AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380014422.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014422.01.T01 MTR_1g099000 61.509 530 139 10 33 519 700 1207 0.0 576
MsG0380014422.01.T01 MTR_1g098970 59.733 524 144 11 40 519 193 693 0.0 559
MsG0380014422.01.T01 MTR_4g006320 56.364 385 125 7 45 407 30 393 3.63e-135 397
MsG0380014422.01.T01 MTR_4g005290 52.273 440 141 13 47 475 7 388 2.36e-124 370
MsG0380014422.01.T01 MTR_7g102950 43.875 351 144 7 79 391 38 373 2.63e-75 243
MsG0380014422.01.T01 MTR_7g101830 42.121 330 145 8 79 377 57 371 1.64e-66 220
MsG0380014422.01.T01 MTR_7g102950 44.407 295 114 6 79 338 38 317 2.47e-58 197
MsG0380014422.01.T01 MTR_4g011840 47.111 225 93 7 71 288 8 213 1.03e-53 188
MsG0380014422.01.T01 MTR_4g011840 46.296 162 68 4 362 519 211 357 4.73e-30 122
MsG0380014422.01.T01 MTR_7g100900 43.684 190 79 6 72 251 10 181 3.11e-33 132
MsG0380014422.01.T01 MTR_7g100900 54.630 108 42 1 412 519 238 338 1.97e-25 109
MsG0380014422.01.T01 MTR_4g076265 50.746 67 30 1 186 252 2 65 5.98e-17 75.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014422.01.T01 AT1G76810 55.578 493 164 7 44 496 669 1146 2.95e-165 502
MsG0380014422.01.T01 AT1G76720 54.184 478 153 8 60 496 608 1060 7.63e-154 470
MsG0380014422.01.T01 AT1G76720 54.184 478 153 8 60 496 641 1093 1.61e-153 470
MsG0380014422.01.T01 AT2G27700 51.935 491 173 10 45 496 11 477 8.01e-148 432
MsG0380014422.01.T01 AT1G21160 50.299 501 190 8 36 496 457 938 1.62e-147 451
MsG0380014422.01.T01 AT2G27700 51.829 492 173 11 45 496 11 478 4.18e-146 428

Find 111 sgRNAs with CRISPR-Local

Find 295 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTACTCCAAAACCATTTC+TGG 0.150136 3:+54608383 MsG0380014422.01.T01:CDS
TCATCTATTTCGTCAATTTA+AGG 0.162437 3:+54612360 MsG0380014422.01.T01:CDS
GGACTTGAACACGCTATTTC+TGG 0.189580 3:+54611974 MsG0380014422.01.T01:CDS
CATTAAATAACTCCCATTAT+TGG 0.192654 3:+54609634 MsG0380014422.01.T01:CDS
CACTGTTCTTGCAACTTTGC+AGG 0.211375 3:+54609864 MsG0380014422.01.T01:CDS
ATTAAATAACTCCCATTATT+GGG 0.220195 3:+54609635 MsG0380014422.01.T01:CDS
ATGTTGTGATATTGCAATTT+TGG 0.224570 3:+54609671 MsG0380014422.01.T01:CDS
ATTTCTCAATCATGGTCTTT+TGG 0.240683 3:-54610603 None:intergenic
CTCAGCACCTTGTTGAATAT+TGG 0.241938 3:-54609574 None:intergenic
TAGCTCATTGGAAGCATTAC+TGG 0.256266 3:+54612129 MsG0380014422.01.T01:CDS
TTCATCACTGCTTCACAAAT+TGG 0.261919 3:-54609925 None:intergenic
TCATCACCACTCGGCTTAAA+AGG 0.270743 3:-54609477 None:intergenic
TTCCCACAGTAAAATGGTTT+TGG 0.271164 3:-54608347 None:intergenic
AAATCATTCCCACAGTAAAA+TGG 0.307603 3:-54608353 None:intergenic
GGATTACAAGGATGGCATTA+AGG 0.323496 3:+54612381 MsG0380014422.01.T01:CDS
TTACCTATTTGCTACATGTT+AGG 0.325330 3:+54609504 MsG0380014422.01.T01:CDS
TTTCATCATCGCCTTGAATA+AGG 0.327808 3:+54609767 MsG0380014422.01.T01:CDS
CGTAAATCCAGAAATGGTTT+TGG 0.334371 3:-54608390 None:intergenic
TGTTATTTCTGTTGTCTCAA+TGG 0.359498 3:+54610578 MsG0380014422.01.T01:CDS
