Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380012244.01.T01 | XP_003598677.2 | 89.706 | 204 | 8 | 1 | 1 | 204 | 1 | 191 | 1.90E-125 | 362 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380012244.01.T01 | Q9LK88 | 67.5 | 200 | 52 | 1 | 4 | 203 | 10 | 196 | 3.41E-90 | 265 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380012244.01.T01 | G7IW39 | 89.706 | 204 | 8 | 1 | 1 | 204 | 1 | 191 | 9.06e-126 | 362 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048301.01 | MsG0380012244.01 | 0.807978 | 3.880362e-50 | 2.191986e-47 |
| MsG0180001533.01 | MsG0380012244.01 | 0.805343 | 1.397610e-49 | 7.375969e-47 |
| MsG0180004203.01 | MsG0380012244.01 | 0.820455 | 6.797077e-53 | 5.380984e-50 |
| MsG0380012244.01 | MsG0380016261.01 | 0.810950 | 8.934036e-51 | 5.459983e-48 |
| MsG0380012244.01 | MsG0380017151.01 | 0.805404 | 1.357204e-49 | 7.174036e-47 |
| MsG0380012244.01 | MsG0480022515.01 | 0.817939 | 2.542670e-52 | 1.877266e-49 |
| MsG0380012244.01 | MsG0480023819.01 | 0.810371 | 1.191651e-50 | 7.170268e-48 |
| MsG0380012244.01 | MsG0580025683.01 | 0.827138 | 1.846028e-54 | 1.766586e-51 |
| MsG0380012244.01 | MsG0580025870.01 | 0.807289 | 5.437228e-50 | 3.016779e-47 |
| MsG0380012244.01 | MsG0580030145.01 | 0.813235 | 2.836378e-51 | 1.841929e-48 |
| MsG0380012244.01 | MsG0780037943.01 | 0.806227 | 9.113593e-50 | 4.920265e-47 |
| MsG0380012244.01 | MsG0780038622.01 | 0.800325 | 1.519607e-48 | 7.055740e-46 |
| MsG0380012244.01 | MsG0780039576.01 | 0.804616 | 1.982792e-49 | 1.027024e-46 |
| MsG0380012244.01 | MsG0780039968.01 | 0.827229 | 1.755848e-54 | 1.684786e-51 |
| MsG0380012244.01 | MsG0880045677.01 | 0.811651 | 6.294208e-51 | 3.917809e-48 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380012244.01.T01 | MTR_3g019160 | 89.706 | 204 | 8 | 1 | 1 | 204 | 1 | 191 | 2.30e-129 | 362 |
| MsG0380012244.01.T01 | MTR_3g019150 | 79.412 | 204 | 28 | 2 | 1 | 204 | 1 | 190 | 1.77e-112 | 319 |
| MsG0380012244.01.T01 | MTR_3g019090 | 72.059 | 204 | 44 | 1 | 1 | 204 | 1 | 191 | 5.75e-104 | 298 |
| MsG0380012244.01.T01 | MTR_8g039090 | 70.297 | 202 | 47 | 1 | 3 | 204 | 4 | 192 | 1.72e-102 | 294 |
| MsG0380012244.01.T01 | MTR_3g019120 | 63.861 | 202 | 63 | 2 | 1 | 202 | 1 | 192 | 8.20e-85 | 256 |
| MsG0380012244.01.T01 | MTR_3g019120 | 63.861 | 202 | 63 | 2 | 1 | 202 | 1 | 192 | 1.49e-83 | 256 |
| MsG0380012244.01.T01 | MTR_3g019090 | 77.465 | 142 | 32 | 0 | 63 | 204 | 1 | 142 | 4.67e-79 | 233 |
| MsG0380012244.01.T01 | MTR_3g019120 | 72.973 | 148 | 40 | 0 | 55 | 202 | 5 | 152 | 4.49e-74 | 231 |
| MsG0380012244.01.T01 | MTR_3g019150 | 88.119 | 101 | 12 | 0 | 104 | 204 | 34 | 134 | 6.92e-62 | 189 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380012244.01.T01 | AT3G27890 | 67.500 | 200 | 52 | 1 | 4 | 203 | 10 | 196 | 3.47e-91 | 265 |
