Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0380013596.01.T01 | KEH16761.1 | 43.312 | 471 | 200 | 11 | 1 | 434 | 1 | 441 | 1.48E-107 | 338 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0380013596.01.T01 | A0A072THQ1 | 43.312 | 471 | 200 | 11 | 1 | 434 | 1 | 441 | 7.05e-108 | 338 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsG0180005974.01 | MsG0380013596.01 | 0.811580 | 6.520563e-51 | 4.051384e-48 |
MsG0380011759.01 | MsG0380013596.01 | 0.843064 | 1.762634e-58 | 2.725181e-55 |
MsG0380011910.01 | MsG0380013596.01 | 0.822520 | 2.267513e-53 | 1.902443e-50 |
MsG0380013596.01 | MsG0380014153.01 | 0.809528 | 1.810175e-50 | 1.065350e-47 |
MsG0380013596.01 | MsG0380014867.01 | 0.824558 | 7.563937e-54 | 6.723367e-51 |
MsG0380013596.01 | MsG0380014977.01 | 0.800766 | 1.235325e-48 | 5.799922e-46 |
MsG0380013596.01 | MsG0380017820.01 | 0.821511 | 3.883641e-53 | 3.165870e-50 |
MsG0380013596.01 | MsG0380017821.01 | 0.854686 | 1.043302e-61 | 2.349238e-58 |
MsG0380013596.01 | MsG0380017822.01 | 0.861387 | 1.063113e-63 | 3.003256e-60 |
MsG0380013596.01 | MsG0580024621.01 | 0.827286 | 1.701590e-54 | 1.635516e-51 |
MsG0380013596.01 | MsG0580026222.01 | 0.815128 | 1.083202e-51 | 7.404722e-49 |
MsG0380013596.01 | MsG0580027332.01 | 0.846347 | 2.299354e-59 | 3.945980e-56 |
MsG0380013596.01 | MsG0580027687.01 | 0.849469 | 3.170740e-60 | 6.016620e-57 |
MsG0380013596.01 | MsG0580027688.01 | 0.859989 | 2.823240e-63 | 7.600048e-60 |
MsG0380013596.01 | MsG0580029381.01 | 0.804486 | 2.110648e-49 | 1.089579e-46 |
MsG0380013596.01 | MsG0680032801.01 | 0.827430 | 1.571569e-54 | 1.516890e-51 |
MsG0380013596.01 | MsG0680032844.01 | 0.832935 | 7.116095e-56 | 8.072589e-53 |
MsG0380013596.01 | MsG0680033379.01 | 0.809276 | 2.049650e-50 | 1.198245e-47 |
MsG0380013596.01 | MsG0680035828.01 | 0.802504 | 5.435876e-49 | 2.667260e-46 |
MsG0380013596.01 | MsG0680035896.01 | 0.805762 | 1.141221e-49 | 6.088542e-47 |
MsG0380013596.01 | MsG0780036498.01 | 0.823097 | 1.664082e-53 | 1.419158e-50 |
MsG0380013596.01 | MsG0780039282.01 | 0.833473 | 5.226021e-56 | 6.024552e-53 |
MsG0380013596.01 | MsG0880041916.01 | 0.803940 | 2.741844e-49 | 1.395856e-46 |
MsG0380013596.01 | MsG0880044577.01 | 0.800194 | 1.616152e-48 | 7.478600e-46 |
MsG0380013596.01 | MsG0880044644.01 | 0.857530 | 1.533187e-62 | 3.795850e-59 |
MsG0380013596.01 | MsG0880044788.01 | 0.801230 | 9.929452e-49 | 4.717237e-46 |
MsG0280008759.01 | MsG0380013596.01 | 0.825274 | 5.125066e-54 | 4.649727e-51 |
MsG0280009248.01 | MsG0380013596.01 | 0.834703 | 2.571709e-56 | 3.075740e-53 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0380013596.01.T01 | MTR_0098s0100 | 43.312 | 471 | 200 | 11 | 1 | 434 | 1 | 441 | 1.79e-111 | 338 |
MsG0380013596.01.T01 | MTR_0488s0020 | 34.815 | 405 | 173 | 7 | 28 | 398 | 61 | 408 | 2.67e-74 | 241 |
MsG0380013596.01.T01 | MTR_4g035630 | 42.056 | 321 | 102 | 5 | 54 | 307 | 32 | 335 | 1.24e-72 | 232 |
MsG0380013596.01.T01 | MTR_6g049130 | 35.174 | 344 | 132 | 7 | 26 | 331 | 59 | 349 | 1.63e-65 | 214 |
MsG0380013596.01.T01 | MTR_8g104770 | 44.106 | 263 | 113 | 2 | 9 | 237 | 5 | 267 | 1.09e-63 | 207 |
MsG0380013596.01.T01 | MTR_8g104170 | 43.455 | 191 | 77 | 1 | 84 | 243 | 4 | 194 | 7.38e-54 | 185 |
MsG0380013596.01.T01 | MTR_7g006745 | 32.360 | 411 | 181 | 10 | 2 | 355 | 15 | 385 | 5.95e-52 | 180 |
MsG0380013596.01.T01 | MTR_6g045237 | 40.171 | 234 | 112 | 2 | 43 | 248 | 35 | 268 | 6.49e-52 | 182 |
MsG0380013596.01.T01 | MTR_5g037520 | 37.652 | 247 | 120 | 3 | 7 | 221 | 4 | 248 | 4.78e-50 | 176 |
MsG0380013596.01.T01 | MTR_5g046930 | 46.061 | 165 | 58 | 1 | 72 | 205 | 14 | 178 | 1.61e-47 | 161 |
MsG0380013596.01.T01 | MTR_6g042480 | 50.303 | 165 | 60 | 2 | 1 | 165 | 1 | 143 | 1.39e-46 | 162 |
MsG0380013596.01.T01 | MTR_7g111460 | 38.596 | 228 | 113 | 1 | 41 | 241 | 24 | 251 | 1.75e-46 | 170 |
MsG0380013596.01.T01 | MTR_2g036980 | 36.975 | 238 | 122 | 5 | 7 | 239 | 4 | 218 | 5.49e-46 | 164 |
MsG0380013596.01.T01 | MTR_5g047910 | 44.595 | 222 | 99 | 5 | 67 | 281 | 23 | 227 | 4.24e-45 | 158 |
MsG0380013596.01.T01 | MTR_4g045863 | 40.957 | 188 | 67 | 3 | 79 | 235 | 2 | 176 | 3.80e-44 | 159 |