ATAGAGCTGAACCCCAATAA+TGG 0.360111 3:-54609647 None:intergenic
AATGGGAGTTATTTAATGAT+TGG 0.363796 3:-54609629 None:intergenic
TCAAGCTGACTTTCATATAA+AGG 0.365373 3:+54609963 MsG0380014422.01.T01:CDS
TTCTGGCACTAGTTTATTTG+TGG 0.377039 3:+54611991 MsG0380014422.01.T01:CDS
CTGCAAGTTGGCTAGCTTCA+AGG 0.377147 3:-54612297 None:intergenic
CTAACAGGAATATTCACTTC+TGG 0.383023 3:-54612166 None:intergenic
TTACCTAACATGTAGCAAAT+AGG 0.383047 3:-54609507 None:intergenic
GGTGAAGCCTGACGATGATT+TGG 0.385992 3:+54612012 MsG0380014422.01.T01:CDS
TATTGCTCAGTTCAAGTCTC+AGG 0.396407 3:+54610103 MsG0380014422.01.T01:CDS
GCTCGAATTGTGGTAACAAT+TGG 0.397760 3:-54611419 None:intergenic
ACAGGAGTATGCTACTATAT+TGG 0.407838 3:+54612255 MsG0380014422.01.T01:CDS
TTGTGCCAACAGGTGCAATA+AGG 0.411898 3:+54610180 MsG0380014422.01.T01:CDS
AGCATCTACACCTAGCTCAT+TGG 0.414459 3:+54612117 MsG0380014422.01.T01:CDS
TTGAGCAAGTCTCTAGTTTG+TGG 0.428244 3:-54609720 None:intergenic
GCTTCACAAATTGGAGCATT+GGG 0.434497 3:-54609916 None:intergenic
TAGAGCTGAACCCCAATAAT+GGG 0.435596 3:-54609646 None:intergenic
ACATATTCCAAATCATCGTC+AGG 0.436232 3:-54612019 None:intergenic
TGTAATGCTTGGAAAGAAAC+AGG 0.439527 3:+54612237 MsG0380014422.01.T01:CDS
TGCTTCACAAATTGGAGCAT+TGG 0.442708 3:-54609917 None:intergenic
GATGAAGGAACTTTGTGTTA+AGG 0.448417 3:+54611460 MsG0380014422.01.T01:CDS
GACAACAGAAATAACATGTC+CGG 0.452241 3:-54610571 None:intergenic
CTTTCATATAAAGGTCTTTG+AGG 0.455230 3:+54609972 MsG0380014422.01.T01:CDS
TGGAATACTGACCTTATTCA+AGG 0.461275 3:-54609778 None:intergenic
TATTATTTAAACAAAACAAT+GGG 0.461956 3:+54610143 MsG0380014422.01.T01:CDS
GGCTTACATGGACTACGTTA+AGG 0.463624 3:+54612402 MsG0380014422.01.T01:CDS
TTGCAAGTCAAGGTTATTGA+AGG 0.478444 3:+54611238 MsG0380014422.01.T01:CDS
ATACGTAAATTTCTCAATCA+TGG 0.480088 3:-54610611 None:intergenic
GGGAGTTATTTAATGATTGG+TGG 0.481974 3:-54609626 None:intergenic
ACATTCAGCATTGTGCCAAC+AGG 0.483959 3:+54610170 MsG0380014422.01.T01:CDS
GTTAATGGTGTTCTACATGA+AGG 0.485509 3:+54611289 MsG0380014422.01.T01:CDS
AAGCAGTGATGAAGCAGAAT+CGG 0.486153 3:+54609935 MsG0380014422.01.T01:CDS
GTCAAGGTTATTGAAGGCTA+TGG 0.489864 3:+54611244 MsG0380014422.01.T01:CDS
TAGCCAACTTGCAGACGACC+TGG 0.498383 3:+54612306 MsG0380014422.01.T01:CDS
ATTTGATATTTCAGTGGTGA+AGG 0.501007 3:+54610544 MsG0380014422.01.T01:intron
ATGAGCTAGGTGTAGATGCT+TGG 0.503356 3:-54612114 None:intergenic
ACCCTGCGTAAATCCAGAAA+TGG 0.505894 3:-54608396 None:intergenic
ATTGACACCTCATCCGATGA+AGG 0.512151 3:+54611445 MsG0380014422.01.T01:CDS
CAAAGTTCCTTCATCGGATG+AGG 0.517100 3:-54611452 None:intergenic
TCGTCAATTTAAGGATTACA+AGG 0.518865 3:+54612369 MsG0380014422.01.T01:CDS
TCGAATACGATCTAGAAGCT+TGG 0.522606 3:-54609547 None:intergenic
AAGGCCCAGCAGACATGAGT+TGG 0.526277 3:-54609458 None:intergenic
CAATTTAAGGATTACAAGGA+TGG 0.527430 3:+54612373 MsG0380014422.01.T01:CDS
AAAAGCGACCTTGGAAGAAG+TGG 0.529773 3:+54612045 MsG0380014422.01.T01:CDS
GGATGGCATTAAGGCTTACA+TGG 0.531221 3:+54612390 MsG0380014422.01.T01:CDS
