AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480023636.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023636.01.T01 MTR_8g098400 97.093 172 5 0 1 172 1 172 1.66e-121 340
MsG0480023636.01.T01 MTR_8g098400 96.914 162 5 0 1 162 1 162 2.21e-113 320
MsG0480023636.01.T01 MTR_8g098400 97.600 125 3 0 48 172 1 125 3.67e-87 251
MsG0480023636.01.T01 MTR_8g098410 68.902 164 51 0 6 169 2 165 7.48e-87 252
MsG0480023636.01.T01 MTR_8g098410 68.902 164 51 0 6 169 68 231 8.08e-87 254
MsG0480023636.01.T01 MTR_5g010340 71.257 167 47 1 5 170 3 169 1.15e-83 245
MsG0480023636.01.T01 MTR_8g105630 67.089 158 52 0 12 169 7 164 1.47e-77 228
MsG0480023636.01.T01 MTR_1g014210 64.375 160 57 0 12 171 77 236 3.28e-75 225
MsG0480023636.01.T01 MTR_7g094600 60.606 165 65 0 6 170 4 168 4.10e-73 217
MsG0480023636.01.T01 MTR_8g098400 94.393 107 6 0 1 107 1 107 1.56e-69 207
MsG0480023636.01.T01 MTR_1g072570 55.625 160 70 1 13 171 11 170 2.15e-64 195
MsG0480023636.01.T01 MTR_7g094600 61.290 124 48 0 47 170 7 130 2.69e-52 163
MsG0480023636.01.T01 MTR_8g098410 68.627 102 32 0 6 107 68 169 5.12e-51 162
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023636.01.T01 AT1G63460 77.439 164 37 0 8 171 3 166 7.54e-96 275
MsG0480023636.01.T01 AT4G11600 73.494 166 44 0 6 171 65 230 1.08e-91 267
MsG0480023636.01.T01 AT4G31870 66.875 160 53 0 12 171 74 233 9.68e-77 229
MsG0480023636.01.T01 AT2G43350 62.722 169 63 0 2 170 36 204 1.34e-74 223
MsG0480023636.01.T01 AT2G43350 62.722 169 63 0 2 170 36 204 1.34e-74 223
MsG0480023636.01.T01 AT2G31570 64.815 162 57 0 9 170 4 165 1.38e-74 221
MsG0480023636.01.T01 AT2G25080 63.125 160 59 0 12 171 77 236 4.59e-73 219
MsG0480023636.01.T01 AT3G63080 59.119 159 65 0 14 172 14 172 1.27e-69 209
MsG0480023636.01.T01 AT2G48150 56.098 164 72 0 6 169 4 167 3.64e-66 200
MsG0480023636.01.T01 AT2G48150 58.156 141 59 0 29 169 1 141 1.25e-58 180
MsG0480023636.01.T01 AT4G31870 65.000 60 21 0 12 71 74 133 4.91e-21 85.1

Find 68 sgRNAs with CRISPR-Local

Find 133 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAATTAGGCCTTGAGATTC+TGG 0.187620 4:+87950227 MsG0480023636.01.T01:intron
GTGAAGTCGTAGACCGATTT+TGG 0.224009 4:-87949541 None:intergenic
AATTCTTAAAGTCAGGTAAA+TGG 0.245816 4:+87950972 MsG0480023636.01.T01:CDS
AACTCCATTACCTCTGTTTC+GGG 0.246672 4:+87949437 MsG0480023636.01.T01:five_prime_UTR
GCATTTCCAAGTAATCAATT+TGG 0.254246 4:+87950249 MsG0480023636.01.T01:CDS
AAACTCCATTACCTCTGTTT+CGG 0.263664 4:+87949436 MsG0480023636.01.T01:five_prime_UTR
