AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380011678.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380011678.01.T01 MTR_3g008580 92.742 248 11 1 5 245 344 591 4.82e-157 449
MsG0380011678.01.T01 MTR_4g101650 59.016 244 93 1 5 241 342 585 4.34e-101 306
MsG0380011678.01.T01 MTR_7g051440 54.251 247 101 3 5 240 342 587 1.26e-88 274
MsG0380011678.01.T01 MTR_4g075690 44.762 210 107 3 5 206 325 533 2.10e-55 186
MsG0380011678.01.T01 MTR_5g018270 45.933 209 104 3 5 206 325 531 2.08e-54 183
MsG0380011678.01.T01 MTR_3g115050 44.286 210 108 3 5 206 326 534 2.15e-54 183
MsG0380011678.01.T01 MTR_2g088080 44.286 210 108 3 5 206 245 453 2.22e-54 181
MsG0380011678.01.T01 MTR_1g026410 44.762 210 107 3 5 206 325 533 6.34e-54 182
MsG0380011678.01.T01 MTR_2g088080 44.286 210 108 3 5 206 326 534 1.17e-53 181
MsG0380011678.01.T01 MTR_4g132320 42.381 210 112 3 5 206 327 535 2.64e-53 180
MsG0380011678.01.T01 MTR_4g049390 42.857 210 111 3 5 206 323 531 2.96e-52 177
MsG0380011678.01.T01 MTR_8g479380 42.273 220 113 4 5 213 323 539 1.66e-51 176
MsG0380011678.01.T01 MTR_4g048350 42.381 210 112 3 5 206 322 530 9.74e-51 173
MsG0380011678.01.T01 MTR_8g479390 42.180 211 112 4 5 206 325 534 4.98e-48 166
MsG0380011678.01.T01 MTR_1g090707 38.318 214 122 4 5 209 328 540 6.82e-45 159
MsG0380011678.01.T01 MTR_4g083190 41.315 213 113 5 5 206 327 538 3.28e-44 156
MsG0380011678.01.T01 MTR_4g083210 37.209 215 119 5 5 206 321 532 4.06e-41 148
MsG0380011678.01.T01 MTR_3g083390 38.785 214 117 6 5 206 325 536 7.69e-41 147
MsG0380011678.01.T01 MTR_3g083450 38.785 214 117 6 5 206 326 537 1.39e-40 146
MsG0380011678.01.T01 MTR_3g083430 38.785 214 117 6 5 206 325 536 1.99e-40 146
MsG0380011678.01.T01 MTR_3g083440 38.318 214 118 6 5 206 325 536 2.13e-40 146
MsG0380011678.01.T01 MTR_3g083410 37.788 217 115 5 5 206 289 500 1.14e-39 143
MsG0380011678.01.T01 MTR_3g083400 37.850 214 119 6 5 206 325 536 2.62e-39 143
MsG0380011678.01.T01 MTR_4g075690 40.000 120 70 2 5 123 325 443 5.60e-24 99.8
MsG0380011678.01.T01 MTR_4g133160 34.694 98 57 1 94 191 1 91 5.41e-15 68.9
MsG0380011678.01.T01 MTR_5g018290 50.000 60 30 0 147 206 5 64 1.48e-14 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380011678.01.T01 AT4G25240 61.333 225 80 1 5 222 343 567 6.25e-101 305
MsG0380011678.01.T01 AT4G25240 61.333 225 80 1 5 222 343 567 6.25e-101 305
MsG0380011678.01.T01 AT5G51480 56.627 249 99 3 5 244 342 590 7.24e-100 303
MsG0380011678.01.T01 AT4G12420 60.352 227 83 1 5 224 340 566 5.16e-97 295
MsG0380011678.01.T01 AT4G12420 60.352 227 83 1 5 224 340 566 5.16e-97 295
