Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380013961.01.T01 | AWW91873.1 | 99.613 | 775 | 3 | 0 | 1 | 775 | 1 | 775 | 0 | 1586 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380013961.01.T01 | Q9BBS9 | 92.857 | 770 | 55 | 0 | 6 | 775 | 1 | 770 | 0 | 1484 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380013961.01.T01 | A0A2Z4KH34 | 99.613 | 775 | 3 | 0 | 1 | 775 | 1 | 775 | 0.0 | 1586 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048560.01 | MsG0380013961.01 | 0.803344 | 3.646226e-49 | 1.827819e-46 |
| MsG0080048690.01 | MsG0380013961.01 | 0.830991 | 2.150272e-55 | 2.302697e-52 |
| MsG0080048691.01 | MsG0380013961.01 | 0.851805 | 6.986802e-61 | 1.430811e-57 |
| MsG0080048692.01 | MsG0380013961.01 | 0.858170 | 9.899084e-63 | 2.503886e-59 |
| MsG0080048693.01 | MsG0380013961.01 | 0.881904 | 1.628148e-70 | 9.713640e-67 |
| MsG0080048694.01 | MsG0380013961.01 | 0.810342 | 1.208956e-50 | 7.268801e-48 |
| MsG0080048695.01 | MsG0380013961.01 | 0.809889 | 1.513484e-50 | 8.992704e-48 |
| MsG0080048697.01 | MsG0380013961.01 | 0.846970 | 1.554458e-59 | 2.721779e-56 |
| MsG0080048698.01 | MsG0380013961.01 | 0.837002 | 6.721186e-57 | 8.615353e-54 |
| MsG0080048699.01 | MsG0380013961.01 | 0.840771 | 7.115652e-58 | 1.024099e-54 |
| MsG0080049076.01 | MsG0380013961.01 | 0.837909 | 3.934996e-57 | 5.185986e-54 |
| MsG0180001507.01 | MsG0380013961.01 | 0.829659 | 4.548455e-55 | 4.685560e-52 |
| MsG0180002439.01 | MsG0380013961.01 | 0.818575 | 1.824394e-52 | 1.370805e-49 |
| MsG0380013448.01 | MsG0380013961.01 | 0.847367 | 1.209532e-59 | 2.144956e-56 |
| MsG0380013888.01 | MsG0380013961.01 | 0.871656 | 5.789318e-67 | 2.353868e-63 |
| MsG0380013890.01 | MsG0380013961.01 | 0.860475 | 2.012495e-63 | 5.508469e-60 |
| MsG0380013892.01 | MsG0380013961.01 | 0.829137 | 6.091716e-55 | 6.179695e-52 |
| MsG0380013917.01 | MsG0380013961.01 | 0.818929 | 1.516566e-52 | 1.150867e-49 |
| MsG0380013918.01 | MsG0380013961.01 | 0.833464 | 5.253456e-56 | 6.054475e-53 |
| MsG0380013921.01 | MsG0380013961.01 | 0.812636 | 3.837552e-51 | 2.452781e-48 |
| MsG0380013923.01 | MsG0380013961.01 | 0.811878 | 5.616012e-51 | 3.516988e-48 |
| MsG0380013926.01 | MsG0380013961.01 | 0.882744 | 8.053594e-71 | 4.965405e-67 |
| MsG0380013928.01 | MsG0380013961.01 | 0.810620 | 1.052826e-50 | 6.377278e-48 |
| MsG0380013929.01 | MsG0380013961.01 | 0.825675 | 4.117853e-54 | 3.778826e-51 |
| MsG0380013931.01 | MsG0380013961.01 | 0.845563 | 3.756945e-59 | 6.285931e-56 |
| MsG0380013932.01 | MsG0380013961.01 | 0.803171 | 3.959764e-49 | 1.976276e-46 |
| MsG0380013935.01 | MsG0380013961.01 | 0.831572 | 1.546870e-55 | 1.685469e-52 |
| MsG0380013936.01 | MsG0380013961.01 | 0.808673 | 2.758907e-50 | 1.587138e-47 |
| MsG0380013937.01 | MsG0380013961.01 | 0.807787 | 4.260681e-50 | 2.394802e-47 |
| MsG0380013940.01 | MsG0380013961.01 | 0.876517 | 1.311204e-68 | 6.375833e-65 |
| MsG0380013941.01 | MsG0380013961.01 | 0.861975 | 7.028724e-64 | 2.025167e-60 |
| MsG0380013942.01 | MsG0380013961.01 | 0.858215 | 9.599291e-63 | 2.431485e-59 |
| MsG0380013943.01 | MsG0380013961.01 | 0.869838 | 2.293066e-66 | 8.729557e-63 |
| MsG0380013944.01 | MsG0380013961.01 | 0.845774 | 3.293160e-59 | 5.548293e-56 |
| MsG0380013945.01 | MsG0380013961.01 | 0.860149 | 2.526076e-63 | 6.837539e-60 |
| MsG0380013951.01 | MsG0380013961.01 | 0.860758 | 1.651528e-63 | 4.564782e-60 |
| MsG0380013952.01 | MsG0380013961.01 | 0.842650 | 2.271266e-58 | 3.466274e-55 |
| MsG0380013953.01 | MsG0380013961.01 | 0.855346 | 6.710338e-62 | 1.544758e-58 |
| MsG0380013954.01 | MsG0380013961.01 | 0.834319 | 3.211180e-56 | 3.797557e-53 |
| MsG0380013956.01 | MsG0380013961.01 | 0.830720 | 2.504571e-55 | 2.660872e-52 |
| MsG0380013957.01 | MsG0380013961.01 | 0.873328 | 1.600674e-67 | 6.918977e-64 |
| MsG0380013959.01 | MsG0380013961.01 | 0.828739 | 7.605296e-55 | 7.625098e-52 |
| MsG0380013961.01 | MsG0380013962.01 | 0.892265 | 1.861414e-74 | 1.688605e-70 |
| MsG0380013961.01 | MsG0380013966.01 | 0.878966 | 1.829527e-69 | 9.743693e-66 |
| MsG0380013961.01 | MsG0380013967.01 | 0.873614 | 1.282420e-67 | 5.600142e-64 |
| MsG0380013961.01 | MsG0380013968.01 | 0.853121 | 2.946769e-61 | 6.299055e-58 |
| MsG0380013961.01 | MsG0380013969.01 | 0.846135 | 2.626100e-59 | 4.475523e-56 |
| MsG0380013961.01 | MsG0380013971.01 | 0.860080 | 2.650721e-63 | 7.157996e-60 |
| MsG0380013961.01 | MsG0380013972.01 | 0.833211 | 6.076246e-56 | 6.950440e-53 |
| MsG0380013961.01 | MsG0380013975.01 | 0.856236 | 3.688018e-62 | 8.742677e-59 |
| MsG0380013961.01 | MsG0380013977.01 | 0.874136 | 8.545353e-68 | 3.803210e-64 |
| MsG0380013961.01 | MsG0380013981.01 | 0.863828 | 1.884046e-64 | 5.789986e-61 |
| MsG0380013961.01 | MsG0380013983.01 | 0.824056 | 9.924685e-54 | 8.695310e-51 |
| MsG0380013961.01 | MsG0380013984.01 | 0.820111 | 8.151452e-53 | 6.392728e-50 |
| MsG0380013961.01 | MsG0380013986.01 | 0.813264 | 2.795469e-51 | 1.816824e-48 |
| MsG0380013961.01 | MsG0380013997.01 | 0.810235 | 1.275141e-50 | 7.645175e-48 |
| MsG0380013961.01 | MsG0380013999.01 | 0.839610 | 1.429620e-57 | 1.984674e-54 |
| MsG0380013961.01 | MsG0380014005.01 | 0.858198 | 9.714164e-63 | 2.459363e-59 |
| MsG0380013961.01 | MsG0380014006.01 | 0.861723 | 8.398193e-64 | 2.398492e-60 |
| MsG0380013961.01 | MsG0380014008.01 | 0.820017 | 8.566296e-53 | 6.699811e-50 |
| MsG0380013961.01 | MsG0380014017.01 | 0.866014 | 3.886431e-65 | 1.290430e-61 |
| MsG0380013961.01 | MsG0380014018.01 | 0.839981 | 1.144276e-57 | 1.607193e-54 |
| MsG0380013961.01 | MsG0380014020.01 | 0.828229 | 1.009891e-54 | 9.976860e-52 |
