AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380011910.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380011910.01.T02 MTR_3g030250 71.053 76 22 0 1 76 288 363 3.25e-32 116
MsG0380011910.01.T02 MTR_3g010520 69.737 76 23 0 1 76 268 343 1.39e-30 112
MsG0380011910.01.T02 MTR_3g010920 70.130 77 21 1 2 76 289 365 1.46e-30 112
MsG0380011910.01.T02 MTR_3g010870 60.227 88 35 0 1 88 225 312 1.83e-30 110
MsG0380011910.01.T02 MTR_3g010870 60.227 88 35 0 1 88 293 380 4.74e-30 111
MsG0380011910.01.T02 MTR_3g023930 68.421 76 24 0 1 76 276 351 6.73e-30 110
MsG0380011910.01.T02 MTR_3g030240 67.105 76 25 0 1 76 286 361 6.25e-29 108
MsG0380011910.01.T02 MTR_3g006500 64.474 76 27 0 1 76 278 353 2.15e-28 106
MsG0380011910.01.T02 MTR_3g030330 57.447 94 34 2 1 88 274 367 3.31e-27 103
MsG0380011910.01.T02 MTR_3g006550 63.636 77 27 1 1 76 45 121 1.07e-26 96.7
MsG0380011910.01.T02 MTR_3g010880 64.474 76 26 1 1 76 250 324 1.14e-25 98.6
MsG0380011910.01.T02 MTR_3g010970 63.636 77 26 1 2 76 299 375 3.32e-25 98.2
MsG0380011910.01.T02 MTR_2g078850 59.740 77 30 1 1 76 291 367 9.33e-25 96.7
MsG0380011910.01.T02 MTR_3g010590 63.750 80 23 1 3 76 290 369 2.33e-24 95.9
MsG0380011910.01.T02 MTR_3g023940 57.895 76 26 1 1 76 298 367 5.69e-23 92.0
MsG0380011910.01.T02 MTR_3g024150 56.000 75 33 0 1 75 294 368 2.44e-22 90.5
MsG0380011910.01.T02 MTR_2g078870 47.778 90 45 1 1 88 214 303 7.16e-22 88.2
MsG0380011910.01.T02 MTR_6g065980 52.174 92 39 2 1 91 264 351 9.24e-22 88.6
MsG0380011910.01.T02 MTR_3g010620 51.613 93 27 2 2 76 284 376 1.57e-20 85.5
MsG0380011910.01.T02 MTR_0044s0300 50.649 77 37 1 1 76 297 373 4.82e-20 84.0
MsG0380011910.01.T02 MTR_8g013810 88.372 43 5 0 79 121 449 491 1.49e-19 83.2
MsG0380011910.01.T02 MTR_3g010430 44.944 89 48 1 1 88 300 388 1.59e-19 82.8
MsG0380011910.01.T02 MTR_3g024110 53.247 77 35 1 1 76 355 431 2.07e-19 82.4
MsG0380011910.01.T02 MTR_1g089745 85.366 41 6 0 81 121 51 91 8.68e-19 75.9
MsG0380011910.01.T02 MTR_7g498320 52.000 75 35 1 1 74 151 225 8.93e-19 78.6
MsG0380011910.01.T02 MTR_3g083660 51.948 77 36 1 1 76 188 264 9.20e-19 79.3
MsG0380011910.01.T02 MTR_1g115160 42.529 87 50 0 2 88 276 362 1.01e-18 80.1
MsG0380011910.01.T02 MTR_3g006570 44.444 90 48 2 1 88 283 372 3.68e-18 79.0
MsG0380011910.01.T02 MTR_3g036430 43.820 89 48 2 1 88 251 338 4.14e-17 75.5
MsG0380011910.01.T02 MTR_3g030320 50.633 79 34 2 1 76 205 281 1.85e-16 73.6
MsG0380011910.01.T02 MTR_2g078900 60.000 55 21 1 1 54 291 345 3.29e-16 73.2
MsG0380011910.01.T02 MTR_1g113900 47.368 76 37 2 2 76 156 229 6.05e-16 71.2
MsG0380011910.01.T02 MTR_2g021155 40.000 115 57 4 2 113 300 405 2.10e-15 71.2
MsG0380011910.01.T02 MTR_2g021155 46.154 78 30 3 4 75 867 938 2.96e-13 65.1
MsG0380011910.01.T02 MTR_1g114700 41.758 91 46 3 2 88 296 383 2.63e-15 70.9
MsG0380011910.01.T02 MTR_3g030350 48.101 79 38 2 1 76 294 372 2.91e-15 70.9
MsG0380011910.01.T02 MTR_2g021190 40.698 86 44 2 2 86 287 366 5.73e-15 69.7
MsG0380011910.01.T02 MTR_3g006640 43.038 79 42 1 1 76 198 276 7.58e-15 68.9
