AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380013596.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380013596.01.T01 MTR_0098s0100 43.312 471 200 11 1 434 1 441 1.79e-111 338
MsG0380013596.01.T01 MTR_0488s0020 34.815 405 173 7 28 398 61 408 2.67e-74 241
MsG0380013596.01.T01 MTR_4g035630 42.056 321 102 5 54 307 32 335 1.24e-72 232
MsG0380013596.01.T01 MTR_6g049130 35.174 344 132 7 26 331 59 349 1.63e-65 214
MsG0380013596.01.T01 MTR_8g104770 44.106 263 113 2 9 237 5 267 1.09e-63 207
MsG0380013596.01.T01 MTR_8g104170 43.455 191 77 1 84 243 4 194 7.38e-54 185
MsG0380013596.01.T01 MTR_7g006745 32.360 411 181 10 2 355 15 385 5.95e-52 180
MsG0380013596.01.T01 MTR_6g045237 40.171 234 112 2 43 248 35 268 6.49e-52 182
MsG0380013596.01.T01 MTR_5g037520 37.652 247 120 3 7 221 4 248 4.78e-50 176
MsG0380013596.01.T01 MTR_5g046930 46.061 165 58 1 72 205 14 178 1.61e-47 161
MsG0380013596.01.T01 MTR_6g042480 50.303 165 60 2 1 165 1 143 1.39e-46 162
MsG0380013596.01.T01 MTR_7g111460 38.596 228 113 1 41 241 24 251 1.75e-46 170
MsG0380013596.01.T01 MTR_2g036980 36.975 238 122 5 7 239 4 218 5.49e-46 164
MsG0380013596.01.T01 MTR_5g047910 44.595 222 99 5 67 281 23 227 4.24e-45 158
MsG0380013596.01.T01 MTR_4g045863 40.957 188 67 3 79 235 2 176 3.80e-44 159
MsG0380013596.01.T01 MTR_2g438650 36.889 225 109 2 16 213 39 257 3.53e-43 157
MsG0380013596.01.T01 MTR_0195s0010 36.214 243 119 5 5 218 10 245 4.20e-43 152
MsG0380013596.01.T01 MTR_0195s0020 39.896 193 89 1 58 223 58 250 1.02e-42 157
MsG0380013596.01.T01 MTR_7g445700 33.898 236 127 2 41 247 30 265 2.68e-42 158
MsG0380013596.01.T01 MTR_4g108010 38.674 181 100 2 12 189 4 176 3.44e-41 145
MsG0380013596.01.T01 MTR_4g093740 37.313 201 123 2 41 239 26 225 9.34e-40 149
MsG0380013596.01.T01 MTR_4g096760 35.021 237 112 4 18 215 9 242 1.67e-38 146
MsG0380013596.01.T01 MTR_3g086820 34.434 212 99 2 37 237 8 190 3.86e-38 143
MsG0380013596.01.T01 MTR_5g079060 31.013 316 190 9 10 320 2 294 5.46e-38 140
MsG0380013596.01.T01 MTR_0012s0140 35.268 224 111 4 36 229 35 254 2.79e-37 143
MsG0380013596.01.T01 MTR_0014s0120 38.824 170 97 1 70 232 59 228 8.66e-37 139
MsG0380013596.01.T01 MTR_8g445450 37.433 187 90 1 61 220 20 206 1.31e-36 135
MsG0380013596.01.T01 MTR_6g022050 35.160 219 114 2 26 216 17 235 7.32e-35 130
MsG0380013596.01.T01 MTR_3g062250 30.566 265 138 5 48 269 3 264 1.49e-32 130
MsG0380013596.01.T01 MTR_6g471850 33.761 234 88 6 41 245 33 228 1.50e-30 123
MsG0380013596.01.T01 MTR_8g466790 30.672 238 101 4 15 225 7 207 9.29e-30 115
MsG0380013596.01.T01 MTR_7g063160 37.975 158 71 1 85 215 19 176 5.36e-29 117
MsG0380013596.01.T01 MTR_1g034250 36.628 172 96 1 18 176 8 179 1.64e-27 110
MsG0380013596.01.T01 MTR_5g037100 45.946 111 60 0 57 167 2 112 1.52e-26 103
MsG0380013596.01.T01 MTR_2g034230 45.794 107 58 0 42 148 53 159 5.31e-25 101
MsG0380013596.01.T01 MTR_1g093780 29.717 212 99 3 34 216 4 194 5.96e-25 107
MsG0380013596.01.T01 MTR_7g037570 47.222 108 46 3 13 117 6 105 6.59e-25 99.0
MsG0380013596.01.T01 MTR_4g060870 31.414 191 87 2 58 248 57 203 1.23e-24 105
MsG0380013596.01.T01 MTR_0566s0020 38.272 162 83 4 2 163 20 164 1.93e-24 101
MsG0380013596.01.T01 MTR_3g079805 31.466 232 89 5 39 240 16 207 3.05e-24 102
MsG0380013596.01.T01 MTR_6g464500 53.488 86 40 0 41 126 31 116 1.28e-23 100
MsG0380013596.01.T01 MTR_2g048290 33.962 159 101 3 69 226 31 186 4.69e-23 96.7
MsG0380013596.01.T01 MTR_1g040935 36.429 140 62 1 124 236 2 141 4.80e-23 100