| MsG0380013961.01 | MsG0380014021.01 | 0.827922 | 1.197253e-54 | 1.172213e-51 |
| MsG0380013961.01 | MsG0380014023.01 | 0.839704 | 1.350983e-57 | 1.880902e-54 |
| MsG0380013961.01 | MsG0380014024.01 | 0.814682 | 1.360529e-51 | 9.189297e-49 |
| MsG0380013961.01 | MsG0380014026.01 | 0.878778 | 2.132409e-69 | 1.127551e-65 |
| MsG0380013961.01 | MsG0380014027.01 | 0.849073 | 4.085720e-60 | 7.655122e-57 |
| MsG0380013961.01 | MsG0380014029.01 | 0.804451 | 2.146417e-49 | 1.107053e-46 |
| MsG0380013961.01 | MsG0380014032.01 | 0.855867 | 4.729467e-62 | 1.107563e-58 |
| MsG0380013961.01 | MsG0380014033.01 | 0.857789 | 1.284986e-62 | 3.208630e-59 |
| MsG0380013961.01 | MsG0380014034.01 | 0.801749 | 7.773442e-49 | 3.741511e-46 |
| MsG0380013961.01 | MsG0380014035.01 | 0.804550 | 2.047529e-49 | 1.058719e-46 |
| MsG0380013961.01 | MsG0380014036.01 | 0.806223 | 9.131518e-50 | 4.929413e-47 |
| MsG0380013961.01 | MsG0380014039.01 | 0.845196 | 4.722055e-59 | 7.808099e-56 |
| MsG0380013961.01 | MsG0380014040.01 | 0.834502 | 2.887966e-56 | 3.433966e-53 |
| MsG0380013961.01 | MsG0380014044.01 | 0.811667 | 6.243716e-51 | 3.888007e-48 |
| MsG0380013961.01 | MsG0380014046.01 | 0.810867 | 9.311521e-51 | 5.677681e-48 |
| MsG0380013961.01 | MsG0380014051.01 | 0.820121 | 8.108807e-53 | 6.360796e-50 |
| MsG0380013961.01 | MsG0380014054.01 | 0.843271 | 1.552352e-58 | 2.416185e-55 |
| MsG0380013961.01 | MsG0380014057.01 | 0.855384 | 6.539705e-62 | 1.507300e-58 |
| MsG0380013961.01 | MsG0380016424.01 | 0.808774 | 2.624870e-50 | 1.514015e-47 |
| MsG0380013961.01 | MsG0380017007.01 | 0.848544 | 5.727692e-60 | 1.054742e-56 |
| MsG0380013961.01 | MsG0480018296.01 | 0.855602 | 5.649317e-62 | 1.311385e-58 |
| MsG0380013961.01 | MsG0480020052.01 | 0.828150 | 1.054977e-54 | 1.039894e-51 |
| MsG0380013961.01 | MsG0580027677.01 | 0.880535 | 5.067039e-70 | 2.867463e-66 |
| MsG0380013961.01 | MsG0780038197.01 | 0.824367 | 8.386399e-54 | 7.413043e-51 |
| MsG0380013961.01 | MsG0780040316.01 | 0.844034 | 9.708176e-59 | 1.547702e-55 |
| MsG0380013961.01 | MsG0880044440.01 | 0.811571 | 6.549364e-51 | 4.068330e-48 |
| MsG0280009733.01 | MsG0380013961.01 | 0.845826 | 3.187503e-59 | 5.379549e-56 |
| MsG0280010137.01 | MsG0380013961.01 | 0.802987 | 4.321067e-49 | 2.146412e-46 |
| MsG0280010140.01 | MsG0380013961.01 | 0.802671 | 5.023025e-49 | 2.475139e-46 |
| MsG0280010143.01 | MsG0380013961.01 | 0.837521 | 4.949776e-57 | 6.446596e-54 |
| MsG0280010144.01 | MsG0380013961.01 | 0.836658 | 8.225456e-57 | 1.043328e-53 |
| MsG0280010145.01 | MsG0380013961.01 | 0.848785 | 4.912688e-60 | 9.118133e-57 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380013961.01.T01 | MTR_4g051130 | 96.516 | 775 | 9 | 1 | 1 | 775 | 1 | 757 | 0.0 | 1516 |
| MsG0380013961.01.T01 | MTR_0002s0510 | 78.544 | 783 | 156 | 5 | 3 | 775 | 52 | 832 | 0.0 | 1246 |
| MsG0380013961.01.T01 | MTR_5g005060 | 85.909 | 220 | 7 | 1 | 1 | 220 | 1 | 196 | 6.08e-126 | 375 |
| MsG0380013961.01.T01 | MTR_7g077330 | 96.154 | 78 | 3 | 0 | 625 | 702 | 1 | 78 | 1.01e-47 | 164 |
| MsG0380013961.01.T01 | MTR_1g058960 | 92.647 | 68 | 5 | 0 | 708 | 775 | 58 | 125 | 5.58e-34 | 129 |
| MsG0380013961.01.T01 | MTR_4g055180 | 90.323 | 62 | 6 | 0 | 376 | 437 | 20 | 81 | 6.55e-34 | 126 |
| MsG0380013961.01.T01 | MTR_2g040120 | 66.667 | 72 | 24 | 0 | 389 | 460 | 9 | 80 | 4.50e-24 | 97.1 |
| MsG0380013961.01.T01 | MTR_4g039510 | 80.357 | 56 | 11 | 0 | 600 | 655 | 39 | 94 | 3.07e-23 | 95.1 |
| MsG0380013961.01.T01 | MTR_0552s0020 | 100.000 | 42 | 0 | 0 | 553 | 594 | 1 | 42 | 2.35e-21 | 89.4 |
| MsG0380013961.01.T01 | MTR_4g021033 | 100.000 | 42 | 0 | 0 | 553 | 594 | 1 | 42 | 2.35e-21 | 89.4 |
| MsG0380013961.01.T01 | MTR_6g042920 | 85.714 | 42 | 6 | 0 | 691 | 732 | 73 | 114 | 4.43e-17 | 79.3 |
| MsG0380013961.01.T01 | MTR_5g085695 | 72.727 | 44 | 12 | 0 | 640 | 683 | 2 | 45 | 5.56e-15 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380013961.01.T01 | ATCG00190 | 87.824 | 772 | 92 | 1 | 6 | 775 | 1 | 772 | 0.0 | 1404 |
Find 162 sgRNAs with CRISPR-Local
Find 234 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGGAGAAAATTGAGTTATT+TGG | 0.135693 | 3:-48519001 | MsG0380013961.01.T01:CDS |
| TGTCTAAATTTCGGAGTAAA+TGG | 0.137285 | 3:+48518026 | None:intergenic |
| CATTTGATTGGAATGAAATT+TGG | 0.153768 | 3:-48519294 | MsG0380013961.01.T01:CDS |
| ATATATCCGCGGGATTAATT+TGG | 0.209384 | 3:-48519926 | MsG0380013961.01.T01:CDS |
| TTTCAACAAAGATGTGAATT+AGG | 0.219138 | 3:-48519414 | MsG0380013961.01.T01:CDS |
| CTGGGAACTTCTATAGTAAA+TGG | 0.231551 | 3:-48519840 | MsG0380013961.01.T01:CDS |
| ACATAAAGATTCAGGAAATA+TGG | 0.234879 | 3:+48519458 | None:intergenic |
| GTCAAAAGAAAATGCCATTT+TGG | 0.238441 | 3:-48519517 | MsG0380013961.01.T01:CDS |
| GAACGTTGATATCTAATTAA+TGG | 0.244746 | 3:+48518349 | None:intergenic |
| TTGATAGAAAAGCAAGGATA+TGG | 0.252693 | 3:-48519683 | MsG0380013961.01.T01:CDS |
| GGAATCAATGTAGGACTTAT+TGG | 0.263649 | 3:-48518883 | MsG0380013961.01.T01:CDS |
| ACGAGCTATACTTGGGATTC+AGG | 0.269809 | 3:-48517891 | MsG0380013961.01.T01:intron |
| AGCACTGAATCGAGGTATTC+AGG | 0.270037 | 3:-48518713 | MsG0380013961.01.T01:CDS |
| GATCTATTACAAGATCAATT+TGG | 0.270369 | 3:-48519213 | MsG0380013961.01.T01:CDS |
| GATTCATAAGTGGTTGTTAA+TGG | 0.270524 | 3:+48519090 | None:intergenic |
| CGATCTAAAACTTGAGATAA+TGG | 0.281648 | 3:+48519051 | None:intergenic |
| ATAATTCGAGGAACTATATC+TGG | 0.305120 | 3:-48519165 | MsG0380013961.01.T01:CDS |
| GCATCATTATGCTCGATAAA+AGG | 0.305503 | 3:+48518574 | None:intergenic |
| GGGAGAAAATTGAGTTATTT+GGG | 0.307341 | 3:-48519000 | MsG0380013961.01.T01:CDS |
| AATTCCGTACATAAAGATTC+AGG | 0.323867 | 3:+48519450 | None:intergenic |