AAGCAAACATGTTGTCTATA+AGG 0.304042 4:-87951394 None:intergenic
TCCTCGCCAAATTGATTACT+TGG 0.314943 4:-87950255 None:intergenic
AAAATCCAATATTTGATCAT+TGG 0.340942 4:-87950289 None:intergenic
ATTCTTAAAGTCAGGTAAAT+GGG 0.352395 4:+87950973 MsG0480023636.01.T01:CDS
ACCGTACTCACTTGACTTGA+TGG 0.356237 4:-87949482 None:intergenic
TGGAACCAATGATCAAATAT+TGG 0.356345 4:+87950284 MsG0480023636.01.T01:CDS
TTGAATTACCTTATCAAAGA+TGG 0.358414 4:-87950340 None:intergenic
ATAGTTAGATGTTATATGAT+TGG 0.368618 4:-87951473 None:intergenic
ATAATATTACAACTTCAAAA+AGG 0.409181 4:-87951328 None:intergenic
AATATTTGATCATTGGTTCC+AGG 0.413256 4:-87950282 None:intergenic
CGAGACATCTGTAAACTACT+TGG 0.422116 4:+87951217 MsG0480023636.01.T01:CDS
TTCAATTCTGCAGGATGGTA+AGG 0.423052 4:+87949656 MsG0480023636.01.T01:intron
AGAGTTTGAGTTGAGTTGTT+TGG 0.426311 4:+87949406 MsG0480023636.01.T01:five_prime_UTR
AGAATTCCCCATCTTTGATA+AGG 0.431153 4:+87950332 MsG0480023636.01.T01:CDS
CAATTTGGCGAGGAAGAACC+TGG 0.436830 4:+87950264 MsG0480023636.01.T01:CDS
GAGACCCGAAACAGAGGTAA+TGG 0.451473 4:-87949441 None:intergenic
TTGTTAATGTTGCTTCCAAA+TGG 0.457654 4:+87949724 MsG0480023636.01.T01:CDS
TTGTATAAATTCTTAAAGTC+AGG 0.461142 4:+87950965 MsG0480023636.01.T01:CDS
TGTTGATCTCGCCACTTACA+AGG 0.462862 4:+87949686 MsG0480023636.01.T01:CDS
AGTTGTAATATTATGCATAG+TGG 0.465557 4:+87951337 MsG0480023636.01.T01:three_prime_UTR
TGAATTACCTTATCAAAGAT+GGG 0.470782 4:-87950339 None:intergenic
TAACAGTAAGGATCCAAAAT+CGG 0.474969 4:+87949528 MsG0480023636.01.T01:CDS
TTTGGATCCTTACTGTTACT+GGG 0.498091 4:-87949523 None:intergenic
ATGGATTCAGCTTGGAAAAG+AGG 0.510743 4:+87951258 MsG0480023636.01.T01:three_prime_UTR
TAACTCCACATAATTTGAGT+TGG 0.517130 4:-87950053 None:intergenic
ATCCTTGTCAACTAGAAACT+TGG 0.517555 4:-87951029 None:intergenic
TGTGCTAGATTGAAGTGAAT+GGG 0.521263 4:+87950927 MsG0480023636.01.T01:intron
GAGACATCTGTAAACTACTT+GGG 0.521318 4:+87951218 MsG0480023636.01.T01:CDS
GAGGACTTTACCCTTGTAAG+TGG 0.525139 4:-87949697 None:intergenic
CATGACCAACTCAAATTATG+TGG 0.528169 4:+87950048 MsG0480023636.01.T01:CDS
AAGGCTAAGAGGAGAGGTGG+TGG 0.529913 4:-87951077 None:intergenic
CCATGTACCTCAAGGCTAAG+AGG 0.532425 4:-87951088 None:intergenic
TTGTGCTAGATTGAAGTGAA+TGG 0.540651 4:+87950926 MsG0480023636.01.T01:intron
GGGTTGAATGAATACATACA+TGG 0.546639 4:+87951239 MsG0480023636.01.T01:exon
TCAATTCTGCAGGATGGTAA+GGG 0.547862 4:+87949657 MsG0480023636.01.T01:intron
TCCATCAAGTCAAGTGAGTA+CGG 0.553643 4:+87949481 MsG0480023636.01.T01:five_prime_UTR
