Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380013936.01.T01 | AWW91873.1 | 99.81 | 527 | 1 | 0 | 19 | 545 | 332 | 858 | 0 | 1083 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380013936.01.T01 | Q0ZJ28 | 92.979 | 527 | 37 | 0 | 19 | 545 | 327 | 853 | 0 | 1021 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380013936.01.T01 | A0A2Z4KH34 | 99.810 | 527 | 1 | 0 | 19 | 545 | 332 | 858 | 0.0 | 1083 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048691.01 | MsG0380013936.01 | 0.815537 | 8.786794e-52 | 6.074629e-49 |
| MsG0380013888.01 | MsG0380013936.01 | 0.814004 | 1.921393e-51 | 1.274147e-48 |
| MsG0380013918.01 | MsG0380013936.01 | 0.805584 | 1.243956e-49 | 6.605987e-47 |
| MsG0380013926.01 | MsG0380013936.01 | 0.805582 | 1.245319e-49 | 6.612820e-47 |
| MsG0380013936.01 | MsG0380013959.01 | 0.800235 | 1.585338e-48 | 7.343663e-46 |
| MsG0380013936.01 | MsG0380013961.01 | 0.808673 | 2.758907e-50 | 1.587138e-47 |
| MsG0380013936.01 | MsG0380013962.01 | 0.804209 | 2.410435e-49 | 1.235509e-46 |
| MsG0380013936.01 | MsG0380013983.01 | 0.814119 | 1.811679e-51 | 1.205151e-48 |
| MsG0380013936.01 | MsG0380014027.01 | 0.836962 | 6.881472e-57 | 8.810162e-54 |
| MsG0380013936.01 | MsG0380014045.01 | 0.849700 | 2.732103e-60 | 5.223654e-57 |
| MsG0380013936.01 | MsG0380014046.01 | 0.857436 | 1.633918e-62 | 4.032418e-59 |
| MsG0380013936.01 | MsG0380014054.01 | 0.902173 | 1.270678e-78 | 1.777087e-74 |
| MsG0380013936.01 | MsG0780040316.01 | 0.810154 | 1.327068e-50 | 7.939989e-48 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380013936.01.T01 | MTR_4g051130 | 99.051 | 527 | 5 | 0 | 19 | 545 | 314 | 840 | 0.0 | 1070 |
| MsG0380013936.01.T01 | MTR_0002s0510 | 75.881 | 539 | 112 | 6 | 19 | 545 | 379 | 911 | 0.0 | 817 |
| MsG0380013936.01.T01 | MTR_1g058960 | 80.795 | 151 | 7 | 1 | 395 | 545 | 58 | 186 | 2.33e-76 | 239 |
| MsG0380013936.01.T01 | MTR_0265s0030 | 100.000 | 108 | 0 | 0 | 438 | 545 | 1 | 108 | 8.84e-71 | 222 |
| MsG0380013936.01.T01 | MTR_7g077330 | 96.154 | 78 | 3 | 0 | 312 | 389 | 1 | 78 | 1.31e-47 | 160 |
| MsG0380013936.01.T01 | MTR_4g055180 | 94.915 | 59 | 3 | 0 | 66 | 124 | 23 | 81 | 7.78e-33 | 122 |
| MsG0380013936.01.T01 | MTR_2g040120 | 66.667 | 72 | 24 | 0 | 76 | 147 | 9 | 80 | 3.15e-24 | 96.7 |
| MsG0380013936.01.T01 | MTR_4g039510 | 75.000 | 60 | 15 | 0 | 283 | 342 | 35 | 94 | 1.64e-23 | 95.5 |
| MsG0380013936.01.T01 | MTR_0552s0020 | 100.000 | 42 | 0 | 0 | 240 | 281 | 1 | 42 | 5.91e-21 | 87.4 |
| MsG0380013936.01.T01 | MTR_4g021033 | 100.000 | 42 | 0 | 0 | 240 | 281 | 1 | 42 | 5.91e-21 | 87.4 |
| MsG0380013936.01.T01 | MTR_6g042920 | 85.714 | 42 | 6 | 0 | 378 | 419 | 73 | 114 | 3.64e-17 | 79.0 |
| MsG0380013936.01.T01 | MTR_5g085695 | 72.727 | 44 | 12 | 0 | 327 | 370 | 2 | 45 | 3.80e-15 | 70.5 |
| MsG0380013936.01.T01 | MTR_3g105990 | 24.042 | 287 | 167 | 11 | 274 | 545 | 724 | 974 | 9.13e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380013936.01.T01 | ATCG00190 | 89.414 | 529 | 54 | 1 | 19 | 545 | 327 | 855 | 0.0 | 986 |
Find 120 sgRNAs with CRISPR-Local
Find 153 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGGAGAAAATTGAGTTATT+TGG | 0.135693 | 3:+48462656 | MsG0380013936.01.T01:CDS |
| TGTCTAAATTTCGGAGTAAA+TGG | 0.137285 | 3:-48463631 | None:intergenic |
| ATATATATATGAATCGTTTC+TGG | 0.228166 | 3:-48463890 | None:intergenic |
| GAACGTTGATATCTAATTAA+TGG | 0.244746 | 3:-48463308 | None:intergenic |