| CGCCAAGTGGCCTTAGATTC+AGG | 0.326928 | 3:-48518463 | MsG0380013961.01.T01:CDS |
| TGTTGGCGGTGAACTCGCTT+TGG | 0.329325 | 3:-48518236 | MsG0380013961.01.T01:CDS |
| CGCATTTACCTTTATGAACC+TGG | 0.329782 | 3:+48518296 | None:intergenic |
| AACGATCTTTCCTGCGTGTT+CGG | 0.330632 | 3:+48518426 | None:intergenic |
| TCACGCAAGGATTGGTCCTT+GGG | 0.341088 | 3:-48518848 | MsG0380013961.01.T01:CDS |
| GTCAAGCAGTTCCTCTTTCT+CGG | 0.344262 | 3:-48518519 | MsG0380013961.01.T01:CDS |
| CTGGGATCTTGGGTAGAAAC+AGG | 0.344385 | 3:-48517986 | MsG0380013961.01.T01:CDS |
| TCAGTCTTCGGTTCATATTT+CGG | 0.349155 | 3:+48519379 | None:intergenic |
| CCATGAACTATTTGGGTCAA+TGG | 0.354074 | 3:+48519021 | None:intergenic |
| CGGTCCGAAAAGTGCATTGT+TGG | 0.359288 | 3:-48518499 | MsG0380013961.01.T01:CDS |
| AGCGGGAACTCCTGAATCTA+AGG | 0.364603 | 3:+48518453 | None:intergenic |
| TATGCTCGATAAAAGGAATC+AGG | 0.367331 | 3:+48518581 | None:intergenic |
| TTGTCGATAAAACTCCAAAA+TGG | 0.374690 | 3:+48519503 | None:intergenic |
| TTGGGTCCTGGAGGATTGAC+GGG | 0.382208 | 3:-48518982 | MsG0380013961.01.T01:CDS |
| TGGGGAAATTGAAAATGCTT+GGG | 0.386996 | 3:-48520181 | MsG0380013961.01.T01:CDS |
| ACAGCTGCGGATCATTTGAT+TGG | 0.389432 | 3:-48519306 | MsG0380013961.01.T01:CDS |
| AATTGAAAATGCTTGGGGTT+GGG | 0.394420 | 3:-48520175 | MsG0380013961.01.T01:CDS |
| GTTGGCGGTGAACTCGCTTT+GGG | 0.396452 | 3:-48518235 | MsG0380013961.01.T01:CDS |
| AAATTGTATTTGATTCAATC+CGG | 0.398373 | 3:+48520130 | None:intergenic |
| ATTCCTTCCGAGGTGTCAAT+TGG | 0.403361 | 3:+48518901 | None:intergenic |
| AGATTATTACGAGCTATACT+TGG | 0.409704 | 3:-48517899 | MsG0380013961.01.T01:CDS |
| TGTAGGACTTATTGGATCCT+TGG | 0.411030 | 3:-48518875 | MsG0380013961.01.T01:CDS |
| TCTAACTATTGCATGGGAAC+AGG | 0.414074 | 3:-48518653 | MsG0380013961.01.T01:CDS |
| GAAAAGTGCATTGTTGGAAC+TGG | 0.419529 | 3:-48518493 | MsG0380013961.01.T01:CDS |
| TTCACGCAAGGATTGGTCCT+TGG | 0.420745 | 3:-48518849 | MsG0380013961.01.T01:CDS |
| CATTCCTCTAATGAATTCCC+TGG | 0.423604 | 3:-48519859 | MsG0380013961.01.T01:CDS |
| TTTGGGTCCTGGAGGATTGA+CGG | 0.423824 | 3:-48518983 | MsG0380013961.01.T01:CDS |
| ATGGGGAAATTGAAAATGCT+TGG | 0.425882 | 3:-48520182 | MsG0380013961.01.T01:CDS |
| GAATTGTGATTCTGGGATCT+TGG | 0.426630 | 3:-48517997 | MsG0380013961.01.T01:CDS |
| GTCTAAATTTCGGAGTAAAT+GGG | 0.428736 | 3:+48518027 | None:intergenic |
| TATGTCTTTCCTCAATGAAA+AGG | 0.429238 | 3:-48519556 | MsG0380013961.01.T01:CDS |
| AACTATTTGGGTCAATGGAT+TGG | 0.429624 | 3:+48519026 | None:intergenic |
| GTATATCAATGTTCAGTCTT+CGG | 0.430453 | 3:+48519367 | None:intergenic |
| CCATTGACCCAAATAGTTCA+TGG | 0.431227 | 3:-48519021 | MsG0380013961.01.T01:CDS |
| AAGTAGAGATGAATACTATA+TGG | 0.431841 | 3:-48518755 | MsG0380013961.01.T01:CDS |
| ATGCTTGGGGTTGGGAATGA+AGG | 0.438598 | 3:-48520167 | MsG0380013961.01.T01:CDS |
| TGGCACAATAATATCCGATT+GGG | 0.439186 | 3:-48519727 | MsG0380013961.01.T01:CDS |
| GAGGATTCTTTCGCCATTTG+AGG | 0.441108 | 3:+48517938 | None:intergenic |
| CATAAAGATTCAGGAAATAT+GGG | 0.442441 | 3:+48519459 | None:intergenic |
| AATTGAATTTCAGTTATTTG+TGG | 0.443334 | 3:-48520027 | MsG0380013961.01.T01:CDS |
| GATATCCATCCTAGTCACTA+TGG | 0.449002 | 3:-48518934 | MsG0380013961.01.T01:CDS |
| TTGAATCAAATACAATTTGA+AGG | 0.449617 | 3:-48520125 | MsG0380013961.01.T01:CDS |
| GTTCCCAGGGAATTCATTAG+AGG | 0.450312 | 3:+48519855 | None:intergenic |
| AAATTGAGTTATTTGGGTCC+TGG | 0.453699 | 3:-48518994 | MsG0380013961.01.T01:CDS |
| AACGGAATTTCAGTCTATAC+TGG | 0.455189 | 3:-48519747 | MsG0380013961.01.T01:CDS |
| AAATTGAAAATGCTTGGGGT+TGG | 0.457271 | 3:-48520176 | MsG0380013961.01.T01:CDS |
| GCTCGTAATAATCTATCTTC+CGG | 0.462719 | 3:+48517908 | None:intergenic |
| GGGTAAATTAACGCCTCAAA+TGG | 0.467677 | 3:-48517951 | MsG0380013961.01.T01:CDS |
| GATCTAAAACTTGAGATAAT+GGG | 0.468332 | 3:+48519052 | None:intergenic |
| ATTTGTGGAAACATATCAAT+TGG | 0.470517 | 3:-48520012 | MsG0380013961.01.T01:CDS |
| ATTACAAGATCAATTTGGAT+TGG | 0.471878 | 3:-48519208 | MsG0380013961.01.T01:CDS |
| CATTTACTATAGAAGTTCCC+AGG | 0.473812 | 3:+48519841 | None:intergenic |
| TCTAGTTCTATCATCAGCTA+TGG | 0.479428 | 3:-48519628 | MsG0380013961.01.T01:CDS |
| AAGAATTTCTAACTATTGCA+TGG | 0.481440 | 3:-48518660 | MsG0380013961.01.T01:CDS |
| CCTGCGTGTTCGGCTATAGC+GGG | 0.483049 | 3:+48518436 | None:intergenic |
| CGTTTAGAAAATATAATTCG+AGG | 0.485783 | 3:-48519177 | MsG0380013961.01.T01:CDS |
| AATTGTGATTCTGGGATCTT+GGG | 0.486220 | 3:-48517996 | MsG0380013961.01.T01:CDS |
| AGATGTGAATTAGGAGGGAT+TGG | 0.486416 | 3:-48519405 | MsG0380013961.01.T01:CDS |
| TATAGACTGAAATTCCGTTA+TGG | 0.489213 | 3:+48519751 | None:intergenic |
| ATTGGAATGAAATTTGGAAT+GGG | 0.491267 | 3:-48519288 | MsG0380013961.01.T01:CDS |
| CAACAAAGATGTGAATTAGG+AGG | 0.492034 | 3:-48519411 | MsG0380013961.01.T01:CDS |
| TGGAGGGAAACTAATGAGTT+CGG | 0.494350 | 3:+48517654 | None:intergenic |
| CGTTCAGAGTTGGACCATAA+CGG | 0.495197 | 3:-48519765 | MsG0380013961.01.T01:CDS |
| ATTTCCTGAATCTTTATGTA+CGG | 0.495836 | 3:-48519454 | MsG0380013961.01.T01:CDS |
| TTGGCAATTCACGCAAGGAT+TGG | 0.498707 | 3:-48518856 | MsG0380013961.01.T01:CDS |
| GATTGGAATGAAATTTGGAA+TGG | 0.498930 | 3:-48519289 | MsG0380013961.01.T01:CDS |
| GTGCATTGTTGGAACTGGAT+TGG | 0.504759 | 3:-48518488 | MsG0380013961.01.T01:CDS |
| CTCCTGAATCTAAGGCCACT+TGG | 0.506387 | 3:+48518461 | None:intergenic |
| TATCTATTATCGTTCAGAGT+TGG | 0.510246 | 3:-48519775 | MsG0380013961.01.T01:CDS |
| TGTACTCATTAGTGAACGTC+TGG | 0.512500 | 3:-48518158 | MsG0380013961.01.T01:CDS |
| AACAAAGATGTGAATTAGGA+GGG | 0.512939 | 3:-48519410 | MsG0380013961.01.T01:CDS |
| GTTCGCCCCGTCAATCCTCC+AGG | 0.515843 | 3:+48518976 | None:intergenic |