MsG0380011678.01.T01 AT5G48450 53.386 251 106 4 5 245 334 583 2.35e-88 273
MsG0380011678.01.T01 AT5G48450 54.032 248 102 4 5 240 334 581 1.03e-87 272
MsG0380011678.01.T01 AT4G38420 45.972 211 104 4 5 206 331 540 5.39e-56 187
MsG0380011678.01.T01 AT4G28090 43.128 211 110 4 5 206 326 535 1.66e-52 178
MsG0380011678.01.T01 AT4G22010 45.498 211 105 4 5 206 322 531 2.17e-52 178
MsG0380011678.01.T01 AT5G66920 41.905 210 113 3 5 206 331 539 2.53e-52 178
MsG0380011678.01.T01 AT1G76160 43.810 210 109 3 5 206 323 531 8.70e-52 176
MsG0380011678.01.T01 AT1G21850 44.762 210 107 3 5 206 323 531 7.19e-51 174
MsG0380011678.01.T01 AT1G41830 43.810 210 109 3 5 206 324 532 2.60e-50 172
MsG0380011678.01.T01 AT4G37160 43.333 210 110 3 5 206 327 535 3.71e-48 167
MsG0380011678.01.T01 AT2G23630 40.741 216 119 3 5 212 330 544 5.51e-48 166
MsG0380011678.01.T01 AT2G23630 40.741 216 119 3 5 212 325 539 6.04e-48 166
MsG0380011678.01.T01 AT1G75790 39.269 219 118 4 5 209 328 545 9.70e-48 166
MsG0380011678.01.T01 AT1G55570 39.367 221 121 4 5 213 329 548 9.85e-47 163
MsG0380011678.01.T01 AT1G21860 41.429 210 114 3 5 206 323 531 1.53e-46 162
MsG0380011678.01.T01 AT3G13390 40.187 214 115 4 5 206 328 540 2.79e-46 162
MsG0380011678.01.T01 AT3G13400 39.252 214 116 5 5 206 327 538 3.39e-46 161
MsG0380011678.01.T01 AT3G13400 39.252 214 116 5 5 206 327 538 3.39e-46 161
MsG0380011678.01.T01 AT1G55560 36.916 214 121 5 5 206 326 537 8.44e-45 158
MsG0380011678.01.T01 AT4G38420 44.079 152 75 4 5 147 331 481 2.95e-32 123
MsG0380011678.01.T01 AT4G38420 40.496 121 69 3 5 123 331 450 2.06e-23 98.2
MsG0380011678.01.T01 AT4G37160 39.316 117 69 2 5 120 327 442 3.00e-19 86.7

Find 52 sgRNAs with CRISPR-Local

Find 139 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCATCAACGGTACATATAA+AGG 0.235380 3:+3385241 MsG0380011678.01.T01:CDS
TGTTCTGTTCATCGGCTTGC+TGG 0.257454 3:-3385200 None:intergenic
GAATCTGAGAGCAGAAAATT+TGG 0.265348 3:+3386210 MsG0380011678.01.T01:CDS
TCGGTGTCGCCGGCTTCTTC+AGG 0.271054 3:-3386277 None:intergenic
CTTGGATTTAGGATGGACTA+TGG 0.332483 3:+3385423 MsG0380011678.01.T01:intron
CTCTGTTCAAAACTTTCATC+TGG 0.374331 3:+3385297 MsG0380011678.01.T01:CDS
CGAAAGGACCCTTGAGGGTT+AGG 0.374840 3:-3385007 None:intergenic
TAAAACCTGACGTTCCGTTT+CGG 0.375200 3:+3385131 MsG0380011678.01.T01:CDS
CAAGAAACACTTACAATAAG+TGG 0.417064 3:+3385463 MsG0380011678.01.T01:CDS
CTAACCCTCAAGGGTCCTTT+CGG 0.421813 3:+3385008 MsG0380011678.01.T01:CDS
GTTCAAAACTTTCATCTGGA+TGG 0.433014 3:+3385301 MsG0380011678.01.T01:CDS
ACAACTCGAGCTGCAATTAA+CGG 0.437704 3:+3385097 MsG0380011678.01.T01:CDS
TGGAGCATGGACAGCAATCC+TGG 0.442003 3:+3386162 MsG0380011678.01.T01:CDS