MsG0380013596.01.T01 | MTR_2g438650 | 36.889 | 225 | 109 | 2 | 16 | 213 | 39 | 257 | 3.53e-43 | 157 |
MsG0380013596.01.T01 | MTR_0195s0010 | 36.214 | 243 | 119 | 5 | 5 | 218 | 10 | 245 | 4.20e-43 | 152 |
MsG0380013596.01.T01 | MTR_0195s0020 | 39.896 | 193 | 89 | 1 | 58 | 223 | 58 | 250 | 1.02e-42 | 157 |
MsG0380013596.01.T01 | MTR_7g445700 | 33.898 | 236 | 127 | 2 | 41 | 247 | 30 | 265 | 2.68e-42 | 158 |
MsG0380013596.01.T01 | MTR_4g108010 | 38.674 | 181 | 100 | 2 | 12 | 189 | 4 | 176 | 3.44e-41 | 145 |
MsG0380013596.01.T01 | MTR_4g093740 | 37.313 | 201 | 123 | 2 | 41 | 239 | 26 | 225 | 9.34e-40 | 149 |
MsG0380013596.01.T01 | MTR_4g096760 | 35.021 | 237 | 112 | 4 | 18 | 215 | 9 | 242 | 1.67e-38 | 146 |
MsG0380013596.01.T01 | MTR_3g086820 | 34.434 | 212 | 99 | 2 | 37 | 237 | 8 | 190 | 3.86e-38 | 143 |
MsG0380013596.01.T01 | MTR_5g079060 | 31.013 | 316 | 190 | 9 | 10 | 320 | 2 | 294 | 5.46e-38 | 140 |
MsG0380013596.01.T01 | MTR_0012s0140 | 35.268 | 224 | 111 | 4 | 36 | 229 | 35 | 254 | 2.79e-37 | 143 |
MsG0380013596.01.T01 | MTR_0014s0120 | 38.824 | 170 | 97 | 1 | 70 | 232 | 59 | 228 | 8.66e-37 | 139 |
MsG0380013596.01.T01 | MTR_8g445450 | 37.433 | 187 | 90 | 1 | 61 | 220 | 20 | 206 | 1.31e-36 | 135 |
MsG0380013596.01.T01 | MTR_6g022050 | 35.160 | 219 | 114 | 2 | 26 | 216 | 17 | 235 | 7.32e-35 | 130 |
MsG0380013596.01.T01 | MTR_3g062250 | 30.566 | 265 | 138 | 5 | 48 | 269 | 3 | 264 | 1.49e-32 | 130 |
MsG0380013596.01.T01 | MTR_6g471850 | 33.761 | 234 | 88 | 6 | 41 | 245 | 33 | 228 | 1.50e-30 | 123 |
MsG0380013596.01.T01 | MTR_8g466790 | 30.672 | 238 | 101 | 4 | 15 | 225 | 7 | 207 | 9.29e-30 | 115 |
MsG0380013596.01.T01 | MTR_7g063160 | 37.975 | 158 | 71 | 1 | 85 | 215 | 19 | 176 | 5.36e-29 | 117 |
MsG0380013596.01.T01 | MTR_1g034250 | 36.628 | 172 | 96 | 1 | 18 | 176 | 8 | 179 | 1.64e-27 | 110 |
MsG0380013596.01.T01 | MTR_5g037100 | 45.946 | 111 | 60 | 0 | 57 | 167 | 2 | 112 | 1.52e-26 | 103 |
MsG0380013596.01.T01 | MTR_2g034230 | 45.794 | 107 | 58 | 0 | 42 | 148 | 53 | 159 | 5.31e-25 | 101 |
MsG0380013596.01.T01 | MTR_1g093780 | 29.717 | 212 | 99 | 3 | 34 | 216 | 4 | 194 | 5.96e-25 | 107 |
MsG0380013596.01.T01 | MTR_7g037570 | 47.222 | 108 | 46 | 3 | 13 | 117 | 6 | 105 | 6.59e-25 | 99.0 |
MsG0380013596.01.T01 | MTR_4g060870 | 31.414 | 191 | 87 | 2 | 58 | 248 | 57 | 203 | 1.23e-24 | 105 |
MsG0380013596.01.T01 | MTR_0566s0020 | 38.272 | 162 | 83 | 4 | 2 | 163 | 20 | 164 | 1.93e-24 | 101 |
MsG0380013596.01.T01 | MTR_3g079805 | 31.466 | 232 | 89 | 5 | 39 | 240 | 16 | 207 | 3.05e-24 | 102 |
MsG0380013596.01.T01 | MTR_6g464500 | 53.488 | 86 | 40 | 0 | 41 | 126 | 31 | 116 | 1.28e-23 | 100 |
MsG0380013596.01.T01 | MTR_2g048290 | 33.962 | 159 | 101 | 3 | 69 | 226 | 31 | 186 | 4.69e-23 | 96.7 |
MsG0380013596.01.T01 | MTR_1g040935 | 36.429 | 140 | 62 | 1 | 124 | 236 | 2 | 141 | 4.80e-23 | 100 |
MsG0380013596.01.T01 | MTR_5g065660 | 40.625 | 128 | 60 | 2 | 101 | 218 | 72 | 193 | 6.09e-23 | 97.8 |
MsG0380013596.01.T01 | MTR_3g465060 | 47.872 | 94 | 49 | 0 | 94 | 187 | 66 | 159 | 6.20e-23 | 99.8 |
MsG0380013596.01.T01 | MTR_8g045340 | 32.727 | 165 | 69 | 2 | 80 | 217 | 2 | 151 | 6.53e-23 | 100 |
MsG0380013596.01.T01 | MTR_3g464250 | 35.971 | 139 | 62 | 1 | 92 | 203 | 41 | 179 | 8.21e-23 | 96.7 |
MsG0380013596.01.T01 | MTR_6g043680 | 33.775 | 151 | 87 | 1 | 98 | 235 | 36 | 186 | 9.93e-23 | 97.1 |
MsG0380013596.01.T01 | MTR_1g063810 | 40.164 | 122 | 70 | 3 | 40 | 159 | 42 | 162 | 3.24e-22 | 93.2 |
MsG0380013596.01.T01 | MTR_1g033070 | 42.735 | 117 | 65 | 1 | 39 | 153 | 35 | 151 | 7.83e-22 | 94.0 |
MsG0380013596.01.T01 | MTR_1g032900 | 32.039 | 206 | 101 | 6 | 36 | 239 | 38 | 206 | 8.42e-22 | 98.2 |
MsG0380013596.01.T01 | MTR_4g009745 | 40.708 | 113 | 57 | 2 | 11 | 122 | 109 | 212 | 4.07e-21 | 92.8 |
MsG0380013596.01.T01 | MTR_1g041005 | 35.036 | 137 | 62 | 1 | 124 | 233 | 59 | 195 | 4.71e-21 | 93.6 |
MsG0380013596.01.T01 | MTR_2g074890 | 37.363 | 91 | 57 | 0 | 77 | 167 | 16 | 106 | 5.24e-21 | 95.5 |
MsG0380013596.01.T01 | MTR_1g062320 | 26.371 | 383 | 202 | 12 | 124 | 433 | 3 | 378 | 8.33e-21 | 94.0 |