| TATTAGTAGCTTATATGCCA+TGG | 0.519177 | 3:-48518204 | MsG0380013961.01.T01:CDS |
| ATATAGTATTCATCTCTACT+TGG | 0.523407 | 3:+48518757 | None:intergenic |
| CTGGCACAATAATATCCGAT+TGG | 0.523488 | 3:-48519728 | MsG0380013961.01.T01:CDS |
| TGATAGAAAAGCAAGGATAT+GGG | 0.526528 | 3:-48519682 | MsG0380013961.01.T01:CDS |
| CGACAATTTGCTTGTGTAGG+CGG | 0.527978 | 3:-48519486 | MsG0380013961.01.T01:CDS |
| CTAGTTCTATCATCAGCTAT+GGG | 0.528023 | 3:-48519627 | MsG0380013961.01.T01:CDS |
| GCATTTACCTTTATGAACCT+GGG | 0.530323 | 3:+48518297 | None:intergenic |
| GCAGATGGTGCTGCTACTGT+TGG | 0.531919 | 3:-48518253 | MsG0380013961.01.T01:CDS |
| TGAATCAAATACAATTTGAA+GGG | 0.532005 | 3:-48520124 | MsG0380013961.01.T01:CDS |
| AATTCTTGACGGTATCGAGC+TGG | 0.536702 | 3:+48518676 | None:intergenic |
| CAATAGTTAGAAATTCTTGA+CGG | 0.539101 | 3:+48518665 | None:intergenic |
| GGATATGGGCTCGTGTAAGT+AGG | 0.539731 | 3:-48519668 | MsG0380013961.01.T01:CDS |
| TAATCTATCTTCCGGAGCAT+AGG | 0.540322 | 3:+48517916 | None:intergenic |
| TCTATCTTCCGGAGCATAGG+AGG | 0.540370 | 3:+48517919 | None:intergenic |
| TAGAAATTGATAGAAAAGCA+AGG | 0.548786 | 3:-48519689 | MsG0380013961.01.T01:CDS |
| TCCTGCGTGTTCGGCTATAG+CGG | 0.549505 | 3:+48518435 | None:intergenic |
| AGAATTTCTAACTATTGCAT+GGG | 0.549733 | 3:-48518659 | MsG0380013961.01.T01:CDS |
| AATTGTATTTGATTCAATCC+GGG | 0.549785 | 3:+48520131 | None:intergenic |
| TAGTGATTCTTTCAGGACCA+TGG | 0.551937 | 3:+48518071 | None:intergenic |
| GAATACTATATGGTAGCGAC+GGG | 0.553560 | 3:-48518745 | MsG0380013961.01.T01:CDS |
| GATGGTGCTGCTACTGTTGG+CGG | 0.553778 | 3:-48518250 | MsG0380013961.01.T01:CDS |
| TATCGACAATTTGCTTGTGT+AGG | 0.554239 | 3:-48519489 | MsG0380013961.01.T01:CDS |
| CATTGACCCAAATAGTTCAT+GGG | 0.556065 | 3:-48519020 | MsG0380013961.01.T01:CDS |
| GATTATTACGAGCTATACTT+GGG | 0.558504 | 3:-48517898 | MsG0380013961.01.T01:CDS |
| ATCTTGTAATAGATCTGCTA+CGG | 0.559735 | 3:+48519221 | None:intergenic |
| TCTGAATTATATATATCCGC+GGG | 0.562320 | 3:-48519936 | MsG0380013961.01.T01:CDS |
| GTCACTAAATTCTGAGGAGT+AGG | 0.563396 | 3:+48519120 | None:intergenic |
| AATCAAATATTGCAAAGCCC+TGG | 0.569397 | 3:-48519798 | MsG0380013961.01.T01:CDS |
| GAAAGAATCCTCCTATGCTC+CGG | 0.570879 | 3:-48517927 | MsG0380013961.01.T01:CDS |
| TGAATACTATATGGTAGCGA+CGG | 0.571395 | 3:-48518746 | MsG0380013961.01.T01:CDS |
| TCTATAGAAGAGTTATCTAT+CGG | 0.571448 | 3:+48517689 | None:intergenic |
| CACAATAATATCCGATTGGG+GGG | 0.571960 | 3:-48519724 | MsG0380013961.01.T01:CDS |
| TCCTACATTGATTCCTTCCG+AGG | 0.572209 | 3:+48518891 | None:intergenic |
| CAAATGCGTCCATAGTGACT+AGG | 0.573493 | 3:+48518925 | None:intergenic |
| CTCTGAATTATATATATCCG+CGG | 0.577667 | 3:-48519937 | MsG0380013961.01.T01:CDS |
| CAGACTCATGTGACAAGCCA+TGG | 0.581560 | 3:-48518088 | MsG0380013961.01.T01:CDS |
| AGTAAATGGGCTTCTAGATG+TGG | 0.584284 | 3:+48518040 | None:intergenic |
| TGTCCAATTGACACCTCGGA+AGG | 0.584582 | 3:-48518904 | MsG0380013961.01.T01:CDS |
| GTCTTTCCTCAATGAAAAGG+AGG | 0.586724 | 3:-48519553 | MsG0380013961.01.T01:CDS |
| CGCGGATATATATAATTCAG+AGG | 0.586801 | 3:+48519938 | None:intergenic |
| ATTTACTATAGAAGTTCCCA+GGG | 0.587463 | 3:+48519842 | None:intergenic |
| ATGCTCGATAAAAGGAATCA+GGG | 0.587469 | 3:+48518582 | None:intergenic |
| TCTGAACGATAATAGATACC+AGG | 0.589979 | 3:+48519780 | None:intergenic |
| TGGGATCTTGGGTAGAAACA+GGG | 0.592045 | 3:-48517985 | MsG0380013961.01.T01:CDS |
| TCAGAATTGTAACCTTCCCA+TGG | 0.596416 | 3:+48518187 | None:intergenic |
| ATTAGTAGCTTATATGCCAT+GGG | 0.596673 | 3:-48518203 | MsG0380013961.01.T01:CDS |
| ATTCCTCTAATGAATTCCCT+GGG | 0.606971 | 3:-48519858 | MsG0380013961.01.T01:CDS |
| CACGCAAGGATTGGTCCTTG+GGG | 0.608804 | 3:-48518847 | MsG0380013961.01.T01:CDS |
| GTAGCTTATATGCCATGGGA+AGG | 0.611195 | 3:-48518199 | MsG0380013961.01.T01:CDS |
| GATCCTTGGCAATTCACGCA+AGG | 0.614349 | 3:-48518861 | MsG0380013961.01.T01:CDS |
| AACTGGATTGGAACGCCAAG+TGG | 0.615266 | 3:-48518476 | MsG0380013961.01.T01:CDS |
| GTTGAAGTCACTAAATTCTG+AGG | 0.617323 | 3:+48519114 | None:intergenic |
| AATCCTTGCGTGAATTGCCA+AGG | 0.621341 | 3:+48518858 | None:intergenic |
| CATTTGTCCAATTGACACCT+CGG | 0.622149 | 3:-48518908 | MsG0380013961.01.T01:CDS |
| TGCGTCCATAGTGACTAGGA+TGG | 0.626242 | 3:+48518929 | None:intergenic |
| GGCACAATAATATCCGATTG+GGG | 0.627268 | 3:-48519726 | MsG0380013961.01.T01:CDS |
| GAAGGAATGTCTACACTACC+CGG | 0.627870 | 3:-48520149 | MsG0380013961.01.T01:CDS |
| ACGCAAGGATTGGTCCTTGG+GGG | 0.629421 | 3:-48518846 | MsG0380013961.01.T01:CDS |
| TTGAGTTATTTGGGTCCTGG+AGG | 0.630319 | 3:-48518991 | MsG0380013961.01.T01:CDS |
| TGGGTCCTGGAGGATTGACG+GGG | 0.631061 | 3:-48518981 | MsG0380013961.01.T01:CDS |
| GGGATCTTGGGTAGAAACAG+GGG | 0.635116 | 3:-48517984 | MsG0380013961.01.T01:CDS |
| ACAATAATATCCGATTGGGG+GGG | 0.637953 | 3:-48519723 | MsG0380013961.01.T01:CDS |
| CTGAACGATAATAGATACCA+GGG | 0.641198 | 3:+48519781 | None:intergenic |
| ACCTCGGAAGGAATCAATGT+AGG | 0.642821 | 3:-48518892 | MsG0380013961.01.T01:CDS |
| GGGGAAATTGAAAATGCTTG+GGG | 0.643696 | 3:-48520180 | MsG0380013961.01.T01:CDS |
| GCACAATAATATCCGATTGG+GGG | 0.683666 | 3:-48519725 | MsG0380013961.01.T01:CDS |
| CCCGCTATAGCCGAACACGC+AGG | 0.684746 | 3:-48518436 | MsG0380013961.01.T01:CDS |
| GCGAGATATATTGACAGCTG+CGG | 0.702124 | 3:-48519319 | MsG0380013961.01.T01:CDS |
| GCAGCTGTCAATATATCTCG+CGG | 0.702925 | 3:+48519321 | None:intergenic |
| ACTGAATCGAGGTATTCAGG+AGG | 0.734798 | 3:-48518710 | MsG0380013961.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CAAGAACAAATTATTTTTAT+TGG | - | Chr3:48517961-48517980 | MsG0380013961.01.T01:CDS | 15.0% |