| GGAATCAATGTAGGACTTAT+TGG | 0.263649 | 3:+48462774 | MsG0380013936.01.T01:CDS |
| ACGAGCTATACTTGGGATTC+AGG | 0.269809 | 3:+48463766 | MsG0380013936.01.T01:CDS |
| AGCACTGAATCGAGGTATTC+AGG | 0.270037 | 3:+48462944 | MsG0380013936.01.T01:CDS |
| GATTCATAAGTGGTTGTTAA+TGG | 0.270524 | 3:-48462567 | None:intergenic |
| CGATCTAAAACTTGAGATAA+TGG | 0.281648 | 3:-48462606 | None:intergenic |
| GATATGGTCTTCAACCATTA+GGG | 0.291233 | 3:+48464034 | MsG0380013936.01.T01:CDS |
| GGTCTTCCATCTTGCAAATA+AGG | 0.291965 | 3:-48464007 | None:intergenic |
| ATAATTCGAGGAACTATATC+TGG | 0.305120 | 3:+48462492 | MsG0380013936.01.T01:CDS |
| GCATCATTATGCTCGATAAA+AGG | 0.305503 | 3:-48463083 | None:intergenic |
| GGGAGAAAATTGAGTTATTT+GGG | 0.307341 | 3:+48462657 | MsG0380013936.01.T01:CDS |
| CGCCAAGTGGCCTTAGATTC+AGG | 0.326928 | 3:+48463194 | MsG0380013936.01.T01:CDS |
| TGTTGGCGGTGAACTCGCTT+TGG | 0.329325 | 3:+48463421 | MsG0380013936.01.T01:CDS |
| CGCATTTACCTTTATGAACC+TGG | 0.329782 | 3:-48463361 | None:intergenic |
| AACGATCTTTCCTGCGTGTT+CGG | 0.330632 | 3:-48463231 | None:intergenic |
| TGATATGGTCTTCAACCATT+AGG | 0.330942 | 3:+48464033 | MsG0380013936.01.T01:CDS |
| TCACGCAAGGATTGGTCCTT+GGG | 0.341088 | 3:+48462809 | MsG0380013936.01.T01:CDS |
| GTCAAGCAGTTCCTCTTTCT+CGG | 0.344262 | 3:+48463138 | MsG0380013936.01.T01:CDS |
| CTGGGATCTTGGGTAGAAAC+AGG | 0.344385 | 3:+48463671 | MsG0380013936.01.T01:CDS |
| CCATGAACTATTTGGGTCAA+TGG | 0.354074 | 3:-48462636 | None:intergenic |
| CGGTCCGAAAAGTGCATTGT+TGG | 0.359288 | 3:+48463158 | MsG0380013936.01.T01:CDS |
| AGCGGGAACTCCTGAATCTA+AGG | 0.364603 | 3:-48463204 | None:intergenic |
| TATGCTCGATAAAAGGAATC+AGG | 0.367331 | 3:-48463076 | None:intergenic |
| TTGGGTCCTGGAGGATTGAC+GGG | 0.382208 | 3:+48462675 | MsG0380013936.01.T01:CDS |
| GTTGGCGGTGAACTCGCTTT+GGG | 0.396452 | 3:+48463422 | MsG0380013936.01.T01:CDS |
| AGATGGAAGACCCGTTGATA+TGG | 0.398344 | 3:+48464018 | MsG0380013936.01.T01:CDS |
| ATTCCTTCCGAGGTGTCAAT+TGG | 0.403361 | 3:-48462756 | None:intergenic |
| GAGTCAACAATCGATTATAA+TGG | 0.405221 | 3:-48462452 | None:intergenic |
| AGATTATTACGAGCTATACT+TGG | 0.409704 | 3:+48463758 | MsG0380013936.01.T01:CDS |
| TGTAGGACTTATTGGATCCT+TGG | 0.411030 | 3:+48462782 | MsG0380013936.01.T01:CDS |
| TCTAACTATTGCATGGGAAC+AGG | 0.414074 | 3:+48463004 | MsG0380013936.01.T01:CDS |
| GAAAAGTGCATTGTTGGAAC+TGG | 0.419529 | 3:+48463164 | MsG0380013936.01.T01:CDS |
| TTCACGCAAGGATTGGTCCT+TGG | 0.420745 | 3:+48462808 | MsG0380013936.01.T01:CDS |
| TTTGGGTCCTGGAGGATTGA+CGG | 0.423824 | 3:+48462674 | MsG0380013936.01.T01:CDS |
| GAATTGTGATTCTGGGATCT+TGG | 0.426630 | 3:+48463660 | MsG0380013936.01.T01:CDS |
| GTCTAAATTTCGGAGTAAAT+GGG | 0.428736 | 3:-48463630 | None:intergenic |
| AACTATTTGGGTCAATGGAT+TGG | 0.429624 | 3:-48462631 | None:intergenic |
| GCCGGGAGACATGGAAATAA+AGG | 0.429982 | 3:+48463950 | MsG0380013936.01.T01:CDS |
| CCATTGACCCAAATAGTTCA+TGG | 0.431227 | 3:+48462636 | MsG0380013936.01.T01:CDS |
| AAGTAGAGATGAATACTATA+TGG | 0.431841 | 3:+48462902 | MsG0380013936.01.T01:CDS |
| ACTTGTCTAAAACTACCTAT+AGG | 0.437083 | 3:+48463806 | MsG0380013936.01.T01:CDS |
| GAGGATTCTTTCGCCATTTG+AGG | 0.441108 | 3:-48463719 | None:intergenic |
| GATATCCATCCTAGTCACTA+TGG | 0.449002 | 3:+48462723 | MsG0380013936.01.T01:CDS |
| ACCTTTATTTCCATGTCTCC+CGG | 0.449391 | 3:-48463951 | None:intergenic |