TACGTATAGTGAAGACGTGC+TGG 0.533142 3:+54610627 MsG0380014422.01.T01:CDS
TGCCAGAGTTGTTGTAGTTG+AGG 0.537386 3:+54609422 MsG0380014422.01.T01:CDS
TTAAATAACTCCCATTATTG+GGG 0.538697 3:+54609636 MsG0380014422.01.T01:CDS
TGCAAGTTGGCTAGCTTCAA+GGG 0.545874 3:-54612296 None:intergenic
ACGAAGGATGTGATGAAGGC+AGG 0.546463 3:+54612214 MsG0380014422.01.T01:CDS
TTAACACAAAGTTCCTTCAT+CGG 0.546935 3:-54611458 None:intergenic
AAAACCAACTCATGTCTGCT+GGG 0.552708 3:+54609454 MsG0380014422.01.T01:CDS
AAGAAGTGGAGTTATTCTTG+TGG 0.553005 3:+54612059 MsG0380014422.01.T01:CDS
GTCCTCAACTACAACAACTC+TGG 0.553313 3:-54609424 None:intergenic
ATTGCTCAGTTCAAGTCTCA+GGG 0.557151 3:+54610104 MsG0380014422.01.T01:CDS
AGTAATGCTTCCAATGAGCT+AGG 0.564410 3:-54612127 None:intergenic
AGTTACCTTATTGCACCTGT+TGG 0.566159 3:-54610185 None:intergenic
ACAACAGAAATAACATGTCC+GGG 0.568971 3:-54610570 None:intergenic
CAAAGAAATCAAAGCTGTGA+GGG 0.570214 3:+54611842 MsG0380014422.01.T01:CDS
AACCATTTCTGGATTTACGC+AGG 0.573719 3:+54608394 MsG0380014422.01.T01:CDS
GTATTATTTAAACAAAACAA+TGG 0.573987 3:+54610142 MsG0380014422.01.T01:CDS
TTTCAGTGGTGAAGGAATCC+CGG 0.575451 3:+54610552 MsG0380014422.01.T01:intron
ACTTGCAGACGACCTGGGTG+TGG 0.580111 3:+54612312 MsG0380014422.01.T01:CDS
CACCCAGGTCGTCTGCAAGT+TGG 0.584501 3:-54612309 None:intergenic
TGTTCTTGCAACTTTGCAGG+TGG 0.585948 3:+54609867 MsG0380014422.01.T01:CDS
ATGAAGGCAGGTGTAATGCT+TGG 0.590346 3:+54612226 MsG0380014422.01.T01:CDS
ACCATTTCTGGATTTACGCA+GGG 0.592668 3:+54608395 MsG0380014422.01.T01:CDS
TCTATCATCAGCCACAGGGA+TGG 0.593820 3:-54609394 None:intergenic
ATGTTAGGTAATTTCTACAC+TGG 0.595511 3:+54609519 MsG0380014422.01.T01:CDS
GAATAACTCCACTTCTTCCA+AGG 0.599002 3:-54612053 None:intergenic
AAGTGGAGTTATTCTTGTGG+AGG 0.600537 3:+54612062 MsG0380014422.01.T01:CDS
AGAACAGTGTGACAAAATTG+AGG 0.602251 3:-54609850 None:intergenic
AGCCAACTTGCAGACGACCT+GGG 0.612624 3:+54612307 MsG0380014422.01.T01:CDS
GCATACGAAGGATGTGATGA+AGG 0.614810 3:+54612210 MsG0380014422.01.T01:CDS
CAATATTCAACAAGGTGCTG+AGG 0.616143 3:+54609575 MsG0380014422.01.T01:CDS
CGAGAAACCAATATTCAACA+AGG 0.617328 3:+54609567 MsG0380014422.01.T01:CDS
GGGCATCAAGATCATTACCC+AGG 0.630644 3:+54611863 MsG0380014422.01.T01:CDS
TGTCAATAAAGCTCGAATTG+TGG 0.631490 3:-54611429 None:intergenic
TTGTGGAGGATCGACAGTAG+TGG 0.645635 3:+54612076 MsG0380014422.01.T01:CDS
TTGGGACATGCTTTCCAGCG+AGG 0.647366 3:-54609898 None:intergenic
GAGAATCTGCTGATGATGCA+TGG 0.650507 3:+54612437 MsG0380014422.01.T01:CDS
GGTAAGTTCTCATCACCACT+CGG 0.652437 3:-54609486 None:intergenic
TATAGGTCTGGTGCATACGA+AGG 0.654640 3:+54612198 MsG0380014422.01.T01:CDS
AGGATCGACAGTAGTGGTGA+CGG 0.654749 3:+54612082 MsG0380014422.01.T01:CDS
AAAGAAATCAAAGCTGTGAG+GGG 0.659897 3:+54611843 MsG0380014422.01.T01:CDS
AGGTGCTATTTCCATCCCTG+TGG 0.660007 3:+54609383 MsG0380014422.01.T01:intron
AAATAGATGATCAATGACAT+CGG 0.665923 3:-54612347 None:intergenic
AGGTGGATATGATTCCTCGC+TGG 0.668513 3:+54609884 MsG0380014422.01.T01:CDS