| !!! | CAATAAAAATAATTTGTTCT+TGG | + | Chr3:48517963-48517982 | None:intergenic | 15.0% |
| !! | AAAAGGAGGAAAAAAAAATA+GGG | - | Chr3:48518307-48518326 | MsG0380013961.01.T01:CDS | 20.0% |
| !! | AAATTGTATTTGATTCAATC+CGG | + | Chr3:48517719-48517738 | None:intergenic | 20.0% |
| !! | AATTGAATTTCAGTTATTTG+TGG | - | Chr3:48517819-48517838 | MsG0380013961.01.T01:intron | 20.0% |
| !! | TAACAAAAATGTATTGTTCT+CGG | + | Chr3:48518505-48518524 | None:intergenic | 20.0% |
| !! | TGAATCAAATACAATTTGAA+GGG | - | Chr3:48517722-48517741 | MsG0380013961.01.T01:intron | 20.0% |
| !! | TTGAATCAAATACAATTTGA+AGG | - | Chr3:48517721-48517740 | MsG0380013961.01.T01:intron | 20.0% |
| !!! | AAGATCATTTTATTTGGAAA+TGG | - | Chr3:48519458-48519477 | MsG0380013961.01.T01:CDS | 20.0% |
| !!! | AGATCATTTTATTTGGAAAT+GGG | - | Chr3:48519459-48519478 | MsG0380013961.01.T01:CDS | 20.0% |
| !!! | ATTAATTTGGAAAAACAGTA+GGG | - | Chr3:48517933-48517952 | MsG0380013961.01.T01:CDS | 20.0% |
| !!! | ATTTTATTAGTGATTCTTTC+AGG | + | Chr3:48519785-48519804 | None:intergenic | 20.0% |
| !!! | TTCCATTTTTGTCTAAATTT+CGG | + | Chr3:48519832-48519851 | None:intergenic | 20.0% |
| ! | AAAAATGGAATTGTGATTCT+GGG | - | Chr3:48519842-48519861 | MsG0380013961.01.T01:CDS | 25.0% |
| ! | AAAGGTAAATGCGTAAAAAA+GGG | - | Chr3:48519560-48519579 | MsG0380013961.01.T01:CDS | 25.0% |
| ! | AACAAAAATGTATTGTTCTC+GGG | + | Chr3:48518504-48518523 | None:intergenic | 25.0% |
| ! | AAGAATTTCTAACTATTGCA+TGG | - | Chr3:48519186-48519205 | MsG0380013961.01.T01:CDS | 25.0% |
| ! | AAGCTCCAATAGAAAAATAT+TGG | + | Chr3:48519244-48519263 | None:intergenic | 25.0% |
| ! | AAGTAGAGATGAATACTATA+TGG | - | Chr3:48519091-48519110 | MsG0380013961.01.T01:CDS | 25.0% |
| ! | AATTGTATTTGATTCAATCC+GGG | + | Chr3:48517718-48517737 | None:intergenic | 25.0% |
| ! | ACATAAAGATTCAGGAAATA+TGG | + | Chr3:48518391-48518410 | None:intergenic | 25.0% |
| ! | AGAATTTCTAACTATTGCAT+GGG | - | Chr3:48519187-48519206 | MsG0380013961.01.T01:CDS | 25.0% |
| ! | AGGAAAGACATAAAAATTTC+GGG | + | Chr3:48518282-48518301 | None:intergenic | 25.0% |
| ! | AGTAATGTGTCAAGAAAAAT+TGG | + | Chr3:48520084-48520103 | None:intergenic | 25.0% |
| ! | ATATAGTATTCATCTCTACT+TGG | + | Chr3:48519092-48519111 | None:intergenic | 25.0% |
| ! | ATTACAAGATCAATTTGGAT+TGG | - | Chr3:48518638-48518657 | MsG0380013961.01.T01:CDS | 25.0% |
| ! | ATTTCCTGAATCTTTATGTA+CGG | - | Chr3:48518392-48518411 | MsG0380013961.01.T01:CDS | 25.0% |
| ! | ATTTGTGGAAACATATCAAT+TGG | - | Chr3:48517834-48517853 | MsG0380013961.01.T01:intron | 25.0% |
| ! | CAATAGTTAGAAATTCTTGA+CGG | + | Chr3:48519184-48519203 | None:intergenic | 25.0% |
| ! | CATAAAGATTCAGGAAATAT+GGG | + | Chr3:48518390-48518409 | None:intergenic | 25.0% |
| ! | CATTTGATTGGAATGAAATT+TGG | - | Chr3:48518552-48518571 | MsG0380013961.01.T01:CDS | 25.0% |
| ! | CCAATAGAAAAATATTGGAA+GGG | + | Chr3:48519239-48519258 | None:intergenic | 25.0% |
| ! | CGTTTAGAAAATATAATTCG+AGG | - | Chr3:48518669-48518688 | MsG0380013961.01.T01:CDS | 25.0% |
| ! | CTCTCAGAAATTTCAAAAAA+CGG | + | Chr3:48519038-48519057 | None:intergenic | 25.0% |
| ! | GAAAAGGAGGAAAAAAAAAT+AGG | - | Chr3:48518306-48518325 | MsG0380013961.01.T01:CDS | 25.0% |
| ! | GAACGTTGATATCTAATTAA+TGG | + | Chr3:48519500-48519519 | None:intergenic | 25.0% |
| ! | GAGGAAAGACATAAAAATTT+CGG | + | Chr3:48518283-48518302 | None:intergenic | 25.0% |
| ! | GATCTATTACAAGATCAATT+TGG | - | Chr3:48518633-48518652 | MsG0380013961.01.T01:CDS | 25.0% |
| ! | GTTTCCAAAAATTGAAGATA+CGG | - | Chr3:48517789-48517808 | MsG0380013961.01.T01:intron | 25.0% |
| ! | TAAAGGTAAATGCGTAAAAA+AGG | - | Chr3:48519559-48519578 | MsG0380013961.01.T01:CDS | 25.0% |
| ! | TAGAAATTGATAGAAAAGCA+AGG | - | Chr3:48518157-48518176 | MsG0380013961.01.T01:CDS | 25.0% |
| ! | TCCAATAGAAAAATATTGGA+AGG | + | Chr3:48519240-48519259 | None:intergenic | 25.0% |
| ! | TCTATAGAAGAGTTATCTAT+CGG | + | Chr3:48520160-48520179 | None:intergenic | 25.0% |
| ! | TTTCAACAAAGATGTGAATT+AGG | - | Chr3:48518432-48518451 | MsG0380013961.01.T01:CDS | 25.0% |
| !! | ACTGACAAGATCATTTTATT+TGG | - | Chr3:48519452-48519471 | MsG0380013961.01.T01:CDS | 25.0% |
| !! | ATTGGAATGAAATTTGGAAT+GGG | - | Chr3:48518558-48518577 | MsG0380013961.01.T01:CDS | 25.0% |
| !! | GATCTAAAACTTGAGATAAT+GGG | + | Chr3:48518797-48518816 | None:intergenic | 25.0% |
| !! | GATTAATTTGGAAAAACAGT+AGG | - | Chr3:48517932-48517951 | MsG0380013961.01.T01:CDS | 25.0% |
| !!! | TAGATCTACTTGTTGTTAAT+AGG | - | Chr3:48520117-48520136 | MsG0380013961.01.T01:CDS | 25.0% |
| AACAAAGATGTGAATTAGGA+GGG | - | Chr3:48518436-48518455 | MsG0380013961.01.T01:CDS | 30.0% | |
| AATTCCGTACATAAAGATTC+AGG | + | Chr3:48518399-48518418 | None:intergenic | 30.0% | |
| AGATTATTACGAGCTATACT+TGG | - | Chr3:48519947-48519966 | MsG0380013961.01.T01:CDS | 30.0% | |
| ATAATTCGAGGAACTATATC+TGG | - | Chr3:48518681-48518700 | MsG0380013961.01.T01:CDS | 30.0% | |
| ATCTTGTAATAGATCTGCTA+CGG | + | Chr3:48518628-48518647 | None:intergenic | 30.0% | |
| ATTAGTAGCTTATATGCCAT+GGG | - | Chr3:48519643-48519662 | MsG0380013961.01.T01:CDS | 30.0% | |
| ATTTACTATAGAAGTTCCCA+GGG | + | Chr3:48518007-48518026 | None:intergenic | 30.0% | |
| CAAAAATGGAATTGTGATTC+TGG | - | Chr3:48519841-48519860 | MsG0380013961.01.T01:CDS | 30.0% | |
| CTCCGAAATTTAGACAAAAA+TGG | - | Chr3:48519827-48519846 | MsG0380013961.01.T01:CDS | 30.0% | |
| CTCTGAATTATATATATCCG+CGG | - | Chr3:48517909-48517928 | MsG0380013961.01.T01:CDS | 30.0% | |
| GATTATTACGAGCTATACTT+GGG | - | Chr3:48519948-48519967 | MsG0380013961.01.T01:CDS | 30.0% | |
| GATTCATAAGTGGTTGTTAA+TGG | + | Chr3:48518759-48518778 | None:intergenic | 30.0% | |