MsG0380013596.01.T01 MTR_5g065660 40.625 128 60 2 101 218 72 193 6.09e-23 97.8
MsG0380013596.01.T01 MTR_3g465060 47.872 94 49 0 94 187 66 159 6.20e-23 99.8
MsG0380013596.01.T01 MTR_8g045340 32.727 165 69 2 80 217 2 151 6.53e-23 100
MsG0380013596.01.T01 MTR_3g464250 35.971 139 62 1 92 203 41 179 8.21e-23 96.7
MsG0380013596.01.T01 MTR_6g043680 33.775 151 87 1 98 235 36 186 9.93e-23 97.1
MsG0380013596.01.T01 MTR_1g063810 40.164 122 70 3 40 159 42 162 3.24e-22 93.2
MsG0380013596.01.T01 MTR_1g033070 42.735 117 65 1 39 153 35 151 7.83e-22 94.0
MsG0380013596.01.T01 MTR_1g032900 32.039 206 101 6 36 239 38 206 8.42e-22 98.2
MsG0380013596.01.T01 MTR_4g009745 40.708 113 57 2 11 122 109 212 4.07e-21 92.8
MsG0380013596.01.T01 MTR_1g041005 35.036 137 62 1 124 233 59 195 4.71e-21 93.6
MsG0380013596.01.T01 MTR_2g074890 37.363 91 57 0 77 167 16 106 5.24e-21 95.5
MsG0380013596.01.T01 MTR_1g062320 26.371 383 202 12 124 433 3 378 8.33e-21 94.0
MsG0380013596.01.T01 MTR_5g048840 30.286 175 92 2 41 215 39 183 3.78e-20 90.9
MsG0380013596.01.T01 MTR_8g063620 42.308 104 59 1 41 143 33 136 4.57e-20 86.3
MsG0380013596.01.T01 MTR_1024s0010 36.364 121 50 1 114 207 5 125 5.21e-20 87.0
MsG0380013596.01.T01 MTR_3g050340 28.877 187 89 2 69 228 42 211 7.75e-20 91.3
MsG0380013596.01.T01 MTR_2g043180 40.187 107 55 2 21 118 42 148 9.56e-20 85.9
MsG0380013596.01.T01 MTR_7g013110 35.115 131 85 0 42 172 41 171 3.81e-19 89.7
MsG0380013596.01.T01 MTR_8g040870 33.333 141 78 2 142 266 37 177 4.53e-19 85.9
MsG0380013596.01.T01 MTR_5g013570 43.158 95 46 2 155 242 21 114 7.36e-18 80.1
MsG0380013596.01.T01 MTR_6g076110 39.655 116 70 0 41 156 60 175 1.56e-17 81.3
MsG0380013596.01.T01 MTR_8g022850 31.579 190 99 5 44 219 10 182 1.91e-17 82.8
MsG0380013596.01.T01 MTR_2g031910 31.783 129 61 1 117 218 1 129 3.03e-17 80.9
MsG0380013596.01.T01 MTR_2g013990 37.903 124 70 4 119 235 27 150 3.28e-17 83.2
MsG0380013596.01.T01 MTR_1g090997 30.714 140 63 2 137 249 1 133 4.39e-17 83.6
MsG0380013596.01.T01 MTR_7g063750 47.222 72 38 0 75 146 144 215 6.54e-17 79.7
MsG0380013596.01.T01 MTR_5g064400 54.098 61 28 0 38 98 77 137 1.66e-16 77.0
MsG0380013596.01.T01 MTR_0063s0100 35.514 107 69 0 75 181 106 212 3.23e-16 79.7
MsG0380013596.01.T01 MTR_4g031410 36.364 121 74 2 120 239 7 125 4.76e-16 78.2
MsG0380013596.01.T01 MTR_4g031755 36.364 121 74 2 120 239 7 125 4.76e-16 78.2
MsG0380013596.01.T01 MTR_3g071850 35.455 110 69 1 36 143 418 527 6.49e-16 80.9
MsG0380013596.01.T01 MTR_3g091430 31.383 188 99 4 38 218 9 173 7.71e-16 78.2
MsG0380013596.01.T01 MTR_4g031785 35.200 125 69 4 120 243 7 120 2.15e-15 77.8
MsG0380013596.01.T01 MTR_6g016995 38.710 93 57 0 94 186 1 93 4.39e-15 71.2
MsG0380013596.01.T01 MTR_1g032820 33.613 119 52 1 122 213 1 119 5.74e-15 73.6
MsG0380013596.01.T01 MTR_8g069240 36.082 97 58 1 67 159 56 152 3.84e-14 71.2
MsG0380013596.01.T01 MTR_7g053210 36.634 101 53 2 2 102 19 108 1.05e-12 64.7
MsG0380013596.01.T01 MTR_5g013810 39.823 113 56 5 10 120 5 107 2.13e-12 66.6
MsG0380013596.01.T01 MTR_1g007020 30.400 125 67 3 122 239 38 149 7.44e-12 67.4
MsG0380013596.01.T01 MTR_5g067840 29.231 130 65 2 58 187 70 172 1.79e-11 63.2
MsG0380013596.01.T01 MTR_6g038330 30.275 109 49 1 122 203 1 109 2.06e-11 64.7
MsG0380013596.01.T01 MTR_2g037610 46.154 65 35 0 42 106 2 66 2.16e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 108 sgRNAs with CRISPR-Local

Find 138 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGAACAATTTCAAAATTCT+TGG 0.193415 3:+41399212 None:intergenic