ATCACTGGTGTTCTGTTCAT+CGG 0.467144 3:-3385208 None:intergenic
TCATCAACGGTACATATAAA+GGG 0.471123 3:+3385242 MsG0380011678.01.T01:CDS
AGGATTGCTGTCCATGCTCC+AGG 0.473930 3:-3386160 None:intergenic
GTTCTGTTCATCGGCTTGCT+GGG 0.478544 3:-3385199 None:intergenic
TTCCCATGAGCAATGTGAAA+AGG 0.492544 3:-3386735 None:intergenic
GCAAGCCGAAACGGAACGTC+AGG 0.492678 3:-3385136 None:intergenic
CTCTAGACAATGTTGGATCA+TGG 0.498904 3:+3386188 MsG0380011678.01.T01:CDS
TTTACATCATGATGCTGAGT+AGG 0.513271 3:+3384957 None:intergenic
TTCAAAACTTTCATCTGGAT+GGG 0.517941 3:+3385302 MsG0380011678.01.T01:CDS
GAAGCCGGCGACACCGAGAC+TGG 0.527100 3:+3386283 MsG0380011678.01.T01:CDS
GCTGACAACAATCAGCTAAG+AGG 0.532345 3:+3385157 MsG0380011678.01.T01:CDS
GCAGATTCTACTTTGAGAAG+TGG 0.534225 3:+3386709 MsG0380011678.01.T01:CDS
TGCACCAGTCTCGGTGTCGC+CGG 0.546572 3:-3386287 None:intergenic
TTGTTGTCAGCAAGCCGAAA+CGG 0.546970 3:-3385145 None:intergenic
CGTACCGAAAGGACCCTTGA+GGG 0.550715 3:-3385012 None:intergenic
GTTGTGCCGTTGATCGCCAC+CGG 0.555618 3:-3385079 None:intergenic
ATGATTGATCTATCAATCAC+TGG 0.566439 3:-3385223 None:intergenic
ACAGCACCGGTGGCGATCAA+CGG 0.572276 3:+3385073 MsG0380011678.01.T01:CDS
TGAGAGCAGAAAATTTGGAC+AGG 0.573207 3:+3386215 MsG0380011678.01.T01:CDS
CTTGTTAAAGGTTACAGCAC+CGG 0.575674 3:+3385060 MsG0380011678.01.T01:CDS
CCAGAAAATGTTCTATATTG+CGG 0.576586 3:+3386310 MsG0380011678.01.T01:CDS
AATATCTCGCAGCACAACTC+AGG 0.579985 3:+3385491 MsG0380011678.01.T01:CDS
AAGAAACACTTACAATAAGT+GGG 0.581952 3:+3385464 MsG0380011678.01.T01:CDS
TTAGGATGGACTATGGCGAT+TGG 0.582570 3:+3385430 MsG0380011678.01.T01:intron
ATTGTCAATCCTGAAGAAGC+CGG 0.584686 3:+3386268 MsG0380011678.01.T01:CDS
CTGGTGTCTCTAGACAATGT+TGG 0.597006 3:+3386181 MsG0380011678.01.T01:CDS
GAGCTCGTCCTAACCCTCAA+GGG 0.599281 3:+3384999 MsG0380011678.01.T01:CDS
GAGCAGAAAATTTGGACAGG+TGG 0.600104 3:+3386218 MsG0380011678.01.T01:CDS
AATTTGGACAGGTGGTACCT+AGG 0.611380 3:+3386226 MsG0380011678.01.T01:CDS
TCAGATAAGTTTCTTGACCT+AGG 0.612670 3:-3386243 None:intergenic
GGAGCTCGTCCTAACCCTCA+AGG 0.616297 3:+3384998 MsG0380011678.01.T01:CDS
CCTCAAGGGTCCTTTCGGTA+CGG 0.617590 3:+3385013 MsG0380011678.01.T01:CDS
CTTGATTGAGCCGTACCGAA+AGG 0.621022 3:-3385023 None:intergenic
CAACATTGTCTAGAGACACC+AGG 0.642184 3:-3386180 None:intergenic
AGGCTAAACACATCTGCAAG+TGG 0.642227 3:+3384977 MsG0380011678.01.T01:CDS
ATTGATAGATCAATCATCAA+CGG 0.647112 3:+3385229 MsG0380011678.01.T01:CDS
GTTAAAGGTTACAGCACCGG+TGG 0.660172 3:+3385063 MsG0380011678.01.T01:CDS
TAGGTCAAGAAACTTATCTG+AGG 0.669852 3:+3386245 MsG0380011678.01.T01:CDS
