTTTTATTTTACTGAGG+AGG - Chr1:146968-146987 None:intergenic 25.0%
!!! TGATGAGTTTGTTATTTGTT+TGG + Chr1:149968-149987 MsG0180000001.01.T01:three_prime_UTR 25.0%
AAAAAGGTGATCACTTACAA+TGG - Chr1:149273-149292 None:intergenic 30.0%
AAAAGGAAAGAAAGTAAGTG+AGG - Chr1:147125-147144 None:intergenic 30.0%
AAACAGACTTCATTGTTAAC+AGG + Chr1:148777-148796 MsG0180000001.01.T01:intron 30.0%
AAACTTCCTGTGTTATATAC+CGG + Chr1:149025-149044 MsG0180000001.01.T01:intron 30.0%
AAATTAGGCTATTGAAGGAA+GGG + Chr1:149677-149696 MsG0180000001.01.T01:CDS 30.0%
AACAGACTTCATTGTTAACA+GGG + Chr1:148778-148797 MsG0180000001.01.T01:intron 30.0%
AACATTATGTGTTCTGACTT+TGG + Chr1:149498-149517 MsG0180000001.01.T01:CDS 30.0%
AACGCAACTTGAATCAATTA+TGG + Chr1:147323-147342 MsG0180000001.01.T01:exon 30.0%
AATGGTTATGCTTTCACTTT+CGG + Chr1:147450-147469 MsG0180000001.01.T01:CDS 30.0%
ACATTATGTGTTCTGACTTT+GGG + Chr1:149499-149518 MsG0180000001.01.T01:CDS 30.0%
AGAAGAAATTAGGCTATTGA+AGG + Chr1:149672-149691 MsG0180000001.01.T01:CDS 30.0%
ATCAAAACTAAGCATGATTC+CGG + Chr1:148247-148266 MsG0180000001.01.T01:CDS 30.0%
ATGTAAAATGTGTAAGCTGA+TGG + Chr1:150042-150061 MsG0180000001.01.T01:three_prime_UTR 30.0%
ATTAGCCATGATAATTCCAA+CGG - Chr1:147412-147431 None:intergenic 30.0%
ATTGGTAGATGAACAATATG+AGG + Chr1:150005-150024 MsG0180000001.01.T01:three_prime_UTR 30.0%
CAACAATGGGAAAAAAAATC+AGG - Chr1:149087-149106 None:intergenic 30.0%
CAATTACTTGACCAATTTAC+TGG - Chr1:148826-148845 None:intergenic 30.0%
CAGTAAATTGGTCAAGTAAT+TGG + Chr1:148824-148843 MsG0180000001.01.T01:intron 30.0%
CCAAGTTCAATATCTTTCAA+CGG - Chr1:149715-149734 None:intergenic 30.0%
CTGAGATAGTAATCAACAAA+TGG - Chr1:149212-149231 None:intergenic 30.0%
GATTAGTATCAAGGTTATTG+TGG + Chr1:149801-149820 MsG0180000001.01.T01:three_prime_UTR 30.0%
GTTCATCTACCAATTAATCA+CGG - Chr1:149999-150018 None:intergenic 30.0%
TACATTACAAAACACAGCTA+AGG - Chr1:149416-149435 None:intergenic 30.0%
TATCATAGACCACCATATTT+CGG - Chr1:147970-147989 None:intergenic 30.0%
TCATTACTACAGAATCTACA+GGG - Chr1:147844-147863 None:intergenic 30.0%
TCTTTACAGCAAATTGTAAG+TGG + Chr1:148431-148450 MsG0180000001.01.T01:intron 30.0%
TTGGTAGATGAACAATATGA+GGG + Chr1:150006-150025 MsG0180000001.01.T01:three_prime_UTR 30.0%
! AGTGTCTTTTAAATTTCTGC+AGG + Chr1:149369-149388 MsG0180000001.01.T01:intron 30.0%
! ATTGAATTGATTTAGAGAGG+TGG + Chr1:147002-147021 MsG0180000001.01.T01:five_prime_UTR 30.0%
! CACATTGAATTGATTTAGAG+AGG + Chr1:146999-147018 MsG0180000001.01.T01:five_prime_UTR 30.0%