TTGATCTGCTTGTGACTAAT+TGG 0.220384 3:+41398266 None:intergenic
CCAACCTTTGATCTGGTAAA+AGG 0.238549 3:+41398196 None:intergenic
CTGACTGACTCCACCGAAAC+TGG 0.238890 3:+41399371 None:intergenic
GTTGGTAGCCTCTGCATCTT+TGG 0.251656 3:+41398312 None:intergenic
TCTATGCTGGACAGATCTTT+TGG 0.344488 3:-41399030 MsG0380013596.01.T01:intron
CAGGTGTGGATTCGTATCTA+TGG 0.347444 3:-41399143 MsG0380013596.01.T01:CDS
TCAAAGCCTATGCAAGTTGC+AGG 0.355079 3:-41398679 MsG0380013596.01.T01:CDS
GTGACAATTGCTTTCTGAAC+AGG 0.363868 3:+41398394 None:intergenic
CCAGCCTCATATTCTTCATC+TGG 0.367393 3:+41399452 None:intergenic
AGAGGCCACGGAGGATGAAT+TGG 0.372142 3:-41398422 MsG0380013596.01.T01:CDS
ATAATCTTAGTTGAAAGAAC+AGG 0.383547 3:-41398955 MsG0380013596.01.T01:CDS
AAGTTTCTAGCTGCCACATC+TGG 0.387362 3:+41398367 None:intergenic
AGCAAATGTCTTATGTTGTC+TGG 0.421300 3:+41399559 None:intergenic
AACCCTTGATCATCAACATC+AGG 0.430178 3:+41398289 None:intergenic
TTTCCATAAAACAGCTAGCT+TGG 0.438047 3:+41399346 None:intergenic
AAAAGGTTCAAGCCCAGTTT+CGG 0.441739 3:-41399384 MsG0380013596.01.T01:CDS
TGTACCTATTGTAAATGTAC+TGG 0.445046 3:-41398886 MsG0380013596.01.T01:CDS
ATGACCAGTACATTTACAAT+AGG 0.449058 3:+41398882 None:intergenic
TAGTGTTTCTAAAGAATACT+TGG 0.450521 3:-41398462 MsG0380013596.01.T01:CDS
TATGGAAAACACTAGGAAGA+TGG 0.451384 3:-41399331 MsG0380013596.01.T01:CDS
GCGTAGTGGCTTGTTGTTGA+AGG 0.451773 3:+41399165 None:intergenic
TGAAACCGGTTCTGAATTTG+TGG 0.452672 3:-41398596 MsG0380013596.01.T01:CDS
AGATGGGGAGTGACTTCAAT+TGG 0.453803 3:-41399314 MsG0380013596.01.T01:CDS
ACACTTCATCGGAAAGGATT+GGG 0.458469 3:+41398169 None:intergenic
AACAGGGTATGCGTTCTTTG+TGG 0.464425 3:-41398938 MsG0380013596.01.T01:CDS
GTTTCTCCTGCAACTTGCAT+AGG 0.468155 3:+41398673 None:intergenic
GATTTAGATGGAGATGGTTG+AGG 0.468598 3:+41399608 None:intergenic
TTGAGGACTAGCTTTCTTGT+CGG 0.468676 3:+41398234 None:intergenic
TTACAATAGGTACAAAAGTC+TGG 0.469461 3:+41398895 None:intergenic
GACTGCAAATACAATTTACA+TGG 0.469983 3:-41399422 MsG0380013596.01.T01:CDS
GGGTAAGATCGGTAGGATCT+TGG 0.470395 3:-41399244 MsG0380013596.01.T01:CDS
GGGTGCACCAACCTTTGATC+TGG 0.470493 3:+41398189 None:intergenic
ATTCTCCACAAATTCAGAAC+CGG 0.470885 3:+41398591 None:intergenic
AACACTTCATCGGAAAGGAT+TGG 0.472458 3:+41398168 None:intergenic
AACCCTGATGTTGATGATCA+AGG 0.472802 3:-41398292 MsG0380013596.01.T01:CDS
CCTGCGCATGTCTTCAATAG+AGG 0.473152 3:+41399265 None:intergenic
GGACGCGGGGAAGATTTAGA+TGG 0.475522 3:+41399596 None:intergenic
ATGGAAAACACTAGGAAGAT+GGG 0.487158 3:-41399330 MsG0380013596.01.T01:CDS
GTGGCTTGTTGTTGAAGGCT+AGG 0.492513 3:+41399170 None:intergenic
GCAAGGCCAGGTAACAATGA+TGG 0.493302 3:+41399640 None:intergenic
TGTCTTATGTTGTCTGGTGA+TGG 0.497250 3:+41399565 None:intergenic
ATTGACTATGAAACTGAAAC+CGG 0.497633 3:-41398610 MsG0380013596.01.T01:CDS
GGGTTTGAGTGGTGGTGGAA+CGG 0.500415 3:+41399661 None:intergenic
CCGTGGCCTCTTTGTCTGCA+AGG 0.504095 3:+41398434 None:intergenic
TTGGACACTGAAGCTTCAGC+AGG 0.504451 3:+41398331 None:intergenic
ATCAGACTCACCTTTACATC+AGG 0.506511 3:-41398740 MsG0380013596.01.T01:intron
ACCCTGATGTTGATGATCAA+GGG 0.509910 3:-41398291 MsG0380013596.01.T01:CDS
TTCACATCATCCTGATGTAA+AGG 0.511957 3:+41398730 None:intergenic
AGATGTGGCAGCTAGAAACT+TGG 0.521017 3:-41398365 MsG0380013596.01.T01:CDS
TGGTGGTGGAACGGTGGTCA+TGG 0.522751 3:+41399670 None:intergenic
GCTTCCAAAACCCTATCGTA+AGG 0.523306 3:-41399498 MsG0380013596.01.T01:CDS
GATCCCAGATGAAGAATATG+AGG 0.525642 3:-41399456 MsG0380013596.01.T01:CDS