| GATTGGAATGAAATTTGGAA+TGG | - | Chr3:48518557-48518576 | MsG0380013961.01.T01:CDS | 30.0% | |
| GGAAAGACATAAAAATTTCG+GGG | + | Chr3:48518281-48518300 | None:intergenic | 30.0% | |
| GGGAGAAAATTGAGTTATTT+GGG | - | Chr3:48518846-48518865 | MsG0380013961.01.T01:CDS | 30.0% | |
| GTATATCAATGTTCAGTCTT+CGG | + | Chr3:48518482-48518501 | None:intergenic | 30.0% | |
| GTCTAAATTTCGGAGTAAAT+GGG | + | Chr3:48519822-48519841 | None:intergenic | 30.0% | |
| TATAGACTGAAATTCCGTTA+TGG | + | Chr3:48518098-48518117 | None:intergenic | 30.0% | |
| TATCTATTATCGTTCAGAGT+TGG | - | Chr3:48518071-48518090 | MsG0380013961.01.T01:CDS | 30.0% | |
| TATGTCTTTCCTCAATGAAA+AGG | - | Chr3:48518290-48518309 | MsG0380013961.01.T01:CDS | 30.0% | |
| TATTAGTAGCTTATATGCCA+TGG | - | Chr3:48519642-48519661 | MsG0380013961.01.T01:CDS | 30.0% | |
| TCCAAAAAACGATTCATAAG+TGG | + | Chr3:48518769-48518788 | None:intergenic | 30.0% | |
| TCTGAATTATATATATCCGC+GGG | - | Chr3:48517910-48517929 | MsG0380013961.01.T01:CDS | 30.0% | |
| TGATAGAAAAGCAAGGATAT+GGG | - | Chr3:48518164-48518183 | MsG0380013961.01.T01:CDS | 30.0% | |
| TGGGAGAAAATTGAGTTATT+TGG | - | Chr3:48518845-48518864 | MsG0380013961.01.T01:CDS | 30.0% | |
| TGTCTAAATTTCGGAGTAAA+TGG | + | Chr3:48519823-48519842 | None:intergenic | 30.0% | |
| TTGATAGAAAAGCAAGGATA+TGG | - | Chr3:48518163-48518182 | MsG0380013961.01.T01:CDS | 30.0% | |
| TTGTCGATAAAACTCCAAAA+TGG | + | Chr3:48518346-48518365 | None:intergenic | 30.0% | |
| ! | ACTTGTCTAAAACTACCTAT+AGG | - | Chr3:48519995-48520014 | MsG0380013961.01.T01:CDS | 30.0% |
| ! | AGCATCTTTTTCTTTTATCG+AGG | + | Chr3:48517866-48517885 | None:intergenic | 30.0% |
| ! | ATTTTCTCCCATGAACTATT+TGG | + | Chr3:48518836-48518855 | None:intergenic | 30.0% |
| ! | CCCTTCCAATATTTTTCTAT+TGG | - | Chr3:48519236-48519255 | MsG0380013961.01.T01:CDS | 30.0% |
| ! | CGATCTAAAACTTGAGATAA+TGG | + | Chr3:48518798-48518817 | None:intergenic | 30.0% |
| ! | GCATCTTTTTCTTTTATCGA+GGG | + | Chr3:48517865-48517884 | None:intergenic | 30.0% |
| ! | GTTTTGTAGATTCATTGATC+GGG | - | Chr3:48517744-48517763 | MsG0380013961.01.T01:intron | 30.0% |
| ! | TGATCCGTATCTTCAATTTT+TGG | + | Chr3:48517796-48517815 | None:intergenic | 30.0% |
| ! | TTTTAGACAAGTTTCCTTTG+AGG | + | Chr3:48519987-48520006 | None:intergenic | 30.0% |
| ! | TTTTCTCCCATGAACTATTT+GGG | + | Chr3:48518835-48518854 | None:intergenic | 30.0% |
| ! | TTTTGTAGATTCATTGATCG+GGG | - | Chr3:48517745-48517764 | MsG0380013961.01.T01:intron | 30.0% |
| !! | ATGCATGCAAGTATTTTTGT+TGG | + | Chr3:48519522-48519541 | None:intergenic | 30.0% |
| !! | GGTTTTGTAGATTCATTGAT+CGG | - | Chr3:48517743-48517762 | MsG0380013961.01.T01:intron | 30.0% |
| !! | GTCAAAAGAAAATGCCATTT+TGG | - | Chr3:48518329-48518348 | MsG0380013961.01.T01:CDS | 30.0% |
| !!! | AATTTTTTAGCACTGAATCG+AGG | - | Chr3:48519125-48519144 | MsG0380013961.01.T01:CDS | 30.0% |
| !!! | ACCACTTATGAATCGTTTTT+TGG | - | Chr3:48518765-48518784 | MsG0380013961.01.T01:CDS | 30.0% |
| !!! | TTTTTTCCTCCTTTTCATTG+AGG | + | Chr3:48518302-48518321 | None:intergenic | 30.0% |
| AAAACTACCTATAGGTGGTA+GGG | - | Chr3:48520003-48520022 | MsG0380013961.01.T01:CDS | 35.0% | |
| AAATTGAAAATGCTTGGGGT+TGG | - | Chr3:48517670-48517689 | MsG0380013961.01.T01:CDS | 35.0% | |
| AAATTGAGTTATTTGGGTCC+TGG | - | Chr3:48518852-48518871 | MsG0380013961.01.T01:CDS | 35.0% | |
| AACGGAATTTCAGTCTATAC+TGG | - | Chr3:48518099-48518118 | MsG0380013961.01.T01:CDS | 35.0% | |
| AACTATTTGGGTCAATGGAT+TGG | + | Chr3:48518823-48518842 | None:intergenic | 35.0% | |
| AATCAAATATTGCAAAGCCC+TGG | - | Chr3:48518048-48518067 | MsG0380013961.01.T01:CDS | 35.0% | |
| AATTGAAAATGCTTGGGGTT+GGG | - | Chr3:48517671-48517690 | MsG0380013961.01.T01:CDS | 35.0% | |
| AGATGGATCCAAAAAAAAGC+AGG | - | Chr3:48520043-48520062 | MsG0380013961.01.T01:CDS | 35.0% | |
| ATATATCCGCGGGATTAATT+TGG | - | Chr3:48517920-48517939 | MsG0380013961.01.T01:CDS | 35.0% | |
| ATGCTCGATAAAAGGAATCA+GGG | + | Chr3:48519267-48519286 | None:intergenic | 35.0% | |
| ATGGGGAAATTGAAAATGCT+TGG | - | Chr3:48517664-48517683 | MsG0380013961.01.T01:CDS | 35.0% | |
| ATTCCTCTAATGAATTCCCT+GGG | - | Chr3:48517988-48518007 | MsG0380013961.01.T01:CDS | 35.0% | |
| CAAAAATCCCAGGTTCATAA+AGG | - | Chr3:48519542-48519561 | MsG0380013961.01.T01:CDS | 35.0% | |
| CAACAAAGATGTGAATTAGG+AGG | - | Chr3:48518435-48518454 | MsG0380013961.01.T01:CDS | 35.0% | |
| CATTGACCCAAATAGTTCAT+GGG | - | Chr3:48518826-48518845 | MsG0380013961.01.T01:CDS | 35.0% | |
| CATTTACTATAGAAGTTCCC+AGG | + | Chr3:48518008-48518027 | None:intergenic | 35.0% | |
| CGCGGATATATATAATTCAG+AGG | + | Chr3:48517911-48517930 | None:intergenic | 35.0% | |
| CTGAACGATAATAGATACCA+GGG | + | Chr3:48518068-48518087 | None:intergenic | 35.0% | |
| CTGGGAACTTCTATAGTAAA+TGG | - | Chr3:48518006-48518025 | MsG0380013961.01.T01:CDS | 35.0% | |
| GCATCATTATGCTCGATAAA+AGG | + | Chr3:48519275-48519294 | None:intergenic | 35.0% | |
| GCATTTACCTTTATGAACCT+GGG | + | Chr3:48519552-48519571 | None:intergenic | 35.0% | |
| GCTCGTAATAATCTATCTTC+CGG | + | Chr3:48519941-48519960 | None:intergenic | 35.0% | |
| GGAATCAATGTAGGACTTAT+TGG | - | Chr3:48518963-48518982 | MsG0380013961.01.T01:CDS | 35.0% | |
| GTTGAAGTCACTAAATTCTG+AGG | + | Chr3:48518735-48518754 | None:intergenic | 35.0% | |
| TAAAACTACCTATAGGTGGT+AGG | - | Chr3:48520002-48520021 | MsG0380013961.01.T01:CDS | 35.0% | |
| TATGCTCGATAAAAGGAATC+AGG | + | Chr3:48519268-48519287 | None:intergenic | 35.0% | |
| TCAGTCTTCGGTTCATATTT+CGG | + | Chr3:48518470-48518489 | None:intergenic | 35.0% | |
| TCCATCTCACATCAATAACT+CGG | + | Chr3:48520030-48520049 | None:intergenic | 35.0% | |