! GAACACATAATGTTTTCATG+TGG - Chr1:149492-149511 None:intergenic 30.0%
! GATCTAAAATGAACATTGAC+TGG - Chr1:148757-148776 None:intergenic 30.0%
! TTGGATAAGGATTAGTATCA+AGG + Chr1:149792-149811 MsG0180000001.01.T01:three_prime_UTR 30.0%
! TTTGTTGATTACTATCTCAG+TGG + Chr1:149212-149231 MsG0180000001.01.T01:CDS 30.0%
!!! CCATCAGTTCAGTTTTAAAT+CGG + Chr1:147077-147096 MsG0180000001.01.T01:five_prime_UTR 30.0%
AAACAGCTTATGTCCAACAA+TGG + Chr1:147432-147451 MsG0180000001.01.T01:CDS 35.0%
AATTAGGCTATTGAAGGAAG+GGG + Chr1:149678-149697 MsG0180000001.01.T01:CDS 35.0%
ACAGACTTCATTGTTAACAG+GGG + Chr1:148779-148798 MsG0180000001.01.T01:intron 35.0%
ACCAGAAGACATCTTAAAGT+TGG - Chr1:149249-149268 None:intergenic 35.0%
AGATGAAAAGCAAGCATACT+TGG - Chr1:147776-147795 None:intergenic 35.0%
ATAAGAGAGAGAGCTTGAAT+AGG - Chr1:149179-149198 None:intergenic 35.0%
ATGCTTAGAAGCAGAATAAC+CGG - Chr1:147658-147677 None:intergenic 35.0%
CACAGCAAGTAAACTAGAAA+AGG - Chr1:149848-149867 None:intergenic 35.0%
CATTATGTGTTCTGACTTTG+GGG + Chr1:149500-149519 MsG0180000001.01.T01:CDS 35.0%
CCAACAAATAGCATGATTTC+CGG - Chr1:149047-149066 None:intergenic 35.0%
CCATTGTTGTGATAGTCAAT+CGG + Chr1:149098-149117 MsG0180000001.01.T01:intron 35.0%
CCGTTGAAAGATATTGAACT+TGG + Chr1:149712-149731 MsG0180000001.01.T01:CDS 35.0%
CGATTGACTATCACAACAAT+GGG - Chr1:149100-149119 None:intergenic 35.0%
CGGCATGGTAATTTATAGTT+GGG + Chr1:149585-149604 MsG0180000001.01.T01:CDS 35.0%
CTCACTTTCAAGAACATCAT+GGG + Chr1:149544-149563 MsG0180000001.01.T01:CDS 35.0%
GAAAGATATTGAACTTGGTC+AGG + Chr1:149717-149736 MsG0180000001.01.T01:CDS 35.0%
GAAATTAGGCTATTGAAGGA+AGG + Chr1:149676-149695 MsG0180000001.01.T01:CDS 35.0%
GCCTAACAGAAGAAGAAATT+AGG + Chr1:149662-149681 MsG0180000001.01.T01:CDS 35.0%
GCCTAATTTCTTCTTCTGTT+AGG - Chr1:149666-149685 None:intergenic 35.0%
GCTCTCTCTCTTATTATTCT+TGG + Chr1:149185-149204 MsG0180000001.01.T01:CDS 35.0%
GTCATTACTACAGAATCTAC+AGG - Chr1:147845-147864 None:intergenic 35.0%
GTGAAAAATGAATGGGATCT+GGG - Chr1:147512-147531 None:intergenic 35.0%
GTTGCCAATATATCTATCAC+CGG + Chr1:147711-147730 MsG0180000001.01.T01:CDS 35.0%
GTTTCTCTTATAGATTTCCC+AGG - Chr1:147914-147933 None:intergenic 35.0%
TAAATTCCATATTGCCCACA+TGG - Chr1:148478-148497 None:intergenic 35.0%
TACAGACACATCTTTCATCT+GGG + Chr1:148610-148629 MsG0180000001.01.T01:intron 35.0%
TCGGCATGGTAATTTATAGT+TGG + Chr1:149584-149603 MsG0180000001.01.T01:CDS 35.0%
TGACGAAACAAAAAGGAGTT+TGG + Chr1:146859-146878 MsG0180000001.01.T01:five_prime_UTR 35.0%