TATTCACTGAGGAAGAGAAC+AGG 0.527185 3:-41398642 MsG0380013596.01.T01:CDS
AGGTGTGGATTCGTATCTAT+GGG 0.527291 3:-41399142 MsG0380013596.01.T01:CDS
TGAATCAGAGGTAAGTGAGA+AGG 0.536664 3:-41398518 MsG0380013596.01.T01:CDS
CAAGTTAACATGGAGAAAGA+TGG 0.537411 3:-41398565 MsG0380013596.01.T01:CDS
ACAATGATGGGTTTGAGTGG+TGG 0.543680 3:+41399653 None:intergenic
AGGTGATTGAAGGCAAGGCC+AGG 0.546171 3:+41399628 None:intergenic
CAAGGCCAGGTAACAATGAT+GGG 0.555818 3:+41399641 None:intergenic
CCTCTATTGAAGACATGCGC+AGG 0.557166 3:-41399265 MsG0380013596.01.T01:CDS
TCGTATCTATGGGCTTGCAC+AGG 0.560034 3:-41399132 MsG0380013596.01.T01:CDS
CACAAGCAGATCAACAAAGA+AGG 0.561301 3:-41398257 MsG0380013596.01.T01:CDS
ATGCGCAGGGTAAGATCGGT+AGG 0.562114 3:-41399251 MsG0380013596.01.T01:CDS
GAGATGGTTGAGGTGATTGA+AGG 0.562356 3:+41399618 None:intergenic
ATTCATTACATTCCTCCGCA+TGG 0.566038 3:+41398536 None:intergenic
TGACTGACTCCACCGAAACT+GGG 0.566432 3:+41399372 None:intergenic
GGTTGAGGTGATTGAAGGCA+AGG 0.568461 3:+41399623 None:intergenic
AGGTTCAAGCCCAGTTTCGG+TGG 0.571668 3:-41399381 MsG0380013596.01.T01:CDS
GGGGAAGATTTAGATGGAGA+TGG 0.572276 3:+41399602 None:intergenic
CCAGATGAAGAATATGAGGC+TGG 0.578581 3:-41399452 MsG0380013596.01.T01:CDS
TCAAACCCATCATTGTTACC+TGG 0.581273 3:-41399646 MsG0380013596.01.T01:CDS
AGACATGCGCAGGGTAAGAT+CGG 0.582055 3:-41399255 MsG0380013596.01.T01:CDS
ATCAGAGGTAAGTGAGAAGG+AGG 0.582346 3:-41398515 MsG0380013596.01.T01:CDS
CTTCCAAAACCCTATCGTAA+GGG 0.583977 3:-41399497 MsG0380013596.01.T01:CDS
ATGATGGGTTTGAGTGGTGG+TGG 0.586558 3:+41399656 None:intergenic
TTCCAAAACCCTATCGTAAG+GGG 0.589260 3:-41399496 MsG0380013596.01.T01:CDS
CAGCCTCATATTCTTCATCT+GGG 0.589739 3:+41399453 None:intergenic
ACATCAGGATGATGTGAACC+TGG 0.593748 3:-41398725 MsG0380013596.01.T01:CDS
GGCTGACCTTGCAGACAAAG+AGG 0.595421 3:-41398440 MsG0380013596.01.T01:CDS
AACAAGCCACTACGCAGGTG+TGG 0.600458 3:-41399157 MsG0380013596.01.T01:CDS
AGTGTTTCTAAAGAATACTT+GGG 0.601409 3:-41398461 MsG0380013596.01.T01:CDS
TTGATCATCAACATCAGGGT+TGG 0.603284 3:+41398294 None:intergenic
GTGATGGTTGTGAAAGGACG+CGG 0.607647 3:+41399581 None:intergenic
TTTCTAGCTGCCACATCTGG+AGG 0.609765 3:+41398370 None:intergenic
AATTGTCACTCCTCCAGATG+TGG 0.610787 3:-41398380 MsG0380013596.01.T01:CDS
CCTTGCAGACAAAGAGGCCA+CGG 0.613879 3:-41398434 MsG0380013596.01.T01:CDS
TTCAGTGTCCAAAGATGCAG+AGG 0.614721 3:-41398320 MsG0380013596.01.T01:CDS
CTCTATTGAAGACATGCGCA+GGG 0.615581 3:-41399264 MsG0380013596.01.T01:CDS
GTATAAACACTTCATCGGAA+AGG 0.622566 3:+41398163 None:intergenic
TGATGGTTGTGAAAGGACGC+GGG 0.624718 3:+41399582 None:intergenic
TTTGAGTGGTGGTGGAACGG+TGG 0.625105 3:+41399664 None:intergenic
TGGAAAACACTAGGAAGATG+GGG 0.634150 3:-41399329 MsG0380013596.01.T01:CDS
ACCCTTGATCATCAACATCA+GGG 0.636268 3:+41398290 None:intergenic
GGAGAATACTCAAGTTAACA+TGG 0.642196 3:-41398575 MsG0380013596.01.T01:CDS
GTGGCAGCTAGAAACTTGGA+TGG 0.646795 3:-41398361 MsG0380013596.01.T01:CDS
GGAGGAATGTAATGAATCAG+AGG 0.649823 3:-41398530 MsG0380013596.01.T01:CDS
TAATCTTAGTTGAAAGAACA+GGG 0.664911 3:-41398954 MsG0380013596.01.T01:CDS
ACGAATCCACACCTGCGTAG+TGG 0.668238 3:+41399151 None:intergenic
AATTTCCAATTCATCCTCCG+TGG 0.677026 3:+41398417 None:intergenic
TCAACAACAAGCCACTACGC+AGG 0.677643 3:-41399162 MsG0380013596.01.T01:CDS
TCCAAAACCCTATCGTAAGG+GGG 0.682032 3:-41399495 MsG0380013596.01.T01:CDS
TGTCTGGTGATGGTTGTGAA+AGG 0.689728 3:+41399575 None:intergenic
AGATGGTTCAGACCATGCGG+AGG 0.703279 3:-41398548 MsG0380013596.01.T01:CDS