| AAATTGAGTTATTTGGGTCC+TGG | 0.453699 | 3:+48462663 | MsG0380013936.01.T01:CDS |
| ACTCGGCCCCTACCACCTAT+AGG | 0.455800 | 3:-48463821 | None:intergenic |
| GCTCGTAATAATCTATCTTC+CGG | 0.462719 | 3:-48463749 | None:intergenic |
| GGGTAAATTAACGCCTCAAA+TGG | 0.467677 | 3:+48463706 | MsG0380013936.01.T01:CDS |
| GATCTAAAACTTGAGATAAT+GGG | 0.468332 | 3:-48462605 | None:intergenic |
| AGGGCATGCAACGATTAGTT+AGG | 0.476042 | 3:+48462409 | None:intergenic |
| AAGAATTTCTAACTATTGCA+TGG | 0.481440 | 3:+48462997 | MsG0380013936.01.T01:CDS |
| CCTGCGTGTTCGGCTATAGC+GGG | 0.483049 | 3:-48463221 | None:intergenic |
| CGTTTAGAAAATATAATTCG+AGG | 0.485783 | 3:+48462480 | MsG0380013936.01.T01:CDS |
| AATTGTGATTCTGGGATCTT+GGG | 0.486220 | 3:+48463661 | MsG0380013936.01.T01:CDS |
| TTGGCAATTCACGCAAGGAT+TGG | 0.498707 | 3:+48462801 | MsG0380013936.01.T01:CDS |
| GTGCATTGTTGGAACTGGAT+TGG | 0.504759 | 3:+48463169 | MsG0380013936.01.T01:CDS |
| CTCCTGAATCTAAGGCCACT+TGG | 0.506387 | 3:-48463196 | None:intergenic |
| TGTACTCATTAGTGAACGTC+TGG | 0.512500 | 3:+48463499 | MsG0380013936.01.T01:CDS |
| GTTCGCCCCGTCAATCCTCC+AGG | 0.515843 | 3:-48462681 | None:intergenic |
| GATATGCCTTATTTGCAAGA+TGG | 0.518600 | 3:+48464001 | MsG0380013936.01.T01:CDS |
| TATTAGTAGCTTATATGCCA+TGG | 0.519177 | 3:+48463453 | MsG0380013936.01.T01:CDS |
| CAGAAACGTGAAATTAAAGT+AGG | 0.520965 | 3:+48463917 | MsG0380013936.01.T01:CDS |
| ATATAGTATTCATCTCTACT+TGG | 0.523407 | 3:-48462900 | None:intergenic |
| TGGTTGAAGACCATATCAAC+GGG | 0.524338 | 3:-48464028 | None:intergenic |
| AAAGTAGGTGATAAAGTGGC+CGG | 0.529519 | 3:+48463932 | MsG0380013936.01.T01:CDS |
| AAAACTACCTATAGGTGGTA+GGG | 0.530153 | 3:+48463814 | MsG0380013936.01.T01:CDS |
| GCATTTACCTTTATGAACCT+GGG | 0.530323 | 3:-48463360 | None:intergenic |
| GCAGATGGTGCTGCTACTGT+TGG | 0.531919 | 3:+48463404 | MsG0380013936.01.T01:CDS |
| GATAAAGTGGCCGGGAGACA+TGG | 0.532845 | 3:+48463941 | MsG0380013936.01.T01:CDS |
| AATTCTTGACGGTATCGAGC+TGG | 0.536702 | 3:-48462981 | None:intergenic |
| TAAAACTACCTATAGGTGGT+AGG | 0.538804 | 3:+48463813 | MsG0380013936.01.T01:CDS |
| CAATAGTTAGAAATTCTTGA+CGG | 0.539101 | 3:-48462992 | None:intergenic |
| TAATCTATCTTCCGGAGCAT+AGG | 0.540322 | 3:-48463741 | None:intergenic |
| TCTATCTTCCGGAGCATAGG+AGG | 0.540370 | 3:-48463738 | None:intergenic |
| TCCTGCGTGTTCGGCTATAG+CGG | 0.549505 | 3:-48463222 | None:intergenic |
| AGAATTTCTAACTATTGCAT+GGG | 0.549733 | 3:+48462998 | MsG0380013936.01.T01:CDS |
| TAGTGATTCTTTCAGGACCA+TGG | 0.551937 | 3:-48463586 | None:intergenic |
| GAATACTATATGGTAGCGAC+GGG | 0.553560 | 3:+48462912 | MsG0380013936.01.T01:CDS |
| GATGGTGCTGCTACTGTTGG+CGG | 0.553778 | 3:+48463407 | MsG0380013936.01.T01:CDS |
| CATTGACCCAAATAGTTCAT+GGG | 0.556065 | 3:+48462637 | MsG0380013936.01.T01:CDS |
| GATTATTACGAGCTATACTT+GGG | 0.558504 | 3:+48463759 | MsG0380013936.01.T01:CDS |
| GCCGAGTTATTGATGTGAGA+TGG | 0.559021 | 3:+48463837 | MsG0380013936.01.T01:CDS |
| GTCACTAAATTCTGAGGAGT+AGG | 0.563396 | 3:-48462537 | None:intergenic |
| GAAAGAATCCTCCTATGCTC+CGG | 0.570879 | 3:+48463730 | MsG0380013936.01.T01:CDS |
| TGAATACTATATGGTAGCGA+CGG | 0.571395 | 3:+48462911 | MsG0380013936.01.T01:CDS |
| TCCTACATTGATTCCTTCCG+AGG | 0.572209 | 3:-48462766 | None:intergenic |
| CAAATGCGTCCATAGTGACT+AGG | 0.573493 | 3:-48462732 | None:intergenic |
| AATTAAAGTAGGTGATAAAG+TGG | 0.581077 | 3:+48463928 | MsG0380013936.01.T01:CDS |