TGATTTCCGGTATATAACAC+AGG - Chr1:149034-149053 None:intergenic 35.0%
TGTGAAAAATGAATGGGATC+TGG - Chr1:147513-147532 None:intergenic 35.0%
TTACAGACACATCTTTCATC+TGG + Chr1:148609-148628 MsG0180000001.01.T01:intron 35.0%
TTCTAAGCATGTTCCTTTGT+GGG + Chr1:147668-147687 MsG0180000001.01.T01:CDS 35.0%
TTGAATTGAAGATGAGTGCT+AGG + Chr1:148656-148675 MsG0180000001.01.T01:intron 35.0%
TTGCCAATATATCTATCACC+GGG + Chr1:147712-147731 MsG0180000001.01.T01:CDS 35.0%
TTTCAAGAACATCATGGGAA+TGG + Chr1:149549-149568 MsG0180000001.01.T01:CDS 35.0%
! AGTGAAAGCATAACCATTGT+TGG - Chr1:147448-147467 None:intergenic 35.0%
! CCGATTTAAAACTGAACTGA+TGG - Chr1:147080-147099 None:intergenic 35.0%
! TAATGAGTTGGACCGAAATA+TGG + Chr1:147955-147974 MsG0180000001.01.T01:CDS 35.0%
! TTTTCGGTGACGAAACAAAA+AGG + Chr1:146852-146871 MsG0180000001.01.T01:five_prime_UTR 35.0%
!! AATATCGAACTTTGGAGCAT+GGG + Chr1:147368-147387 MsG0180000001.01.T01:CDS 35.0%
!! ACCAACTTTAAGATGTCTTC+TGG + Chr1:149245-149264 MsG0180000001.01.T01:CDS 35.0%
!! TTTACTTGCTGTGAAACTCT+CGG + Chr1:149855-149874 MsG0180000001.01.T01:three_prime_UTR 35.0%
!! TTTTTGTTTCGTCACCGAAA+AGG - Chr1:146853-146872 None:intergenic 35.0%
!!! TTAGGCTGTTTTTCGAATGA+GGG - Chr1:149648-149667 None:intergenic 35.0%
AAAACTAAGCATGATTCCGG+TGG + Chr1:148250-148269 MsG0180000001.01.T01:CDS 40.0%
AAAGAAATCGACCTCAGATC+TGG + Chr1:147213-147232 MsG0180000001.01.T01:five_prime_UTR 40.0%
AACCAAATAAGCTCCCACAA+AGG - Chr1:147684-147703 None:intergenic 40.0%
AGGAAAGAAAGTAAGTGAGG+AGG - Chr1:147122-147141 None:intergenic 40.0%
ATGGTTGTGGTTATTGGTGT+TGG + Chr1:148335-148354 MsG0180000001.01.T01:CDS 40.0%
CATCCCGGTGATAGATATAT+TGG - Chr1:147718-147737 None:intergenic 40.0%
CCGATTGACTATCACAACAA+TGG - Chr1:149101-149120 None:intergenic 40.0%
CGAAACAAAAAGGAGTTTGG+AGG + Chr1:146862-146881 MsG0180000001.01.T01:five_prime_UTR 40.0%
CGATTTCTTTCGATCGGAAA+GGG - Chr1:147203-147222 None:intergenic 40.0%
CTTCTAAGCATGTTCCTTTG+TGG + Chr1:147667-147686 MsG0180000001.01.T01:CDS 40.0%
GAAAGTGAAAACACGAGAGT+AGG - Chr1:148169-148188 None:intergenic 40.0%
GACGACATAAGTGATTGTGA+GGG + Chr1:147036-147055 MsG0180000001.01.T01:five_prime_UTR 40.0%
GAGTTCCGTTGGAATTATCA+TGG + Chr1:147404-147423 MsG0180000001.01.T01:CDS 40.0%
GCATACTTGGTAGAATCCAA+CGG - Chr1:147763-147782 None:intergenic 40.0%
GCTCACTTTCAAGAACATCA+TGG + Chr1:149543-149562 MsG0180000001.01.T01:CDS 40.0%
GGAAAGAAAGTAAGTGAGGA+GGG - Chr1:147121-147140 None:intergenic 40.0%