Find 53 sgRNAs with CRISPR-Local
Find 90 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCCATTTCAAGCTATTTC+TGG | 0.136711 | 3:-13235737 | None:intergenic |
| AACTCCCTCCAAATTATTCT+TGG | 0.252574 | 3:-13235653 | None:intergenic |
| TCTTGTCACATTGTTCATTC+TGG | 0.267855 | 3:+13235937 | MsG0380012244.01.T01:three_prime_UTR |
| TGAAGATGCCAAGAATAATT+TGG | 0.284270 | 3:+13235645 | MsG0380012244.01.T01:CDS |
| AAAACGAACAAATTATGATT+TGG | 0.313283 | 3:-13235986 | None:intergenic |
| TCAACCGGAATGGATGTAAA+TGG | 0.314700 | 3:-13234271 | None:intergenic |
| CATCAAGACCACCAAATGTT+TGG | 0.317863 | 3:+13235446 | MsG0380012244.01.T01:CDS |
| ATTTGTTCTTTATTTACATT+TGG | 0.343120 | 3:+13235823 | MsG0380012244.01.T01:three_prime_UTR |
| GGCTTTCTAGCCCAAACATT+TGG | 0.344063 | 3:-13235457 | None:intergenic |
| CACTACCATCTCCGACAAAT+TGG | 0.356266 | 3:+13235526 | MsG0380012244.01.T01:CDS |
| CAATCAATTGCATTCTTTAG+TGG | 0.360817 | 3:-13235421 | None:intergenic |
| TAACATGGCTGGAGTAATTA+AGG | 0.366124 | 3:+13234167 | None:intergenic |
| CAGCCTCCAGCAAAATTTAA+CGG | 0.370197 | 3:+13235604 | MsG0380012244.01.T01:CDS |
| ATTCTCTTCATTTGTACAAA+AGG | 0.380051 | 3:-13236012 | None:intergenic |
| ACATCCATTTACATCCATTC+CGG | 0.388570 | 3:+13234267 | MsG0380012244.01.T01:CDS |
| CACTAAAGAATGCAATTGAT+TGG | 0.393700 | 3:+13235422 | MsG0380012244.01.T01:CDS |
| GTTCCAGAAATAGCTTGAAA+TGG | 0.396395 | 3:+13235734 | MsG0380012244.01.T01:three_prime_UTR |
| ATTAAGGTCGTTGCTATCTC+TGG | 0.409498 | 3:+13234183 | MsG0380012244.01.T01:CDS |
| CGAAATGCTTCAACTTCAGC+TGG | 0.409631 | 3:-13234603 | None:intergenic |
| GCATTTACCCTTCAACTTCA+AGG | 0.415648 | 3:+13235691 | MsG0380012244.01.T01:CDS |
| GAGACAGAATAATTATATTC+AGG | 0.417383 | 3:-13234666 | None:intergenic |
| ATCAAGACCACCAAATGTTT+GGG | 0.428497 | 3:+13235447 | MsG0380012244.01.T01:CDS |
| GAATATAATTATTCTGTCTC+AGG | 0.442769 | 3:+13234669 | MsG0380012244.01.T01:CDS |
| TTGAAGGGTAAATGCCTTCA+AGG | 0.460642 | 3:-13235683 | None:intergenic |
| AACACCGGTCTCATCCGTTC+TGG | 0.467180 | 3:+13234228 | MsG0380012244.01.T01:CDS |
| ACTAAAGAATGCAATTGATT+GGG | 0.467662 | 3:+13235423 | MsG0380012244.01.T01:CDS |
| TGTTCATTCTGGTATTACAT+AGG | 0.484792 | 3:+13235948 | MsG0380012244.01.T01:three_prime_UTR |
| AAATTATGATTTGGAACGAC+CGG | 0.488555 | 3:-13235977 | None:intergenic |
| TTTCTAGCCCAAACATTTGG+TGG | 0.496551 | 3:-13235454 | None:intergenic |
| TGTAAATGGATGTAAGAAGT+AGG | 0.525606 | 3:-13234257 | None:intergenic |
| TGATTAACAAATAACATGGC+TGG | 0.529188 | 3:+13234156 | None:intergenic |
| CTGCTCTCATTCAACCGGAA+TGG | 0.535184 | 3:-13234281 | None:intergenic |
| CCAGCAAAATTTAACGGTGA+TGG | 0.537439 | 3:+13235610 | MsG0380012244.01.T01:CDS |
| CGACGAAAACTCCAATTTGT+CGG | 0.538450 | 3:-13235537 | None:intergenic |