TTACATGGACTACGTTAAGG+AGG 0.675391 3:+54612405 MsG0380014422.01.T01:CDS
TTGGTTGTGAACATTATGCG+TGG 0.690749 3:+54609690 MsG0380014422.01.T01:CDS
ACAAAGAAATCAAAGCTGTG+AGG 0.694513 3:+54611841 MsG0380014422.01.T01:CDS
TTGCTCAGTTCAAGTCTCAG+GGG 0.697871 3:+54610105 MsG0380014422.01.T01:CDS
TAGATGATCAATGACATCGG+AGG 0.705929 3:-54612344 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACTAATAAACTTTATAATTT+AGG + Chr3:54611394-54611413 MsG0380014422.01.T01:intron 10.0%
!! ATAAATATTATGTGAAAATA+AGG - Chr3:54610657-54610676 None:intergenic 10.0%
!! CTAATAAACTTTATAATTTA+GGG + Chr3:54611395-54611414 MsG0380014422.01.T01:intron 10.0%
!! TATTATTTAAACAAAACAAT+GGG + Chr3:54610143-54610162 MsG0380014422.01.T01:CDS 10.0%
!! AACTACTTAAATATTATTAG+AGG - Chr3:54611141-54611160 None:intergenic 15.0%
!! AATAAAAATAATATCAACCT+AGG - Chr3:54611607-54611626 None:intergenic 15.0%
!! AGAAAATGGATATATAAAAA+TGG - Chr3:54608513-54608532 None:intergenic 15.0%
!! ATAAAAATAATATCAACCTA+GGG - Chr3:54611606-54611625 None:intergenic 15.0%
!! GTATTATTTAAACAAAACAA+TGG + Chr3:54610142-54610161 MsG0380014422.01.T01:CDS 15.0%
!! TATTCGTTGTTATAAAATTA+CGG - Chr3:54608731-54608750 None:intergenic 15.0%
!! TTTAATATTTGATATTTCAG+TGG + Chr3:54610538-54610557 MsG0380014422.01.T01:intron 15.0%
!! TTTCACATAATATTTATTAG+AGG + Chr3:54610660-54610679 MsG0380014422.01.T01:intron 15.0%
!!! AACATACTATAATTTTATGT+AGG - Chr3:54608322-54608341 None:intergenic 15.0%
!!! ACATACTATAATTTTATGTA+GGG - Chr3:54608321-54608340 None:intergenic 15.0%
!! AGACTTAACTATTATTTAAC+TGG + Chr3:54611196-54611215 MsG0380014422.01.T01:intron 20.0%
!! ATTAAATAACTCCCATTATT+GGG + Chr3:54609635-54609654 MsG0380014422.01.T01:CDS 20.0%
!! CAAATCAAGAAAAACATTAT+TGG - Chr3:54611932-54611951 None:intergenic 20.0%
!! TTAACTATTATTTAACTGGT+GGG + Chr3:54611200-54611219 MsG0380014422.01.T01:intron 20.0%
!! TTATGATATTTGTAACATGA+AGG + Chr3:54611719-54611738 MsG0380014422.01.T01:intron 20.0%
!!! AAAAAACACATAATGGAATT+TGG - Chr3:54609823-54609842 None:intergenic 20.0%
!!! ATAGCTTTTAATACTTTCAA+CGG + Chr3:54608562-54608581 MsG0380014422.01.T01:intron 20.0%
!!! ATCAAATAAAGTTAGTTTGT+TGG + Chr3:54610332-54610351 MsG0380014422.01.T01:intron 20.0%
!!! ATTGATGTTGTTTTAGTTAA+TGG + Chr3:54611274-54611293 MsG0380014422.01.T01:CDS 20.0%
!!! TCAAATAAAGTTAGTTTGTT+GGG + Chr3:54610333-54610352 MsG0380014422.01.T01:intron 20.0%
!!! TTGTTTGGTTTAATATGTAT+GGG + Chr3:54610272-54610291 MsG0380014422.01.T01:intron 20.0%
!!! TTTCTTTCTTTTATTCTAAG+TGG + Chr3:54610022-54610041 MsG0380014422.01.T01:intron 20.0%
!!! TTTGTTTGGTTTAATATGTA+TGG + Chr3:54610271-54610290 MsG0380014422.01.T01:intron 20.0%
! AAACAAGAAAGAAAGAGAAA+CGG - Chr3:54609128-54609147 None:intergenic 25.0%
! AAATAGATGATCAATGACAT+CGG - Chr3:54612350-54612369 None:intergenic 25.0%
! AACCTGTAAAAAACACATAA+TGG - Chr3:54609830-54609849 None:intergenic 25.0%
! AAGTAATGTTGTCTAATTTC+AGG + Chr3:54611803-54611822 MsG0380014422.01.T01:intron 25.0%
! AATGGGAGTTATTTAATGAT+TGG - Chr3:54609632-54609651 None:intergenic 25.0%