GGTAATTTATAGTTGGGCTG+TGG + Chr1:149591-149610 MsG0180000001.01.T01:CDS 40.0%
GGTGCAGATCTAATGTAATG+AGG - Chr1:147491-147510 None:intergenic 40.0%
TCAATCCTTAACCCACTAAC+CGG - Chr1:148029-148048 None:intergenic 40.0%
TCACAGCAAACACTACTCAA+GGG + Chr1:148295-148314 MsG0180000001.01.T01:CDS 40.0%
TCGATTTCTTTCGATCGGAA+AGG - Chr1:147204-147223 None:intergenic 40.0%
TCGTCAGCAATATCGAACTT+TGG + Chr1:147360-147379 MsG0180000001.01.T01:CDS 40.0%
TGATGATACAACTGCTACAC+AGG - Chr1:148411-148430 None:intergenic 40.0%
TTCACAGCAAACACTACTCA+AGG + Chr1:148294-148313 MsG0180000001.01.T01:CDS 40.0%
TTCCTTTGTGGGAGCTTATT+TGG + Chr1:147679-147698 MsG0180000001.01.T01:CDS 40.0%
TTTCGATCGGAAAGGGAAAA+GGG - Chr1:147196-147215 None:intergenic 40.0%
! CCGGAAATCATGCTATTTGT+TGG + Chr1:149044-149063 MsG0180000001.01.T01:intron 40.0%
! TGAGGTCGATTTCTTTCGAT+CGG - Chr1:147209-147228 None:intergenic 40.0%
! TTTGCTGTAACTGCTCTTGT+CGG + Chr1:147615-147634 MsG0180000001.01.T01:CDS 40.0%
! TTTTCATGTGGCCTAAAACC+TGG - Chr1:149480-149499 None:intergenic 40.0%
!! ACAATATGAGGGCACTATTG+TGG + Chr1:150017-150036 MsG0180000001.01.T01:three_prime_UTR 40.0%
!! ATATCGAACTTTGGAGCATG+GGG + Chr1:147369-147388 MsG0180000001.01.T01:CDS 40.0%
!! CAATATCGAACTTTGGAGCA+TGG + Chr1:147367-147386 MsG0180000001.01.T01:CDS 40.0%
!! CTTCCTTTTAGAGACATGTG+CGG + Chr1:148096-148115 MsG0180000001.01.T01:intron 40.0%
!! TTGAGTAGTGTTTGCTGTGA+AGG - Chr1:148295-148314 None:intergenic 40.0%
!! TTGGCTTGTCCGTGATTAAT+TGG + Chr1:149987-150006 MsG0180000001.01.T01:three_prime_UTR 40.0%
!!! GTTAGGCTGTTTTTCGAATG+AGG - Chr1:149649-149668 None:intergenic 40.0%
AAGAAAGTAAGTGAGGAGGG+AGG - Chr1:147118-147137 None:intergenic 45.0%
AATGTGTCTGTTCCACCATG+TGG + Chr1:148460-148479 MsG0180000001.01.T01:intron 45.0%
ATCCAACGGAATTGAGCATG+AGG - Chr1:147749-147768 None:intergenic 45.0%
ATGAACGTTGTGAGTTCCGT+TGG + Chr1:147393-147412 MsG0180000001.01.T01:CDS 45.0%
ATGTGTCTGTTCCACCATGT+GGG + Chr1:148461-148480 MsG0180000001.01.T01:intron 45.0%
ATTCCATATTGCCCACATGG+TGG - Chr1:148475-148494 None:intergenic 45.0%
CATGAGGCTTAAGTTCATCC+CGG - Chr1:147733-147752 None:intergenic 45.0%
CATTCCATCACACAAACCAC+CGG - Chr1:148269-148288 None:intergenic 45.0%
CGACGACATAAGTGATTGTG+AGG + Chr1:147035-147054 MsG0180000001.01.T01:five_prime_UTR 45.0%
CTACCGCACATGTCTCTAAA+AGG - Chr1:148102-148121 None:intergenic 45.0%
CTTTCGATCGGAAAGGGAAA+AGG - Chr1:147197-147216 None:intergenic 45.0%