MsG0380013596.01.T01 | MTR_5g048840 | 30.286 | 175 | 92 | 2 | 41 | 215 | 39 | 183 | 3.78e-20 | 90.9 |
MsG0380013596.01.T01 | MTR_8g063620 | 42.308 | 104 | 59 | 1 | 41 | 143 | 33 | 136 | 4.57e-20 | 86.3 |
MsG0380013596.01.T01 | MTR_1024s0010 | 36.364 | 121 | 50 | 1 | 114 | 207 | 5 | 125 | 5.21e-20 | 87.0 |
MsG0380013596.01.T01 | MTR_3g050340 | 28.877 | 187 | 89 | 2 | 69 | 228 | 42 | 211 | 7.75e-20 | 91.3 |
MsG0380013596.01.T01 | MTR_2g043180 | 40.187 | 107 | 55 | 2 | 21 | 118 | 42 | 148 | 9.56e-20 | 85.9 |
MsG0380013596.01.T01 | MTR_7g013110 | 35.115 | 131 | 85 | 0 | 42 | 172 | 41 | 171 | 3.81e-19 | 89.7 |
MsG0380013596.01.T01 | MTR_8g040870 | 33.333 | 141 | 78 | 2 | 142 | 266 | 37 | 177 | 4.53e-19 | 85.9 |
MsG0380013596.01.T01 | MTR_5g013570 | 43.158 | 95 | 46 | 2 | 155 | 242 | 21 | 114 | 7.36e-18 | 80.1 |
MsG0380013596.01.T01 | MTR_6g076110 | 39.655 | 116 | 70 | 0 | 41 | 156 | 60 | 175 | 1.56e-17 | 81.3 |
MsG0380013596.01.T01 | MTR_8g022850 | 31.579 | 190 | 99 | 5 | 44 | 219 | 10 | 182 | 1.91e-17 | 82.8 |
MsG0380013596.01.T01 | MTR_2g031910 | 31.783 | 129 | 61 | 1 | 117 | 218 | 1 | 129 | 3.03e-17 | 80.9 |
MsG0380013596.01.T01 | MTR_2g013990 | 37.903 | 124 | 70 | 4 | 119 | 235 | 27 | 150 | 3.28e-17 | 83.2 |
MsG0380013596.01.T01 | MTR_1g090997 | 30.714 | 140 | 63 | 2 | 137 | 249 | 1 | 133 | 4.39e-17 | 83.6 |
MsG0380013596.01.T01 | MTR_7g063750 | 47.222 | 72 | 38 | 0 | 75 | 146 | 144 | 215 | 6.54e-17 | 79.7 |
MsG0380013596.01.T01 | MTR_5g064400 | 54.098 | 61 | 28 | 0 | 38 | 98 | 77 | 137 | 1.66e-16 | 77.0 |
MsG0380013596.01.T01 | MTR_0063s0100 | 35.514 | 107 | 69 | 0 | 75 | 181 | 106 | 212 | 3.23e-16 | 79.7 |
MsG0380013596.01.T01 | MTR_4g031410 | 36.364 | 121 | 74 | 2 | 120 | 239 | 7 | 125 | 4.76e-16 | 78.2 |
MsG0380013596.01.T01 | MTR_4g031755 | 36.364 | 121 | 74 | 2 | 120 | 239 | 7 | 125 | 4.76e-16 | 78.2 |
MsG0380013596.01.T01 | MTR_3g071850 | 35.455 | 110 | 69 | 1 | 36 | 143 | 418 | 527 | 6.49e-16 | 80.9 |
MsG0380013596.01.T01 | MTR_3g091430 | 31.383 | 188 | 99 | 4 | 38 | 218 | 9 | 173 | 7.71e-16 | 78.2 |
MsG0380013596.01.T01 | MTR_4g031785 | 35.200 | 125 | 69 | 4 | 120 | 243 | 7 | 120 | 2.15e-15 | 77.8 |
MsG0380013596.01.T01 | MTR_6g016995 | 38.710 | 93 | 57 | 0 | 94 | 186 | 1 | 93 | 4.39e-15 | 71.2 |
MsG0380013596.01.T01 | MTR_1g032820 | 33.613 | 119 | 52 | 1 | 122 | 213 | 1 | 119 | 5.74e-15 | 73.6 |
MsG0380013596.01.T01 | MTR_8g069240 | 36.082 | 97 | 58 | 1 | 67 | 159 | 56 | 152 | 3.84e-14 | 71.2 |
MsG0380013596.01.T01 | MTR_7g053210 | 36.634 | 101 | 53 | 2 | 2 | 102 | 19 | 108 | 1.05e-12 | 64.7 |
MsG0380013596.01.T01 | MTR_5g013810 | 39.823 | 113 | 56 | 5 | 10 | 120 | 5 | 107 | 2.13e-12 | 66.6 |
MsG0380013596.01.T01 | MTR_1g007020 | 30.400 | 125 | 67 | 3 | 122 | 239 | 38 | 149 | 7.44e-12 | 67.4 |
MsG0380013596.01.T01 | MTR_5g067840 | 29.231 | 130 | 65 | 2 | 58 | 187 | 70 | 172 | 1.79e-11 | 63.2 |
MsG0380013596.01.T01 | MTR_6g038330 | 30.275 | 109 | 49 | 1 | 122 | 203 | 1 | 109 | 2.06e-11 | 64.7 |
MsG0380013596.01.T01 | MTR_2g037610 | 46.154 | 65 | 35 | 0 | 42 | 106 | 2 | 66 | 2.16e-11 | 62.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 108 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTGAACAATTTCAAAATTCT+TGG | 0.193415 | 3:+41399212 | None:intergenic |
TTGATCTGCTTGTGACTAAT+TGG | 0.220384 | 3:+41398266 | None:intergenic |
CCAACCTTTGATCTGGTAAA+AGG | 0.238549 | 3:+41398196 | None:intergenic |
CTGACTGACTCCACCGAAAC+TGG | 0.238890 | 3:+41399371 | None:intergenic |
GTTGGTAGCCTCTGCATCTT+TGG | 0.251656 | 3:+41398312 | None:intergenic |
TCTATGCTGGACAGATCTTT+TGG | 0.344488 | 3:-41399030 | MsG0380013596.01.T01:intron |
CAGGTGTGGATTCGTATCTA+TGG | 0.347444 | 3:-41399143 | MsG0380013596.01.T01:CDS |
TCAAAGCCTATGCAAGTTGC+AGG | 0.355079 | 3:-41398679 | MsG0380013596.01.T01:CDS |
GTGACAATTGCTTTCTGAAC+AGG | 0.363868 | 3:+41398394 | None:intergenic |
CCAGCCTCATATTCTTCATC+TGG | 0.367393 | 3:+41399452 | None:intergenic |
AGAGGCCACGGAGGATGAAT+TGG | 0.372142 | 3:-41398422 | MsG0380013596.01.T01:CDS |
ATAATCTTAGTTGAAAGAAC+AGG | 0.383547 | 3:-41398955 | MsG0380013596.01.T01:CDS |
AAGTTTCTAGCTGCCACATC+TGG | 0.387362 | 3:+41398367 | None:intergenic |
