AlfalfaGEDB | MsG0380013936.01

M. sativa cultivar ZhongmuNo.1 / MsG0380013936.01

KEGG: K03043
GO: GO:0003677 GO:0003899 GO:0006351
PFAM: PF00562 PF04565

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380013936.01.T01	AWW91873.1	99.81	527	1	0	19	545	332	858	0	1083

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380013936.01.T01	Q0ZJ28	92.979	527	37	0	19	545	327	853	0	1021

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380013936.01.T01	A0A2Z4KH34	99.810	527	1	0	19	545	332	858	0.0	1083

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048691.01	MsG0380013936.01	0.815537	8.786794e-52	6.074629e-49
MsG0380013888.01	MsG0380013936.01	0.814004	1.921393e-51	1.274147e-48
MsG0380013918.01	MsG0380013936.01	0.805584	1.243956e-49	6.605987e-47
MsG0380013926.01	MsG0380013936.01	0.805582	1.245319e-49	6.612820e-47
MsG0380013936.01	MsG0380013959.01	0.800235	1.585338e-48	7.343663e-46
MsG0380013936.01	MsG0380013961.01	0.808673	2.758907e-50	1.587138e-47
MsG0380013936.01	MsG0380013962.01	0.804209	2.410435e-49	1.235509e-46
MsG0380013936.01	MsG0380013983.01	0.814119	1.811679e-51	1.205151e-48
MsG0380013936.01	MsG0380014027.01	0.836962	6.881472e-57	8.810162e-54
MsG0380013936.01	MsG0380014045.01	0.849700	2.732103e-60	5.223654e-57

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380013936.01.T01	MTR_4g051130	99.051	527	5	0	19	545	314	840	0.0	1070
MsG0380013936.01.T01	MTR_0002s0510	75.881	539	112	6	19	545	379	911	0.0	817
MsG0380013936.01.T01	MTR_1g058960	80.795	151	7	1	395	545	58	186	2.33e-76	239
MsG0380013936.01.T01	MTR_0265s0030	100.000	108	0	0	438	545	1	108	8.84e-71	222
MsG0380013936.01.T01	MTR_7g077330	96.154	78	3	0	312	389	1	78	1.31e-47	160
MsG0380013936.01.T01	MTR_4g055180	94.915	59	3	0	66	124	23	81	7.78e-33	122
MsG0380013936.01.T01	MTR_2g040120	66.667	72	24	0	76	147	9	80	3.15e-24	96.7
MsG0380013936.01.T01	MTR_4g039510	75.000	60	15	0	283	342	35	94	1.64e-23	95.5
MsG0380013936.01.T01	MTR_0552s0020	100.000	42	0	0	240	281	1	42	5.91e-21	87.4
MsG0380013936.01.T01	MTR_4g021033	100.000	42	0	0	240	281	1	42	5.91e-21	87.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380013936.01.T01	ATCG00190	89.414	529	54	1	19	545	327	855	0.0	986

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Find 120 sgRNAs with CRISPR-Local

Find 153 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTACCTATAGGTGGTA+GGG	0.530153	3:+48463814	MsG0380013936.01.T01:CDS
AAACTACCTATAGGTGGTAG+GGG	0.618823	3:+48463815	MsG0380013936.01.T01:CDS
AAAGTAGGTGATAAAGTGGC+CGG	0.529519	3:+48463932	MsG0380013936.01.T01:CDS
AAATTGAGTTATTTGGGTCC+TGG	0.453699	3:+48462663	MsG0380013936.01.T01:CDS
AACGATCTTTCCTGCGTGTT+CGG	0.330632	3:-48463231	None:intergenic
AACTATTTGGGTCAATGGAT+TGG	0.429624	3:-48462631	None:intergenic
AACTGGATTGGAACGCCAAG+TGG	0.615266	3:+48463181	MsG0380013936.01.T01:CDS
AAGAATTTCTAACTATTGCA+TGG	0.481440	3:+48462997	MsG0380013936.01.T01:CDS
AAGTAGAGATGAATACTATA+TGG	0.431841	3:+48462902	MsG0380013936.01.T01:CDS
AAGTAGGTGATAAAGTGGCC+GGG	0.597954	3:+48463933	MsG0380013936.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGATTATTACGAGCTATACT+TGG	+	Chr3:48463758-48463777	MsG0380013936.01.T01:CDS	30.0%
ATAATTCGAGGAACTATATC+TGG	+	Chr3:48462492-48462511	MsG0380013936.01.T01:CDS	30.0%
ATTAGTAGCTTATATGCCAT+GGG	+	Chr3:48463454-48463473	MsG0380013936.01.T01:CDS	30.0%
CAAAAATGGAATTGTGATTC+TGG	+	Chr3:48463652-48463671	MsG0380013936.01.T01:CDS	30.0%
CAGAAACGTGAAATTAAAGT+AGG	+	Chr3:48463917-48463936	MsG0380013936.01.T01:CDS	30.0%
CTCCGAAATTTAGACAAAAA+TGG	+	Chr3:48463638-48463657	MsG0380013936.01.T01:CDS	30.0%
GAGTCAACAATCGATTATAA+TGG	-	Chr3:48462455-48462474	None:intergenic	30.0%
GATTATTACGAGCTATACTT+GGG	+	Chr3:48463759-48463778	MsG0380013936.01.T01:CDS	30.0%
GATTCATAAGTGGTTGTTAA+TGG	-	Chr3:48462570-48462589	None:intergenic	30.0%
GGGAGAAAATTGAGTTATTT+GGG	+	Chr3:48462657-48462676	MsG0380013936.01.T01:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	48462414	48464054	48462414	ID=MsG0380013936.01;Name=MsG0380013936.01
Chr3	mRNA	48462414	48464054	48462414	ID=MsG0380013936.01.T01;Parent=MsG0380013936.01;Name=MsG0380013936.01.T01;_AED=0.50;_eAED=0.50;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|546
Chr3	exon	48462414	48464054	48462414	ID=MsG0380013936.01.T01:exon:8503;Parent=MsG0380013936.01.T01
Chr3	CDS	48462414	48464054	48462414	ID=MsG0380013936.01.T01:cds;Parent=MsG0380013936.01.T01