| TCTGAACGATAATAGATACC+AGG | + | Chr3:48518069-48518088 | None:intergenic | 35.0% | |
| TGGCACAATAATATCCGATT+GGG | - | Chr3:48518119-48518138 | MsG0380013961.01.T01:CDS | 35.0% | |
| TGGGGAAATTGAAAATGCTT+GGG | - | Chr3:48517665-48517684 | MsG0380013961.01.T01:CDS | 35.0% | |
| ! | AGTTCCAACAATGCACTTTT+CGG | + | Chr3:48519354-48519373 | None:intergenic | 35.0% |
| ! | GTTTTTCCAAATTAATCCCG+CGG | + | Chr3:48517929-48517948 | None:intergenic | 35.0% |
| ! | TATCGACAATTTGCTTGTGT+AGG | - | Chr3:48518357-48518376 | MsG0380013961.01.T01:CDS | 35.0% |
| ! | TGAATACTATATGGTAGCGA+CGG | - | Chr3:48519100-48519119 | MsG0380013961.01.T01:CDS | 35.0% |
| ! | TGTCTAAAACTACCTATAGG+TGG | - | Chr3:48519998-48520017 | MsG0380013961.01.T01:CDS | 35.0% |
| !! | AAGGGACAAATTTTAGCAGA+TGG | - | Chr3:48519578-48519597 | MsG0380013961.01.T01:CDS | 35.0% |
| !! | AATTGTGATTCTGGGATCTT+GGG | - | Chr3:48519850-48519869 | MsG0380013961.01.T01:CDS | 35.0% |
| !! | AGAAACAGGGGATATTTTAG+TGG | - | Chr3:48519874-48519893 | MsG0380013961.01.T01:CDS | 35.0% |
| !! | CTAGTTCTATCATCAGCTAT+GGG | - | Chr3:48518219-48518238 | MsG0380013961.01.T01:CDS | 35.0% |
| !! | TCTAGTTCTATCATCAGCTA+TGG | - | Chr3:48518218-48518237 | MsG0380013961.01.T01:CDS | 35.0% |
| !!! | GAAACAGGGGATATTTTAGT+GGG | - | Chr3:48519875-48519894 | MsG0380013961.01.T01:CDS | 35.0% |
| AAAATTGGTACAAGAAGCCG+TGG | + | Chr3:48520069-48520088 | None:intergenic | 40.0% | |
| AAACTACCTATAGGTGGTAG+GGG | - | Chr3:48520004-48520023 | MsG0380013961.01.T01:CDS | 40.0% | |
| AACAAGTAGATCTACACCAG+GGG | + | Chr3:48520111-48520130 | None:intergenic | 40.0% | |
| ACAACAAGTAGATCTACACC+AGG | + | Chr3:48520113-48520132 | None:intergenic | 40.0% | |
| ACAATAATATCCGATTGGGG+GGG | - | Chr3:48518123-48518142 | MsG0380013961.01.T01:CDS | 40.0% | |
| AGATGTGAATTAGGAGGGAT+TGG | - | Chr3:48518441-48518460 | MsG0380013961.01.T01:CDS | 40.0% | |
| ATCCAAAAAAAAGCAGGCCA+CGG | - | Chr3:48520049-48520068 | MsG0380013961.01.T01:CDS | 40.0% | |
| CAACAAGTAGATCTACACCA+GGG | + | Chr3:48520112-48520131 | None:intergenic | 40.0% | |
| CACAATAATATCCGATTGGG+GGG | - | Chr3:48518122-48518141 | MsG0380013961.01.T01:CDS | 40.0% | |
| CATTCCTCTAATGAATTCCC+TGG | - | Chr3:48517987-48518006 | MsG0380013961.01.T01:CDS | 40.0% | |
| CATTTGTCCAATTGACACCT+CGG | - | Chr3:48518938-48518957 | MsG0380013961.01.T01:CDS | 40.0% | |
| CCATGAACTATTTGGGTCAA+TGG | + | Chr3:48518828-48518847 | None:intergenic | 40.0% | |
| CCATTGACCCAAATAGTTCA+TGG | - | Chr3:48518825-48518844 | MsG0380013961.01.T01:CDS | 40.0% | |
| CGCATTTACCTTTATGAACC+TGG | + | Chr3:48519553-48519572 | None:intergenic | 40.0% | |
| CTGGCACAATAATATCCGAT+TGG | - | Chr3:48518118-48518137 | MsG0380013961.01.T01:CDS | 40.0% | |
| GATATCCATCCTAGTCACTA+TGG | - | Chr3:48518912-48518931 | MsG0380013961.01.T01:CDS | 40.0% | |
| GCACAATAATATCCGATTGG+GGG | - | Chr3:48518121-48518140 | MsG0380013961.01.T01:CDS | 40.0% | |
| GGCACAATAATATCCGATTG+GGG | - | Chr3:48518120-48518139 | MsG0380013961.01.T01:CDS | 40.0% | |
| GGGGAAATTGAAAATGCTTG+GGG | - | Chr3:48517666-48517685 | MsG0380013961.01.T01:CDS | 40.0% | |
| GGGTAAATTAACGCCTCAAA+TGG | - | Chr3:48519895-48519914 | MsG0380013961.01.T01:CDS | 40.0% | |
| GTCTTTCCTCAATGAAAAGG+AGG | - | Chr3:48518293-48518312 | MsG0380013961.01.T01:CDS | 40.0% | |
| TAATCTATCTTCCGGAGCAT+AGG | + | Chr3:48519933-48519952 | None:intergenic | 40.0% | |
| TAGTGATTCTTTCAGGACCA+TGG | + | Chr3:48519778-48519797 | None:intergenic | 40.0% | |
| TCAGAATTGTAACCTTCCCA+TGG | + | Chr3:48519662-48519681 | None:intergenic | 40.0% | |
| TCTAACTATTGCATGGGAAC+AGG | - | Chr3:48519193-48519212 | MsG0380013961.01.T01:CDS | 40.0% | |
| TGACACATTACTAATTCCCC+TGG | - | Chr3:48520092-48520111 | MsG0380013961.01.T01:CDS | 40.0% | |
| TGTACTCATTAGTGAACGTC+TGG | - | Chr3:48519688-48519707 | MsG0380013961.01.T01:CDS | 40.0% | |
| TGTAGGACTTATTGGATCCT+TGG | - | Chr3:48518971-48518990 | MsG0380013961.01.T01:CDS | 40.0% | |
| TTGCATGCATCAAAAATCCC+AGG | - | Chr3:48519532-48519551 | MsG0380013961.01.T01:CDS | 40.0% | |
| ! | AGTAAATGGGCTTCTAGATG+TGG | + | Chr3:48519809-48519828 | None:intergenic | 40.0% |
| ! | GAAAAGTGCATTGTTGGAAC+TGG | - | Chr3:48519353-48519372 | MsG0380013961.01.T01:CDS | 40.0% |
| ! | GAATACTATATGGTAGCGAC+GGG | - | Chr3:48519101-48519120 | MsG0380013961.01.T01:CDS | 40.0% |
| ! | GTCACTAAATTCTGAGGAGT+AGG | + | Chr3:48518729-48518748 | None:intergenic | 40.0% |
| !! | GAATTGTGATTCTGGGATCT+TGG | - | Chr3:48519849-48519868 | MsG0380013961.01.T01:CDS | 40.0% |
| !!! | AACTGCTAGTTTTCGGATAC+GGG | - | Chr3:48518890-48518909 | MsG0380013961.01.T01:CDS | 40.0% |
| !!! | GAACTGCTAGTTTTCGGATA+CGG | - | Chr3:48518889-48518908 | MsG0380013961.01.T01:CDS | 40.0% |
| AACGATCTTTCCTGCGTGTT+CGG | + | Chr3:48519423-48519442 | None:intergenic | 45.0% | |
| AATCCTTGCGTGAATTGCCA+AGG | + | Chr3:48518991-48519010 | None:intergenic | 45.0% | |
| ACAGCTGCGGATCATTTGAT+TGG | - | Chr3:48518540-48518559 | MsG0380013961.01.T01:CDS | 45.0% | |
| ACCTCGGAAGGAATCAATGT+AGG | - | Chr3:48518954-48518973 | MsG0380013961.01.T01:CDS | 45.0% | |
| ACGAGCTATACTTGGGATTC+AGG | - | Chr3:48519955-48519974 | MsG0380013961.01.T01:CDS | 45.0% | |
| CAAATGCGTCCATAGTGACT+AGG | + | Chr3:48518924-48518943 | None:intergenic | 45.0% | |
| CGTTCAGAGTTGGACCATAA+CGG | - | Chr3:48518081-48518100 | MsG0380013961.01.T01:CDS | 45.0% | |
| GAAAGAATCCTCCTATGCTC+CGG | - | Chr3:48519919-48519938 | MsG0380013961.01.T01:CDS | 45.0% | |
| GAAGGAATGTCTACACTACC+CGG | - | Chr3:48517697-48517716 | MsG0380013961.01.T01:CDS | 45.0% | |
| GAGGATTCTTTCGCCATTTG+AGG | + | Chr3:48519911-48519930 | None:intergenic | 45.0% | |