AGCAAATGTCTTATGTTGTC+TGG | 0.421300 | 3:+41399559 | None:intergenic |
AACCCTTGATCATCAACATC+AGG | 0.430178 | 3:+41398289 | None:intergenic |
TTTCCATAAAACAGCTAGCT+TGG | 0.438047 | 3:+41399346 | None:intergenic |
AAAAGGTTCAAGCCCAGTTT+CGG | 0.441739 | 3:-41399384 | MsG0380013596.01.T01:CDS |
TGTACCTATTGTAAATGTAC+TGG | 0.445046 | 3:-41398886 | MsG0380013596.01.T01:CDS |
ATGACCAGTACATTTACAAT+AGG | 0.449058 | 3:+41398882 | None:intergenic |
TAGTGTTTCTAAAGAATACT+TGG | 0.450521 | 3:-41398462 | MsG0380013596.01.T01:CDS |
TATGGAAAACACTAGGAAGA+TGG | 0.451384 | 3:-41399331 | MsG0380013596.01.T01:CDS |
GCGTAGTGGCTTGTTGTTGA+AGG | 0.451773 | 3:+41399165 | None:intergenic |
TGAAACCGGTTCTGAATTTG+TGG | 0.452672 | 3:-41398596 | MsG0380013596.01.T01:CDS |
AGATGGGGAGTGACTTCAAT+TGG | 0.453803 | 3:-41399314 | MsG0380013596.01.T01:CDS |
ACACTTCATCGGAAAGGATT+GGG | 0.458469 | 3:+41398169 | None:intergenic |
AACAGGGTATGCGTTCTTTG+TGG | 0.464425 | 3:-41398938 | MsG0380013596.01.T01:CDS |
GTTTCTCCTGCAACTTGCAT+AGG | 0.468155 | 3:+41398673 | None:intergenic |
GATTTAGATGGAGATGGTTG+AGG | 0.468598 | 3:+41399608 | None:intergenic |
TTGAGGACTAGCTTTCTTGT+CGG | 0.468676 | 3:+41398234 | None:intergenic |
TTACAATAGGTACAAAAGTC+TGG | 0.469461 | 3:+41398895 | None:intergenic |
GACTGCAAATACAATTTACA+TGG | 0.469983 | 3:-41399422 | MsG0380013596.01.T01:CDS |
GGGTAAGATCGGTAGGATCT+TGG | 0.470395 | 3:-41399244 | MsG0380013596.01.T01:CDS |
GGGTGCACCAACCTTTGATC+TGG | 0.470493 | 3:+41398189 | None:intergenic |
ATTCTCCACAAATTCAGAAC+CGG | 0.470885 | 3:+41398591 | None:intergenic |
AACACTTCATCGGAAAGGAT+TGG | 0.472458 | 3:+41398168 | None:intergenic |
AACCCTGATGTTGATGATCA+AGG | 0.472802 | 3:-41398292 | MsG0380013596.01.T01:CDS |
CCTGCGCATGTCTTCAATAG+AGG | 0.473152 | 3:+41399265 | None:intergenic |
GGACGCGGGGAAGATTTAGA+TGG | 0.475522 | 3:+41399596 | None:intergenic |
ATGGAAAACACTAGGAAGAT+GGG | 0.487158 | 3:-41399330 | MsG0380013596.01.T01:CDS |
GTGGCTTGTTGTTGAAGGCT+AGG | 0.492513 | 3:+41399170 | None:intergenic |
GCAAGGCCAGGTAACAATGA+TGG | 0.493302 | 3:+41399640 | None:intergenic |
TGTCTTATGTTGTCTGGTGA+TGG | 0.497250 | 3:+41399565 | None:intergenic |
ATTGACTATGAAACTGAAAC+CGG | 0.497633 | 3:-41398610 | MsG0380013596.01.T01:CDS |
GGGTTTGAGTGGTGGTGGAA+CGG | 0.500415 | 3:+41399661 | None:intergenic |
CCGTGGCCTCTTTGTCTGCA+AGG | 0.504095 | 3:+41398434 | None:intergenic |
TTGGACACTGAAGCTTCAGC+AGG | 0.504451 | 3:+41398331 | None:intergenic |
ATCAGACTCACCTTTACATC+AGG | 0.506511 | 3:-41398740 | MsG0380013596.01.T01:intron |
ACCCTGATGTTGATGATCAA+GGG | 0.509910 | 3:-41398291 | MsG0380013596.01.T01:CDS |
TTCACATCATCCTGATGTAA+AGG | 0.511957 | 3:+41398730 | None:intergenic |
AGATGTGGCAGCTAGAAACT+TGG | 0.521017 | 3:-41398365 | MsG0380013596.01.T01:CDS |
TGGTGGTGGAACGGTGGTCA+TGG | 0.522751 | 3:+41399670 | None:intergenic |
GCTTCCAAAACCCTATCGTA+AGG | 0.523306 | 3:-41399498 | MsG0380013596.01.T01:CDS |
GATCCCAGATGAAGAATATG+AGG | 0.525642 | 3:-41399456 | MsG0380013596.01.T01:CDS |
TATTCACTGAGGAAGAGAAC+AGG | 0.527185 | 3:-41398642 | MsG0380013596.01.T01:CDS |
AGGTGTGGATTCGTATCTAT+GGG | 0.527291 | 3:-41399142 | MsG0380013596.01.T01:CDS |
TGAATCAGAGGTAAGTGAGA+AGG | 0.536664 | 3:-41398518 | MsG0380013596.01.T01:CDS |
CAAGTTAACATGGAGAAAGA+TGG | 0.537411 | 3:-41398565 | MsG0380013596.01.T01:CDS |
ACAATGATGGGTTTGAGTGG+TGG | 0.543680 | 3:+41399653 | None:intergenic |
AGGTGATTGAAGGCAAGGCC+AGG | 0.546171 | 3:+41399628 | None:intergenic |
CAAGGCCAGGTAACAATGAT+GGG | 0.555818 | 3:+41399641 | None:intergenic |
CCTCTATTGAAGACATGCGC+AGG | 0.557166 | 3:-41399265 | MsG0380013596.01.T01:CDS |
TCGTATCTATGGGCTTGCAC+AGG | 0.560034 | 3:-41399132 | MsG0380013596.01.T01:CDS |
CACAAGCAGATCAACAAAGA+AGG | 0.561301 | 3:-41398257 | MsG0380013596.01.T01:CDS |
ATGCGCAGGGTAAGATCGGT+AGG | 0.562114 | 3:-41399251 | MsG0380013596.01.T01:CDS |
GAGATGGTTGAGGTGATTGA+AGG | 0.562356 | 3:+41399618 | None:intergenic |
ATTCATTACATTCCTCCGCA+TGG | 0.566038 | 3:+41398536 | None:intergenic |
TGACTGACTCCACCGAAACT+GGG | 0.566432 | 3:+41399372 | None:intergenic |
GGTTGAGGTGATTGAAGGCA+AGG | 0.568461 | 3:+41399623 | None:intergenic |