GACATAAGTGATTGTGAGGG+AGG + Chr1:147039-147058 MsG0180000001.01.T01:five_prime_UTR 45.0%
GATTCTCACTCACACACAGA+TGG + Chr1:149754-149773 MsG0180000001.01.T01:three_prime_UTR 45.0%
GGAATGGTTCTTGCAGTTGT+CGG + Chr1:149565-149584 MsG0180000001.01.T01:CDS 45.0%
TAAGCCAGTACCTCTGCATT+GGG + Chr1:149434-149453 MsG0180000001.01.T01:CDS 45.0%
TACCAGCGACTACTTTGACT+GGG + Chr1:147586-147605 MsG0180000001.01.T01:intron 45.0%
TCGGTCATGGTTGTGGTTAT+TGG + Chr1:148329-148348 MsG0180000001.01.T01:CDS 45.0%
TGTTCATCAGCACTATTCGC+TGG - Chr1:148857-148876 None:intergenic 45.0%
TTACCAGCGACTACTTTGAC+TGG + Chr1:147585-147604 MsG0180000001.01.T01:intron 45.0%
! AGATTTCCCAGGTTTTCCAC+TGG - Chr1:147903-147922 None:intergenic 45.0%
! ATGGTGGTGTGAGACAACAT+TGG + Chr1:146940-146959 MsG0180000001.01.T01:five_prime_UTR 45.0%
! CTCAAGGGAAGTGAAAGTGT+CGG + Chr1:148310-148329 MsG0180000001.01.T01:CDS 45.0%
! GCAGTTTCCTTCCAGGTTTT+AGG + Chr1:149466-149485 MsG0180000001.01.T01:CDS 45.0%
! TATGTGTTCTGACTTTGGGG+TGG + Chr1:149503-149522 MsG0180000001.01.T01:CDS 45.0%
! TGAGTTGGACCGAAATATGG+TGG + Chr1:147958-147977 MsG0180000001.01.T01:CDS 45.0%
AACCCAGTCAAAGTAGTCGC+TGG - Chr1:147591-147610 None:intergenic 50.0%
ACTACAGCCAGTGGAAAACC+TGG + Chr1:147893-147912 MsG0180000001.01.T01:CDS 50.0%
AGCCTCATGCTCAATTCCGT+TGG + Chr1:147744-147763 MsG0180000001.01.T01:CDS 50.0%
AGTCAGATCACTACAGCCAG+TGG + Chr1:147884-147903 MsG0180000001.01.T01:intron 50.0%
CATGTGGCCTAAAACCTGGA+AGG - Chr1:149476-149495 None:intergenic 50.0%
CTACAGCCAGTGGAAAACCT+GGG + Chr1:147894-147913 MsG0180000001.01.T01:CDS 50.0%
CTTAACCCACTAACCGGAGT+CGG - Chr1:148023-148042 None:intergenic 50.0%
CTTCTCAGCAGTTTCCTTCC+AGG + Chr1:149459-149478 MsG0180000001.01.T01:CDS 50.0%
GAAATCGACCTCAGATCTGG+TGG + Chr1:147216-147235 MsG0180000001.01.T01:five_prime_UTR 50.0%
GGACTCGTCTCAAATGCTAC+CGG + Chr1:147636-147655 MsG0180000001.01.T01:CDS 50.0%
GTAAGCCAGTACCTCTGCAT+TGG + Chr1:149433-149452 MsG0180000001.01.T01:CDS 50.0%
GTTCCACCATGTGGGCAATA+TGG + Chr1:148469-148488 MsG0180000001.01.T01:intron 50.0%
TGAGGGAGAGTCTTCGCATT+TGG - Chr1:149631-149650 None:intergenic 50.0%
! CGGTGGTTTGTGTGATGGAA+TGG + Chr1:148267-148286 MsG0180000001.01.T01:CDS 50.0%
! GATTCCGGTGGTTTGTGTGA+TGG + Chr1:148262-148281 MsG0180000001.01.T01:CDS 50.0%
! GTGAGGAGGGAGGAACTTTT+TGG - Chr1:147108-147127 None:intergenic 50.0%
! TTGATCCATGTAGCCGACTC+CGG + Chr1:148007-148026 MsG0180000001.01.T01:CDS 50.0%
!! GAAAGTGTCGGTCATGGTTG+TGG + Chr1:148322-148341 MsG0180000001.01.T01:CDS 50.0%