! AGTAATGTTGTCTAATTTCA+GGG + Chr3:54611804-54611823 MsG0380014422.01.T01:intron 25.0%
! AGTCATAAACTCACATAATA+AGG + Chr3:54610699-54610718 MsG0380014422.01.T01:intron 25.0%
! AGTTTCCAACATTTATCATT+TGG - Chr3:54611689-54611708 None:intergenic 25.0%
! ATACGTAAATTTCTCAATCA+TGG - Chr3:54610614-54610633 None:intergenic 25.0%
! ATGATAAATGTTGGAAACTT+AGG + Chr3:54611690-54611709 MsG0380014422.01.T01:intron 25.0%
! CATTAAATAACTCCCATTAT+TGG + Chr3:54609634-54609653 MsG0380014422.01.T01:CDS 25.0%
! CTTAACTATTATTTAACTGG+TGG + Chr3:54611199-54611218 MsG0380014422.01.T01:intron 25.0%
! GATAATTTAGTAAGAGTAGA+GGG + Chr3:54610423-54610442 MsG0380014422.01.T01:intron 25.0%
! GCTTAATTACATAAATCTTC+AGG + Chr3:54608807-54608826 MsG0380014422.01.T01:intron 25.0%
! GGTAATGCTAAATCTAAAAA+AGG + Chr3:54608473-54608492 MsG0380014422.01.T01:intron 25.0%
! TAAAAGAATAGGACAGAAAA+TGG - Chr3:54608527-54608546 None:intergenic 25.0%
! TAAACAGAGAAAAATTAGCA+TGG - Chr3:54610074-54610093 None:intergenic 25.0%
! TCACATAATAAGGAGAATAA+AGG + Chr3:54610709-54610728 MsG0380014422.01.T01:intron 25.0%
! TCATCTATTTCGTCAATTTA+AGG + Chr3:54612360-54612379 MsG0380014422.01.T01:CDS 25.0%
! TTAAATAACTCCCATTATTG+GGG + Chr3:54609636-54609655 MsG0380014422.01.T01:CDS 25.0%
!! ATGTTGTGATATTGCAATTT+TGG + Chr3:54609671-54609690 MsG0380014422.01.T01:CDS 25.0%
!! ATTAGTGTATGTGTTATTGA+TGG - Chr3:54608771-54608790 None:intergenic 25.0%
!! CTGTAACTTAAGTATTGTTT+GGG + Chr3:54611631-54611650 MsG0380014422.01.T01:intron 25.0%
!!! AAGTGAATGTATTGATTCAT+CGG - Chr3:54610862-54610881 None:intergenic 25.0%
!!! TGTTGTTTTACATCAATAGT+GGG - Chr3:54609307-54609326 None:intergenic 25.0%
!!! TTCCATTATGTGTTTTTTAC+AGG + Chr3:54609825-54609844 MsG0380014422.01.T01:intron 25.0%
!!! TTGTTGTTTTACATCAATAG+TGG - Chr3:54609308-54609327 None:intergenic 25.0%
AAAAGCAAATGAGAGAAGAA+CGG + Chr3:54609027-54609046 MsG0380014422.01.T01:intron 30.0%
AAATCATTCCCACAGTAAAA+TGG - Chr3:54608356-54608375 None:intergenic 30.0%
ACATCTTCCTAATTCTTTGT+CGG + Chr3:54610498-54610517 MsG0380014422.01.T01:intron 30.0%
ATAAAGTTTATTAGTCCGAG+AGG - Chr3:54611389-54611408 None:intergenic 30.0%
ATAGCAAGTAAAGTTGTTCA+CGG + Chr3:54611753-54611772 MsG0380014422.01.T01:intron 30.0%
ATATGTTAAAAAAGCGACCT+TGG + Chr3:54612036-54612055 MsG0380014422.01.T01:CDS 30.0%
ATGTTAGGTAATTTCTACAC+TGG + Chr3:54609519-54609538 MsG0380014422.01.T01:CDS 30.0%
ATTTGATATTTCAGTGGTGA+AGG + Chr3:54610544-54610563 MsG0380014422.01.T01:intron 30.0%
CAATTTAAGGATTACAAGGA+TGG + Chr3:54612373-54612392 MsG0380014422.01.T01:CDS 30.0%
CACACATCTGTTAAAAGAAT+AGG - Chr3:54608538-54608557 None:intergenic 30.0%
CCAAACAATACTTAAGTTAC+AGG - Chr3:54611633-54611652 None:intergenic 30.0%
CCTGTTAGCACTAAAAATAT+AGG + Chr3:54612181-54612200 MsG0380014422.01.T01:CDS 30.0%
CTTTCATATAAAGGTCTTTG+AGG + Chr3:54609972-54609991 MsG0380014422.01.T01:CDS 30.0%
GGATAATTTAGTAAGAGTAG+AGG + Chr3:54610422-54610441 MsG0380014422.01.T01:intron 30.0%