AGGTTCAAGCCCAGTTTCGG+TGG | 0.571668 | 3:-41399381 | MsG0380013596.01.T01:CDS |
GGGGAAGATTTAGATGGAGA+TGG | 0.572276 | 3:+41399602 | None:intergenic |
CCAGATGAAGAATATGAGGC+TGG | 0.578581 | 3:-41399452 | MsG0380013596.01.T01:CDS |
TCAAACCCATCATTGTTACC+TGG | 0.581273 | 3:-41399646 | MsG0380013596.01.T01:CDS |
AGACATGCGCAGGGTAAGAT+CGG | 0.582055 | 3:-41399255 | MsG0380013596.01.T01:CDS |
ATCAGAGGTAAGTGAGAAGG+AGG | 0.582346 | 3:-41398515 | MsG0380013596.01.T01:CDS |
CTTCCAAAACCCTATCGTAA+GGG | 0.583977 | 3:-41399497 | MsG0380013596.01.T01:CDS |
ATGATGGGTTTGAGTGGTGG+TGG | 0.586558 | 3:+41399656 | None:intergenic |
TTCCAAAACCCTATCGTAAG+GGG | 0.589260 | 3:-41399496 | MsG0380013596.01.T01:CDS |
CAGCCTCATATTCTTCATCT+GGG | 0.589739 | 3:+41399453 | None:intergenic |
ACATCAGGATGATGTGAACC+TGG | 0.593748 | 3:-41398725 | MsG0380013596.01.T01:CDS |
GGCTGACCTTGCAGACAAAG+AGG | 0.595421 | 3:-41398440 | MsG0380013596.01.T01:CDS |
AACAAGCCACTACGCAGGTG+TGG | 0.600458 | 3:-41399157 | MsG0380013596.01.T01:CDS |
AGTGTTTCTAAAGAATACTT+GGG | 0.601409 | 3:-41398461 | MsG0380013596.01.T01:CDS |
TTGATCATCAACATCAGGGT+TGG | 0.603284 | 3:+41398294 | None:intergenic |
GTGATGGTTGTGAAAGGACG+CGG | 0.607647 | 3:+41399581 | None:intergenic |
TTTCTAGCTGCCACATCTGG+AGG | 0.609765 | 3:+41398370 | None:intergenic |
AATTGTCACTCCTCCAGATG+TGG | 0.610787 | 3:-41398380 | MsG0380013596.01.T01:CDS |
CCTTGCAGACAAAGAGGCCA+CGG | 0.613879 | 3:-41398434 | MsG0380013596.01.T01:CDS |
TTCAGTGTCCAAAGATGCAG+AGG | 0.614721 | 3:-41398320 | MsG0380013596.01.T01:CDS |
CTCTATTGAAGACATGCGCA+GGG | 0.615581 | 3:-41399264 | MsG0380013596.01.T01:CDS |
GTATAAACACTTCATCGGAA+AGG | 0.622566 | 3:+41398163 | None:intergenic |
TGATGGTTGTGAAAGGACGC+GGG | 0.624718 | 3:+41399582 | None:intergenic |
TTTGAGTGGTGGTGGAACGG+TGG | 0.625105 | 3:+41399664 | None:intergenic |
TGGAAAACACTAGGAAGATG+GGG | 0.634150 | 3:-41399329 | MsG0380013596.01.T01:CDS |
ACCCTTGATCATCAACATCA+GGG | 0.636268 | 3:+41398290 | None:intergenic |
GGAGAATACTCAAGTTAACA+TGG | 0.642196 | 3:-41398575 | MsG0380013596.01.T01:CDS |
GTGGCAGCTAGAAACTTGGA+TGG | 0.646795 | 3:-41398361 | MsG0380013596.01.T01:CDS |
GGAGGAATGTAATGAATCAG+AGG | 0.649823 | 3:-41398530 | MsG0380013596.01.T01:CDS |
TAATCTTAGTTGAAAGAACA+GGG | 0.664911 | 3:-41398954 | MsG0380013596.01.T01:CDS |
ACGAATCCACACCTGCGTAG+TGG | 0.668238 | 3:+41399151 | None:intergenic |
AATTTCCAATTCATCCTCCG+TGG | 0.677026 | 3:+41398417 | None:intergenic |
TCAACAACAAGCCACTACGC+AGG | 0.677643 | 3:-41399162 | MsG0380013596.01.T01:CDS |
TCCAAAACCCTATCGTAAGG+GGG | 0.682032 | 3:-41399495 | MsG0380013596.01.T01:CDS |
TGTCTGGTGATGGTTGTGAA+AGG | 0.689728 | 3:+41399575 | None:intergenic |
AGATGGTTCAGACCATGCGG+AGG | 0.703279 | 3:-41398548 | MsG0380013596.01.T01:CDS |
GATGGTTGTGAAAGGACGCG+GGG | 0.703682 | 3:+41399583 | None:intergenic |
GAAAGATGGTTCAGACCATG+CGG | 0.704911 | 3:-41398551 | MsG0380013596.01.T01:CDS |
GTAACAATGATGGGTTTGAG+TGG | 0.707687 | 3:+41399650 | None:intergenic |
TGCAGACAAAGAGGCCACGG+AGG | 0.714134 | 3:-41398431 | MsG0380013596.01.T01:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATTACTTTGATATTTGTAAA+AGG | - | Chr3:41398981-41399000 | MsG0380013596.01.T01:CDS | 15.0% |
!!! | GGCAAAATTATTTTATCAAA+AGG | - | Chr3:41398441-41398460 | MsG0380013596.01.T01:CDS | 20.0% |
! | AAATTATTTGCCATAGCAAA+TGG | - | Chr3:41398749-41398768 | MsG0380013596.01.T01:intron | 25.0% |
! | ACTTTGATATTTGTAAAAGG+AGG | - | Chr3:41398984-41399003 | MsG0380013596.01.T01:CDS | 25.0% |
! | ATAATCTTAGTTGAAAGAAC+AGG | - | Chr3:41398887-41398906 | MsG0380013596.01.T01:CDS | 25.0% |
! | GTGAACAATTTCAAAATTCT+TGG | + | Chr3:41398633-41398652 | None:intergenic | 25.0% |
! | TAATCTTAGTTGAAAGAACA+GGG | - | Chr3:41398888-41398907 | MsG0380013596.01.T01:CDS | 25.0% |
!! | AGTGTTTCTAAAGAATACTT+GGG | - | Chr3:41399381-41399400 | MsG0380013596.01.T01:CDS | 25.0% |
!! | CATCATTTATTTCATTTTCC+AGG | + | Chr3:41399138-41399157 | None:intergenic | 25.0% |
!! | TAGTGTTTCTAAAGAATACT+TGG | - | Chr3:41399380-41399399 | MsG0380013596.01.T01:CDS | 25.0% |
!!! | GAATTTTGAAATTGTTCACA+TGG | - | Chr3:41398634-41398653 | MsG0380013596.01.T01:CDS | 25.0% |