| GCTGCAATAGTGAGTGTTGG+AGG | 0.549316 | 3:+13235481 | MsG0380012244.01.T01:CDS |
| AAACTCCAATTTGTCGGAGA+TGG | 0.555469 | 3:-13235531 | None:intergenic |
| AACACTGATCTTGAGACAGA+AGG | 0.569151 | 3:+13234573 | MsG0380012244.01.T01:CDS |
| CCGGTCTCATCCGTTCTGGT+TGG | 0.571922 | 3:+13234232 | MsG0380012244.01.T01:CDS |
| AGAACGGATGAGACCGGTGT+TGG | 0.572988 | 3:-13234226 | None:intergenic |
| CCAACACTCACTATTGCAGC+AGG | 0.576426 | 3:-13235478 | None:intergenic |
| TCAAGATCAGTGTTCAACAT+TGG | 0.577534 | 3:-13234564 | None:intergenic |
| CGAAAAGCTTCTTCCAACAC+CGG | 0.586905 | 3:+13234213 | MsG0380012244.01.T01:CDS |
| ACACTGATCTTGAGACAGAA+GGG | 0.588342 | 3:+13234574 | MsG0380012244.01.T01:CDS |
| GTGAGTGTTGGAGGAGGACA+CGG | 0.590742 | 3:+13235490 | MsG0380012244.01.T01:CDS |
| CCAACCAGAACGGATGAGAC+CGG | 0.599652 | 3:-13234232 | None:intergenic |
| AGATGCCAAGAATAATTTGG+AGG | 0.599992 | 3:+13235648 | MsG0380012244.01.T01:CDS |
| GATGCCAAGAATAATTTGGA+GGG | 0.601338 | 3:+13235649 | MsG0380012244.01.T01:CDS |
| CCTGCTGCAATAGTGAGTGT+TGG | 0.618578 | 3:+13235478 | MsG0380012244.01.T01:CDS |
| GAAGTAGGAACCAACCAGAA+CGG | 0.644564 | 3:-13234242 | None:intergenic |
| GCAATAGTGAGTGTTGGAGG+AGG | 0.656596 | 3:+13235484 | MsG0380012244.01.T01:CDS |
| ATAACATTGTAAATCAAACA+AGG | 0.698016 | 3:-13235872 | None:intergenic |
| TTGTAAATCAAACAAGGACA+AGG | 0.707064 | 3:-13235866 | None:intergenic |
| AGTGTTGGAGGAGGACACGG+TGG | 0.780760 | 3:+13235493 | MsG0380012244.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATATGTTGAAATTTAAAT+GGG | + | Chr3:13235044-13235063 | MsG0380012244.01.T01:intron | 10.0% |
| !!! | TTTACTTATATATTTCATTT+TGG | - | Chr3:13234825-13234844 | None:intergenic | 10.0% |
| !! | CTAATATGTTGAAATTTAAA+TGG | + | Chr3:13235043-13235062 | MsG0380012244.01.T01:intron | 15.0% |
| !! | TGATAAAAAAAATCAATACT+TGG | - | Chr3:13235266-13235285 | None:intergenic | 15.0% |
| !!! | ATTTGTTCTTTATTTACATT+TGG | + | Chr3:13235823-13235842 | MsG0380012244.01.T01:three_prime_UTR | 15.0% |
| !!! | TAAATTTTACCAATTAAAGA+TGG | + | Chr3:13235113-13235132 | MsG0380012244.01.T01:intron | 15.0% |
| !! | AAAACGAACAAATTATGATT+TGG | - | Chr3:13235989-13236008 | None:intergenic | 20.0% |
| !! | ATAACATTGTAAATCAAACA+AGG | - | Chr3:13235875-13235894 | None:intergenic | 20.0% |
| !! | TAACAACAAATTCTCTAATT+CGG | - | Chr3:13235177-13235196 | None:intergenic | 20.0% |
| !! | TGTTTGTGTTTAATTAAAGA+TGG | + | Chr3:13235138-13235157 | MsG0380012244.01.T01:intron | 20.0% |
| !! | TTATAAAGTGAATTAGAGAA+TGG | + | Chr3:13235322-13235341 | MsG0380012244.01.T01:intron | 20.0% |
| !!! | ATTTTAATTATTATCGACGA+GGG | + | Chr3:13234473-13234492 | MsG0380012244.01.T01:intron | 20.0% |
| !!! | TTCTCAACATGTTATTTTTT+TGG | + | Chr3:13235001-13235020 | MsG0380012244.01.T01:intron | 20.0% |