CCGTACCGAAAGGACCCTTG+AGG 0.699100 3:-3385013 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTCTAATGATTTTAATTTA+GGG + Chr3:3385559-3385578 MsG0380011678.01.T01:intron 10.0%
!!! TTTTCTAATGATTTTAATTT+AGG + Chr3:3385558-3385577 MsG0380011678.01.T01:intron 10.0%
!!! GTGCTTTTTAAAATAAATTA+AGG + Chr3:3385678-3385697 MsG0380011678.01.T01:intron 15.0%
!! AAAAATAGACTTGTAACAAA+CGG - Chr3:3386394-3386413 None:intergenic 20.0%
!! AATCATTTGAAAAAAACCTA+AGG - Chr3:3385625-3385644 None:intergenic 20.0%
!! TTATAAATCTTCAATTCCTA+GGG + Chr3:3386092-3386111 MsG0380011678.01.T01:intron 20.0%
!!! ATTTGTAACAATTGATTTCT+TGG + Chr3:3385405-3385424 MsG0380011678.01.T01:intron 20.0%
!!! ATTTTTTCTCGTTAATTAGA+TGG + Chr3:3385706-3385725 MsG0380011678.01.T01:intron 20.0%
!!! TACTGATTTTTACTTGTTAA+AGG + Chr3:3385048-3385067 MsG0380011678.01.T01:CDS 20.0%
! AAAATAGACTTGTAACAAAC+GGG - Chr3:3386393-3386412 None:intergenic 25.0%
! AAGAAACACTTACAATAAGT+GGG + Chr3:3385464-3385483 MsG0380011678.01.T01:CDS 25.0%
! AATACATAAATACCTTTGGA+GGG + Chr3:3386040-3386059 MsG0380011678.01.T01:intron 25.0%
! ACCTAATACATAAATACCTT+TGG + Chr3:3386036-3386055 MsG0380011678.01.T01:intron 25.0%
! AGTGCCATCTAATTAAAAAA+GGG - Chr3:3385974-3385993 None:intergenic 25.0%
! ATGTAAAAGTTACAAGCATT+TGG + Chr3:3386002-3386021 MsG0380011678.01.T01:intron 25.0%
! ATTGATAGATCAATCATCAA+CGG + Chr3:3385229-3385248 MsG0380011678.01.T01:CDS 25.0%
! GTTATAAATCTTCAATTCCT+AGG + Chr3:3386091-3386110 MsG0380011678.01.T01:intron 25.0%
! TAATACATAAATACCTTTGG+AGG + Chr3:3386039-3386058 MsG0380011678.01.T01:intron 25.0%
! TAGTGCCATCTAATTAAAAA+AGG - Chr3:3385975-3385994 None:intergenic 25.0%
! TATAAATCTTCAATTCCTAG+GGG + Chr3:3386093-3386112 MsG0380011678.01.T01:intron 25.0%
!! ACAATTGATTTCTTGGATTT+AGG + Chr3:3385412-3385431 MsG0380011678.01.T01:intron 25.0%
!! GTAAGTGTTTCTTGAATTTT+CGG - Chr3:3385457-3385476 None:intergenic 25.0%
!! GTCTATTTTACCAATATAAC+AGG + Chr3:3386132-3386151 MsG0380011678.01.T01:intron 25.0%
!!! TCCAAAGGTATTTATGTATT+AGG - Chr3:3386040-3386059 None:intergenic 25.0%
ATCATCAACGGTACATATAA+AGG + Chr3:3385241-3385260 MsG0380011678.01.T01:CDS 30.0%
ATGATTGATCTATCAATCAC+TGG - Chr3:3385226-3385245 None:intergenic 30.0%
CAAGAAACACTTACAATAAG+TGG + Chr3:3385463-3385482 MsG0380011678.01.T01:CDS 30.0%
CCAGAAAATGTTCTATATTG+CGG + Chr3:3386310-3386329 MsG0380011678.01.T01:CDS 30.0%
TAGTAAGAAGAGAAAGTGAA+AGG - Chr3:3385361-3385380 None:intergenic 30.0%
TCATCAACGGTACATATAAA+GGG + Chr3:3385242-3385261 MsG0380011678.01.T01:CDS 30.0%
TTCAAAACTTTCATCTGGAT+GGG + Chr3:3385302-3385321 MsG0380011678.01.T01:CDS 30.0%
TTGATTTCTTGGATTTAGGA+TGG + Chr3:3385416-3385435 MsG0380011678.01.T01:intron 30.0%