| CAGACTCATGTGACAAGCCA+TGG | 0.581560 | 3:+48463569 | MsG0380013936.01.T01:CDS |
| AGTAAATGGGCTTCTAGATG+TGG | 0.584284 | 3:-48463617 | None:intergenic |
| TGTCCAATTGACACCTCGGA+AGG | 0.584582 | 3:+48462753 | MsG0380013936.01.T01:CDS |
| ATGCTCGATAAAAGGAATCA+GGG | 0.587469 | 3:-48463075 | None:intergenic |
| TGGGATCTTGGGTAGAAACA+GGG | 0.592045 | 3:+48463672 | MsG0380013936.01.T01:CDS |
| TCAGAATTGTAACCTTCCCA+TGG | 0.596416 | 3:-48463470 | None:intergenic |
| ATTAGTAGCTTATATGCCAT+GGG | 0.596673 | 3:+48463454 | MsG0380013936.01.T01:CDS |
| AAGTAGGTGATAAAGTGGCC+GGG | 0.597954 | 3:+48463933 | MsG0380013936.01.T01:CDS |
| TCCATCTCACATCAATAACT+CGG | 0.602104 | 3:-48463838 | None:intergenic |
| CACGCAAGGATTGGTCCTTG+GGG | 0.608804 | 3:+48462810 | MsG0380013936.01.T01:CDS |
| GTAGCTTATATGCCATGGGA+AGG | 0.611195 | 3:+48463458 | MsG0380013936.01.T01:CDS |
| GATCCTTGGCAATTCACGCA+AGG | 0.614349 | 3:+48462796 | MsG0380013936.01.T01:CDS |
| AACTGGATTGGAACGCCAAG+TGG | 0.615266 | 3:+48463181 | MsG0380013936.01.T01:CDS |
| GTTGAAGTCACTAAATTCTG+AGG | 0.617323 | 3:-48462543 | None:intergenic |
| AAACTACCTATAGGTGGTAG+GGG | 0.618823 | 3:+48463815 | MsG0380013936.01.T01:CDS |
| AATCCTTGCGTGAATTGCCA+AGG | 0.621341 | 3:-48462799 | None:intergenic |
| CATTTGTCCAATTGACACCT+CGG | 0.622149 | 3:+48462749 | MsG0380013936.01.T01:CDS |
| ATGGTTGAAGACCATATCAA+CGG | 0.624953 | 3:-48464029 | None:intergenic |
| TGCGTCCATAGTGACTAGGA+TGG | 0.626242 | 3:-48462728 | None:intergenic |
| ACGCAAGGATTGGTCCTTGG+GGG | 0.629421 | 3:+48462811 | MsG0380013936.01.T01:CDS |
| TTGAGTTATTTGGGTCCTGG+AGG | 0.630319 | 3:+48462666 | MsG0380013936.01.T01:CDS |
| TGGGTCCTGGAGGATTGACG+GGG | 0.631061 | 3:+48462676 | MsG0380013936.01.T01:CDS |
| GGGATCTTGGGTAGAAACAG+GGG | 0.635116 | 3:+48463673 | MsG0380013936.01.T01:CDS |
| ACCTCGGAAGGAATCAATGT+AGG | 0.642821 | 3:+48462765 | MsG0380013936.01.T01:CDS |
| GATTCAGGTATCGACCTCAA+AGG | 0.672007 | 3:+48463781 | MsG0380013936.01.T01:CDS |
| TGTCTAAAACTACCTATAGG+TGG | 0.673297 | 3:+48463809 | MsG0380013936.01.T01:CDS |
| CCCGCTATAGCCGAACACGC+AGG | 0.684746 | 3:+48463221 | MsG0380013936.01.T01:CDS |
| ATATGGTCTTCAACCATTAG+GGG | 0.710822 | 3:+48464035 | MsG0380013936.01.T01:CDS |
| ACTGAATCGAGGTATTCAGG+AGG | 0.734798 | 3:+48462947 | MsG0380013936.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATATGAATCGTTTC+TGG | - | Chr3:48463893-48463912 | None:intergenic | 20.0% |
| !!! | AAGATCATTTTATTTGGAAA+TGG | + | Chr3:48463269-48463288 | MsG0380013936.01.T01:CDS | 20.0% |
| !!! | AGATCATTTTATTTGGAAAT+GGG | + | Chr3:48463270-48463289 | MsG0380013936.01.T01:CDS | 20.0% |
| !!! | ATTTTATTAGTGATTCTTTC+AGG | - | Chr3:48463596-48463615 | None:intergenic | 20.0% |
| !!! | TAGTTAGGATAAGTTTTTTA+TGG | + | Chr3:48462424-48462443 | MsG0380013936.01.T01:CDS | 20.0% |
| !!! | TTCCATTTTTGTCTAAATTT+CGG | - | Chr3:48463643-48463662 | None:intergenic | 20.0% |
| ! | AAAAATGGAATTGTGATTCT+GGG | + | Chr3:48463653-48463672 | MsG0380013936.01.T01:CDS | 25.0% |
| ! | AAAGGTAAATGCGTAAAAAA+GGG | + | Chr3:48463371-48463390 | MsG0380013936.01.T01:CDS | 25.0% |
| ! | AAGAATTTCTAACTATTGCA+TGG | + | Chr3:48462997-48463016 | MsG0380013936.01.T01:CDS | 25.0% |
| ! | AAGCTCCAATAGAAAAATAT+TGG | - | Chr3:48463055-48463074 | None:intergenic | 25.0% |
| ! | AAGTAGAGATGAATACTATA+TGG | + | Chr3:48462902-48462921 | MsG0380013936.01.T01:CDS | 25.0% |
| ! | AATTAAAGTAGGTGATAAAG+TGG | + | Chr3:48463928-48463947 | MsG0380013936.01.T01:CDS | 25.0% |