!! GGAAGTGAAAGTGTCGGTCA+TGG + Chr1:148316-148335 MsG0180000001.01.T01:CDS 50.0%
AAGTTGCGTTGCGTTGCGTG+TGG - Chr1:147313-147332 None:intergenic 55.0%
ACTAACCGGAGTCGGCTACA+TGG - Chr1:148015-148034 None:intergenic 55.0%
ATCGACCTCAGATCTGGTGG+TGG + Chr1:147219-147238 MsG0180000001.01.T01:five_prime_UTR 55.0%
GGTTCTTGCAGTTGTCGGCA+TGG + Chr1:149570-149589 MsG0180000001.01.T01:CDS 55.0%
TACCACCACCACCAGATCTG+AGG - Chr1:147227-147246 None:intergenic 55.0%
! ATGTAGCCGACTCCGGTTAG+TGG + Chr1:148014-148033 MsG0180000001.01.T01:intron 55.0%
! TGTAGCCGACTCCGGTTAGT+GGG + Chr1:148015-148034 MsG0180000001.01.T01:intron 55.0%
!! CGACTCCGGTTAGTGGGTTA+AGG + Chr1:148021-148040 MsG0180000001.01.T01:intron 55.0%
TCACACCACCATCGCATCGC+TGG - Chr1:146932-146951 None:intergenic 60.0%
TGGCTGGCAGTGGCACACAA+GGG - Chr1:146908-146927 None:intergenic 60.0%
! AGCGCCCAATGCAGAGGTAC+TGG - Chr1:149441-149460 None:intergenic 60.0%
!! CTGAGAAGCGCCCAATGCAG+AGG - Chr1:149447-149466 None:intergenic 60.0%
!! GACCTCAGATCTGGTGGTGG+TGG + Chr1:147222-147241 MsG0180000001.01.T01:five_prime_UTR 60.0%
ACCACCATCGCATCGCTGGC+TGG - Chr1:146928-146947 None:intergenic 65.0%
CTGGCTGGCAGTGGCACACA+AGG - Chr1:146909-146928 None:intergenic 65.0%
GGCTGGCAGTGGCACACAAG+GGG - Chr1:146907-146926 None:intergenic 65.0%
CCAGCCAGCCAGCGATGCGA+TGG + Chr1:146921-146940 MsG0180000001.01.T01:five_prime_UTR 70.0%
GCCAGCCAGCGATGCGATGG+TGG + Chr1:146924-146943 MsG0180000001.01.T01:five_prime_UTR 70.0%
! CATCGCTGGCTGGCTGGCAG+TGG - Chr1:146918-146937 None:intergenic 70.0%
! CCATCGCATCGCTGGCTGGC+TGG - Chr1:146924-146943 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr1 gene 146833 150094 146833 ID=MsG0180000001.01;Name=MsG0180000001.01
Chr1 mRNA 146833 150094 146833 ID=MsG0180000001.01.T01;Parent=MsG0180000001.01;Name=MsG0180000001.01.T01;_AED=0.38;_eAED=0.43;_QI=509|0.6|0.5|1|0.6|0.5|6|344|421
Chr1 exon 149391 150094 149391 ID=MsG0180000001.01.T01:exon:8067;Parent=MsG0180000001.01.T01
Chr1 exon 149113 149274 149113 ID=MsG0180000001.01.T01:exon:8066;Parent=MsG0180000001.01.T01
Chr1 exon 148207 148445 148207 ID=MsG0180000001.01.T01:exon:8065;Parent=MsG0180000001.01.T01
Chr1 exon 147890 148028 147890 ID=MsG0180000001.01.T01:exon:8064;Parent=MsG0180000001.01.T01
Chr1 exon 147592 147827 147592 ID=MsG0180000001.01.T01:exon:8063;Parent=MsG0180000001.01.T01
Chr1 exon 146833 147471 146833 ID=MsG0180000001.01.T01:exon:8062;Parent=MsG0180000001.01.T01