MsG0380011910.01.T02 MTR_3g083640 41.758 91 46 2 1 88 312 398 1.66e-14 68.6
MsG0380011910.01.T02 MTR_5g046300 45.349 86 45 2 3 88 263 346 2.27e-14 68.2
MsG0380011910.01.T02 MTR_5g046290 45.349 86 45 2 3 88 263 346 2.27e-14 68.2
MsG0380011910.01.T02 MTR_3g096250 43.182 88 35 1 1 88 269 341 3.11e-14 67.8
MsG0380011910.01.T02 MTR_2g029990 44.444 81 38 3 2 81 317 391 3.89e-14 67.4
MsG0380011910.01.T02 MTR_2g021210 43.210 81 39 2 2 81 339 413 5.10e-14 67.4
MsG0380011910.01.T02 MTR_1g114650 48.000 75 36 2 2 76 137 208 8.35e-14 65.5
MsG0380011910.01.T02 MTR_5g046280 44.186 86 46 2 3 88 166 249 1.13e-13 65.5
MsG0380011910.01.T02 MTR_1g112930 48.611 72 34 2 1 71 282 351 2.56e-13 65.1
MsG0380011910.01.T02 MTR_3g013770 43.421 76 37 4 3 75 303 375 5.67e-13 64.3
MsG0380011910.01.T02 MTR_1004s0010 40.659 91 52 1 1 91 270 358 6.36e-13 63.9
MsG0380011910.01.T02 MTR_0760s0010 40.909 88 50 1 1 88 300 385 6.69e-13 63.9
MsG0380011910.01.T02 MTR_2g021252 37.209 86 47 2 2 86 299 378 8.99e-13 63.5
MsG0380011910.01.T02 MTR_3g006530 38.636 88 51 2 2 88 307 392 9.12e-13 63.5
MsG0380011910.01.T02 MTR_3g036290 41.892 74 37 2 4 75 274 343 9.18e-13 63.5
MsG0380011910.01.T02 MTR_8g062660 41.096 73 40 2 4 76 296 365 1.19e-12 63.5
MsG0380011910.01.T02 MTR_3g036335 44.304 79 36 3 1 75 304 378 1.21e-12 63.2
MsG0380011910.01.T02 MTR_1g115180 46.053 76 38 2 2 76 114 187 2.09e-12 61.6
MsG0380011910.01.T02 MTR_3g014540 40.000 75 37 3 4 75 296 365 2.94e-12 62.4
MsG0380011910.01.T02 MTR_5g026830 39.474 76 40 3 4 76 197 269 5.06e-12 61.2
MsG0380011910.01.T02 MTR_6g014720 44.000 75 39 2 2 75 279 351 5.36e-12 61.6
MsG0380011910.01.T02 MTR_3g096280 35.714 84 53 1 6 88 255 338 6.85e-12 61.2
MsG0380011910.01.T02 MTR_1g115185 44.737 76 39 2 2 76 305 378 7.36e-12 61.2
MsG0380011910.01.T02 MTR_6g013270 44.000 75 39 2 2 75 297 369 8.72e-12 60.8
MsG0380011910.01.T02 MTR_3g030310 39.759 83 35 3 2 71 289 369 1.44e-11 60.1
MsG0380011910.01.T02 MTR_3g024130 43.243 74 36 3 4 74 231 301 2.59e-11 59.3
MsG0380011910.01.T02 MTR_6g021880 43.038 79 38 2 2 79 295 367 2.96e-11 59.3
MsG0380011910.01.T02 MTR_6g007135 41.463 82 35 3 2 76 299 374 5.29e-11 58.5
MsG0380011910.01.T02 MTR_3g006670 42.169 83 37 3 4 76 317 398 7.77e-11 58.2
MsG0380011910.01.T01 MTR_3g010870 64.706 153 53 1 3 154 160 312 2.10e-62 196
MsG0380011910.01.T01 MTR_3g010870 64.706 153 53 1 3 154 228 380 9.47e-62 196
MsG0380011910.01.T01 MTR_3g030330 62.733 161 53 3 1 154 207 367 3.53e-61 194
MsG0380011910.01.T01 MTR_3g010920 61.806 144 47 2 1 142 228 365 2.11e-55 180
MsG0380011910.01.T01 MTR_3g010880 57.692 156 50 4 1 142 171 324 4.15e-52 170
MsG0380011910.01.T01 MTR_3g010970 60.140 143 49 2 2 142 239 375 1.29e-51 170
MsG0380011910.01.T01 MTR_3g030250 60.839 143 51 3 1 142 225 363 1.56e-51 169
MsG0380011910.01.T01 MTR_3g030240 60.563 142 50 2 1 142 226 361 1.90e-51 169
MsG0380011910.01.T01 MTR_3g010590 61.486 148 47 2 1 142 226 369 2.77e-51 169