GATGGTTGTGAAAGGACGCG+GGG 0.703682 3:+41399583 None:intergenic
GAAAGATGGTTCAGACCATG+CGG 0.704911 3:-41398551 MsG0380013596.01.T01:CDS
GTAACAATGATGGGTTTGAG+TGG 0.707687 3:+41399650 None:intergenic
TGCAGACAAAGAGGCCACGG+AGG 0.714134 3:-41398431 MsG0380013596.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTACTTTGATATTTGTAAA+AGG - Chr3:41398981-41399000 MsG0380013596.01.T01:CDS 15.0%
!!! GGCAAAATTATTTTATCAAA+AGG - Chr3:41398441-41398460 MsG0380013596.01.T01:CDS 20.0%
! AAATTATTTGCCATAGCAAA+TGG - Chr3:41398749-41398768 MsG0380013596.01.T01:intron 25.0%
! ACTTTGATATTTGTAAAAGG+AGG - Chr3:41398984-41399003 MsG0380013596.01.T01:CDS 25.0%
! ATAATCTTAGTTGAAAGAAC+AGG - Chr3:41398887-41398906 MsG0380013596.01.T01:CDS 25.0%
! GTGAACAATTTCAAAATTCT+TGG + Chr3:41398633-41398652 None:intergenic 25.0%
! TAATCTTAGTTGAAAGAACA+GGG - Chr3:41398888-41398907 MsG0380013596.01.T01:CDS 25.0%
!! AGTGTTTCTAAAGAATACTT+GGG - Chr3:41399381-41399400 MsG0380013596.01.T01:CDS 25.0%
!! CATCATTTATTTCATTTTCC+AGG + Chr3:41399138-41399157 None:intergenic 25.0%
!! TAGTGTTTCTAAAGAATACT+TGG - Chr3:41399380-41399399 MsG0380013596.01.T01:CDS 25.0%
!!! GAATTTTGAAATTGTTCACA+TGG - Chr3:41398634-41398653 MsG0380013596.01.T01:CDS 25.0%
AACCTCAAAAATATTCACTG+AGG - Chr3:41399189-41399208 MsG0380013596.01.T01:CDS 30.0%
AAGAAAATGGAGACACAAAA+GGG - Chr3:41399016-41399035 MsG0380013596.01.T01:CDS 30.0%
ATGACCAGTACATTTACAAT+AGG + Chr3:41398963-41398982 None:intergenic 30.0%
ATTGACTATGAAACTGAAAC+CGG - Chr3:41399232-41399251 MsG0380013596.01.T01:CDS 30.0%
GACTGCAAATACAATTTACA+TGG - Chr3:41398420-41398439 MsG0380013596.01.T01:CDS 30.0%
GTGATATTATCAGTGCATAT+CGG + Chr3:41398785-41398804 None:intergenic 30.0%
TCTGTTCAATCTTCTTCTAT+TGG + Chr3:41399042-41399061 None:intergenic 30.0%
TGTACCTATTGTAAATGTAC+TGG - Chr3:41398956-41398975 MsG0380013596.01.T01:CDS 30.0%
TTACAATAGGTACAAAAGTC+TGG + Chr3:41398950-41398969 None:intergenic 30.0%
! ATATGCACTGATAATATCAC+TGG - Chr3:41398785-41398804 MsG0380013596.01.T01:intron 30.0%
!! TTCCTCAGTGAATATTTTTG+AGG + Chr3:41399194-41399213 None:intergenic 30.0%
!!! GGCTTTGTTTTTAATCTTTG+AGG + Chr3:41399628-41399647 None:intergenic 30.0%
AGCAAATGTCTTATGTTGTC+TGG + Chr3:41398286-41398305 None:intergenic 35.0%
ATGGAAAACACTAGGAAGAT+GGG - Chr3:41398512-41398531 MsG0380013596.01.T01:CDS 35.0%
ATTCTCCACAAATTCAGAAC+CGG + Chr3:41399254-41399273 None:intergenic 35.0%
CAAGTTAACATGGAGAAAGA+TGG - Chr3:41399277-41399296 MsG0380013596.01.T01:CDS 35.0%
GAAGAAAATGGAGACACAAA+AGG - Chr3:41399015-41399034 MsG0380013596.01.T01:CDS 35.0%
GACTTACAAGCAGAAAGTTA+AGG - Chr3:41399060-41399079 MsG0380013596.01.T01:intron 35.0%
GGAGAATACTCAAGTTAACA+TGG - Chr3:41399267-41399286 MsG0380013596.01.T01:CDS 35.0%
TATGGAAAACACTAGGAAGA+TGG - Chr3:41398511-41398530 MsG0380013596.01.T01:CDS 35.0%
TCTGATACATTCATCACTTC+AGG + Chr3:41399088-41399107 None:intergenic 35.0%
TTCACATCATCCTGATGTAA+AGG + Chr3:41399115-41399134 None:intergenic 35.0%
TTGATCTGCTTGTGACTAAT+TGG + Chr3:41399579-41399598 None:intergenic 35.0%
TTTCCATAAAACAGCTAGCT+TGG + Chr3:41398499-41398518 None:intergenic 35.0%
! AAAGCCTTTTACCAGATCAA+AGG - Chr3:41399642-41399661 MsG0380013596.01.T01:CDS 35.0%
!! GCTGTTTTATGGAAAACACT+AGG - Chr3:41398504-41398523 MsG0380013596.01.T01:CDS 35.0%
AAAAGGTTCAAGCCCAGTTT+CGG - Chr3:41398458-41398477 MsG0380013596.01.T01:CDS 40.0%
AACCCTTGATCATCAACATC+AGG + Chr3:41399556-41399575 None:intergenic 40.0%
AATTTCCAATTCATCCTCCG+TGG + Chr3:41399428-41399447 None:intergenic 40.0%