TAAAACACCGACAAAGAATT+AGG - Chr3:54610508-54610527 None:intergenic 30.0%
TAAACCAAACAAATCCTAAG+TGG - Chr3:54610264-54610283 None:intergenic 30.0%
TAGCACTAAAAATATAGGTC+TGG + Chr3:54612186-54612205 MsG0380014422.01.T01:CDS 30.0%
TCATGTAACGCTATAGTTAT+GGG - Chr3:54610479-54610498 None:intergenic 30.0%
TCGTCAATTTAAGGATTACA+AGG + Chr3:54612369-54612388 MsG0380014422.01.T01:CDS 30.0%
TCGTTGTTATAAAATTACGG+TGG - Chr3:54608728-54608747 None:intergenic 30.0%
TTAACACAAAGTTCCTTCAT+CGG - Chr3:54611461-54611480 None:intergenic 30.0%
TTACCTAACATGTAGCAAAT+AGG - Chr3:54609510-54609529 None:intergenic 30.0%
TTATCCCTATCAGAAACAAA+TGG - Chr3:54610408-54610427 None:intergenic 30.0%
! AACTTAAGTATTGTTTGGGT+AGG + Chr3:54611635-54611654 MsG0380014422.01.T01:intron 30.0%
! ATAAGATTTCTTGTTATCGC+AGG + Chr3:54611952-54611971 MsG0380014422.01.T01:intron 30.0%
! ATGTGTTATTGATGGTTGAA+AGG - Chr3:54608763-54608782 None:intergenic 30.0%
! ATTGATTCATCGGAGAAAAA+CGG - Chr3:54610852-54610871 None:intergenic 30.0%
! ATTTCTCAATCATGGTCTTT+TGG - Chr3:54610606-54610625 None:intergenic 30.0%
! CCTGTAACTTAAGTATTGTT+TGG + Chr3:54611630-54611649 MsG0380014422.01.T01:intron 30.0%
! CTTTCTTTTATTCTAAGTGG+TGG + Chr3:54610025-54610044 MsG0380014422.01.T01:intron 30.0%
! TAAGATTTCTTGTTATCGCA+GGG + Chr3:54611953-54611972 MsG0380014422.01.T01:intron 30.0%
! TATAATTTTATGTAGGGTGC+TGG - Chr3:54608315-54608334 None:intergenic 30.0%
! TCAAGCTGACTTTCATATAA+AGG + Chr3:54609963-54609982 MsG0380014422.01.T01:CDS 30.0%
! TTACCTATTTGCTACATGTT+AGG + Chr3:54609504-54609523 MsG0380014422.01.T01:CDS 30.0%
! TTTGTTGTGAAAGCAAAAAC+TGG + Chr3:54609152-54609171 MsG0380014422.01.T01:intron 30.0%
!! CAACTTTACTTGCTATATCT+CGG - Chr3:54611749-54611768 None:intergenic 30.0%
!! CTATCAAATTTGTTGCTTGA+TGG + Chr3:54611520-54611539 MsG0380014422.01.T01:intron 30.0%
!! GTTGTTTTACATCAATAGTG+GGG - Chr3:54609306-54609325 None:intergenic 30.0%
!! TGTTATTTCTGTTGTCTCAA+TGG + Chr3:54610578-54610597 MsG0380014422.01.T01:CDS 30.0%
!!! CCTATATTTTTAGTGCTAAC+AGG - Chr3:54612184-54612203 None:intergenic 30.0%
AAAGAAATCAAAGCTGTGAG+GGG + Chr3:54611843-54611862 MsG0380014422.01.T01:CDS 35.0%
AACGTTCTATCTTCATTGTG+CGG - Chr3:54610978-54610997 None:intergenic 35.0%
AAGAAGTGGAGTTATTCTTG+TGG + Chr3:54612059-54612078 MsG0380014422.01.T01:CDS 35.0%
AATACTTACTTTCTGCCTCT+CGG + Chr3:54611371-54611390 MsG0380014422.01.T01:intron 35.0%
AATAGTTGTATCTGGATTGC+AGG + Chr3:54611318-54611337 MsG0380014422.01.T01:intron 35.0%
ACAAAGAAATCAAAGCTGTG+AGG + Chr3:54611841-54611860 MsG0380014422.01.T01:CDS 35.0%
ACAACAGAAATAACATGTCC+GGG - Chr3:54610573-54610592 None:intergenic 35.0%
ACATATTCCAAATCATCGTC+AGG - Chr3:54612022-54612041 None:intergenic 35.0%
AGAACAGTGTGACAAAATTG+AGG - Chr3:54609853-54609872 None:intergenic 35.0%
AGGCATTTAGAAACTCGAAT+CGG + Chr3:54611662-54611681 MsG0380014422.01.T01:intron 35.0%
AGGGCTGAATTGTATATTGA+CGG - Chr3:54608928-54608947 None:intergenic 35.0%
ATGGCAAACCTATAAAACCT+TGG + Chr3:54611539-54611558 MsG0380014422.01.T01:intron 35.0%