AACCTCAAAAATATTCACTG+AGG | - | Chr3:41399189-41399208 | MsG0380013596.01.T01:CDS | 30.0% | |
AAGAAAATGGAGACACAAAA+GGG | - | Chr3:41399016-41399035 | MsG0380013596.01.T01:CDS | 30.0% | |
ATGACCAGTACATTTACAAT+AGG | + | Chr3:41398963-41398982 | None:intergenic | 30.0% | |
ATTGACTATGAAACTGAAAC+CGG | - | Chr3:41399232-41399251 | MsG0380013596.01.T01:CDS | 30.0% | |
GACTGCAAATACAATTTACA+TGG | - | Chr3:41398420-41398439 | MsG0380013596.01.T01:CDS | 30.0% | |
GTGATATTATCAGTGCATAT+CGG | + | Chr3:41398785-41398804 | None:intergenic | 30.0% | |
TCTGTTCAATCTTCTTCTAT+TGG | + | Chr3:41399042-41399061 | None:intergenic | 30.0% | |
TGTACCTATTGTAAATGTAC+TGG | - | Chr3:41398956-41398975 | MsG0380013596.01.T01:CDS | 30.0% | |
TTACAATAGGTACAAAAGTC+TGG | + | Chr3:41398950-41398969 | None:intergenic | 30.0% | |
! | ATATGCACTGATAATATCAC+TGG | - | Chr3:41398785-41398804 | MsG0380013596.01.T01:intron | 30.0% |
!! | TTCCTCAGTGAATATTTTTG+AGG | + | Chr3:41399194-41399213 | None:intergenic | 30.0% |
!!! | GGCTTTGTTTTTAATCTTTG+AGG | + | Chr3:41399628-41399647 | None:intergenic | 30.0% |
AGCAAATGTCTTATGTTGTC+TGG | + | Chr3:41398286-41398305 | None:intergenic | 35.0% | |
ATGGAAAACACTAGGAAGAT+GGG | - | Chr3:41398512-41398531 | MsG0380013596.01.T01:CDS | 35.0% | |
ATTCTCCACAAATTCAGAAC+CGG | + | Chr3:41399254-41399273 | None:intergenic | 35.0% | |
CAAGTTAACATGGAGAAAGA+TGG | - | Chr3:41399277-41399296 | MsG0380013596.01.T01:CDS | 35.0% | |
GAAGAAAATGGAGACACAAA+AGG | - | Chr3:41399015-41399034 | MsG0380013596.01.T01:CDS | 35.0% | |
GACTTACAAGCAGAAAGTTA+AGG | - | Chr3:41399060-41399079 | MsG0380013596.01.T01:intron | 35.0% | |
GGAGAATACTCAAGTTAACA+TGG | - | Chr3:41399267-41399286 | MsG0380013596.01.T01:CDS | 35.0% | |
TATGGAAAACACTAGGAAGA+TGG | - | Chr3:41398511-41398530 | MsG0380013596.01.T01:CDS | 35.0% | |
TCTGATACATTCATCACTTC+AGG | + | Chr3:41399088-41399107 | None:intergenic | 35.0% | |
TTCACATCATCCTGATGTAA+AGG | + | Chr3:41399115-41399134 | None:intergenic | 35.0% | |
TTGATCTGCTTGTGACTAAT+TGG | + | Chr3:41399579-41399598 | None:intergenic | 35.0% | |
TTTCCATAAAACAGCTAGCT+TGG | + | Chr3:41398499-41398518 | None:intergenic | 35.0% | |
! | AAAGCCTTTTACCAGATCAA+AGG | - | Chr3:41399642-41399661 | MsG0380013596.01.T01:CDS | 35.0% |
!! | GCTGTTTTATGGAAAACACT+AGG | - | Chr3:41398504-41398523 | MsG0380013596.01.T01:CDS | 35.0% |
AAAAGGTTCAAGCCCAGTTT+CGG | - | Chr3:41398458-41398477 | MsG0380013596.01.T01:CDS | 40.0% | |
AACCCTTGATCATCAACATC+AGG | + | Chr3:41399556-41399575 | None:intergenic | 40.0% | |
AATTTCCAATTCATCCTCCG+TGG | + | Chr3:41399428-41399447 | None:intergenic | 40.0% | |
ACCCTTGATCATCAACATCA+GGG | + | Chr3:41399555-41399574 | None:intergenic | 40.0% | |
AGGTGTGGATTCGTATCTAT+GGG | - | Chr3:41398700-41398719 | MsG0380013596.01.T01:CDS | 40.0% | |
ATCAGACTCACCTTTACATC+AGG | - | Chr3:41399102-41399121 | MsG0380013596.01.T01:intron | 40.0% | |
ATTCATTACATTCCTCCGCA+TGG | + | Chr3:41399309-41399328 | None:intergenic | 40.0% | |
CACAAGCAGATCAACAAAGA+AGG | - | Chr3:41399585-41399604 | MsG0380013596.01.T01:CDS | 40.0% | |
CAGCCTCATATTCTTCATCT+GGG | + | Chr3:41398392-41398411 | None:intergenic | 40.0% | |
CCAACCTTTGATCTGGTAAA+AGG | + | Chr3:41399649-41399668 | None:intergenic | 40.0% | |
CTATTATCCCCCTTACGATA+GGG | + | Chr3:41398357-41398376 | None:intergenic | 40.0% | |
CTTCCAAAACCCTATCGTAA+GGG | - | Chr3:41398345-41398364 | MsG0380013596.01.T01:CDS | 40.0% | |
GATCCCAGATGAAGAATATG+AGG | - | Chr3:41398386-41398405 | MsG0380013596.01.T01:CDS | 40.0% | |
GATTTAGATGGAGATGGTTG+AGG | + | Chr3:41398237-41398256 | None:intergenic | 40.0% | |
GGAGGAATGTAATGAATCAG+AGG | - | Chr3:41399312-41399331 | MsG0380013596.01.T01:CDS | 40.0% | |
GTGACAATTGCTTTCTGAAC+AGG | + | Chr3:41399451-41399470 | None:intergenic | 40.0% | |
TATCACTGGTAAGTCTATGC+TGG | - | Chr3:41398799-41398818 | MsG0380013596.01.T01:intron | 40.0% | |
TATTCACTGAGGAAGAGAAC+AGG | - | Chr3:41399200-41399219 | MsG0380013596.01.T01:CDS | 40.0% | |
TCAAACCCATCATTGTTACC+TGG | - | Chr3:41398196-41398215 | MsG0380013596.01.T01:CDS | 40.0% | |
TCTATTATCCCCCTTACGAT+AGG | + | Chr3:41398358-41398377 | None:intergenic | 40.0% | |