TGACTTTAAGAATTTATACA+AGG 0.560826 4:-87950963 None:intergenic
CAGCGAACCCAGTAACAGTA+AGG 0.563779 4:+87949516 MsG0480023636.01.T01:CDS
TGCCAAGTTTCTAGTTGACA+AGG 0.569738 4:+87951027 MsG0480023636.01.T01:CDS
CACCTCTCCTCTTAGCCTTG+AGG 0.570064 4:+87951081 MsG0480023636.01.T01:CDS
AGGCTAAGAGGAGAGGTGGT+GGG 0.578274 4:-87951076 None:intergenic
ATACATACATGGATTCAGCT+TGG 0.592578 4:+87951250 MsG0480023636.01.T01:three_prime_UTR
CTCAAGGCTAAGAGGAGAGG+TGG 0.599220 4:-87951080 None:intergenic
AAGTTTCTAGTTGACAAGGA+TGG 0.601035 4:+87951031 MsG0480023636.01.T01:CDS
TTCTTAAAGTCAGGTAAATG+GGG 0.604283 4:+87950974 MsG0480023636.01.T01:CDS
TTGGAAATGCCAGAATCTCA+AGG 0.604387 4:-87950236 None:intergenic
ATTCAGCTTGGAAAAGAGGA+TGG 0.606734 4:+87951262 MsG0480023636.01.T01:three_prime_UTR
GAATTACCTTATCAAAGATG+GGG 0.609426 4:-87950338 None:intergenic
TGGAAGCAACATTAACAATG+AGG 0.614719 4:-87949719 None:intergenic
GACTTTAAGAATTTATACAA+GGG 0.617926 4:-87950962 None:intergenic
AGACATCTGTAAACTACTTG+GGG 0.623906 4:+87951219 MsG0480023636.01.T01:CDS
TACCTCAAGGCTAAGAGGAG+AGG 0.624418 4:-87951083 None:intergenic
CAAGAAGAGACCCGAAACAG+AGG 0.624780 4:-87949447 None:intergenic
TGACAAGGATGGTCAAGTGG+TGG 0.627347 4:+87951042 MsG0480023636.01.T01:CDS
GTTGATCTCGCCACTTACAA+GGG 0.632755 4:+87949687 MsG0480023636.01.T01:CDS
TCCAAGTAATCAATTTGGCG+AGG 0.638053 4:+87950254 MsG0480023636.01.T01:CDS
GGTCTACGACTTCACTCTCA+AGG 0.640018 4:+87949549 MsG0480023636.01.T01:CDS
AGTTGACAAGGATGGTCAAG+TGG 0.640869 4:+87951039 MsG0480023636.01.T01:CDS
TATGACAAGTACAAACACAA+AGG 0.684030 4:+87950085 MsG0480023636.01.T01:CDS
GTGCTAGATTGAAGTGAATG+GGG 0.691263 4:+87950928 MsG0480023636.01.T01:intron
GTACTCACTTGACTTGATGG+AGG 0.692832 4:-87949479 None:intergenic
AAGCAACATTAACAATGAGG+AGG 0.704587 4:-87949716 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATATTACAACTTCAAAA+AGG - Chr4:87951331-87951350 None:intergenic 15.0%
!! GATAAAGATTATAAGATTAA+GGG + Chr4:87950636-87950655 MsG0480023636.01.T01:intron 15.0%
!! AAAATCCAATATTTGATCAT+TGG - Chr4:87950292-87950311 None:intergenic 20.0%
!! ATAGTTAGATGTTATATGAT+TGG - Chr4:87951476-87951495 None:intergenic 20.0%
!! CTTATACAATATACAAAACA+GGG + Chr4:87949926-87949945 MsG0480023636.01.T01:intron 20.0%
!! GGATAAAGATTATAAGATTA+AGG + Chr4:87950635-87950654 MsG0480023636.01.T01:intron 20.0%
!! TACATATATATCGCAAAATT+TGG - Chr4:87950548-87950567 None:intergenic 20.0%
!! TATATCAATATCAATTGACA+TGG + Chr4:87951145-87951164 MsG0480023636.01.T01:intron 20.0%