MsG0380011910.01.T01 MTR_3g023940 54.967 151 53 2 1 142 223 367 4.65e-50 166
MsG0380011910.01.T01 MTR_3g023930 60.284 141 50 2 2 142 217 351 2.47e-49 164
MsG0380011910.01.T01 MTR_3g010520 61.871 139 46 3 5 142 211 343 5.27e-49 162
MsG0380011910.01.T01 MTR_3g024150 56.738 141 56 2 5 141 229 368 3.96e-47 158
MsG0380011910.01.T01 MTR_2g078850 56.338 142 60 2 2 142 227 367 2.83e-45 153
MsG0380011910.01.T01 MTR_0044s0300 55.479 146 59 3 1 142 230 373 5.68e-45 153
MsG0380011910.01.T01 MTR_3g006500 57.554 139 54 3 6 142 218 353 9.86e-45 152
MsG0380011910.01.T01 MTR_6g065980 52.597 154 66 4 5 157 204 351 2.43e-43 148
MsG0380011910.01.T01 MTR_3g010620 51.875 160 53 3 1 142 223 376 1.82e-42 146
MsG0380011910.01.T01 MTR_2g078870 50.000 152 74 1 5 154 152 303 7.67e-42 143
MsG0380011910.01.T01 MTR_2g078900 57.377 122 49 2 2 120 224 345 1.81e-38 135
MsG0380011910.01.T01 MTR_3g036430 45.033 151 77 4 5 154 193 338 4.48e-36 129
MsG0380011910.01.T01 MTR_3g083660 49.296 142 68 3 2 142 126 264 7.42e-36 126
MsG0380011910.01.T01 MTR_1g113900 48.951 143 69 3 2 142 89 229 9.76e-36 125
MsG0380011910.01.T01 MTR_7g498320 49.645 141 65 3 1 140 90 225 2.25e-35 124
MsG0380011910.01.T01 MTR_3g006640 46.259 147 72 4 3 142 130 276 2.91e-35 125
MsG0380011910.01.T01 MTR_5g046300 46.452 155 78 4 2 154 195 346 7.83e-34 123
MsG0380011910.01.T01 MTR_5g046290 46.452 155 78 4 2 154 195 346 7.83e-34 123
MsG0380011910.01.T01 MTR_5g046280 45.806 155 79 4 2 154 98 249 1.23e-33 120
MsG0380011910.01.T01 MTR_1004s0010 46.104 154 78 3 2 154 206 355 2.37e-33 122
MsG0380011910.01.T01 MTR_3g030320 50.000 144 62 5 5 142 142 281 2.53e-33 120
MsG0380011910.01.T01 MTR_3g006570 44.156 154 80 4 5 154 221 372 3.10e-33 122
MsG0380011910.01.T01 MTR_0760s0010 46.104 154 78 3 2 154 236 385 4.04e-33 122
MsG0380011910.01.T01 MTR_3g024110 49.315 146 66 5 1 142 290 431 5.03e-33 122
MsG0380011910.01.T01 MTR_2g021190 43.421 152 78 3 3 152 221 366 6.43e-33 121
MsG0380011910.01.T01 MTR_3g010430 43.791 153 71 3 3 154 250 388 8.15e-32 119
MsG0380011910.01.T01 MTR_3g036335 46.897 145 66 5 2 141 240 378 8.59e-32 118
MsG0380011910.01.T01 MTR_1g115160 43.046 151 84 1 6 154 212 362 1.68e-30 114
MsG0380011910.01.T01 MTR_1g114650 46.763 139 70 3 5 142 73 208 2.09e-30 111
MsG0380011910.01.T01 MTR_3g083640 42.581 155 80 3 3 154 250 398 3.86e-30 114
MsG0380011910.01.T01 MTR_3g030350 47.945 146 70 4 3 142 227 372 1.56e-29 112
MsG0380011910.01.T01 MTR_2g021155 40.217 184 95 6 2 179 231 405 1.41e-28 112
MsG0380011910.01.T01 MTR_2g021155 41.892 148 72 5 2 141 797 938 1.21e-24 100
MsG0380011910.01.T01 MTR_3g030310 40.909 154 70 5 1 137 220 369 3.98e-28 108
MsG0380011910.01.T01 MTR_6g014720 42.759 145 77 4 2 142 210 352 5.53e-28 108
MsG0380011910.01.T01 MTR_6g013270 43.151 146 75 5 2 142 228 370 1.75e-27 107
MsG0380011910.01.T01 MTR_2g029990 43.537 147 72 5 6 147 251 391 1.94e-27 107
MsG0380011910.01.T01 MTR_3g006530 40.397 151 84 4 5 154 247 392 1.33e-26 104
MsG0380011910.01.T01 MTR_3g006550 55.556 90 39 1 66 154 44 133 5.30e-26 97.4