TTTACTAAGGACATGTTTCA+TGG + Chr3:3385586-3385605 MsG0380011678.01.T01:intron 30.0%
!! ACTTTTGTTTGTATTGGAGA+GGG - Chr3:3386336-3386355 None:intergenic 30.0%
!! TACTTTTGTTTGTATTGGAG+AGG - Chr3:3386337-3386356 None:intergenic 30.0%
!!! GAGGTTACTTTTGTTTGTAT+TGG - Chr3:3386342-3386361 None:intergenic 30.0%
!!! GTTGCCCTTTTTTAATTAGA+TGG + Chr3:3385967-3385986 MsG0380011678.01.T01:intron 30.0%
!!! TGGTTTTAAAAGAGTTCCTT+AGG + Chr3:3385606-3385625 MsG0380011678.01.T01:intron 30.0%
ACTGTCAATGGAAAAATGAG+AGG - Chr3:3386361-3386380 None:intergenic 35.0%
CCAGGAAAAACCTGTTATAT+TGG - Chr3:3386145-3386164 None:intergenic 35.0%
CTAATTAAAAAAGGGCAACC+CGG - Chr3:3385966-3385985 None:intergenic 35.0%
CTCTGTTCAAAACTTTCATC+TGG + Chr3:3385297-3385316 MsG0380011678.01.T01:CDS 35.0%
GAAACATGTCCTTAGTAAAC+AGG - Chr3:3385585-3385604 None:intergenic 35.0%
GAATCTGAGAGCAGAAAATT+TGG + Chr3:3386210-3386229 MsG0380011678.01.T01:CDS 35.0%
GTTCAAAACTTTCATCTGGA+TGG + Chr3:3385301-3385320 MsG0380011678.01.T01:CDS 35.0%
TAATTAGATGGCACTACTGA+GGG + Chr3:3385718-3385737 MsG0380011678.01.T01:intron 35.0%
TAGGTCAAGAAACTTATCTG+AGG + Chr3:3386245-3386264 MsG0380011678.01.T01:CDS 35.0%
TCAGATAAGTTTCTTGACCT+AGG - Chr3:3386246-3386265 None:intergenic 35.0%
TCTTGTGTAAAAACAGGGTA+AGG + Chr3:3385814-3385833 MsG0380011678.01.T01:intron 35.0%
TTAATTAGATGGCACTACTG+AGG + Chr3:3385717-3385736 MsG0380011678.01.T01:intron 35.0%
TTCTTACCCAACAACGAAAA+AGG - Chr3:3385332-3385351 None:intergenic 35.0%
TTGTAAAATACTCCCTCCAA+AGG - Chr3:3386055-3386074 None:intergenic 35.0%
! AAACGAGTATCTCTTTTGAG+TGG + Chr3:3386493-3386512 MsG0380011678.01.T01:intron 35.0%
! AATTTAGGGCCTGTTTACTA+AGG + Chr3:3385573-3385592 MsG0380011678.01.T01:intron 35.0%
! CCAATATAACAGGTTTTTCC+TGG + Chr3:3386142-3386161 MsG0380011678.01.T01:intron 35.0%
! CCGCAATATAGAACATTTTC+TGG - Chr3:3386313-3386332 None:intergenic 35.0%
! TTCCTTTTCACATTGCTCAT+GGG + Chr3:3386733-3386752 MsG0380011678.01.T01:CDS 35.0%
!!! CAGATGAAAGTTTTGAACAG+AGG - Chr3:3385299-3385318 None:intergenic 35.0%
!!! TTACCCTGTTTTTACACAAG+AGG - Chr3:3385815-3385834 None:intergenic 35.0%
AATGATTGATTGAGTCCCCT+AGG - Chr3:3386111-3386130 None:intergenic 40.0%
AATTAGATGGCACTACTGAG+GGG + Chr3:3385719-3385738 MsG0380011678.01.T01:intron 40.0%
ACAACTCGAGCTGCAATTAA+CGG + Chr3:3385097-3385116 MsG0380011678.01.T01:CDS 40.0%
ACTGCCTCTTGTGTAAAAAC+AGG + Chr3:3385808-3385827 MsG0380011678.01.T01:intron 40.0%
ATCACTGGTGTTCTGTTCAT+CGG - Chr3:3385211-3385230 None:intergenic 40.0%
ATTGTCAATCCTGAAGAAGC+CGG + Chr3:3386268-3386287 MsG0380011678.01.T01:CDS 40.0%