!! TTGTATAAATTCTTAAAGTC+AGG + Chr4:87950965-87950984 MsG0480023636.01.T01:CDS 20.0%
!!! GACTTTAAGAATTTATACAA+GGG - Chr4:87950965-87950984 None:intergenic 20.0%
!!! TGACTTTAAGAATTTATACA+AGG - Chr4:87950966-87950985 None:intergenic 20.0%
! AAAGAAAGAAACGCTAATTT+AGG - Chr4:87950139-87950158 None:intergenic 25.0%
! AATTCTTAAAGTCAGGTAAA+TGG + Chr4:87950972-87950991 MsG0480023636.01.T01:CDS 25.0%
! AGTTGTAATATTATGCATAG+TGG + Chr4:87951337-87951356 MsG0480023636.01.T01:three_prime_UTR 25.0%
! ATTCTTAAAGTCAGGTAAAT+GGG + Chr4:87950973-87950992 MsG0480023636.01.T01:CDS 25.0%
! GAAATGAATAAAAGAGAGTA+TGG - Chr4:87949763-87949782 None:intergenic 25.0%
! GCAGAATAACATTAATCTTA+GGG - Chr4:87950832-87950851 None:intergenic 25.0%
! GCTTATACAATATACAAAAC+AGG + Chr4:87949925-87949944 MsG0480023636.01.T01:intron 25.0%
! TCAGGTAAACATGTAATATT+TGG - Chr4:87950175-87950194 None:intergenic 25.0%
! TGAAGATCGATAATTACAAT+TGG - Chr4:87950507-87950526 None:intergenic 25.0%
! TGAATTACCTTATCAAAGAT+GGG - Chr4:87950342-87950361 None:intergenic 25.0%
! TGCAGAATAACATTAATCTT+AGG - Chr4:87950833-87950852 None:intergenic 25.0%
! TTCAAAAAGGAACATTACAA+AGG - Chr4:87951318-87951337 None:intergenic 25.0%
! TTGAATTACCTTATCAAAGA+TGG - Chr4:87950343-87950362 None:intergenic 25.0%
!! ATTTTTATAAACTATCGAGG+AGG - Chr4:87949904-87949923 None:intergenic 25.0%
!! TTTTTATAAACTATCGAGGA+GGG - Chr4:87949903-87949922 None:intergenic 25.0%
!!! GCTATTTTTATAAACTATCG+AGG - Chr4:87949907-87949926 None:intergenic 25.0%
AAAGAAACGCTAATTTAGGT+TGG - Chr4:87950135-87950154 None:intergenic 30.0%
AAGCAAACATGTTGTCTATA+AGG - Chr4:87951397-87951416 None:intergenic 30.0%
ACACATCAATTGACACAATT+TGG + Chr4:87949793-87949812 MsG0480023636.01.T01:intron 30.0%
CAGCTTAAAGTATAAGTGTA+CGG - Chr4:87949967-87949986 None:intergenic 30.0%
GAATTACCTTATCAAAGATG+GGG - Chr4:87950341-87950360 None:intergenic 30.0%
GCATTTCCAAGTAATCAATT+TGG + Chr4:87950249-87950268 MsG0480023636.01.T01:CDS 30.0%
GTGTACGGATAAGTTATTTA+TGG - Chr4:87949952-87949971 None:intergenic 30.0%
TAACAGTAAGGATCCAAAAT+CGG + Chr4:87949528-87949547 MsG0480023636.01.T01:CDS 30.0%
TAACTCCACATAATTTGAGT+TGG - Chr4:87950056-87950075 None:intergenic 30.0%
TATGACAAGTACAAACACAA+AGG + Chr4:87950085-87950104 MsG0480023636.01.T01:CDS 30.0%
TCAATATCAATTGACATGGA+TGG + Chr4:87951149-87951168 MsG0480023636.01.T01:intron 30.0%
TGGAACCAATGATCAAATAT+TGG + Chr4:87950284-87950303 MsG0480023636.01.T01:CDS 30.0%
TTCTTAAAGTCAGGTAAATG+GGG + Chr4:87950974-87950993 MsG0480023636.01.T01:CDS 30.0%