MsG0380011910.01.T01 MTR_6g053240 39.333 150 79 5 6 146 237 383 5.88e-26 102
MsG0380011910.01.T01 MTR_3g096250 44.604 139 57 3 20 154 219 341 7.08e-26 102
MsG0380011910.01.T01 MTR_1g115180 47.500 120 59 3 25 142 70 187 1.15e-25 98.6
MsG0380011910.01.T01 MTR_8g062660 40.580 138 71 4 5 142 239 365 1.65e-25 102
MsG0380011910.01.T01 MTR_1g114700 40.645 155 84 4 5 154 232 383 2.91e-25 100
MsG0380011910.01.T01 MTR_2g021252 39.216 153 72 4 2 152 245 378 3.71e-25 100
MsG0380011910.01.T01 MTR_6g053260 38.065 155 84 5 1 146 536 687 1.56e-24 100
MsG0380011910.01.T01 MTR_6g021880 41.667 144 74 4 6 145 230 367 1.87e-24 98.6
MsG0380011910.01.T01 MTR_2g435950 40.146 137 71 4 6 139 153 281 4.73e-24 96.3
MsG0380011910.01.T01 MTR_3g006670 40.909 154 73 7 2 142 250 398 4.76e-24 97.8
MsG0380011910.01.T01 MTR_3g007330 45.038 131 61 5 6 131 246 370 5.13e-24 97.4
MsG0380011910.01.T01 MTR_1g112930 43.284 134 69 3 5 137 224 351 9.71e-24 96.7
MsG0380011910.01.T01 MTR_1g115185 40.789 152 86 3 5 154 241 390 9.97e-24 97.1
MsG0380011910.01.T01 MTR_3g036290 41.429 140 70 5 6 141 212 343 2.99e-23 95.1
MsG0380011910.01.T01 MTR_3g013770 38.732 142 74 6 6 141 241 375 3.41e-23 95.1
MsG0380011910.01.T01 MTR_3g024130 41.844 141 69 6 6 140 168 301 8.47e-23 93.2
MsG0380011910.01.T01 MTR_7g007300 40.385 156 83 6 5 154 290 441 9.24e-23 94.4
MsG0380011910.01.T01 MTR_6g007135 39.726 146 72 5 6 141 234 373 1.65e-22 93.2
MsG0380011910.01.T01 MTR_5g011200 37.037 162 89 5 5 158 218 374 2.67e-22 92.8
MsG0380011910.01.T01 MTR_3g007410 40.000 140 72 6 7 141 258 390 4.09e-22 92.4
MsG0380011910.01.T01 MTR_3g096280 36.601 153 70 3 5 154 210 338 5.24e-22 91.7
MsG0380011910.01.T01 MTR_3g014540 36.620 142 76 6 6 141 232 365 6.57e-22 91.7
MsG0380011910.01.T01 MTR_2g021210 43.836 146 72 5 6 147 274 413 1.03e-21 91.7
MsG0380011910.01.T01 MTR_3g011100 42.208 154 70 8 6 148 443 588 1.63e-21 91.3
MsG0380011910.01.T01 MTR_3g007270 40.741 135 69 6 6 135 261 389 2.83e-21 90.1
MsG0380011910.01.T01 MTR_3g007360 39.286 140 73 6 7 141 258 390 2.84e-21 90.1
MsG0380011910.01.T01 MTR_1g054725 35.374 147 85 5 1 142 219 360 4.10e-21 89.4
MsG0380011910.01.T01 MTR_6g007150 37.162 148 76 5 6 142 179 320 6.13e-21 88.6
MsG0380011910.01.T01 MTR_6g027890 38.571 140 76 4 6 141 177 310 9.51e-21 87.8
MsG0380011910.01.T01 MTR_1g058190 43.182 132 70 4 1 131 217 344 1.04e-20 88.2
MsG0380011910.01.T01 MTR_6g048140 39.583 144 77 5 6 142 244 384 1.28e-20 88.2
MsG0380011910.01.T01 MTR_6g004210 35.329 167 83 6 6 154 242 401 1.47e-20 88.2
MsG0380011910.01.T01 MTR_3g010440 41.958 143 62 6 6 135 170 304 2.51e-20 86.7
MsG0380011910.01.T01 MTR_4g031770 33.951 162 95 2 5 154 203 364 2.54e-20 87.0
MsG0380011910.01.T01 MTR_4g055060 40.141 142 74 5 5 141 238 373 3.96e-20 86.7
MsG0380011910.01.T01 MTR_5g009060 38.732 142 73 5 6 141 253 386 4.67e-20 86.7
MsG0380011910.01.T01 MTR_1g056280 36.842 152 80 4 5 142 59 208 5.22e-20 84.0
MsG0380011910.01.T01 MTR_3g009240 39.394 132 73 3 6 134 236 363 5.87e-20 86.3