Chr1 five_prime_UTR 146833 147341 146833 ID=MsG0180000001.01.T01:five_prime_utr;Parent=MsG0180000001.01.T01
Chr1 CDS 147342 147471 147342 ID=MsG0180000001.01.T01:cds;Parent=MsG0180000001.01.T01
Chr1 CDS 147592 147827 147592 ID=MsG0180000001.01.T01:cds;Parent=MsG0180000001.01.T01
Chr1 CDS 147890 148028 147890 ID=MsG0180000001.01.T01:cds;Parent=MsG0180000001.01.T01
Chr1 CDS 148207 148445 148207 ID=MsG0180000001.01.T01:cds;Parent=MsG0180000001.01.T01
Chr1 CDS 149113 149274 149113 ID=MsG0180000001.01.T01:cds;Parent=MsG0180000001.01.T01
Chr1 CDS 149391 149750 149391 ID=MsG0180000001.01.T01:cds;Parent=MsG0180000001.01.T01
Chr1 three_prime_UTR 149751 150094 149751 ID=MsG0180000001.01.T01:three_prime_utr;Parent=MsG0180000001.01.T01
Gene Sequence

>MsG0180000001.01.T01

ATGGAGAGTGAAAAGAAATCGTCAGCAATATCGAACTTTGGAGCATGGGGTATGAACGTTGTGAGTTCCGTTGGAATTATCATGGCTAATAAACAGCTTATGTCCAACAATGGTTATGCTTTCACTTTCGCGACTACTTTGACTGGGTTTCACTTTGCTGTAACTGCTCTTGTCGGACTCGTCTCAAATGCTACCGGTTATTCTGCTTCTAAGCATGTTCCTTTGTGGGAGCTTATTTGGTTCTCTGCTGTTGCCAATATATCTATCACCGGGATGAACTTAAGCCTCATGCTCAATTCCGTTGGATTCTACCAAGTATGCTTGCTTTTCATCTTTACTCTTTCAACTTCATTCAATTTTCAAGATATCACTACAGCCAGTGGAAAACCTGGGAAATCTATAAGAGAAACTATTAAAAAAGATTTAGAGATTAATGAGTTGGACCGAAATATGGTGGTCTATGATAGAATATTATGGCATAATTTGATCCATGTAGCCGACTCCGTTTTAAAATTTTCATTTTCTCATCGTGTATGTGAACAGATATCAAAACTAAGCATGATTCCGGTGGTTTGTGTGATGGAATGGATCCTTCACAGCAAACACTACTCAAGGGAAGTGAAAGTGTCGGTCATGGTTGTGGTTATTGGTGTTGGTGTTTGCACTGTAACTGATGTAAATGTTAACTTCAAAGGTTTTGTGTGCGCCTGTGTAGCAGTTGTATCATCATCTTTACAGCAAATTTCAATCGGTTCTCTACAAAAGAAATATTCGATTGGATCTTTTGAACTGCTGAGTAAGACTGCTCCTATTCAAGCTCTCTCTCTTATTATTCTTGGTCCATTTGTTGATTACTATCTCAGTGGCAAGTTGATAACCAACTTTAAGATGTCTTCTGGTGCCATTGTTTTCATTCTTCTTTCATGCACCTTAGCTGTGTTTTGTAATGTAAGCCAGTACCTCTGCATTGGGCGCTTCTCAGCAGTTTCCTTCCAGGTTTTAGGCCACATGAAAACATTATGTGTTCTGACTTTGGGGTGGCTGTTATTCGATTCAGAGCTCACTTTCAAGAACATCATGGGAATGGTTCTTGCAGTTGTCGGCATGGTAATTTATAGTTGGGCTGTGGAGCTTGAAAAGCAGCCAAATGCGAAGACTCTCCCTCATTCGAAAAACAGCCTAACAGAAGAAGAAATTAGGCTATTGAAGGAAGGGGTAGAAAATAGTCCGTTGAAAGATATTGAACTTGGTCAGGCTAAAGTTTAG

Protein sequence

>MsG0180000001.01.T01

MESEKKSSAISNFGAWGMNVVSSVGIIMANKQLMSNNGYAFTFATTLTGFHFAVTALVGLVSNATGYSASKHVPLWELIWFSAVANISITGMNLSLMLNSVGFYQVCLLFIFTLSTSFNFQDITTASGKPGKSIRETIKKDLEINELDRNMVVYDRILWHNLIHVADSVLKFSFSHRVCEQISKLSMIPVVCVMEWILHSKHYSREVKVSVMVVVIGVGVCTVTDVNVNFKGFVCACVAVVSSSLQQISIGSLQKKYSIGSFELLSKTAPIQALSLIILGPFVDYYLSGKLITNFKMSSGAIVFILLSCTLAVFCNVSQYLCIGRFSAVSFQVLGHMKTLCVLTLGWLLFDSELTFKNIMGMVLAVVGMVIYSWAVELEKQPNAKTLPHSKNSLTEEEIRLLKEGVENSPLKDIELGQAKV*