TTTCAATTATGTGTTTGCAG+TGG + Chr4:87950428-87950447 MsG0480023636.01.T01:intron 30.0%
! AATGCAAAGTTGCTCTTTTT+GGG - Chr4:87950700-87950719 None:intergenic 30.0%
! ACTGAATTGGTAGCTTAATT+AGG + Chr4:87950213-87950232 MsG0480023636.01.T01:intron 30.0%
! TGAATAAAAGAGAGTATGGT+CGG - Chr4:87949759-87949778 None:intergenic 30.0%
! TTGTTAATGTTGCTTCCAAA+TGG + Chr4:87949724-87949743 MsG0480023636.01.T01:CDS 30.0%
!! AATATTTGATCATTGGTTCC+AGG - Chr4:87950285-87950304 None:intergenic 30.0%
!! GTTTTCGATTGATTTCATTG+AGG + Chr4:87950019-87950038 MsG0480023636.01.T01:intron 30.0%
!! TTTGTTTTCTTCAATTCTGC+AGG + Chr4:87949647-87949666 MsG0480023636.01.T01:intron 30.0%
AAACTCCATTACCTCTGTTT+CGG + Chr4:87949436-87949455 MsG0480023636.01.T01:five_prime_UTR 35.0%
AACTTATAAGTTCATCTCCG+TGG + Chr4:87950903-87950922 MsG0480023636.01.T01:intron 35.0%
AAGCAACATTAACAATGAGG+AGG - Chr4:87949719-87949738 None:intergenic 35.0%
AGAATTCCCCATCTTTGATA+AGG + Chr4:87950332-87950351 MsG0480023636.01.T01:CDS 35.0%
AGACATCTGTAAACTACTTG+GGG + Chr4:87951219-87951238 MsG0480023636.01.T01:CDS 35.0%
ATACATACATGGATTCAGCT+TGG + Chr4:87951250-87951269 MsG0480023636.01.T01:three_prime_UTR 35.0%
ATCCTTGTCAACTAGAAACT+TGG - Chr4:87951032-87951051 None:intergenic 35.0%
ATGAGATGAGATGACTGAAT+TGG + Chr4:87950200-87950219 MsG0480023636.01.T01:intron 35.0%
ATTACAGTTCACATTAGCAG+TGG - Chr4:87950580-87950599 None:intergenic 35.0%
CAAAAAGAGCAACTTTGCAT+TGG + Chr4:87950699-87950718 MsG0480023636.01.T01:intron 35.0%
CATGACCAACTCAAATTATG+TGG + Chr4:87950048-87950067 MsG0480023636.01.T01:CDS 35.0%
GAGACATCTGTAAACTACTT+GGG + Chr4:87951218-87951237 MsG0480023636.01.T01:CDS 35.0%
GGGTTGAATGAATACATACA+TGG + Chr4:87951239-87951258 MsG0480023636.01.T01:exon 35.0%
TGGAAGCAACATTAACAATG+AGG - Chr4:87949722-87949741 None:intergenic 35.0%
TGTGCTAGATTGAAGTGAAT+GGG + Chr4:87950927-87950946 MsG0480023636.01.T01:intron 35.0%
TGTTGCGTATGTAATTCTTC+TGG + Chr4:87951176-87951195 MsG0480023636.01.T01:intron 35.0%
TTAATTAGGCCTTGAGATTC+TGG + Chr4:87950227-87950246 MsG0480023636.01.T01:intron 35.0%
TTGTGCTAGATTGAAGTGAA+TGG + Chr4:87950926-87950945 MsG0480023636.01.T01:intron 35.0%
TTTGGATCCTTACTGTTACT+GGG - Chr4:87949526-87949545 None:intergenic 35.0%
! AGGTAAATGGGGAATTTTTG+GGG + Chr4:87950985-87951004 MsG0480023636.01.T01:CDS 35.0%
! CAATGCAAAGTTGCTCTTTT+TGG - Chr4:87950701-87950720 None:intergenic 35.0%
! CAGGTAAATGGGGAATTTTT+GGG + Chr4:87950984-87951003 MsG0480023636.01.T01:CDS 35.0%