| ! | AGAATTTCTAACTATTGCAT+GGG | + | Chr3:48462998-48463017 | MsG0380013936.01.T01:CDS | 25.0% |
| ! | ATATAGTATTCATCTCTACT+TGG | - | Chr3:48462903-48462922 | None:intergenic | 25.0% |
| ! | CAATAGTTAGAAATTCTTGA+CGG | - | Chr3:48462995-48463014 | None:intergenic | 25.0% |
| ! | CCAATAGAAAAATATTGGAA+GGG | - | Chr3:48463050-48463069 | None:intergenic | 25.0% |
| ! | CGTTTAGAAAATATAATTCG+AGG | + | Chr3:48462480-48462499 | MsG0380013936.01.T01:CDS | 25.0% |
| ! | CTCTCAGAAATTTCAAAAAA+CGG | - | Chr3:48462849-48462868 | None:intergenic | 25.0% |
| ! | GAACGTTGATATCTAATTAA+TGG | - | Chr3:48463311-48463330 | None:intergenic | 25.0% |
| ! | TAAAGGTAAATGCGTAAAAA+AGG | + | Chr3:48463370-48463389 | MsG0380013936.01.T01:CDS | 25.0% |
| ! | TCCAATAGAAAAATATTGGA+AGG | - | Chr3:48463051-48463070 | None:intergenic | 25.0% |
| !! | ACTGACAAGATCATTTTATT+TGG | + | Chr3:48463263-48463282 | MsG0380013936.01.T01:CDS | 25.0% |
| !! | GATCTAAAACTTGAGATAAT+GGG | - | Chr3:48462608-48462627 | None:intergenic | 25.0% |
| AGATTATTACGAGCTATACT+TGG | + | Chr3:48463758-48463777 | MsG0380013936.01.T01:CDS | 30.0% | |
| ATAATTCGAGGAACTATATC+TGG | + | Chr3:48462492-48462511 | MsG0380013936.01.T01:CDS | 30.0% | |
| ATTAGTAGCTTATATGCCAT+GGG | + | Chr3:48463454-48463473 | MsG0380013936.01.T01:CDS | 30.0% | |
| CAAAAATGGAATTGTGATTC+TGG | + | Chr3:48463652-48463671 | MsG0380013936.01.T01:CDS | 30.0% | |
| CAGAAACGTGAAATTAAAGT+AGG | + | Chr3:48463917-48463936 | MsG0380013936.01.T01:CDS | 30.0% | |
| CTCCGAAATTTAGACAAAAA+TGG | + | Chr3:48463638-48463657 | MsG0380013936.01.T01:CDS | 30.0% | |
| GAGTCAACAATCGATTATAA+TGG | - | Chr3:48462455-48462474 | None:intergenic | 30.0% | |
| GATTATTACGAGCTATACTT+GGG | + | Chr3:48463759-48463778 | MsG0380013936.01.T01:CDS | 30.0% | |
| GATTCATAAGTGGTTGTTAA+TGG | - | Chr3:48462570-48462589 | None:intergenic | 30.0% | |
| GGGAGAAAATTGAGTTATTT+GGG | + | Chr3:48462657-48462676 | MsG0380013936.01.T01:CDS | 30.0% | |
| GTCTAAATTTCGGAGTAAAT+GGG | - | Chr3:48463633-48463652 | None:intergenic | 30.0% | |
| TATTAGTAGCTTATATGCCA+TGG | + | Chr3:48463453-48463472 | MsG0380013936.01.T01:CDS | 30.0% | |
| TCCAAAAAACGATTCATAAG+TGG | - | Chr3:48462580-48462599 | None:intergenic | 30.0% | |
| TGGGAGAAAATTGAGTTATT+TGG | + | Chr3:48462656-48462675 | MsG0380013936.01.T01:CDS | 30.0% | |
| TGTCTAAATTTCGGAGTAAA+TGG | - | Chr3:48463634-48463653 | None:intergenic | 30.0% | |
| ! | ACTTGTCTAAAACTACCTAT+AGG | + | Chr3:48463806-48463825 | MsG0380013936.01.T01:CDS | 30.0% |
| ! | ATTTTCTCCCATGAACTATT+TGG | - | Chr3:48462647-48462666 | None:intergenic | 30.0% |
| ! | CCCTTCCAATATTTTTCTAT+TGG | + | Chr3:48463047-48463066 | MsG0380013936.01.T01:CDS | 30.0% |
| ! | CGATCTAAAACTTGAGATAA+TGG | - | Chr3:48462609-48462628 | None:intergenic | 30.0% |
| ! | TTCAAAGATTTTGTCTAGAC+AGG | + | Chr3:48463979-48463998 | MsG0380013936.01.T01:CDS | 30.0% |
| ! | TTTTAGACAAGTTTCCTTTG+AGG | - | Chr3:48463798-48463817 | None:intergenic | 30.0% |
| ! | TTTTCTCCCATGAACTATTT+GGG | - | Chr3:48462646-48462665 | None:intergenic | 30.0% |
| !! | ATGCATGCAAGTATTTTTGT+TGG | - | Chr3:48463333-48463352 | None:intergenic | 30.0% |
| !!! | AATTTTTTAGCACTGAATCG+AGG | + | Chr3:48462936-48462955 | MsG0380013936.01.T01:CDS | 30.0% |
| !!! | ACCACTTATGAATCGTTTTT+TGG | + | Chr3:48462576-48462595 | MsG0380013936.01.T01:CDS | 30.0% |
| AAAACTACCTATAGGTGGTA+GGG | + | Chr3:48463814-48463833 | MsG0380013936.01.T01:CDS | 35.0% | |