MsG0380011910.01.T01 MTR_1g055375 38.194 144 84 3 3 142 208 350 8.15e-20 85.9
MsG0380011910.01.T01 MTR_3g024040 40.000 135 75 5 6 137 222 353 8.74e-20 85.9
MsG0380011910.01.T01 MTR_3g010390 39.865 148 73 7 6 142 244 386 1.09e-19 85.5
MsG0380011910.01.T01 MTR_3g436150 38.194 144 80 4 2 140 240 379 1.18e-19 85.5
MsG0380011910.01.T01 MTR_5g026830 41.228 114 56 5 34 142 162 269 1.53e-19 84.0
MsG0380011910.01.T01 MTR_7g013590 36.620 142 78 5 6 141 238 373 1.62e-19 85.1
MsG0380011910.01.T01 MTR_5g057790 38.571 140 75 5 6 141 247 379 1.91e-19 85.1
MsG0380011910.01.T01 MTR_4g061340 36.496 137 74 5 7 142 238 362 1.96e-19 84.7
MsG0380011910.01.T01 MTR_6g027910 36.957 138 77 4 6 141 229 358 2.01e-19 84.7
MsG0380011910.01.T01 MTR_3g007390 36.957 138 75 5 7 142 65 192 3.01e-19 81.6
MsG0380011910.01.T01 MTR_1g055065 37.580 157 89 7 3 154 131 283 8.73e-19 82.0
MsG0380011910.01.T01 MTR_8g013810 52.500 80 32 1 108 187 418 491 9.33e-19 83.6
MsG0380011910.01.T01 MTR_5g046260 34.641 153 61 3 2 154 180 293 1.34e-18 81.6
MsG0380011910.01.T01 MTR_1g055045 35.714 154 90 6 5 154 9 157 1.36e-18 79.0
MsG0380011910.01.T01 MTR_1g057890 39.437 142 61 7 25 154 224 352 1.75e-18 82.0
MsG0380011910.01.T01 MTR_1g100763 42.748 131 68 5 5 131 169 296 2.00e-18 81.3
MsG0380011910.01.T01 MTR_6g048120 36.486 148 81 5 1 142 242 382 2.23e-18 82.0
MsG0380011910.01.T01 MTR_5g056990 37.762 143 79 4 3 141 89 225 2.47e-18 80.1
MsG0380011910.01.T01 MTR_8g054320 35.664 143 78 6 6 142 155 289 3.62e-18 80.5
MsG0380011910.01.T01 MTR_1g089745 85.366 41 6 0 147 187 51 91 5.11e-18 75.9
MsG0380011910.01.T01 MTR_3g007430 38.519 135 57 6 7 126 248 371 5.47e-18 80.9
MsG0380011910.01.T01 MTR_3g009300 35.374 147 80 5 6 144 204 343 7.25e-18 80.1
MsG0380011910.01.T01 MTR_5g057710 37.857 140 77 4 6 141 247 380 8.43e-18 80.5
MsG0380011910.01.T01 MTR_7g407070 36.054 147 83 5 3 142 245 387 8.66e-18 80.5
MsG0380011910.01.T01 MTR_6g004660 36.641 131 72 4 6 131 228 352 1.34e-17 79.7
MsG0380011910.01.T01 MTR_3g011020 35.616 146 83 5 3 142 219 359 1.42e-17 79.7
MsG0380011910.01.T01 MTR_4g132560 36.620 142 79 6 6 142 106 241 2.07e-17 77.8
MsG0380011910.01.T01 MTR_2g021150 32.051 156 91 6 6 154 217 364 2.35e-17 79.0
MsG0380011910.01.T01 MTR_3g014570 35.211 142 80 6 6 141 231 366 4.94e-17 78.2
MsG0380011910.01.T01 MTR_3g013740 35.616 146 78 7 6 142 257 395 8.25e-17 77.4
MsG0380011910.01.T01 MTR_3g011060 35.664 143 80 6 3 140 238 373 1.33e-16 77.0
MsG0380011910.01.T01 MTR_7g067680 40.984 122 56 4 25 142 249 358 1.68e-16 76.6
MsG0380011910.01.T01 MTR_1g055055 39.416 137 74 6 5 137 210 341 3.84e-16 75.5
MsG0380011910.01.T01 MTR_3g009260 37.143 140 77 4 7 139 235 370 7.54e-16 74.7
MsG0380011910.01.T01 MTR_5g057690 37.143 140 77 5 6 141 237 369 7.73e-16 74.7
MsG0380011910.01.T01 MTR_0015s0100 39.024 123 69 5 34 153 132 251 1.19e-15 73.2
MsG0380011910.01.T01 MTR_3g009310 31.915 141 86 5 6 142 245 379 3.13e-15 73.2
MsG0380011910.01.T01 MTR_5g057020 41.121 107 55 3 6 108 232 334 5.89e-15 72.0