! CTTGACTAGTTGTACTTAGT+TGG + Chr4:87950614-87950633 MsG0480023636.01.T01:intron 35.0%
! TCAGGTAAATGGGGAATTTT+TGG + Chr4:87950983-87951002 MsG0480023636.01.T01:CDS 35.0%
! TTGACTGCACGACTTTTAAT+AGG + Chr4:87950750-87950769 MsG0480023636.01.T01:intron 35.0%
! TTTTCTTCAATTCTGCAGGA+TGG + Chr4:87949651-87949670 MsG0480023636.01.T01:intron 35.0%
! TTTTGGATCCTTACTGTTAC+TGG - Chr4:87949527-87949546 None:intergenic 35.0%
!! AAGTTTCTAGTTGACAAGGA+TGG + Chr4:87951031-87951050 MsG0480023636.01.T01:CDS 35.0%
!! AGAGTTTGAGTTGAGTTGTT+TGG + Chr4:87949406-87949425 MsG0480023636.01.T01:five_prime_UTR 35.0%
!! TTTTTGGGGATGATATTCAG+TGG + Chr4:87950999-87951018 MsG0480023636.01.T01:CDS 35.0%
AACTATCGAGGAGGGATTAT+AGG - Chr4:87949895-87949914 None:intergenic 40.0%
AACTCCATTACCTCTGTTTC+GGG + Chr4:87949437-87949456 MsG0480023636.01.T01:five_prime_UTR 40.0%
ACACTTTGCATTGTTTGCAG+TGG + Chr4:87950459-87950478 MsG0480023636.01.T01:intron 40.0%
ACTTCAATCTAGCACAACCA+CGG - Chr4:87950923-87950942 None:intergenic 40.0%
AGCATAAAACAGACAGAGAG+AGG - Chr4:87949582-87949601 None:intergenic 40.0%
ATAATGCTCCATGTACCTCA+AGG - Chr4:87951099-87951118 None:intergenic 40.0%
ATGGATTCAGCTTGGAAAAG+AGG + Chr4:87951258-87951277 MsG0480023636.01.T01:three_prime_UTR 40.0%
ATTCAGCTTGGAAAAGAGGA+TGG + Chr4:87951262-87951281 MsG0480023636.01.T01:three_prime_UTR 40.0%
CATCTCATCTCATGTGTATC+AGG - Chr4:87950193-87950212 None:intergenic 40.0%
CGAGACATCTGTAAACTACT+TGG + Chr4:87951217-87951236 MsG0480023636.01.T01:CDS 40.0%
GCATAAAACAGACAGAGAGA+GGG - Chr4:87949581-87949600 None:intergenic 40.0%
GGTCGGATATACATACCATT+TGG - Chr4:87949742-87949761 None:intergenic 40.0%
GTGCTAGATTGAAGTGAATG+GGG + Chr4:87950928-87950947 MsG0480023636.01.T01:intron 40.0%
TCAATTCTGCAGGATGGTAA+GGG + Chr4:87949657-87949676 MsG0480023636.01.T01:intron 40.0%
TCCAAGTAATCAATTTGGCG+AGG + Chr4:87950254-87950273 MsG0480023636.01.T01:CDS 40.0%
TCCATCAAGTCAAGTGAGTA+CGG + Chr4:87949481-87949500 MsG0480023636.01.T01:five_prime_UTR 40.0%
TCCTCGCCAAATTGATTACT+TGG - Chr4:87950258-87950277 None:intergenic 40.0%
TTCAATTCTGCAGGATGGTA+AGG + Chr4:87949656-87949675 MsG0480023636.01.T01:intron 40.0%
TTCCTTAACATGTGCCCTTA+GGG - Chr4:87950677-87950696 None:intergenic 40.0%
TTGGAAATGCCAGAATCTCA+AGG - Chr4:87950239-87950258 None:intergenic 40.0%
! GATTGATTTCATTGAGGCAG+TGG + Chr4:87950025-87950044 MsG0480023636.01.T01:intron 40.0%
!! AATGTTAACTTGTGCCCTCA+AGG - Chr4:87950808-87950827 None:intergenic 40.0%
!! ATGTTAACTTGTGCCCTCAA+GGG - Chr4:87950807-87950826 None:intergenic 40.0%