| AAATTGAGTTATTTGGGTCC+TGG | + | Chr3:48462663-48462682 | MsG0380013936.01.T01:CDS | 35.0% | |
| AACTATTTGGGTCAATGGAT+TGG | - | Chr3:48462634-48462653 | None:intergenic | 35.0% | |
| AGATGGATCCAAAAAAAAGC+AGG | + | Chr3:48463854-48463873 | MsG0380013936.01.T01:CDS | 35.0% | |
| ATGCTCGATAAAAGGAATCA+GGG | - | Chr3:48463078-48463097 | None:intergenic | 35.0% | |
| ATGGTTGAAGACCATATCAA+CGG | - | Chr3:48464032-48464051 | None:intergenic | 35.0% | |
| CAAAAATCCCAGGTTCATAA+AGG | + | Chr3:48463353-48463372 | MsG0380013936.01.T01:CDS | 35.0% | |
| CATTGACCCAAATAGTTCAT+GGG | + | Chr3:48462637-48462656 | MsG0380013936.01.T01:CDS | 35.0% | |
| GCATCATTATGCTCGATAAA+AGG | - | Chr3:48463086-48463105 | None:intergenic | 35.0% | |
| GCATTTACCTTTATGAACCT+GGG | - | Chr3:48463363-48463382 | None:intergenic | 35.0% | |
| GCTCGTAATAATCTATCTTC+CGG | - | Chr3:48463752-48463771 | None:intergenic | 35.0% | |
| GGAATCAATGTAGGACTTAT+TGG | + | Chr3:48462774-48462793 | MsG0380013936.01.T01:CDS | 35.0% | |
| GTTGAAGTCACTAAATTCTG+AGG | - | Chr3:48462546-48462565 | None:intergenic | 35.0% | |
| TAAAACTACCTATAGGTGGT+AGG | + | Chr3:48463813-48463832 | MsG0380013936.01.T01:CDS | 35.0% | |
| TATGCTCGATAAAAGGAATC+AGG | - | Chr3:48463079-48463098 | None:intergenic | 35.0% | |
| TCCATCTCACATCAATAACT+CGG | - | Chr3:48463841-48463860 | None:intergenic | 35.0% | |
| ! | AGTTCCAACAATGCACTTTT+CGG | - | Chr3:48463165-48463184 | None:intergenic | 35.0% |
| ! | TGAATACTATATGGTAGCGA+CGG | + | Chr3:48462911-48462930 | MsG0380013936.01.T01:CDS | 35.0% |
| ! | TGTCTAAAACTACCTATAGG+TGG | + | Chr3:48463809-48463828 | MsG0380013936.01.T01:CDS | 35.0% |
| !! | AAGGGACAAATTTTAGCAGA+TGG | + | Chr3:48463389-48463408 | MsG0380013936.01.T01:CDS | 35.0% |
| !! | AATTGTGATTCTGGGATCTT+GGG | + | Chr3:48463661-48463680 | MsG0380013936.01.T01:CDS | 35.0% |
| !! | AGAAACAGGGGATATTTTAG+TGG | + | Chr3:48463685-48463704 | MsG0380013936.01.T01:CDS | 35.0% |
| !! | GATATGCCTTATTTGCAAGA+TGG | + | Chr3:48464001-48464020 | MsG0380013936.01.T01:CDS | 35.0% |
| !!! | AGCTAGAACCTGCTTTTTTT+TGG | - | Chr3:48463865-48463884 | None:intergenic | 35.0% |
| !!! | GAAACAGGGGATATTTTAGT+GGG | + | Chr3:48463686-48463705 | MsG0380013936.01.T01:CDS | 35.0% |
| AAACTACCTATAGGTGGTAG+GGG | + | Chr3:48463815-48463834 | MsG0380013936.01.T01:CDS | 40.0% | |
| AAAGTAGGTGATAAAGTGGC+CGG | + | Chr3:48463932-48463951 | MsG0380013936.01.T01:CDS | 40.0% | |
| CATTTGTCCAATTGACACCT+CGG | + | Chr3:48462749-48462768 | MsG0380013936.01.T01:CDS | 40.0% | |
| CCATGAACTATTTGGGTCAA+TGG | - | Chr3:48462639-48462658 | None:intergenic | 40.0% | |
| CCATTGACCCAAATAGTTCA+TGG | + | Chr3:48462636-48462655 | MsG0380013936.01.T01:CDS | 40.0% | |
| CGCATTTACCTTTATGAACC+TGG | - | Chr3:48463364-48463383 | None:intergenic | 40.0% | |
| GATATCCATCCTAGTCACTA+TGG | + | Chr3:48462723-48462742 | MsG0380013936.01.T01:CDS | 40.0% | |
| GGGTAAATTAACGCCTCAAA+TGG | + | Chr3:48463706-48463725 | MsG0380013936.01.T01:CDS | 40.0% | |
| GGTCTTCCATCTTGCAAATA+AGG | - | Chr3:48464010-48464029 | None:intergenic | 40.0% | |
| TAATCTATCTTCCGGAGCAT+AGG | - | Chr3:48463744-48463763 | None:intergenic | 40.0% | |
| TAGTGATTCTTTCAGGACCA+TGG | - | Chr3:48463589-48463608 | None:intergenic | 40.0% | |
| TCAGAATTGTAACCTTCCCA+TGG | - | Chr3:48463473-48463492 | None:intergenic | 40.0% | |
| TCTAACTATTGCATGGGAAC+AGG | + | Chr3:48463004-48463023 | MsG0380013936.01.T01:CDS | 40.0% | |