CATGTTAGCAAGCTTATGCA+TGG + Chr3:3385649-3385668 MsG0380011678.01.T01:intron 40.0%
CGTACAATACACCAAATGGT+GGG + Chr3:3385840-3385859 MsG0380011678.01.T01:intron 40.0%
CTCTAGACAATGTTGGATCA+TGG + Chr3:3386188-3386207 MsG0380011678.01.T01:CDS 40.0%
CTGCCTCTTGTGTAAAAACA+GGG + Chr3:3385809-3385828 MsG0380011678.01.T01:intron 40.0%
CTTGTTAAAGGTTACAGCAC+CGG + Chr3:3385060-3385079 MsG0380011678.01.T01:CDS 40.0%
GGGTACAAAAACACTGTCAA+TGG - Chr3:3386373-3386392 None:intergenic 40.0%
GTTGTTGTCATGTGACTGTA+AGG + Chr3:3385764-3385783 MsG0380011678.01.T01:intron 40.0%
TAAAACCTGACGTTCCGTTT+CGG + Chr3:3385131-3385150 MsG0380011678.01.T01:CDS 40.0%
TGAGAGCAGAAAATTTGGAC+AGG + Chr3:3386215-3386234 MsG0380011678.01.T01:CDS 40.0%
TTCCCATGAGCAATGTGAAA+AGG - Chr3:3386738-3386757 None:intergenic 40.0%
! CTTCCTTTTCACATTGCTCA+TGG + Chr3:3386732-3386751 MsG0380011678.01.T01:CDS 40.0%
! GCAGATTCTACTTTGAGAAG+TGG + Chr3:3386709-3386728 MsG0380011678.01.T01:CDS 40.0%
!! CTTGGATTTAGGATGGACTA+TGG + Chr3:3385423-3385442 MsG0380011678.01.T01:intron 40.0%
!! GGTACTCCTTTTTCGTTGTT+GGG + Chr3:3385323-3385342 MsG0380011678.01.T01:intron 40.0%
AATATCTCGCAGCACAACTC+AGG + Chr3:3385491-3385510 MsG0380011678.01.T01:CDS 45.0%
AATTTGGACAGGTGGTACCT+AGG + Chr3:3386226-3386245 MsG0380011678.01.T01:CDS 45.0%
AGGCTAAACACATCTGCAAG+TGG + Chr3:3384977-3384996 MsG0380011678.01.T01:CDS 45.0%
CAACATTGTCTAGAGACACC+AGG - Chr3:3386183-3386202 None:intergenic 45.0%
CTGGTGTCTCTAGACAATGT+TGG + Chr3:3386181-3386200 MsG0380011678.01.T01:CDS 45.0%
GAGCAGAAAATTTGGACAGG+TGG + Chr3:3386218-3386237 MsG0380011678.01.T01:CDS 45.0%
GCGTACAATACACCAAATGG+TGG + Chr3:3385839-3385858 MsG0380011678.01.T01:intron 45.0%
GCTGACAACAATCAGCTAAG+AGG + Chr3:3385157-3385176 MsG0380011678.01.T01:CDS 45.0%
GCTGCGTACAATACACCAAA+TGG + Chr3:3385836-3385855 MsG0380011678.01.T01:intron 45.0%
GTCATGTGACTGTAAGGTCA+CGG + Chr3:3385770-3385789 MsG0380011678.01.T01:intron 45.0%
GTTAGCAAGCTTATGCATGG+AGG + Chr3:3385652-3385671 MsG0380011678.01.T01:intron 45.0%
TCATGTGACTGTAAGGTCAC+GGG + Chr3:3385771-3385790 MsG0380011678.01.T01:intron 45.0%
TTACACAAGAGGCAGTTTCC+AGG - Chr3:3385804-3385823 None:intergenic 45.0%
TTGTTGTCAGCAAGCCGAAA+CGG - Chr3:3385148-3385167 None:intergenic 45.0%
! AACAGGTTTTTCCTGGAGCA+TGG + Chr3:3386149-3386168 MsG0380011678.01.T01:intron 45.0%
!! ATTTTCTGGTGCACCAGTCT+CGG - Chr3:3386299-3386318 None:intergenic 45.0%
!! GGGTACTCCTTTTTCGTTGT+TGG + Chr3:3385322-3385341 MsG0380011678.01.T01:intron 45.0%
!! TTAGGATGGACTATGGCGAT+TGG + Chr3:3385430-3385449 MsG0380011678.01.T01:intron 45.0%
CAACTTTACCAGTTGCGCCA+AGG - Chr3:3385748-3385767 None:intergenic 50.0%