!! CATGTTAACTTGTGCCCTAA+GGG + Chr4:87950660-87950679 MsG0480023636.01.T01:intron 40.0%
!! TCATGTTAACTTGTGCCCTA+AGG + Chr4:87950659-87950678 MsG0480023636.01.T01:intron 40.0%
!! TGCCAAGTTTCTAGTTGACA+AGG + Chr4:87951027-87951046 MsG0480023636.01.T01:CDS 40.0%
AAAACAGACAGAGAGAGGGA+AGG - Chr4:87949577-87949596 None:intergenic 45.0%
AGTTGACAAGGATGGTCAAG+TGG + Chr4:87951039-87951058 MsG0480023636.01.T01:CDS 45.0%
CGATATCACAAGTGTGCTTC+TGG - Chr4:87949845-87949864 None:intergenic 45.0%
GAGGACTTTACCCTTGTAAG+TGG - Chr4:87949700-87949719 None:intergenic 45.0%
GTTCCTTAACATGTGCCCTT+AGG - Chr4:87950808-87950789 None:intergenic 45.0%
GTTGATCTCGCCACTTACAA+GGG + Chr4:87949687-87949706 MsG0480023636.01.T01:CDS 45.0%
TCCTTAACATGTGCCCTTGA+GGG + Chr4:87950791-87950810 MsG0480023636.01.T01:intron 45.0%
TGTTGATCTCGCCACTTACA+AGG + Chr4:87949686-87949705 MsG0480023636.01.T01:CDS 45.0%
TTCCTTAACATGTGCCCTTG+AGG + Chr4:87950790-87950809 MsG0480023636.01.T01:intron 45.0%
! ACCGTACTCACTTGACTTGA+TGG - Chr4:87949485-87949504 None:intergenic 45.0%
! GTACTCACTTGACTTGATGG+AGG - Chr4:87949482-87949501 None:intergenic 45.0%
!! GTGAAGTCGTAGACCGATTT+TGG - Chr4:87949544-87949563 None:intergenic 45.0%
ACCGAGCAAACATAGTGCAG+AGG - Chr4:87950403-87950422 None:intergenic 50.0%
CAAGAAGAGACCCGAAACAG+AGG - Chr4:87949450-87949469 None:intergenic 50.0%
CAATTTGGCGAGGAAGAACC+TGG + Chr4:87950264-87950283 MsG0480023636.01.T01:CDS 50.0%
CAGCGAACCCAGTAACAGTA+AGG + Chr4:87949516-87949535 MsG0480023636.01.T01:CDS 50.0%
CCATGTACCTCAAGGCTAAG+AGG - Chr4:87951091-87951110 None:intergenic 50.0%
GAGACCCGAAACAGAGGTAA+TGG - Chr4:87949444-87949463 None:intergenic 50.0%
GCCTCTGCACTATGTTTGCT+CGG + Chr4:87950399-87950418 MsG0480023636.01.T01:intron 50.0%
GGTCTACGACTTCACTCTCA+AGG + Chr4:87949549-87949568 MsG0480023636.01.T01:CDS 50.0%
TACCTCAAGGCTAAGAGGAG+AGG - Chr4:87951086-87951105 None:intergenic 50.0%
TGACAAGGATGGTCAAGTGG+TGG + Chr4:87951042-87951061 MsG0480023636.01.T01:CDS 50.0%
! TGCCCTAAGGGCACATGTTA+AGG + Chr4:87950672-87950691 MsG0480023636.01.T01:intron 50.0%
!! CCTCTTAGCCTTGAGGTACA+TGG + Chr4:87951088-87951107 MsG0480023636.01.T01:intron 50.0%
AAGGCTAAGAGGAGAGGTGG+TGG - Chr4:87951080-87951099 None:intergenic 55.0%
AGGCTAAGAGGAGAGGTGGT+GGG - Chr4:87951079-87951098 None:intergenic 55.0%
CTCAAGGCTAAGAGGAGAGG+TGG - Chr4:87951083-87951102 None:intergenic 55.0%
! GCCCTCAAGGGCACATGTTA+AGG - Chr4:87950795-87950814 None:intergenic 55.0%
!! CACCTCTCCTCTTAGCCTTG+AGG + Chr4:87951081-87951100 MsG0480023636.01.T01:CDS 55.0%