| GCAGCTGTCAATATATCTCG+CGG | + | Chr3:48518528-48518547 | None:intergenic | 45.0% | |
| GCCGAGTTATTGATGTGAGA+TGG | - | Chr3:48520026-48520045 | MsG0380013961.01.T01:CDS | 45.0% | |
| GCGAGATATATTGACAGCTG+CGG | - | Chr3:48518527-48518546 | MsG0380013961.01.T01:CDS | 45.0% | |
| GTAGCTTATATGCCATGGGA+AGG | - | Chr3:48519647-48519666 | MsG0380013961.01.T01:CDS | 45.0% | |
| GTCAAGCAGTTCCTCTTTCT+CGG | - | Chr3:48519327-48519346 | MsG0380013961.01.T01:CDS | 45.0% | |
| GTGCATTGTTGGAACTGGAT+TGG | - | Chr3:48519358-48519377 | MsG0380013961.01.T01:CDS | 45.0% | |
| GTTCCCAGGGAATTCATTAG+AGG | + | Chr3:48517994-48518013 | None:intergenic | 45.0% | |
| TGGGATCTTGGGTAGAAACA+GGG | - | Chr3:48519861-48519880 | MsG0380013961.01.T01:CDS | 45.0% | |
| TTGAGTTATTTGGGTCCTGG+AGG | - | Chr3:48518855-48518874 | MsG0380013961.01.T01:CDS | 45.0% | |
| TTGGCAATTCACGCAAGGAT+TGG | - | Chr3:48518990-48519009 | MsG0380013961.01.T01:CDS | 45.0% | |
| ! | AATTCTTGACGGTATCGAGC+TGG | + | Chr3:48519173-48519192 | None:intergenic | 45.0% |
| ! | ACTGAATCGAGGTATTCAGG+AGG | - | Chr3:48519136-48519155 | MsG0380013961.01.T01:CDS | 45.0% |
| ! | AGCACTGAATCGAGGTATTC+AGG | - | Chr3:48519133-48519152 | MsG0380013961.01.T01:CDS | 45.0% |
| ! | ATTCCTTCCGAGGTGTCAAT+TGG | + | Chr3:48518948-48518967 | None:intergenic | 45.0% |
| ! | CGACAATTTGCTTGTGTAGG+CGG | - | Chr3:48518360-48518379 | MsG0380013961.01.T01:CDS | 45.0% |
| !! | GATTCAGGTATCGACCTCAA+AGG | - | Chr3:48519970-48519989 | MsG0380013961.01.T01:CDS | 45.0% |
| !! | TCCTACATTGATTCCTTCCG+AGG | + | Chr3:48518958-48518977 | None:intergenic | 45.0% |
| AGCGGGAACTCCTGAATCTA+AGG | + | Chr3:48519396-48519415 | None:intergenic | 50.0% | |
| ATGCTTGGGGTTGGGAATGA+AGG | - | Chr3:48517679-48517698 | MsG0380013961.01.T01:CDS | 50.0% | |
| CAGACTCATGTGACAAGCCA+TGG | - | Chr3:48519758-48519777 | MsG0380013961.01.T01:CDS | 50.0% | |
| CTCTAATCTTCCCCCCCAAT+CGG | + | Chr3:48518136-48518155 | None:intergenic | 50.0% | |
| CTGGGATCTTGGGTAGAAAC+AGG | - | Chr3:48519860-48519879 | MsG0380013961.01.T01:CDS | 50.0% | |
| GATCCTTGGCAATTCACGCA+AGG | - | Chr3:48518985-48519004 | MsG0380013961.01.T01:CDS | 50.0% | |
| GGACTTTCTATAGACCCCCA+AGG | + | Chr3:48519017-48519036 | None:intergenic | 50.0% | |
| GGATATGGGCTCGTGTAAGT+AGG | - | Chr3:48518178-48518197 | MsG0380013961.01.T01:CDS | 50.0% | |
| GGGATCTTGGGTAGAAACAG+GGG | - | Chr3:48519862-48519881 | MsG0380013961.01.T01:CDS | 50.0% | |
| TCTATCTTCCGGAGCATAGG+AGG | + | Chr3:48519930-48519949 | None:intergenic | 50.0% | |
| TGCGTCCATAGTGACTAGGA+TGG | + | Chr3:48518920-48518939 | None:intergenic | 50.0% | |
| TGTCCAATTGACACCTCGGA+AGG | - | Chr3:48518942-48518961 | MsG0380013961.01.T01:CDS | 50.0% | |
| TTTGGGTCCTGGAGGATTGA+CGG | - | Chr3:48518863-48518882 | MsG0380013961.01.T01:CDS | 50.0% | |
| ! | AACTGGATTGGAACGCCAAG+TGG | - | Chr3:48519370-48519389 | MsG0380013961.01.T01:CDS | 50.0% |
| ! | CACTTTTCGGACCGAGAAAG+AGG | + | Chr3:48519341-48519360 | None:intergenic | 50.0% |
| ! | CGGTCCGAAAAGTGCATTGT+TGG | - | Chr3:48519347-48519366 | MsG0380013961.01.T01:CDS | 50.0% |
| ! | CTCCTGAATCTAAGGCCACT+TGG | + | Chr3:48519388-48519407 | None:intergenic | 50.0% |
| !! | TCACGCAAGGATTGGTCCTT+GGG | - | Chr3:48518998-48519017 | MsG0380013961.01.T01:CDS | 50.0% |
| !! | TTCACGCAAGGATTGGTCCT+TGG | - | Chr3:48518997-48519016 | MsG0380013961.01.T01:CDS | 50.0% |
| !!! | AGCCGTGGCCTGCTTTTTTT+TGG | + | Chr3:48520054-48520073 | None:intergenic | 50.0% |
| GTTGGCGGTGAACTCGCTTT+GGG | - | Chr3:48519611-48519630 | MsG0380013961.01.T01:CDS | 55.0% | |
| TCCTGCGTGTTCGGCTATAG+CGG | + | Chr3:48519414-48519433 | None:intergenic | 55.0% | |
| TGTTGGCGGTGAACTCGCTT+TGG | - | Chr3:48519610-48519629 | MsG0380013961.01.T01:CDS | 55.0% | |
| TTGGGTCCTGGAGGATTGAC+GGG | - | Chr3:48518864-48518883 | MsG0380013961.01.T01:CDS | 55.0% | |
| ! | CGCCAAGTGGCCTTAGATTC+AGG | - | Chr3:48519383-48519402 | MsG0380013961.01.T01:CDS | 55.0% |
| !! | ACGCAAGGATTGGTCCTTGG+GGG | - | Chr3:48519000-48519019 | MsG0380013961.01.T01:CDS | 55.0% |
| !! | CACGCAAGGATTGGTCCTTG+GGG | - | Chr3:48518999-48519018 | MsG0380013961.01.T01:CDS | 55.0% |
| !! | GATGGTGCTGCTACTGTTGG+CGG | - | Chr3:48519596-48519615 | MsG0380013961.01.T01:CDS | 55.0% |
| !! | GCAGATGGTGCTGCTACTGT+TGG | - | Chr3:48519593-48519612 | MsG0380013961.01.T01:CDS | 55.0% |
| !!! | CGGGGCGAACTGCTAGTTTT+CGG | - | Chr3:48518883-48518902 | MsG0380013961.01.T01:CDS | 55.0% |
| ACTCGGCCCCTACCACCTAT+AGG | + | Chr3:48520013-48520032 | None:intergenic | 60.0% | |
| CCTGCGTGTTCGGCTATAGC+GGG | + | Chr3:48519413-48519432 | None:intergenic | 60.0% | |
| TGGGTCCTGGAGGATTGACG+GGG | - | Chr3:48518865-48518884 | MsG0380013961.01.T01:CDS | 60.0% | |
| CCCGCTATAGCCGAACACGC+AGG | - | Chr3:48519410-48519429 | MsG0380013961.01.T01:CDS | 65.0% | |
| GTTCGCCCCGTCAATCCTCC+AGG | + | Chr3:48518873-48518892 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 48517664 | 48520204 | 48517664 | ID=MsG0380013961.01;Name=MsG0380013961.01 |
| Chr3 | mRNA | 48517664 | 48520204 | 48517664 | ID=MsG0380013961.01.T01;Parent=MsG0380013961.01;Name=MsG0380013961.01.T01;_AED=0.50;_eAED=0.51;_QI=0|0|0|1|1|1|2|0|792 |
| Chr3 | exon | 48517892 | 48520204 | 48517892 | ID=MsG0380013961.01.T01:exon:9207;Parent=MsG0380013961.01.T01 |
| Chr3 | exon | 48517664 | 48517729 | 48517664 | ID=MsG0380013961.01.T01:exon:9206;Parent=MsG0380013961.01.T01 |
| Chr3 | CDS | 48517892 | 48520204 | 48517892 | ID=MsG0380013961.01.T01:cds;Parent=MsG0380013961.01.T01 |
| Chr3 | CDS | 48517664 | 48517729 | 48517664 | ID=MsG0380013961.01.T01:cds;Parent=MsG0380013961.01.T01 |
| Gene Sequence |
| Protein sequence |