CAAAGAAATCAAAGCTGTGA+GGG + Chr3:54611842-54611861 MsG0380014422.01.T01:CDS 35.0%
CGAGAAACCAATATTCAACA+AGG + Chr3:54609567-54609586 MsG0380014422.01.T01:CDS 35.0%
CTAACAGGAATATTCACTTC+TGG - Chr3:54612169-54612188 None:intergenic 35.0%
GAAGCAGCAAGTCATAAAAT+TGG - Chr3:54609801-54609820 None:intergenic 35.0%
GACAACAGAAATAACATGTC+CGG - Chr3:54610574-54610593 None:intergenic 35.0%
GATGAAGGAACTTTGTGTTA+AGG + Chr3:54611460-54611479 MsG0380014422.01.T01:CDS 35.0%
GGGAGTTATTTAATGATTGG+TGG - Chr3:54609629-54609648 None:intergenic 35.0%
GGTGATCAAATAGTTGTATC+TGG + Chr3:54611310-54611329 MsG0380014422.01.T01:intron 35.0%
GTATTGTTTGGGTAGGAAAA+AGG + Chr3:54611642-54611661 MsG0380014422.01.T01:intron 35.0%
GTCATGTAACGCTATAGTTA+TGG - Chr3:54610480-54610499 None:intergenic 35.0%
GTTAATGGTGTTCTACATGA+AGG + Chr3:54611289-54611308 MsG0380014422.01.T01:CDS 35.0%
GTTATAAAATTACGGTGGTG+CGG - Chr3:54608723-54608742 None:intergenic 35.0%
GTTTAATATGTATGGGAGAG+TGG + Chr3:54610279-54610298 MsG0380014422.01.T01:intron 35.0%
TAAATCTTCAGGCATACATG+AGG + Chr3:54608818-54608837 MsG0380014422.01.T01:intron 35.0%
TCGGTCCAAATGATAAATGT+TGG + Chr3:54611681-54611700 MsG0380014422.01.T01:intron 35.0%
TGGAATACTGACCTTATTCA+AGG - Chr3:54609781-54609800 None:intergenic 35.0%
TGTAATGCTTGGAAAGAAAC+AGG + Chr3:54612237-54612256 MsG0380014422.01.T01:CDS 35.0%
TGTCAATAAAGCTCGAATTG+TGG - Chr3:54611432-54611451 None:intergenic 35.0%
TTCATCACTGCTTCACAAAT+TGG - Chr3:54609928-54609947 None:intergenic 35.0%
TTGCAAGTCAAGGTTATTGA+AGG + Chr3:54611238-54611257 MsG0380014422.01.T01:CDS 35.0%
TTGTACTCCAAAACCATTTC+TGG + Chr3:54608383-54608402 MsG0380014422.01.T01:CDS 35.0%
TTTATCCATGGTGATTTCCA+TGG + Chr3:54610904-54610923 MsG0380014422.01.T01:intron 35.0%
TTTCAACAGATATGCTTGTG+CGG - Chr3:54608849-54608868 None:intergenic 35.0%
TTTCATCATCGCCTTGAATA+AGG + Chr3:54609767-54609786 MsG0380014422.01.T01:CDS 35.0%
! ACAGGAGTATGCTACTATAT+TGG + Chr3:54612255-54612274 MsG0380014422.01.T01:CDS 35.0%
! ACTCCAAAACCATTTTACTG+TGG + Chr3:54608344-54608363 MsG0380014422.01.T01:CDS 35.0%
! CGTAAATCCAGAAATGGTTT+TGG - Chr3:54608393-54608412 None:intergenic 35.0%
! CTCCAAAACCATTTTACTGT+GGG + Chr3:54608345-54608364 MsG0380014422.01.T01:CDS 35.0%
! TTCCCACAGTAAAATGGTTT+TGG - Chr3:54608350-54608369 None:intergenic 35.0%
! TTCTGGCACTAGTTTATTTG+TGG + Chr3:54611991-54612010 MsG0380014422.01.T01:CDS 35.0%
!! GTTATGGACCAAGGTTTTAT+AGG - Chr3:54611550-54611569 None:intergenic 35.0%
!! TGCTCCATTTGTTTCTGATA+GGG + Chr3:54610401-54610420 MsG0380014422.01.T01:intron 35.0%
!!! AATGGCAAATCCTTGTTTTC+GGG + Chr3:54610448-54610467 MsG0380014422.01.T01:intron 35.0%
!!! CAATGGCAAATCCTTGTTTT+CGG + Chr3:54610447-54610466 MsG0380014422.01.T01:intron 35.0%
AAAAACCAACTCATGTCTGC+TGG + Chr3:54609453-54609472 MsG0380014422.01.T01:CDS 40.0%
AAAACCAACTCATGTCTGCT+GGG + Chr3:54609454-54609473 MsG0380014422.01.T01:CDS 40.0%
AACAAATCCTAAGTGGATGC+AGG - Chr3:54610257-54610276 None:intergenic 40.0%