Chromosome Type Strat End Strand Name
Chr4 gene 87949404 87951495 87949404 ID=MsG0480023636.01;Name=MsG0480023636.01
Chr4 mRNA 87949404 87951495 87949404 ID=MsG0480023636.01.T01;Parent=MsG0480023636.01;Name=MsG0480023636.01.T01;_AED=0.44;_eAED=0.44;_QI=107|0.6|0.5|1|0.8|0.83|6|246|172
Chr4 exon 87949404 87949570 87949404 ID=MsG0480023636.01.T01:exon:3242;Parent=MsG0480023636.01.T01
Chr4 exon 87949669 87949745 87949669 ID=MsG0480023636.01.T01:exon:3243;Parent=MsG0480023636.01.T01
Chr4 exon 87950045 87950106 87950045 ID=MsG0480023636.01.T01:exon:3244;Parent=MsG0480023636.01.T01
Chr4 exon 87950235 87950353 87950235 ID=MsG0480023636.01.T01:exon:3245;Parent=MsG0480023636.01.T01
Chr4 exon 87950935 87951102 87950935 ID=MsG0480023636.01.T01:exon:3246;Parent=MsG0480023636.01.T01
Chr4 exon 87951217 87951495 87951217 ID=MsG0480023636.01.T01:exon:3247;Parent=MsG0480023636.01.T01
Chr4 five_prime_UTR 87949404 87949510 87949404 ID=MsG0480023636.01.T01:five_prime_utr;Parent=MsG0480023636.01.T01
Chr4 CDS 87949511 87949570 87949511 ID=MsG0480023636.01.T01:cds;Parent=MsG0480023636.01.T01
Chr4 CDS 87949669 87949745 87949669 ID=MsG0480023636.01.T01:cds;Parent=MsG0480023636.01.T01
Chr4 CDS 87950045 87950106 87950045 ID=MsG0480023636.01.T01:cds;Parent=MsG0480023636.01.T01
Chr4 CDS 87950235 87950353 87950235 ID=MsG0480023636.01.T01:cds;Parent=MsG0480023636.01.T01
Chr4 CDS 87950935 87951102 87950935 ID=MsG0480023636.01.T01:cds;Parent=MsG0480023636.01.T01
Chr4 CDS 87951217 87951249 87951217 ID=MsG0480023636.01.T01:cds;Parent=MsG0480023636.01.T01
Chr4 three_prime_UTR 87951250 87951495 87951250 ID=MsG0480023636.01.T01:three_prime_utr;Parent=MsG0480023636.01.T01
Gene Sequence

>MsG0480023636.01.T01

ATGAGCAGCGAACCCAGTAACAGTAAGGATCCAAAATCGGTCTACGACTTCACTCTCAAGGATGGTAAGGGAAATGATGTTGATCTCGCCACTTACAAGGGTAAAGTCCTCCTCATTGTTAATGTTGCTTCCAAATGTGGCATGACCAACTCAAATTATGTGGAGTTAAATCAACTATATGACAAGTACAAACACAAAGGCCTTGAGATTCTGGCATTTCCAAGTAATCAATTTGGCGAGGAAGAACCTGGAACCAATGATCAAATATTGGATTTTGTTTGTACTCGCTTCAAATCAGAATTCCCCATCTTTGATAAGATTGAAGTGAATGGGGACAATTCTGCTCCCTTGTATAAATTCTTAAAGTCAGGTAAATGGGGAATTTTTGGGGATGATATTCAGTGGAACTTTGCCAAGTTTCTAGTTGACAAGGATGGTCAAGTGGTGGATCGATATTATCCCACCACCTCTCCTCTTAGCCTTGAGCGAGACATCTGTAAACTACTTGGGGTTGAATGA

Protein sequence

>MsG0480023636.01.T01

MSSEPSNSKDPKSVYDFTLKDGKGNDVDLATYKGKVLLIVNVASKCGMTNSNYVELNQLYDKYKHKGLEILAFPSNQFGEEEPGTNDQILDFVCTRFKSEFPIFDKIEVNGDNSAPLYKFLKSGKWGIFGDDIQWNFAKFLVDKDGQVVDRYYPTTSPLSLERDICKLLGVE*