MsG0380011910.01.T01 MTR_2g046830 42.045 88 48 2 6 90 222 309 8.15e-15 72.0
MsG0380011910.01.T01 MTR_1g097560 33.824 136 82 4 5 138 226 355 8.61e-15 71.6
MsG0380011910.01.T01 MTR_3g007300 34.783 138 81 5 6 142 224 353 1.77e-14 70.9
MsG0380011910.01.T01 MTR_3g058470 38.095 105 57 4 35 135 248 348 1.99e-14 70.5
MsG0380011910.01.T01 MTR_5g007610 38.462 117 63 4 3 114 251 363 1.58e-13 68.2
MsG0380011910.01.T01 MTR_1g097330 38.686 137 71 8 2 129 204 336 2.19e-13 67.8
MsG0380011910.01.T01 MTR_2g046920 40.230 87 50 2 6 90 222 308 2.87e-13 67.4
MsG0380011910.01.T01 MTR_3g011660 36.522 115 64 3 30 139 1 111 2.02e-12 61.6
MsG0380011910.01.T01 MTR_1g054575 42.697 89 47 3 6 90 244 332 2.34e-12 65.1
MsG0380011910.01.T01 MTR_4g108810 36.691 139 65 7 6 131 80 208 2.89e-12 63.5
MsG0380011910.01.T01 MTR_1g097490 36.220 127 70 5 5 129 245 362 4.00e-12 63.9
MsG0380011910.01.T01 MTR_8g101580 36.090 133 75 6 3 129 238 366 6.71e-12 63.5
MsG0380011910.01.T01 MTR_1g056710 36.090 133 71 6 7 131 236 362 1.31e-11 62.8
MsG0380011910.01.T01 MTR_7g066100 39.823 113 59 6 5 108 235 347 4.44e-11 61.2
MsG0380011910.01.T01 MTR_2g426070 29.697 165 97 8 5 157 225 382 4.47e-11 61.2
MsG0380011910.01.T01 MTR_6g007130 33.645 107 60 4 41 142 4 104 5.84e-11 57.8
MsG0380011910.01.T01 MTR_4g108820 35.556 90 52 2 2 91 207 290 8.39e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 37 sgRNAs with CRISPR-Local

Find 36 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATTTCCAAATTATTGTATT+TGG 0.144485 3:+7824067 MsG0380011910.01.T01:CDS
GAAATCCAAATACAATAATT+TGG 0.148971 3:-7824072 None:intergenic
TAGTCTACCTTGCACAATTT+TGG 0.157250 3:-7824175 None:intergenic
CTTCGGTAGAAAATAGAATT+TGG 0.217358 3:-7824094 None:intergenic
CTTCTAAATCCTGATCTTGC+AGG 0.300680 3:-7823902 None:intergenic
GCTGGTGGAGTTTAATGATT+TGG 0.319575 3:+7823962 MsG0380011910.01.T01:CDS
TTGTGAGTGGTGCTGTTAAT+TGG 0.321485 3:+7823646 MsG0380011910.01.T01:CDS
GTTTGGATTATGAAGGAGTA+TGG 0.326969 3:+7823840 MsG0380011910.01.T01:CDS
TTTGACTCATTCTCAAAATC+AGG 0.343466 3:-7823750 None:intergenic
GTGATATGTTCTTGAATGTT+TGG 0.344115 3:+7823823 MsG0380011910.01.T01:CDS
AAATCCTGATCTTGCAGGTT+AGG 0.359302 3:-7823897 None:intergenic
AATGTTAAAAGCAGCAGTTT+TGG 0.363696 3:-7824018 None:intergenic
TTGAGAATGAGTCAAATTCC+TGG 0.425106 3:+7823757 MsG0380011910.01.T01:CDS
TTTCTACCGAAGTTGTTACT+AGG 0.451684 3:+7824105 MsG0380011910.01.T01:CDS
TGTTCCTAACCTGCAAGATC+AGG 0.452202 3:+7823893 MsG0380011910.01.T01:CDS
TTTCTCTTGAATTAGAGAAC+GGG 0.464750 3:+7823706 MsG0380011910.01.T01:CDS
TACTAGGTTGAGTCACGACC+AGG 0.493934 3:+7824121 MsG0380011910.01.T01:CDS
GAGTTTAATGATTTGGAAAG+TGG 0.498136 3:+7823969 MsG0380011910.01.T01:CDS
AGTATGGAAATCAAGAGTCT+TGG 0.499464 3:+7823856 MsG0380011910.01.T01:CDS
CTTGAATGTTTGGATTATGA+AGG 0.501360 3:+7823833 MsG0380011910.01.T01:CDS
GCTCTCTTTAAGACGTTTCG+TGG 0.504785 3:+7824146 MsG0380011910.01.T01:CDS
TGTAAACAACCAACTTATCA+TGG 0.505148 3:-7823992 None:intergenic
CTTTCTCTTGAATTAGAGAA+CGG 0.526008 3:+7823705 MsG0380011910.01.T01:CDS