ACCCTTGATCATCAACATCA+GGG + Chr3:41399555-41399574 None:intergenic 40.0%
AGGTGTGGATTCGTATCTAT+GGG - Chr3:41398700-41398719 MsG0380013596.01.T01:CDS 40.0%
ATCAGACTCACCTTTACATC+AGG - Chr3:41399102-41399121 MsG0380013596.01.T01:intron 40.0%
ATTCATTACATTCCTCCGCA+TGG + Chr3:41399309-41399328 None:intergenic 40.0%
CACAAGCAGATCAACAAAGA+AGG - Chr3:41399585-41399604 MsG0380013596.01.T01:CDS 40.0%
CAGCCTCATATTCTTCATCT+GGG + Chr3:41398392-41398411 None:intergenic 40.0%
CCAACCTTTGATCTGGTAAA+AGG + Chr3:41399649-41399668 None:intergenic 40.0%
CTATTATCCCCCTTACGATA+GGG + Chr3:41398357-41398376 None:intergenic 40.0%
CTTCCAAAACCCTATCGTAA+GGG - Chr3:41398345-41398364 MsG0380013596.01.T01:CDS 40.0%
GATCCCAGATGAAGAATATG+AGG - Chr3:41398386-41398405 MsG0380013596.01.T01:CDS 40.0%
GATTTAGATGGAGATGGTTG+AGG + Chr3:41398237-41398256 None:intergenic 40.0%
GGAGGAATGTAATGAATCAG+AGG - Chr3:41399312-41399331 MsG0380013596.01.T01:CDS 40.0%
GTGACAATTGCTTTCTGAAC+AGG + Chr3:41399451-41399470 None:intergenic 40.0%
TATCACTGGTAAGTCTATGC+TGG - Chr3:41398799-41398818 MsG0380013596.01.T01:intron 40.0%
TATTCACTGAGGAAGAGAAC+AGG - Chr3:41399200-41399219 MsG0380013596.01.T01:CDS 40.0%
TCAAACCCATCATTGTTACC+TGG - Chr3:41398196-41398215 MsG0380013596.01.T01:CDS 40.0%
TCTATTATCCCCCTTACGAT+AGG + Chr3:41398358-41398377 None:intergenic 40.0%
TGAATCAGAGGTAAGTGAGA+AGG - Chr3:41399324-41399343 MsG0380013596.01.T01:CDS 40.0%
TGGAAAACACTAGGAAGATG+GGG - Chr3:41398513-41398532 MsG0380013596.01.T01:CDS 40.0%
TGTCTTATGTTGTCTGGTGA+TGG + Chr3:41398280-41398299 None:intergenic 40.0%
TTCCAAAACCCTATCGTAAG+GGG - Chr3:41398346-41398365 MsG0380013596.01.T01:CDS 40.0%
TTGATCATCAACATCAGGGT+TGG + Chr3:41399551-41399570 None:intergenic 40.0%
TTTGCCATAGCAAATGGAGT+AGG - Chr3:41398755-41398774 MsG0380013596.01.T01:intron 40.0%
! CCTTTTACCAGATCAAAGGT+TGG - Chr3:41399646-41399665 MsG0380013596.01.T01:CDS 40.0%
! GATCTTTTGGTCACTATGCT+AGG - Chr3:41398825-41398844 MsG0380013596.01.T01:intron 40.0%
! TCTATGCTGGACAGATCTTT+TGG - Chr3:41398812-41398831 MsG0380013596.01.T01:intron 40.0%
! TGTTCCTACTCCATTTGCTA+TGG + Chr3:41398762-41398781 None:intergenic 40.0%
!! AACCCTGATGTTGATGATCA+AGG - Chr3:41399550-41399569 MsG0380013596.01.T01:CDS 40.0%
!! ACCCTGATGTTGATGATCAA+GGG - Chr3:41399551-41399570 MsG0380013596.01.T01:CDS 40.0%
!! GATCCAAGCTAGCTGTTTTA+TGG - Chr3:41398493-41398512 MsG0380013596.01.T01:CDS 40.0%
!! GTAACAATGATGGGTTTGAG+TGG + Chr3:41398195-41398214 None:intergenic 40.0%
!! TGAAACCGGTTCTGAATTTG+TGG - Chr3:41399246-41399265 MsG0380013596.01.T01:CDS 40.0%
!! TTGAGGACTAGCTTTCTTGT+CGG + Chr3:41399611-41399630 None:intergenic 40.0%
AACAGGGTATGCGTTCTTTG+TGG - Chr3:41398904-41398923 MsG0380013596.01.T01:CDS 45.0%
AATTGTCACTCCTCCAGATG+TGG - Chr3:41399462-41399481 MsG0380013596.01.T01:CDS 45.0%
ACATCAGGATGATGTGAACC+TGG - Chr3:41399117-41399136 MsG0380013596.01.T01:intron 45.0%
AGATGGGGAGTGACTTCAAT+TGG - Chr3:41398528-41398547 MsG0380013596.01.T01:CDS 45.0%
AGATGTGGCAGCTAGAAACT+TGG - Chr3:41399477-41399496 MsG0380013596.01.T01:CDS 45.0%
ATCAGAGGTAAGTGAGAAGG+AGG - Chr3:41399327-41399346 MsG0380013596.01.T01:CDS 45.0%
CAAGGCCAGGTAACAATGAT+GGG + Chr3:41398204-41398223 None:intergenic 45.0%
CAGGTGTGGATTCGTATCTA+TGG - Chr3:41398699-41398718 MsG0380013596.01.T01:CDS 45.0%
CCAGATGAAGAATATGAGGC+TGG - Chr3:41398390-41398409 MsG0380013596.01.T01:CDS 45.0%
CCAGCCTCATATTCTTCATC+TGG + Chr3:41398393-41398412 None:intergenic 45.0%