TGAATCAGAGGTAAGTGAGA+AGG | - | Chr3:41399324-41399343 | MsG0380013596.01.T01:CDS | 40.0% | |
TGGAAAACACTAGGAAGATG+GGG | - | Chr3:41398513-41398532 | MsG0380013596.01.T01:CDS | 40.0% | |
TGTCTTATGTTGTCTGGTGA+TGG | + | Chr3:41398280-41398299 | None:intergenic | 40.0% | |
TTCCAAAACCCTATCGTAAG+GGG | - | Chr3:41398346-41398365 | MsG0380013596.01.T01:CDS | 40.0% | |
TTGATCATCAACATCAGGGT+TGG | + | Chr3:41399551-41399570 | None:intergenic | 40.0% | |
TTTGCCATAGCAAATGGAGT+AGG | - | Chr3:41398755-41398774 | MsG0380013596.01.T01:intron | 40.0% | |
! | CCTTTTACCAGATCAAAGGT+TGG | - | Chr3:41399646-41399665 | MsG0380013596.01.T01:CDS | 40.0% |
! | GATCTTTTGGTCACTATGCT+AGG | - | Chr3:41398825-41398844 | MsG0380013596.01.T01:intron | 40.0% |
! | TCTATGCTGGACAGATCTTT+TGG | - | Chr3:41398812-41398831 | MsG0380013596.01.T01:intron | 40.0% |
! | TGTTCCTACTCCATTTGCTA+TGG | + | Chr3:41398762-41398781 | None:intergenic | 40.0% |
!! | AACCCTGATGTTGATGATCA+AGG | - | Chr3:41399550-41399569 | MsG0380013596.01.T01:CDS | 40.0% |
!! | ACCCTGATGTTGATGATCAA+GGG | - | Chr3:41399551-41399570 | MsG0380013596.01.T01:CDS | 40.0% |
!! | GATCCAAGCTAGCTGTTTTA+TGG | - | Chr3:41398493-41398512 | MsG0380013596.01.T01:CDS | 40.0% |
!! | GTAACAATGATGGGTTTGAG+TGG | + | Chr3:41398195-41398214 | None:intergenic | 40.0% |
!! | TGAAACCGGTTCTGAATTTG+TGG | - | Chr3:41399246-41399265 | MsG0380013596.01.T01:CDS | 40.0% |
!! | TTGAGGACTAGCTTTCTTGT+CGG | + | Chr3:41399611-41399630 | None:intergenic | 40.0% |
AACAGGGTATGCGTTCTTTG+TGG | - | Chr3:41398904-41398923 | MsG0380013596.01.T01:CDS | 45.0% | |
AATTGTCACTCCTCCAGATG+TGG | - | Chr3:41399462-41399481 | MsG0380013596.01.T01:CDS | 45.0% | |
ACATCAGGATGATGTGAACC+TGG | - | Chr3:41399117-41399136 | MsG0380013596.01.T01:intron | 45.0% | |
AGATGGGGAGTGACTTCAAT+TGG | - | Chr3:41398528-41398547 | MsG0380013596.01.T01:CDS | 45.0% | |
AGATGTGGCAGCTAGAAACT+TGG | - | Chr3:41399477-41399496 | MsG0380013596.01.T01:CDS | 45.0% | |
ATCAGAGGTAAGTGAGAAGG+AGG | - | Chr3:41399327-41399346 | MsG0380013596.01.T01:CDS | 45.0% | |
CAAGGCCAGGTAACAATGAT+GGG | + | Chr3:41398204-41398223 | None:intergenic | 45.0% | |
CAGGTGTGGATTCGTATCTA+TGG | - | Chr3:41398699-41398718 | MsG0380013596.01.T01:CDS | 45.0% | |
CCAGATGAAGAATATGAGGC+TGG | - | Chr3:41398390-41398409 | MsG0380013596.01.T01:CDS | 45.0% | |
CCAGCCTCATATTCTTCATC+TGG | + | Chr3:41398393-41398412 | None:intergenic | 45.0% | |
CTCTATTGAAGACATGCGCA+GGG | - | Chr3:41398578-41398597 | MsG0380013596.01.T01:CDS | 45.0% | |
GAAAGATGGTTCAGACCATG+CGG | - | Chr3:41399291-41399310 | MsG0380013596.01.T01:CDS | 45.0% | |
GAGATGGTTGAGGTGATTGA+AGG | + | Chr3:41398227-41398246 | None:intergenic | 45.0% | |
GCTTCCAAAACCCTATCGTA+AGG | - | Chr3:41398344-41398363 | MsG0380013596.01.T01:CDS | 45.0% | |
GGGGAAGATTTAGATGGAGA+TGG | + | Chr3:41398243-41398262 | None:intergenic | 45.0% | |
GTTTCTCCTGCAACTTGCAT+AGG | + | Chr3:41399172-41399191 | None:intergenic | 45.0% | |
TCAAAGCCTATGCAAGTTGC+AGG | - | Chr3:41399163-41399182 | MsG0380013596.01.T01:CDS | 45.0% | |
TCCAAAACCCTATCGTAAGG+GGG | - | Chr3:41398347-41398366 | MsG0380013596.01.T01:CDS | 45.0% | |
TTCAGTGTCCAAAGATGCAG+AGG | - | Chr3:41399522-41399541 | MsG0380013596.01.T01:CDS | 45.0% | |
! | GTCTCCATTTTCTTCTCTGC+TGG | + | Chr3:41399010-41399029 | None:intergenic | 45.0% |
!! | AAGTTTCTAGCTGCCACATC+TGG | + | Chr3:41399478-41399497 | None:intergenic | 45.0% |
!! | ACAATGATGGGTTTGAGTGG+TGG | + | Chr3:41398192-41398211 | None:intergenic | 45.0% |
!! | TGTCTGGTGATGGTTGTGAA+AGG | + | Chr3:41398270-41398289 | None:intergenic | 45.0% |
!!! | GTTTTGGAAGCTGGCTCAAT+GGG | + | Chr3:41398335-41398354 | None:intergenic | 45.0% |
!!! | TACGATAGGGTTTTGGAAGC+TGG | + | Chr3:41398344-41398363 | None:intergenic | 45.0% |
AGACATGCGCAGGGTAAGAT+CGG | - | Chr3:41398587-41398606 | MsG0380013596.01.T01:CDS | 50.0% | |
CCTCTATTGAAGACATGCGC+AGG | - | Chr3:41398577-41398596 | MsG0380013596.01.T01:CDS | 50.0% | |
CCTGCGCATGTCTTCAATAG+AGG | + | Chr3:41398580-41398599 | None:intergenic | 50.0% | |
GAGGCCAGCAGAGAAGAAAA+TGG | - | Chr3:41399003-41399022 | MsG0380013596.01.T01:CDS | 50.0% | |
GCAAGGCCAGGTAACAATGA+TGG | + | Chr3:41398205-41398224 | None:intergenic | 50.0% | |