CTAACCCTCAAGGGTCCTTT+CGG + Chr3:3385008-3385027 MsG0380011678.01.T01:CDS 50.0%
CTTGATTGAGCCGTACCGAA+AGG - Chr3:3385026-3385045 None:intergenic 50.0%
! GTTAAAGGTTACAGCACCGG+TGG + Chr3:3385063-3385082 MsG0380011678.01.T01:CDS 50.0%
!! GTTCTGTTCATCGGCTTGCT+GGG - Chr3:3385202-3385221 None:intergenic 50.0%
!! TGTTCTGTTCATCGGCTTGC+TGG - Chr3:3385203-3385222 None:intergenic 50.0%
AAGGTCACGGGTTCAAGTCC+TGG + Chr3:3385783-3385802 MsG0380011678.01.T01:intron 55.0%
AGGATTGCTGTCCATGCTCC+AGG - Chr3:3386163-3386182 None:intergenic 55.0%
CCTCAAGGGTCCTTTCGGTA+CGG + Chr3:3385013-3385032 MsG0380011678.01.T01:CDS 55.0%
CGAAAGGACCCTTGAGGGTT+AGG - Chr3:3385010-3385029 None:intergenic 55.0%
CGGGAAGGGGTCCCAAAAAA+GGG - Chr3:3385914-3385933 None:intergenic 55.0%
CGTACCGAAAGGACCCTTGA+GGG - Chr3:3385015-3385034 None:intergenic 55.0%
GAGCTCGTCCTAACCCTCAA+GGG + Chr3:3384999-3385018 MsG0380011678.01.T01:CDS 55.0%
GCACTACTGAGGGGTAACCT+TGG + Chr3:3385728-3385747 MsG0380011678.01.T01:intron 55.0%
GGTCCCAAAAAAGGGCAACC+CGG - Chr3:3385906-3385925 None:intergenic 55.0%
TGGAGCATGGACAGCAATCC+TGG + Chr3:3386162-3386181 MsG0380011678.01.T01:CDS 55.0%
!!! CCTTTTTTGGGACCCCTTCC+CGG + Chr3:3385912-3385931 MsG0380011678.01.T01:intron 55.0%
!!! GCACCGGGTTGCCCTTTTTT+GGG + Chr3:3385900-3385919 MsG0380011678.01.T01:intron 55.0%
!!! TGCACCGGGTTGCCCTTTTT+TGG + Chr3:3385899-3385918 MsG0380011678.01.T01:intron 55.0%
ACTGAAGCTCCCGCATACGC+AGG - Chr3:3385880-3385899 None:intergenic 60.0%
AGGGGTAACCTTGGCGCAAC+TGG + Chr3:3385737-3385756 MsG0380011678.01.T01:intron 60.0%
ATGCGGGAGCTTCAGTGCAC+CGG + Chr3:3385884-3385903 MsG0380011678.01.T01:intron 60.0%
CCGGGAAGGGGTCCCAAAAA+AGG - Chr3:3385915-3385934 None:intergenic 60.0%
CCGTACCGAAAGGACCCTTG+AGG - Chr3:3385016-3385035 None:intergenic 60.0%
CTGAAGCTCCCGCATACGCA+GGG - Chr3:3385879-3385898 None:intergenic 60.0%
GCAAGCCGAAACGGAACGTC+AGG - Chr3:3385139-3385158 None:intergenic 60.0%
GGAGCTCGTCCTAACCCTCA+AGG + Chr3:3384998-3385017 MsG0380011678.01.T01:CDS 60.0%
! CAAATGGTGGGACCCCTTCC+CGG + Chr3:3385852-3385871 MsG0380011678.01.T01:intron 60.0%
! GTTGTGCCGTTGATCGCCAC+CGG - Chr3:3385082-3385101 None:intergenic 60.0%
!! ACAGCACCGGTGGCGATCAA+CGG + Chr3:3385073-3385092 MsG0380011678.01.T01:CDS 60.0%
CATACGCAGGGTCCGGGAAG+GGG - Chr3:3385867-3385886 None:intergenic 65.0%
CGGGAAGGGGTCCCACCATT+TGG - Chr3:3385854-3385873 None:intergenic 65.0%
CTTCCCGGACCCTGCGTATG+CGG + Chr3:3385867-3385886 MsG0380011678.01.T01:intron 65.0%
GCATACGCAGGGTCCGGGAA+GGG - Chr3:3385868-3385887 None:intergenic 65.0%
TGCGGGAGCTTCAGTGCACC+GGG + Chr3:3385885-3385904 MsG0380011678.01.T01:intron 65.0%