CTCTATTGAAGACATGCGCA+GGG - Chr3:41398578-41398597 MsG0380013596.01.T01:CDS 45.0%
GAAAGATGGTTCAGACCATG+CGG - Chr3:41399291-41399310 MsG0380013596.01.T01:CDS 45.0%
GAGATGGTTGAGGTGATTGA+AGG + Chr3:41398227-41398246 None:intergenic 45.0%
GCTTCCAAAACCCTATCGTA+AGG - Chr3:41398344-41398363 MsG0380013596.01.T01:CDS 45.0%
GGGGAAGATTTAGATGGAGA+TGG + Chr3:41398243-41398262 None:intergenic 45.0%
GTTTCTCCTGCAACTTGCAT+AGG + Chr3:41399172-41399191 None:intergenic 45.0%
TCAAAGCCTATGCAAGTTGC+AGG - Chr3:41399163-41399182 MsG0380013596.01.T01:CDS 45.0%
TCCAAAACCCTATCGTAAGG+GGG - Chr3:41398347-41398366 MsG0380013596.01.T01:CDS 45.0%
TTCAGTGTCCAAAGATGCAG+AGG - Chr3:41399522-41399541 MsG0380013596.01.T01:CDS 45.0%
! GTCTCCATTTTCTTCTCTGC+TGG + Chr3:41399010-41399029 None:intergenic 45.0%
!! AAGTTTCTAGCTGCCACATC+TGG + Chr3:41399478-41399497 None:intergenic 45.0%
!! ACAATGATGGGTTTGAGTGG+TGG + Chr3:41398192-41398211 None:intergenic 45.0%
!! TGTCTGGTGATGGTTGTGAA+AGG + Chr3:41398270-41398289 None:intergenic 45.0%
!!! GTTTTGGAAGCTGGCTCAAT+GGG + Chr3:41398335-41398354 None:intergenic 45.0%
!!! TACGATAGGGTTTTGGAAGC+TGG + Chr3:41398344-41398363 None:intergenic 45.0%
AGACATGCGCAGGGTAAGAT+CGG - Chr3:41398587-41398606 MsG0380013596.01.T01:CDS 50.0%
CCTCTATTGAAGACATGCGC+AGG - Chr3:41398577-41398596 MsG0380013596.01.T01:CDS 50.0%
CCTGCGCATGTCTTCAATAG+AGG + Chr3:41398580-41398599 None:intergenic 50.0%
GAGGCCAGCAGAGAAGAAAA+TGG - Chr3:41399003-41399022 MsG0380013596.01.T01:CDS 50.0%
GCAAGGCCAGGTAACAATGA+TGG + Chr3:41398205-41398224 None:intergenic 50.0%
GGGTAAGATCGGTAGGATCT+TGG - Chr3:41398598-41398617 MsG0380013596.01.T01:CDS 50.0%
GGTTGAGGTGATTGAAGGCA+AGG + Chr3:41398222-41398241 None:intergenic 50.0%
GTGATGGTTGTGAAAGGACG+CGG + Chr3:41398264-41398283 None:intergenic 50.0%
GTGGCAGCTAGAAACTTGGA+TGG - Chr3:41399481-41399500 MsG0380013596.01.T01:CDS 50.0%
TCAACAACAAGCCACTACGC+AGG - Chr3:41398680-41398699 MsG0380013596.01.T01:CDS 50.0%
TCGTATCTATGGGCTTGCAC+AGG - Chr3:41398710-41398729 MsG0380013596.01.T01:CDS 50.0%
TGATGGTTGTGAAAGGACGC+GGG + Chr3:41398263-41398282 None:intergenic 50.0%
TTGGACACTGAAGCTTCAGC+AGG + Chr3:41399514-41399533 None:intergenic 50.0%
! ATGGGCTTGCACAGGAGTAT+TGG - Chr3:41398718-41398737 MsG0380013596.01.T01:CDS 50.0%
! TCCCCCTTACGATAGGGTTT+TGG + Chr3:41398351-41398370 None:intergenic 50.0%
! TGACTGACTCCACCGAAACT+GGG + Chr3:41398473-41398492 None:intergenic 50.0%
!! ATGATGGGTTTGAGTGGTGG+TGG + Chr3:41398189-41398208 None:intergenic 50.0%
!! GCGTAGTGGCTTGTTGTTGA+AGG + Chr3:41398680-41398699 None:intergenic 50.0%
!! GTGGCTTGTTGTTGAAGGCT+AGG + Chr3:41398675-41398694 None:intergenic 50.0%
!! GTTGGTAGCCTCTGCATCTT+TGG + Chr3:41399533-41399552 None:intergenic 50.0%
!! TTTCTAGCTGCCACATCTGG+AGG + Chr3:41399475-41399494 None:intergenic 50.0%
!!! GGTTTTGGAAGCTGGCTCAA+TGG + Chr3:41398336-41398355 None:intergenic 50.0%
AACAAGCCACTACGCAGGTG+TGG - Chr3:41398685-41398704 MsG0380013596.01.T01:CDS 55.0%
ACGAATCCACACCTGCGTAG+TGG + Chr3:41398694-41398713 None:intergenic 55.0%
AGAGGCCACGGAGGATGAAT+TGG - Chr3:41399420-41399439 MsG0380013596.01.T01:CDS 55.0%
AGATGGTTCAGACCATGCGG+AGG - Chr3:41399294-41399313 MsG0380013596.01.T01:CDS 55.0%
AGGTGATTGAAGGCAAGGCC+AGG + Chr3:41398217-41398236 None:intergenic 55.0%
AGGTTCAAGCCCAGTTTCGG+TGG - Chr3:41398461-41398480 MsG0380013596.01.T01:CDS 55.0%
ATGCGCAGGGTAAGATCGGT+AGG - Chr3:41398591-41398610 MsG0380013596.01.T01:CDS 55.0%
CCTTGCAGACAAAGAGGCCA+CGG - Chr3:41399408-41399427 MsG0380013596.01.T01:CDS 55.0%