| TGGTTGAAGACCATATCAAC+GGG | - | Chr3:48464031-48464050 | None:intergenic | 40.0% | |
| TGTACTCATTAGTGAACGTC+TGG | + | Chr3:48463499-48463518 | MsG0380013936.01.T01:CDS | 40.0% | |
| TGTAGGACTTATTGGATCCT+TGG | + | Chr3:48462782-48462801 | MsG0380013936.01.T01:CDS | 40.0% | |
| TTGCATGCATCAAAAATCCC+AGG | + | Chr3:48463343-48463362 | MsG0380013936.01.T01:CDS | 40.0% | |
| ! | ACCTTTATTTCCATGTCTCC+CGG | - | Chr3:48463954-48463973 | None:intergenic | 40.0% |
| ! | AGTAAATGGGCTTCTAGATG+TGG | - | Chr3:48463620-48463639 | None:intergenic | 40.0% |
| ! | GAAAAGTGCATTGTTGGAAC+TGG | + | Chr3:48463164-48463183 | MsG0380013936.01.T01:CDS | 40.0% |
| ! | GAATACTATATGGTAGCGAC+GGG | + | Chr3:48462912-48462931 | MsG0380013936.01.T01:CDS | 40.0% |
| ! | GTCACTAAATTCTGAGGAGT+AGG | - | Chr3:48462540-48462559 | None:intergenic | 40.0% |
| !! | GAATTGTGATTCTGGGATCT+TGG | + | Chr3:48463660-48463679 | MsG0380013936.01.T01:CDS | 40.0% |
| !!! | AACTGCTAGTTTTCGGATAC+GGG | + | Chr3:48462701-48462720 | MsG0380013936.01.T01:CDS | 40.0% |
| !!! | GAACTGCTAGTTTTCGGATA+CGG | + | Chr3:48462700-48462719 | MsG0380013936.01.T01:CDS | 40.0% |
| AACGATCTTTCCTGCGTGTT+CGG | - | Chr3:48463234-48463253 | None:intergenic | 45.0% | |
| AAGTAGGTGATAAAGTGGCC+GGG | + | Chr3:48463933-48463952 | MsG0380013936.01.T01:CDS | 45.0% | |
| AATCCTTGCGTGAATTGCCA+AGG | - | Chr3:48462802-48462821 | None:intergenic | 45.0% | |
| ACCTCGGAAGGAATCAATGT+AGG | + | Chr3:48462765-48462784 | MsG0380013936.01.T01:CDS | 45.0% | |
| ACGAGCTATACTTGGGATTC+AGG | + | Chr3:48463766-48463785 | MsG0380013936.01.T01:CDS | 45.0% | |
| AGATGGAAGACCCGTTGATA+TGG | + | Chr3:48464018-48464037 | MsG0380013936.01.T01:CDS | 45.0% | |
| CAAATGCGTCCATAGTGACT+AGG | - | Chr3:48462735-48462754 | None:intergenic | 45.0% | |
| GAAAGAATCCTCCTATGCTC+CGG | + | Chr3:48463730-48463749 | MsG0380013936.01.T01:CDS | 45.0% | |
| GAGGATTCTTTCGCCATTTG+AGG | - | Chr3:48463722-48463741 | None:intergenic | 45.0% | |
| GCCGAGTTATTGATGTGAGA+TGG | + | Chr3:48463837-48463856 | MsG0380013936.01.T01:CDS | 45.0% | |
| GTAGCTTATATGCCATGGGA+AGG | + | Chr3:48463458-48463477 | MsG0380013936.01.T01:CDS | 45.0% | |
| GTCAAGCAGTTCCTCTTTCT+CGG | + | Chr3:48463138-48463157 | MsG0380013936.01.T01:CDS | 45.0% | |
| GTGCATTGTTGGAACTGGAT+TGG | + | Chr3:48463169-48463188 | MsG0380013936.01.T01:CDS | 45.0% | |
| TGGGATCTTGGGTAGAAACA+GGG | + | Chr3:48463672-48463691 | MsG0380013936.01.T01:CDS | 45.0% | |
| TTGAGTTATTTGGGTCCTGG+AGG | + | Chr3:48462666-48462685 | MsG0380013936.01.T01:CDS | 45.0% | |
| TTGGCAATTCACGCAAGGAT+TGG | + | Chr3:48462801-48462820 | MsG0380013936.01.T01:CDS | 45.0% | |
| ! | AATTCTTGACGGTATCGAGC+TGG | - | Chr3:48462984-48463003 | None:intergenic | 45.0% |
| ! | ACTGAATCGAGGTATTCAGG+AGG | + | Chr3:48462947-48462966 | MsG0380013936.01.T01:CDS | 45.0% |
| ! | AGCACTGAATCGAGGTATTC+AGG | + | Chr3:48462944-48462963 | MsG0380013936.01.T01:CDS | 45.0% |
| ! | ATTCCTTCCGAGGTGTCAAT+TGG | - | Chr3:48462759-48462778 | None:intergenic | 45.0% |
| !! | GATTCAGGTATCGACCTCAA+AGG | + | Chr3:48463781-48463800 | MsG0380013936.01.T01:CDS | 45.0% |
| !! | TCCTACATTGATTCCTTCCG+AGG | - | Chr3:48462769-48462788 | None:intergenic | 45.0% |
| AGCGGGAACTCCTGAATCTA+AGG | - | Chr3:48463207-48463226 | None:intergenic | 50.0% | |
| CAGACTCATGTGACAAGCCA+TGG | + | Chr3:48463569-48463588 | MsG0380013936.01.T01:CDS | 50.0% | |