GGGTAAGATCGGTAGGATCT+TGG | - | Chr3:41398598-41398617 | MsG0380013596.01.T01:CDS | 50.0% | |
GGTTGAGGTGATTGAAGGCA+AGG | + | Chr3:41398222-41398241 | None:intergenic | 50.0% | |
GTGATGGTTGTGAAAGGACG+CGG | + | Chr3:41398264-41398283 | None:intergenic | 50.0% | |
GTGGCAGCTAGAAACTTGGA+TGG | - | Chr3:41399481-41399500 | MsG0380013596.01.T01:CDS | 50.0% | |
TCAACAACAAGCCACTACGC+AGG | - | Chr3:41398680-41398699 | MsG0380013596.01.T01:CDS | 50.0% | |
TCGTATCTATGGGCTTGCAC+AGG | - | Chr3:41398710-41398729 | MsG0380013596.01.T01:CDS | 50.0% | |
TGATGGTTGTGAAAGGACGC+GGG | + | Chr3:41398263-41398282 | None:intergenic | 50.0% | |
TTGGACACTGAAGCTTCAGC+AGG | + | Chr3:41399514-41399533 | None:intergenic | 50.0% | |
! | ATGGGCTTGCACAGGAGTAT+TGG | - | Chr3:41398718-41398737 | MsG0380013596.01.T01:CDS | 50.0% |
! | TCCCCCTTACGATAGGGTTT+TGG | + | Chr3:41398351-41398370 | None:intergenic | 50.0% |
! | TGACTGACTCCACCGAAACT+GGG | + | Chr3:41398473-41398492 | None:intergenic | 50.0% |
!! | ATGATGGGTTTGAGTGGTGG+TGG | + | Chr3:41398189-41398208 | None:intergenic | 50.0% |
!! | GCGTAGTGGCTTGTTGTTGA+AGG | + | Chr3:41398680-41398699 | None:intergenic | 50.0% |
!! | GTGGCTTGTTGTTGAAGGCT+AGG | + | Chr3:41398675-41398694 | None:intergenic | 50.0% |
!! | GTTGGTAGCCTCTGCATCTT+TGG | + | Chr3:41399533-41399552 | None:intergenic | 50.0% |
!! | TTTCTAGCTGCCACATCTGG+AGG | + | Chr3:41399475-41399494 | None:intergenic | 50.0% |
!!! | GGTTTTGGAAGCTGGCTCAA+TGG | + | Chr3:41398336-41398355 | None:intergenic | 50.0% |
AACAAGCCACTACGCAGGTG+TGG | - | Chr3:41398685-41398704 | MsG0380013596.01.T01:CDS | 55.0% | |
ACGAATCCACACCTGCGTAG+TGG | + | Chr3:41398694-41398713 | None:intergenic | 55.0% | |
AGAGGCCACGGAGGATGAAT+TGG | - | Chr3:41399420-41399439 | MsG0380013596.01.T01:CDS | 55.0% | |
AGATGGTTCAGACCATGCGG+AGG | - | Chr3:41399294-41399313 | MsG0380013596.01.T01:CDS | 55.0% | |
AGGTGATTGAAGGCAAGGCC+AGG | + | Chr3:41398217-41398236 | None:intergenic | 55.0% | |
AGGTTCAAGCCCAGTTTCGG+TGG | - | Chr3:41398461-41398480 | MsG0380013596.01.T01:CDS | 55.0% | |
ATGCGCAGGGTAAGATCGGT+AGG | - | Chr3:41398591-41398610 | MsG0380013596.01.T01:CDS | 55.0% | |
CCTTGCAGACAAAGAGGCCA+CGG | - | Chr3:41399408-41399427 | MsG0380013596.01.T01:CDS | 55.0% | |
GATGGTTGTGAAAGGACGCG+GGG | + | Chr3:41398262-41398281 | None:intergenic | 55.0% | |
GGACGCGGGGAAGATTTAGA+TGG | + | Chr3:41398249-41398268 | None:intergenic | 55.0% | |
GGCTGACCTTGCAGACAAAG+AGG | - | Chr3:41399402-41399421 | MsG0380013596.01.T01:CDS | 55.0% | |
GGGTGCACCAACCTTTGATC+TGG | + | Chr3:41399656-41399675 | None:intergenic | 55.0% | |
! | CTGACTGACTCCACCGAAAC+TGG | + | Chr3:41398474-41398493 | None:intergenic | 55.0% |
!! | GGCTTGCACAGGAGTATTGG+AGG | - | Chr3:41398721-41398740 | MsG0380013596.01.T01:CDS | 55.0% |
!! | GGGTTTGAGTGGTGGTGGAA+CGG | + | Chr3:41398184-41398203 | None:intergenic | 55.0% |
!! | TTTGAGTGGTGGTGGAACGG+TGG | + | Chr3:41398181-41398200 | None:intergenic | 55.0% |
CCGTGGCCTCTTTGTCTGCA+AGG | + | Chr3:41399411-41399430 | None:intergenic | 60.0% | |
TGCAGACAAAGAGGCCACGG+AGG | - | Chr3:41399411-41399430 | MsG0380013596.01.T01:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr3 | gene | 41398174 | 41399690 | 41398174 | ID=MsG0380013596.01;Name=MsG0380013596.01 |
Chr3 | mRNA | 41398174 | 41399690 | 41398174 | ID=MsG0380013596.01.T01;Parent=MsG0380013596.01;Name=MsG0380013596.01.T01;_AED=0.47;_eAED=0.47;_QI=0|0|0|1|1|1|3|0|437 |
Chr3 | exon | 41399131 | 41399690 | 41399131 | ID=MsG0380013596.01.T01:exon:1652;Parent=MsG0380013596.01.T01 |
Chr3 | exon | 41398869 | 41399038 | 41398869 | ID=MsG0380013596.01.T01:exon:1651;Parent=MsG0380013596.01.T01 |
Chr3 | exon | 41398174 | 41398757 | 41398174 | ID=MsG0380013596.01.T01:exon:1650;Parent=MsG0380013596.01.T01 |
Chr3 | CDS | 41399131 | 41399690 | 41399131 | ID=MsG0380013596.01.T01:cds;Parent=MsG0380013596.01.T01 |
Chr3 | CDS | 41398869 | 41399038 | 41398869 | ID=MsG0380013596.01.T01:cds;Parent=MsG0380013596.01.T01 |
Chr3 | CDS | 41398174 | 41398757 | 41398174 | ID=MsG0380013596.01.T01:cds;Parent=MsG0380013596.01.T01 |
Gene Sequence |
Protein sequence |