GATGGTTGTGAAAGGACGCG+GGG + Chr3:41398262-41398281 None:intergenic 55.0%
GGACGCGGGGAAGATTTAGA+TGG + Chr3:41398249-41398268 None:intergenic 55.0%
GGCTGACCTTGCAGACAAAG+AGG - Chr3:41399402-41399421 MsG0380013596.01.T01:CDS 55.0%
GGGTGCACCAACCTTTGATC+TGG + Chr3:41399656-41399675 None:intergenic 55.0%
! CTGACTGACTCCACCGAAAC+TGG + Chr3:41398474-41398493 None:intergenic 55.0%
!! GGCTTGCACAGGAGTATTGG+AGG - Chr3:41398721-41398740 MsG0380013596.01.T01:CDS 55.0%
!! GGGTTTGAGTGGTGGTGGAA+CGG + Chr3:41398184-41398203 None:intergenic 55.0%
!! TTTGAGTGGTGGTGGAACGG+TGG + Chr3:41398181-41398200 None:intergenic 55.0%
CCGTGGCCTCTTTGTCTGCA+AGG + Chr3:41399411-41399430 None:intergenic 60.0%
TGCAGACAAAGAGGCCACGG+AGG - Chr3:41399411-41399430 MsG0380013596.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr3 gene 41398174 41399690 41398174 ID=MsG0380013596.01;Name=MsG0380013596.01
Chr3 mRNA 41398174 41399690 41398174 ID=MsG0380013596.01.T01;Parent=MsG0380013596.01;Name=MsG0380013596.01.T01;_AED=0.47;_eAED=0.47;_QI=0|0|0|1|1|1|3|0|437
Chr3 exon 41399131 41399690 41399131 ID=MsG0380013596.01.T01:exon:1652;Parent=MsG0380013596.01.T01
Chr3 exon 41398869 41399038 41398869 ID=MsG0380013596.01.T01:exon:1651;Parent=MsG0380013596.01.T01
Chr3 exon 41398174 41398757 41398174 ID=MsG0380013596.01.T01:exon:1650;Parent=MsG0380013596.01.T01
Chr3 CDS 41399131 41399690 41399131 ID=MsG0380013596.01.T01:cds;Parent=MsG0380013596.01.T01
Chr3 CDS 41398869 41399038 41398869 ID=MsG0380013596.01.T01:cds;Parent=MsG0380013596.01.T01
Chr3 CDS 41398174 41398757 41398174 ID=MsG0380013596.01.T01:cds;Parent=MsG0380013596.01.T01
Gene Sequence

>MsG0380013596.01.T01

ATGACCACCGTTCCACCACCACTCAAACCCATCATTGTTACCTGGCCTTGCCTTCAATCACCTCAACCATCTCCATCTAAATCTTCCCCGCGTCCTTTCACAACCATCACCAGACAACATAAGACATTTGCTCAAGCTGTGAGTAATATTTGTGACATCCCATTGAGCCAGCTTCCAAAACCCTATCGTAAGGGGGATAATAGATCAATTCAGATCCCAGATGAAGAATATGAGGCTGGTCTTGTTGACTGCAAATACAATTTACATGGCAAAATTATTTTATCAAAAGGTTCAAGCCCAGTTTCGGTGGAGTCAGTCAGATCCAAGCTAGCTGTTTTATGGAAAACACTAGGAAGATGGGGAGTGACTTCAATTGGCAAAGTTTTTTATGAATTTTCTTTCTCCTCTATTGAAGACATGCGCAGGGTAAGATCGGTAGGATCTTGGAGTTTGAATCCAAGAATTTTGAAATTGTTCACATGGAGCAAAGATTTCAGTCCTAGCCTTCAACAACAAGCCACTACGCAGGTGTGGATTCGTATCTATGGGCTTGCACAGGAATCTTTTGGTCACTATGCTAGGATTTTGATAGACTTGAATTTAAATGAAGAATTATGTCATATAATCTTAGTTGAAAGAACAGGGTATGCGTTCTTTGTGGATATAGAGTATGAAAATCTGCCAGACTTTTGTACCTATTGTAAATGTACTGGTCATTACTTTGATATTTACTCACCTTTACATCAGGATGATGTGAACCTGGAAAATGAAATAAATGATGAACTTTCAAAGCCTATGCAAGTTGCAGGAGAAACCTCAAAAATATTCACTGAGGAAGAGAACAGGACACATGACATTGACTATGAAACTGAAACCGGTTCTGAATTTGTGGAGAATACTCAAGTTAACATGGAGAAAGATGGTTCAGACCATGCGGAGGAATGTAATGAATCAGAGGTAAGTGAGAAGGAGGACAACATTCATGAGATTGTGCAGAATGACATAGTGTTTCTAAAGAATACTTGGGCTGACCTTGCAGACAAAGAGGCCACGGAGGATGAATTGGAAATTCCTGTTCAGAAAGCAATTGTCACTCCTCCAGATGTGGCAGCTAGAAACTTGGATGGTAAGCTTCCTGCTGAAGCTTCAGTGTCCAAAGATGCAGAGGCTACCAACCCTGATGTTGATGATCAAGGGTTCCAATTAGTCACAAGCAGATCAACAAAGAAGGCCGACAAGAAAGCTAGTCCTCAAAGATTAAAAACAAAGCCTTTTACCAGATCAAAGGTTGGTGCACCCAATCCTTTCCGATGA

Protein sequence

>MsG0380013596.01.T01

MTTVPPPLKPIIVTWPCLQSPQPSPSKSSPRPFTTITRQHKTFAQAVSNICDIPLSQLPKPYRKGDNRSIQIPDEEYEAGLVDCKYNLHGKIILSKGSSPVSVESVRSKLAVLWKTLGRWGVTSIGKVFYEFSFSSIEDMRRVRSVGSWSLNPRILKLFTWSKDFSPSLQQQATTQVWIRIYGLAQESFGHYARILIDLNLNEELCHIILVERTGYAFFVDIEYENLPDFCTYCKCTGHYFDIYSPLHQDDVNLENEINDELSKPMQVAGETSKIFTEEENRTHDIDYETETGSEFVENTQVNMEKDGSDHAEECNESEVSEKEDNIHEIVQNDIVFLKNTWADLADKEATEDELEIPVQKAIVTPPDVAARNLDGKLPAEASVSKDAEATNPDVDDQGFQLVTSRSTKKADKKASPQRLKTKPFTRSKVGAPNPFR*