| ! | ACTAAAGAATGCAATTGATT+GGG | + | Chr3:13235423-13235442 | MsG0380012244.01.T01:CDS | 25.0% |
| ! | ATAATTTAGACCAAATGCAT+TGG | - | Chr3:13234863-13234882 | None:intergenic | 25.0% |
| ! | ATTCTCTTCATTTGTACAAA+AGG | - | Chr3:13236015-13236034 | None:intergenic | 25.0% |
| ! | GAATATAATTATTCTGTCTC+AGG | + | Chr3:13234669-13234688 | MsG0380012244.01.T01:CDS | 25.0% |
| ! | GAGACAGAATAATTATATTC+AGG | - | Chr3:13234669-13234688 | None:intergenic | 25.0% |
| !! | AACAACACTTTTATTGTCAA+AGG | - | Chr3:13234741-13234760 | None:intergenic | 25.0% |
| !!! | GATTTTAATTATTATCGACG+AGG | + | Chr3:13234472-13234491 | MsG0380012244.01.T01:intron | 25.0% |
| AAACGCGTTTAAGAAAAACT+CGG | - | Chr3:13235584-13235603 | None:intergenic | 30.0% | |
| AAGAAAACATCATGTTCATG+TGG | + | Chr3:13234693-13234712 | MsG0380012244.01.T01:intron | 30.0% | |
| ACAAACACACCATCTTTAAT+TGG | - | Chr3:13235125-13235144 | None:intergenic | 30.0% | |
| AGAAAACATCATGTTCATGT+GGG | + | Chr3:13234694-13234713 | MsG0380012244.01.T01:intron | 30.0% | |
| CAATCAATTGCATTCTTTAG+TGG | - | Chr3:13235424-13235443 | None:intergenic | 30.0% | |
| CACTAAAGAATGCAATTGAT+TGG | + | Chr3:13235422-13235441 | MsG0380012244.01.T01:CDS | 30.0% | |
| GTATAAAAGTCCAATGCATT+TGG | + | Chr3:13234850-13234869 | MsG0380012244.01.T01:intron | 30.0% | |
| TGAAGATGCCAAGAATAATT+TGG | + | Chr3:13235645-13235664 | MsG0380012244.01.T01:CDS | 30.0% | |
| TGGGTCATACTAAATTTATG+TGG | + | Chr3:13235063-13235082 | MsG0380012244.01.T01:intron | 30.0% | |
| TGTAAATGGATGTAAGAAGT+AGG | - | Chr3:13234260-13234279 | None:intergenic | 30.0% | |
| TGTTCATTCTGGTATTACAT+AGG | + | Chr3:13235948-13235967 | MsG0380012244.01.T01:three_prime_UTR | 30.0% | |
| TGTTGAAAAGAGTTTAGTAG+AGG | - | Chr3:13234952-13234971 | None:intergenic | 30.0% | |
| TTGTAAATCAAACAAGGACA+AGG | - | Chr3:13235869-13235888 | None:intergenic | 30.0% | |
| ! | AAATTATGATTTGGAACGAC+CGG | - | Chr3:13235980-13235999 | None:intergenic | 30.0% |
| ! | AATTTTTGCCTTGAAGTTGA+AGG | - | Chr3:13235702-13235721 | None:intergenic | 30.0% |
| ! | ATTCCATTTCAAGCTATTTC+TGG | - | Chr3:13235740-13235759 | None:intergenic | 30.0% |
| ! | ATTTTTGCCTTGAAGTTGAA+GGG | - | Chr3:13235701-13235720 | None:intergenic | 30.0% |
| ! | CTTCAGTCGTGATTTTTATT+CGG | + | Chr3:13235788-13235807 | MsG0380012244.01.T01:three_prime_UTR | 30.0% |
| ! | GTGAATTAGAGAATGGTTTT+TGG | + | Chr3:13235329-13235348 | MsG0380012244.01.T01:intron | 30.0% |
| !! | GTTTACGTGCATTGATTAAT+TGG | + | Chr3:13234437-13234456 | MsG0380012244.01.T01:intron | 30.0% |
| !!! | GGTTTTTGGAATATTTGAGA+CGG | + | Chr3:13235343-13235362 | MsG0380012244.01.T01:intron | 30.0% |
| AAAACATCATGTTCATGTGG+GGG | + | Chr3:13234696-13234715 | MsG0380012244.01.T01:intron | 35.0% | |
| AACGCGTTTAAGAAAAACTC+GGG | - | Chr3:13235583-13235602 | None:intergenic | 35.0% | |