CCTCAGCACATCTAACGTCC+AGG 0.551663 3:-7823775 None:intergenic
GGAAAGTGGCCATGATAAGT+TGG 0.562485 3:+7823983 MsG0380011910.01.T01:CDS
TTCAGACGATGACCAACTGC+TGG 0.570657 3:+7823944 MsG0380011910.01.T01:CDS
TGATTACTCAATCTATGGAT+CGG 0.576187 3:+7823617 None:intergenic
GTTAATTGGTATGCAAAGGA+TGG 0.591659 3:+7823660 MsG0380011910.01.T01:CDS
CTGGACGTTAGATGTGCTGA+GGG 0.601700 3:+7823776 MsG0380011910.01.T01:CDS
AGACGATGACCAACTGCTGG+TGG 0.605968 3:+7823947 MsG0380011910.01.T01:CDS
CATTAAACTCCACCAGCAGT+TGG 0.614948 3:-7823956 None:intergenic
CCTGGACGTTAGATGTGCTG+AGG 0.617769 3:+7823775 MsG0380011910.01.T01:CDS
TGCTGTTAATTGGTATGCAA+AGG 0.640600 3:+7823656 MsG0380011910.01.T01:CDS
GCACTACCCAAAATTGTGCA+AGG 0.646683 3:+7824168 MsG0380011910.01.T01:CDS
ACGTCTTAAAGAGAGCGACC+TGG 0.654665 3:-7824139 None:intergenic
ACTCAACCTAGTAACAACTT+CGG 0.694836 3:-7824111 None:intergenic
GGATCGGAAATATTTGTGAG+TGG 0.712383 3:+7823633 MsG0380011910.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAAATCCAAATACAATAATT+TGG - Chr3:7824075-7824094 None:intergenic 20.0%
!! GATTTCCAAATTATTGTATT+TGG + Chr3:7824067-7824086 MsG0380011910.01.T01:CDS 20.0%
!!! AGTTTCAAAACTGTTGTTTT+TGG + Chr3:7824045-7824064 MsG0380011910.01.T01:CDS 25.0%
CTTCGGTAGAAAATAGAATT+TGG - Chr3:7824097-7824116 None:intergenic 30.0%
CTTGAATGTTTGGATTATGA+AGG + Chr3:7823833-7823852 MsG0380011910.01.T01:CDS 30.0%
CTTTCTCTTGAATTAGAGAA+CGG + Chr3:7823705-7823724 MsG0380011910.01.T01:CDS 30.0%
GTGATATGTTCTTGAATGTT+TGG + Chr3:7823823-7823842 MsG0380011910.01.T01:CDS 30.0%
TGTAAACAACCAACTTATCA+TGG - Chr3:7823995-7824014 None:intergenic 30.0%
TTTCTCTTGAATTAGAGAAC+GGG + Chr3:7823706-7823725 MsG0380011910.01.T01:CDS 30.0%
TTTGACTCATTCTCAAAATC+AGG - Chr3:7823753-7823772 None:intergenic 30.0%
! AATGTTAAAAGCAGCAGTTT+TGG - Chr3:7824021-7824040 None:intergenic 30.0%
! GAGTTTAATGATTTGGAAAG+TGG + Chr3:7823969-7823988 MsG0380011910.01.T01:CDS 30.0%
ACTCAACCTAGTAACAACTT+CGG - Chr3:7824114-7824133 None:intergenic 35.0%
AGTATGGAAATCAAGAGTCT+TGG + Chr3:7823856-7823875 MsG0380011910.01.T01:CDS 35.0%
GTTAATTGGTATGCAAAGGA+TGG + Chr3:7823660-7823679 MsG0380011910.01.T01:CDS 35.0%
GTTTGGATTATGAAGGAGTA+TGG + Chr3:7823840-7823859 MsG0380011910.01.T01:CDS 35.0%
TGCTGTTAATTGGTATGCAA+AGG + Chr3:7823656-7823675 MsG0380011910.01.T01:CDS 35.0%
TTGAGAATGAGTCAAATTCC+TGG + Chr3:7823757-7823776 MsG0380011910.01.T01:CDS 35.0%
TTTCTACCGAAGTTGTTACT+AGG + Chr3:7824105-7824124 MsG0380011910.01.T01:CDS 35.0%
AAATCCTGATCTTGCAGGTT+AGG - Chr3:7823900-7823919 None:intergenic 40.0%
CTTCTAAATCCTGATCTTGC+AGG - Chr3:7823905-7823924 None:intergenic 40.0%
GCTGGTGGAGTTTAATGATT+TGG + Chr3:7823962-7823981 MsG0380011910.01.T01:CDS 40.0%
GGATCGGAAATATTTGTGAG+TGG + Chr3:7823633-7823652 MsG0380011910.01.T01:CDS 40.0%
!! TTGTGAGTGGTGCTGTTAAT+TGG + Chr3:7823646-7823665 MsG0380011910.01.T01:CDS 40.0%
CATTAAACTCCACCAGCAGT+TGG - Chr3:7823959-7823978 None:intergenic 45.0%
GCACTACCCAAAATTGTGCA+AGG + Chr3:7824168-7824187 MsG0380011910.01.T01:CDS 45.0%