TTCCCGGACCCTGCGTATGC+GGG + Chr3:3385868-3385887 MsG0380011678.01.T01:intron 65.0%
!! TCGGTGTCGCCGGCTTCTTC+AGG - Chr3:3386280-3386299 None:intergenic 65.0%
!! TGCACCAGTCTCGGTGTCGC+CGG - Chr3:3386290-3386309 None:intergenic 65.0%
CGCATACGCAGGGTCCGGGA+AGG - Chr3:3385869-3385888 None:intergenic 70.0%
CTCCCGCATACGCAGGGTCC+GGG - Chr3:3385873-3385892 None:intergenic 70.0%
GAAGCCGGCGACACCGAGAC+TGG + Chr3:3386283-3386302 MsG0380011678.01.T01:CDS 70.0%
GCTCCCGCATACGCAGGGTC+CGG - Chr3:3385874-3385893 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr3 gene 3384965 3386783 3384965 ID=MsG0380011678.01;Name=MsG0380011678.01
Chr3 mRNA 3384965 3386783 3384965 ID=MsG0380011678.01.T01;Parent=MsG0380011678.01;Name=MsG0380011678.01.T01;_AED=0.50;_eAED=0.51;_QI=0|0|0|1|1|0.75|4|0|245
Chr3 exon 3384965 3385323 3384965 ID=MsG0380011678.01.T01:exon:1004;Parent=MsG0380011678.01.T01
Chr3 exon 3385434 3385512 3385434 ID=MsG0380011678.01.T01:exon:1005;Parent=MsG0380011678.01.T01
Chr3 exon 3386154 3386353 3386154 ID=MsG0380011678.01.T01:exon:1006;Parent=MsG0380011678.01.T01
Chr3 exon 3386684 3386783 3386684 ID=MsG0380011678.01.T01:exon:1007;Parent=MsG0380011678.01.T01
Chr3 CDS 3384965 3385323 3384965 ID=MsG0380011678.01.T01:cds;Parent=MsG0380011678.01.T01
Chr3 CDS 3385434 3385512 3385434 ID=MsG0380011678.01.T01:cds;Parent=MsG0380011678.01.T01
Chr3 CDS 3386154 3386353 3386154 ID=MsG0380011678.01.T01:cds;Parent=MsG0380011678.01.T01
Chr3 CDS 3386684 3386783 3386684 ID=MsG0380011678.01.T01:cds;Parent=MsG0380011678.01.T01
Gene Sequence

>MsG0380011678.01.T01

ATGATGCTGAGTAGGCTAAACACATCTGCAAGTGGAGCTCGTCCTAACCCTCAAGGGTCCTTTCGGTACGGCTCAATCAAGATTACTGATTTTTACTTGTTAAAGGTTACAGCACCGGTGGCGATCAACGGCACAACTCGAGCTGCAATTAACGGAATCTCATTTCTAAAACCTGACGTTCCGTTTCGGCTTGCTGACAACAATCAGCTAAGAGGAATTTATAAGCTTGATTTTCCCAGCAAGCCGATGAACAGAACACCAGTGATTGATAGATCAATCATCAACGGTACATATAAAGGGTTCATTGAGATTGTGTTGCAAAACAATGACTCCTCTGTTCAAAACTTTCATCTGGATGGGATGGACTATGGCGATTGGTCCGAAAATTCAAGAAACACTTACAATAAGTGGGATGCAATATCTCGCAGCACAACTCAGGTTTTTCCTGGAGCATGGACAGCAATCCTGGTGTCTCTAGACAATGTTGGATCATGGAATCTGAGAGCAGAAAATTTGGACAGGTGGTACCTAGGTCAAGAAACTTATCTGAGGATTGTCAATCCTGAAGAAGCCGGCGACACCGAGACTGGTGCACCAGAAAATGTTCTATATTGCGGCCCTCTCCAATACAAACAAAAAAAGCAGACACATTCTTCATCTTCTGCAGATTCTACTTTGAGAAGTGGCTTCCTTTTCACATTGCTCATGGGAATTCTTGTGATTTTCACATCTAGTTAA
Protein sequence

>MsG0380011678.01.T01

MMLSRLNTSASGARPNPQGSFRYGSIKITDFYLLKVTAPVAINGTTRAAINGISFLKPDVPFRLADNNQLRGIYKLDFPSKPMNRTPVIDRSIINGTYKGFIEIVLQNNDSSVQNFHLDGMDYGDWSENSRNTYNKWDAISRSTTQVFPGAWTAILVSLDNVGSWNLRAENLDRWYLGQETYLRIVNPEEAGDTETGAPENVLYCGPLQYKQKKQTHSSSSADSTLRSGFLFTLLMGILVIFTSS*