Gene Sequence

>MsG0380013936.01.T01

ATGCAACGATTAGTTAGGATAAGTTTTTTATGGATATTCCATTATAATCGATTGTTGACTCTCGTTCGTTTAGAAAATATAATTCGAGGAACTATATCTGGAGCAATTAGATATAAATTGATACCTACTCCTCAGAATTTAGTGACTTCAACTCCATTAACAACCACTTATGAATCGTTTTTTGGATTACACCCATTATCTCAAGTTTTAGATCGAACCAATCCATTGACCCAAATAGTTCATGGGAGAAAATTGAGTTATTTGGGTCCTGGAGGATTGACGGGGCGAACTGCTAGTTTTCGGATACGGGATATCCATCCTAGTCACTATGGACGCATTTGTCCAATTGACACCTCGGAAGGAATCAATGTAGGACTTATTGGATCCTTGGCAATTCACGCAAGGATTGGTCCTTGGGGGTCTATAGAAAGTCCGTTTTTTGAAATTTCTGAGAGATCAAAACGAATACGAATGCTTTATTTATCACCAAGTAGAGATGAATACTATATGGTAGCGACGGGAAATTTTTTAGCACTGAATCGAGGTATTCAGGAGGAGCAGATTGTTCCAGCTCGATACCGTCAAGAATTTCTAACTATTGCATGGGAACAGGTTCATCTTCGAAGTATTTTTCCCTTCCAATATTTTTCTATTGGAGCTTCCCTGATTCCTTTTATCGAGCATAATGATGCGAATCGAGCTTTAATGAGTTCTAATATGCAACGTCAAGCAGTTCCTCTTTCTCGGTCCGAAAAGTGCATTGTTGGAACTGGATTGGAACGCCAAGTGGCCTTAGATTCAGGAGTTCCCGCTATAGCCGAACACGCAGGAAAGATCGTTTATAACGATACTGACAAGATCATTTTATTTGGAAATGGGAATGCTCTAAGTATTCCATTAATTAGATATCAACGTTCCAACAAAAATACTTGCATGCATCAAAAATCCCAGGTTCATAAAGGTAAATGCGTAAAAAAGGGACAAATTTTAGCAGATGGTGCTGCTACTGTTGGCGGTGAACTCGCTTTGGGAAAAAACGTATTAGTAGCTTATATGCCATGGGAAGGTTACAATTCTGAAGATGCTGTACTCATTAGTGAACGTCTGGTCTATGAAGATATTTATACTTCTTTTCACATACGTAAATATGAAATTCAGACTCATGTGACAAGCCATGGTCCTGAAAGAATCACTAATAAAATTCCACATCTAGAAGCCCATTTACTCCGAAATTTAGACAAAAATGGAATTGTGATTCTGGGATCTTGGGTAGAAACAGGGGATATTTTAGTGGGTAAATTAACGCCTCAAATGGCGAAAGAATCCTCCTATGCTCCGGAAGATAGATTATTACGAGCTATACTTGGGATTCAGGTATCGACCTCAAAGGAAACTTGTCTAAAACTACCTATAGGTGGTAGGGGCCGAGTTATTGATGTGAGATGGATCCAAAAAAAAGCAGGTTCTAGCTATAATCCAGAAACGATTCATATATATATTTCACAGAAACGTGAAATTAAAGTAGGTGATAAAGTGGCCGGGAGACATGGAAATAAAGGTATCGTTTCAAAGATTTTGTCTAGACAGGATATGCCTTATTTGCAAGATGGAAGACCCGTTGATATGGTCTTCAACCATTAG

Protein sequence

>MsG0380013936.01.T01

MQRLVRISFLWIFHYNRLLTLVRLENIIRGTISGAIRYKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIGPWGSIESPFFEISERSKRIRMLYLSPSRDEYYMVATGNFLALNRGIQEEQIVPARYRQEFLTIAWEQVHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGTGLERQVALDSGVPAIAEHAGKIVYNDTDKIILFGNGNALSIPLIRYQRSNKNTCMHQKSQVHKGKCVKKGQILADGAATVGGELALGKNVLVAYMPWEGYNSEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSHGPERITNKIPHLEAHLLRNLDKNGIVILGSWVETGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWIQKKAGSSYNPETIHIYISQKREIKVGDKVAGRHGNKGIVSKILSRQDMPYLQDGRPVDMVFNH*