GGAAAGTGGCCATGATAAGT+TGG + Chr3:7823983-7824002 MsG0380011910.01.T01:CDS 45.0%
TGTTCCTAACCTGCAAGATC+AGG + Chr3:7823893-7823912 MsG0380011910.01.T01:CDS 45.0%
!! GCTCTCTTTAAGACGTTTCG+TGG + Chr3:7824146-7824165 MsG0380011910.01.T01:CDS 45.0%
ACGTCTTAAAGAGAGCGACC+TGG - Chr3:7824142-7824161 None:intergenic 50.0%
CTGGACGTTAGATGTGCTGA+GGG + Chr3:7823776-7823795 MsG0380011910.01.T01:CDS 50.0%
TTCAGACGATGACCAACTGC+TGG + Chr3:7823944-7823963 MsG0380011910.01.T01:CDS 50.0%
! TACTAGGTTGAGTCACGACC+AGG + Chr3:7824121-7824140 MsG0380011910.01.T01:CDS 50.0%
AGACGATGACCAACTGCTGG+TGG + Chr3:7823947-7823966 MsG0380011910.01.T01:CDS 55.0%
CCTCAGCACATCTAACGTCC+AGG - Chr3:7823778-7823797 None:intergenic 55.0%
CCTGGACGTTAGATGTGCTG+AGG + Chr3:7823775-7823794 MsG0380011910.01.T01:CDS 55.0%
Chromosome Type Strat End Strand Name
Chr3 gene 7823630 7824193 7823630 ID=MsG0380011910.01;Name=MsG0380011910.01
Chr3 mRNA 7823630 7824193 7823630 ID=MsG0380011910.01.T01;Parent=MsG0380011910.01;Name=MsG0380011910.01.T01;_AED=0.33;_eAED=0.33;_QI=0|-1|0|1|-1|0|1|0|187
Chr3 exon 7823630 7824193 7823630 ID=MsG0380011910.01.T01:exon:3363;Parent=MsG0380011910.01.T01
Chr3 CDS 7823630 7824193 7823630 ID=MsG0380011910.01.T01:cds;Parent=MsG0380011910.01.T01
Chr3 mRNA 7823828 7824193 7823828 ID=MsG0380011910.01.T02;Parent=MsG0380011910.01;Name=MsG0380011910.01.T02;_AED=0.49;_eAED=0.49;_QI=0|-1|0|1|-1|0|1|0|121
Chr3 exon 7823828 7824193 7823828 ID=MsG0380011910.01.T02:exon:3364;Parent=MsG0380011910.01.T02
Chr3 CDS 7823828 7824193 7823828 ID=MsG0380011910.01.T02:cds;Parent=MsG0380011910.01.T02
Gene Sequence

>MsG0380011910.01.T02

ATGTTCTTGAATGTTTGGATTATGAAGGAGTATGGAAATCAAGAGTCTTGGACTAAATTGTACATTGTTCCTAACCTGCAAGATCAGGATTTAGAAGTCAATAGAGCTTTATATATTTCAGACGATGACCAACTGCTGGTGGAGTTTAATGATTTGGAAAGTGGCCATGATAAGTTGGTTGTTTACAACTCCAAAACTGCTGCTTTTAACATTCTTGAGTTTCAAAACTGTTGTTTTTGGATTTCCAAATTATTGTATTTGGATTTCCAAATTCTATTTTCTACCGAAGTTGTTACTAGGTTGAGTCACGACCAGGTCGCTCTCTTTAAGACGTTTCGTGGCACTACCCAAAATTGTGCAAGGTAG

>MsG0380011910.01.T01

TATGGATCGGAAATATTTGTGAGTGGTGCTGTTAATTGGTATGCAAAGGATGGATCAGATAGTTTGTACTTCATTCTTTCTCTTGAATTAGAGAACGGGTCATATCGAAAGCTTTATCTACCTGATTTTGAGAATGAGTCAAATTCCTGGACGTTAGATGTGCTGAGGGATTGCTTGTGTATCTTTGAAACTAGTGATATGTTCTTGAATGTTTGGATTATGAAGGAGTATGGAAATCAAGAGTCTTGGACTAAATTGTACATTGTTCCTAACCTGCAAGATCAGGATTTAGAAGTCAATAGAGCTTTATATATTTCAGACGATGACCAACTGCTGGTGGAGTTTAATGATTTGGAAAGTGGCCATGATAAGTTGGTTGTTTACAACTCCAAAACTGCTGCTTTTAACATTCTTGAGTTTCAAAACTGTTGTTTTTGGATTTCCAAATTATTGTATTTGGATTTCCAAATTCTATTTTCTACCGAAGTTGTTACTAGGTTGAGTCACGACCAGGTCGCTCTCTTTAAGACGTTTCGTGGCACTACCCAAAATTGTGCAAGGTAG
Protein sequence

>MsG0380011910.01.T02

MFLNVWIMKEYGNQESWTKLYIVPNLQDQDLEVNRALYISDDDQLLVEFNDLESGHDKLVVYNSKTAAFNILEFQNCCFWISKLLYLDFQILFSTEVVTRLSHDQVALFKTFRGTTQNCAR*

>MsG0380011910.01.T01

YGSEIFVSGAVNWYAKDGSDSLYFILSLELENGSYRKLYLPDFENESNSWTLDVLRDCLCIFETSDMFLNVWIMKEYGNQESWTKLYIVPNLQDQDLEVNRALYISDDDQLLVEFNDLESGHDKLVVYNSKTAAFNILEFQNCCFWISKLLYLDFQILFSTEVVTRLSHDQVALFKTFRGTTQNCAR*