| CTGGGATCTTGGGTAGAAAC+AGG | + | Chr3:48463671-48463690 | MsG0380013936.01.T01:CDS | 50.0% | |
| GATCCTTGGCAATTCACGCA+AGG | + | Chr3:48462796-48462815 | MsG0380013936.01.T01:CDS | 50.0% | |
| GCCGGGAGACATGGAAATAA+AGG | + | Chr3:48463950-48463969 | MsG0380013936.01.T01:CDS | 50.0% | |
| GGACTTTCTATAGACCCCCA+AGG | - | Chr3:48462828-48462847 | None:intergenic | 50.0% | |
| GGGATCTTGGGTAGAAACAG+GGG | + | Chr3:48463673-48463692 | MsG0380013936.01.T01:CDS | 50.0% | |
| TCTATCTTCCGGAGCATAGG+AGG | - | Chr3:48463741-48463760 | None:intergenic | 50.0% | |
| TGCGTCCATAGTGACTAGGA+TGG | - | Chr3:48462731-48462750 | None:intergenic | 50.0% | |
| TGTCCAATTGACACCTCGGA+AGG | + | Chr3:48462753-48462772 | MsG0380013936.01.T01:CDS | 50.0% | |
| TTTGGGTCCTGGAGGATTGA+CGG | + | Chr3:48462674-48462693 | MsG0380013936.01.T01:CDS | 50.0% | |
| ! | AACTGGATTGGAACGCCAAG+TGG | + | Chr3:48463181-48463200 | MsG0380013936.01.T01:CDS | 50.0% |
| ! | CACTTTTCGGACCGAGAAAG+AGG | - | Chr3:48463152-48463171 | None:intergenic | 50.0% |
| ! | CGGTCCGAAAAGTGCATTGT+TGG | + | Chr3:48463158-48463177 | MsG0380013936.01.T01:CDS | 50.0% |
| ! | CTCCTGAATCTAAGGCCACT+TGG | - | Chr3:48463199-48463218 | None:intergenic | 50.0% |
| !! | TCACGCAAGGATTGGTCCTT+GGG | + | Chr3:48462809-48462828 | MsG0380013936.01.T01:CDS | 50.0% |
| !! | TTCACGCAAGGATTGGTCCT+TGG | + | Chr3:48462808-48462827 | MsG0380013936.01.T01:CDS | 50.0% |
| GATAAAGTGGCCGGGAGACA+TGG | + | Chr3:48463941-48463960 | MsG0380013936.01.T01:CDS | 55.0% | |
| GTTGGCGGTGAACTCGCTTT+GGG | + | Chr3:48463422-48463441 | MsG0380013936.01.T01:CDS | 55.0% | |
| TCCTGCGTGTTCGGCTATAG+CGG | - | Chr3:48463225-48463244 | None:intergenic | 55.0% | |
| TGTTGGCGGTGAACTCGCTT+TGG | + | Chr3:48463421-48463440 | MsG0380013936.01.T01:CDS | 55.0% | |
| TTGGGTCCTGGAGGATTGAC+GGG | + | Chr3:48462675-48462694 | MsG0380013936.01.T01:CDS | 55.0% | |
| ! | CGCCAAGTGGCCTTAGATTC+AGG | + | Chr3:48463194-48463213 | MsG0380013936.01.T01:CDS | 55.0% |
| !! | ACGCAAGGATTGGTCCTTGG+GGG | + | Chr3:48462811-48462830 | MsG0380013936.01.T01:CDS | 55.0% |
| !! | CACGCAAGGATTGGTCCTTG+GGG | + | Chr3:48462810-48462829 | MsG0380013936.01.T01:CDS | 55.0% |
| !! | GATGGTGCTGCTACTGTTGG+CGG | + | Chr3:48463407-48463426 | MsG0380013936.01.T01:CDS | 55.0% |
| !! | GCAGATGGTGCTGCTACTGT+TGG | + | Chr3:48463404-48463423 | MsG0380013936.01.T01:CDS | 55.0% |
| !!! | CGGGGCGAACTGCTAGTTTT+CGG | + | Chr3:48462694-48462713 | MsG0380013936.01.T01:CDS | 55.0% |
| ACTCGGCCCCTACCACCTAT+AGG | - | Chr3:48463824-48463843 | None:intergenic | 60.0% | |
| CCTGCGTGTTCGGCTATAGC+GGG | - | Chr3:48463224-48463243 | None:intergenic | 60.0% | |
| TGGGTCCTGGAGGATTGACG+GGG | + | Chr3:48462676-48462695 | MsG0380013936.01.T01:CDS | 60.0% | |
| CCCGCTATAGCCGAACACGC+AGG | + | Chr3:48463221-48463240 | MsG0380013936.01.T01:CDS | 65.0% | |
| GTTCGCCCCGTCAATCCTCC+AGG | - | Chr3:48462684-48462703 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 48462414 | 48464054 | 48462414 | ID=MsG0380013936.01;Name=MsG0380013936.01 |
| Chr3 | mRNA | 48462414 | 48464054 | 48462414 | ID=MsG0380013936.01.T01;Parent=MsG0380013936.01;Name=MsG0380013936.01.T01;_AED=0.50;_eAED=0.50;_QI=0|-1|0|1|-1|1|1|0|546 |
| Chr3 | exon | 48462414 | 48464054 | 48462414 | ID=MsG0380013936.01.T01:exon:8503;Parent=MsG0380013936.01.T01 |
| Chr3 | CDS | 48462414 | 48464054 | 48462414 | ID=MsG0380013936.01.T01:cds;Parent=MsG0380013936.01.T01 |
| Gene Sequence |
| Protein sequence |