| AACTCCCTCCAAATTATTCT+TGG | - | Chr3:13235656-13235675 | None:intergenic | 35.0% | |
| ACATCCATTTACATCCATTC+CGG | + | Chr3:13234267-13234286 | MsG0380012244.01.T01:CDS | 35.0% | |
| AGATGCCAAGAATAATTTGG+AGG | + | Chr3:13235648-13235667 | MsG0380012244.01.T01:CDS | 35.0% | |
| ATCAAGACCACCAAATGTTT+GGG | + | Chr3:13235447-13235466 | MsG0380012244.01.T01:CDS | 35.0% | |
| GAAAACATCATGTTCATGTG+GGG | + | Chr3:13234695-13234714 | MsG0380012244.01.T01:intron | 35.0% | |
| GATGCCAAGAATAATTTGGA+GGG | + | Chr3:13235649-13235668 | MsG0380012244.01.T01:CDS | 35.0% | |
| GTTCCAGAAATAGCTTGAAA+TGG | + | Chr3:13235734-13235753 | MsG0380012244.01.T01:three_prime_UTR | 35.0% | |
| TCAAGATCAGTGTTCAACAT+TGG | - | Chr3:13234567-13234586 | None:intergenic | 35.0% | |
| TCTTGTCACATTGTTCATTC+TGG | + | Chr3:13235937-13235956 | MsG0380012244.01.T01:three_prime_UTR | 35.0% | |
| ! | GGTATTACATAGGTCTTTTC+CGG | + | Chr3:13235958-13235977 | MsG0380012244.01.T01:three_prime_UTR | 35.0% |
| AAACTCCAATTTGTCGGAGA+TGG | - | Chr3:13235534-13235553 | None:intergenic | 40.0% | |
| AACACTGATCTTGAGACAGA+AGG | + | Chr3:13234573-13234592 | MsG0380012244.01.T01:CDS | 40.0% | |
| ACACTGATCTTGAGACAGAA+GGG | + | Chr3:13234574-13234593 | MsG0380012244.01.T01:CDS | 40.0% | |
| ATTAAGGTCGTTGCTATCTC+TGG | + | Chr3:13234183-13234202 | MsG0380012244.01.T01:CDS | 40.0% | |
| CAGCCTCCAGCAAAATTTAA+CGG | + | Chr3:13235604-13235623 | MsG0380012244.01.T01:CDS | 40.0% | |
| CATCAAGACCACCAAATGTT+TGG | + | Chr3:13235446-13235465 | MsG0380012244.01.T01:CDS | 40.0% | |
| CCAGCAAAATTTAACGGTGA+TGG | + | Chr3:13235610-13235629 | MsG0380012244.01.T01:CDS | 40.0% | |
| CGACGAAAACTCCAATTTGT+CGG | - | Chr3:13235540-13235559 | None:intergenic | 40.0% | |
| GATTGAGCTGAGCAAAAATG+TGG | + | Chr3:13234500-13234519 | MsG0380012244.01.T01:CDS | 40.0% | |
| GCATTTACCCTTCAACTTCA+AGG | + | Chr3:13235691-13235710 | MsG0380012244.01.T01:CDS | 40.0% | |
| TCAACCGGAATGGATGTAAA+TGG | - | Chr3:13234274-13234293 | None:intergenic | 40.0% | |
| TTGAAGGGTAAATGCCTTCA+AGG | - | Chr3:13235686-13235705 | None:intergenic | 40.0% | |
| ! | CCATCACCGTTAAATTTTGC+TGG | - | Chr3:13235613-13235632 | None:intergenic | 40.0% |
| ! | TCACCGTTAAATTTTGCTGG+AGG | - | Chr3:13235610-13235629 | None:intergenic | 40.0% |
| ! | TTTCTAGCCCAAACATTTGG+TGG | - | Chr3:13235457-13235476 | None:intergenic | 40.0% |
| !! | GTGTTGTTTGATGTGTGTCT+TGG | + | Chr3:13234753-13234772 | MsG0380012244.01.T01:intron | 40.0% |
| CACTACCATCTCCGACAAAT+TGG | + | Chr3:13235526-13235545 | MsG0380012244.01.T01:CDS | 45.0% | |
| CGAAAAGCTTCTTCCAACAC+CGG | + | Chr3:13234213-13234232 | MsG0380012244.01.T01:CDS | 45.0% | |
| CGAAATGCTTCAACTTCAGC+TGG | - | Chr3:13234606-13234625 | None:intergenic | 45.0% | |
| CTGAGCAAAAATGTGGTCGA+GGG | + | Chr3:13234507-13234526 | MsG0380012244.01.T01:CDS | 45.0% | |
| GAAGTAGGAACCAACCAGAA+CGG | - | Chr3:13234245-13234264 | None:intergenic | 45.0% | |
| TAACGACGAAATTGACGTGC+TGG | + | Chr3:13234349-13234368 | MsG0380012244.01.T01:intron | 45.0% | |
| ! | GGCTTTCTAGCCCAAACATT+TGG | - | Chr3:13235460-13235479 | None:intergenic | 45.0% |
| ! | GGGAGTTCTTTTGTCCTTGA+AGG | + | Chr3:13235669-13235688 | MsG0380012244.01.T01:CDS | 45.0% |
| CCAACACTCACTATTGCAGC+AGG | - | Chr3:13235481-13235500 | None:intergenic | 50.0% | |
| CCTGCTGCAATAGTGAGTGT+TGG | + | Chr3:13235478-13235497 | MsG0380012244.01.T01:CDS | 50.0% | |
| CTGCTCTCATTCAACCGGAA+TGG | - | Chr3:13234284-13234303 | None:intergenic | 50.0% | |
| GCACACTGCTCTCATTCAAC+CGG | - | Chr3:13234289-13234308 | None:intergenic | 50.0% | |
| GCTGAGCAAAAATGTGGTCG+AGG | + | Chr3:13234506-13234525 | MsG0380012244.01.T01:CDS | 50.0% | |
| !! | GCAATAGTGAGTGTTGGAGG+AGG | + | Chr3:13235484-13235503 | MsG0380012244.01.T01:CDS | 50.0% |
| !! | GCTGCAATAGTGAGTGTTGG+AGG | + | Chr3:13235481-13235500 | MsG0380012244.01.T01:CDS | 50.0% |
| AACACCGGTCTCATCCGTTC+TGG | + | Chr3:13234228-13234247 | MsG0380012244.01.T01:CDS | 55.0% | |
| AGAACGGATGAGACCGGTGT+TGG | - | Chr3:13234229-13234248 | None:intergenic | 55.0% | |
| CCAACCAGAACGGATGAGAC+CGG | - | Chr3:13234235-13234254 | None:intergenic | 55.0% | |
| !! | GTGAGTGTTGGAGGAGGACA+CGG | + | Chr3:13235490-13235509 | MsG0380012244.01.T01:CDS | 55.0% |
| CCGGTCTCATCCGTTCTGGT+TGG | + | Chr3:13234232-13234251 | MsG0380012244.01.T01:CDS | 60.0% | |
| ! | AGTGTTGGAGGAGGACACGG+TGG | + | Chr3:13235493-13235512 | MsG0380012244.01.T01:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 13234171 | 13236044 | 13234171 | ID=MsG0380012244.01;Name=MsG0380012244.01 |
| Chr3 | mRNA | 13234171 | 13236044 | 13234171 | ID=MsG0380012244.01.T01;Parent=MsG0380012244.01;Name=MsG0380012244.01.T01;_AED=0.38;_eAED=0.41;_QI=0|0.5|0.66|1|1|1|3|321|204 |
| Chr3 | exon | 13234171 | 13234288 | 13234171 | ID=MsG0380012244.01.T01:exon:468;Parent=MsG0380012244.01.T01 |
| Chr3 | exon | 13234499 | 13234690 | 13234499 | ID=MsG0380012244.01.T01:exon:469;Parent=MsG0380012244.01.T01 |
| Chr3 | exon | 13235419 | 13236044 | 13235419 | ID=MsG0380012244.01.T01:exon:470;Parent=MsG0380012244.01.T01 |
| Chr3 | CDS | 13234171 | 13234288 | 13234171 | ID=MsG0380012244.01.T01:cds;Parent=MsG0380012244.01.T01 |
| Chr3 | CDS | 13234499 | 13234690 | 13234499 | ID=MsG0380012244.01.T01:cds;Parent=MsG0380012244.01.T01 |
| Chr3 | CDS | 13235419 | 13235723 | 13235419 | ID=MsG0380012244.01.T01:cds;Parent=MsG0380012244.01.T01 |
| Chr3 | three_prime_UTR | 13235724 | 13236044 | 13235724 | ID=MsG0380012244.01.T01:three_prime_utr;Parent=MsG0380012244.01.T01 |
| Gene Sequence |
| Protein sequence |