AAGCAGTGATGAAGCAGAAT+CGG + Chr3:54609935-54609954 MsG0380014422.01.T01:CDS 40.0%
AAGTGGAGTTATTCTTGTGG+AGG + Chr3:54612062-54612081 MsG0380014422.01.T01:CDS 40.0%
ACTCGATATCACTAAGTACC+TGG - Chr3:54611884-54611903 None:intergenic 40.0%
AGCCCTAACACTGTAAAAAG+GGG + Chr3:54608942-54608961 MsG0380014422.01.T01:intron 40.0%
AGTAATGCTTCCAATGAGCT+AGG - Chr3:54612130-54612149 None:intergenic 40.0%
AGTACAGTAGAAGAAGAGGA+AGG + Chr3:54609053-54609072 MsG0380014422.01.T01:intron 40.0%
AGTTACCTTATTGCACCTGT+TGG - Chr3:54610188-54610207 None:intergenic 40.0%
ATAGAGCTGAACCCCAATAA+TGG - Chr3:54609650-54609669 None:intergenic 40.0%
ATGGCGGTTTCAATCTTAGA+TGG + Chr3:54610923-54610942 MsG0380014422.01.T01:intron 40.0%
ATTGCTCAGTTCAAGTCTCA+GGG + Chr3:54610104-54610123 MsG0380014422.01.T01:CDS 40.0%
CAGCCCTAACACTGTAAAAA+GGG + Chr3:54608941-54608960 MsG0380014422.01.T01:intron 40.0%
CTCAGCACCTTGTTGAATAT+TGG - Chr3:54609577-54609596 None:intergenic 40.0%
CTCGATATCACTAAGTACCT+GGG - Chr3:54611883-54611902 None:intergenic 40.0%
CTGATCCAGACTCCTAAAAA+AGG + Chr3:54609271-54609290 MsG0380014422.01.T01:intron 40.0%
GAATAACTCCACTTCTTCCA+AGG - Chr3:54612056-54612075 None:intergenic 40.0%
GATAGGGAAACGGAAAATTG+CGG + Chr3:54608991-54609010 MsG0380014422.01.T01:intron 40.0%
GCACTGAAGAAAAAGATCAC+AGG - Chr3:54611115-54611134 None:intergenic 40.0%
GCTCGAATTGTGGTAACAAT+TGG - Chr3:54611422-54611441 None:intergenic 40.0%
GGATTACAAGGATGGCATTA+AGG + Chr3:54612381-54612400 MsG0380014422.01.T01:CDS 40.0%
GTCAAGGTTATTGAAGGCTA+TGG + Chr3:54611244-54611263 MsG0380014422.01.T01:CDS 40.0%
TAATATGTATGGGAGAGTGG+TGG + Chr3:54610282-54610301 MsG0380014422.01.T01:intron 40.0%
TAGAGCTGAACCCCAATAAT+GGG - Chr3:54609649-54609668 None:intergenic 40.0%
TAGATGATCAATGACATCGG+AGG - Chr3:54612347-54612366 None:intergenic 40.0%
TAGTAAGAGTAGAGGGTCAA+TGG + Chr3:54610430-54610449 MsG0380014422.01.T01:intron 40.0%
TATTGCTCAGTTCAAGTCTC+AGG + Chr3:54610103-54610122 MsG0380014422.01.T01:CDS 40.0%
TCAGCCCTAACACTGTAAAA+AGG + Chr3:54608940-54608959 MsG0380014422.01.T01:intron 40.0%
TCGAATACGATCTAGAAGCT+TGG - Chr3:54609550-54609569 None:intergenic 40.0%
TGCTTCACAAATTGGAGCAT+TGG - Chr3:54609920-54609939 None:intergenic 40.0%
TTCATATTAGCATGCCTTCC+AGG + Chr3:54611776-54611795 MsG0380014422.01.T01:intron 40.0%
TTGGTTGTGAACATTATGCG+TGG + Chr3:54609690-54609709 MsG0380014422.01.T01:CDS 40.0%
! AAACTGGAGCACTTATGTAC+TGG + Chr3:54609246-54609265 MsG0380014422.01.T01:intron 40.0%
! AACCATTTCTGGATTTACGC+AGG + Chr3:54608394-54608413 MsG0380014422.01.T01:CDS 40.0%
! ACCATTTCTGGATTTACGCA+GGG + Chr3:54608395-54608414 MsG0380014422.01.T01:CDS 40.0%
! ACTAGTGATTCTTTTGCCCT+AGG + Chr3:54611587-54611606 MsG0380014422.01.T01:intron 40.0%
! AGAGCTTCAAGCTTTATCCA+TGG + Chr3:54610892-54610911 MsG0380014422.01.T01:intron 40.0%
! ATCTAAGATTGAAACCGCCA+TGG - Chr3:54610924-54610943 None:intergenic 40.0%
! ATGGGTTTTTCCCGAAAACA+AGG - Chr3:54610461-54610480 None:intergenic 40.0%
! GAATTCGATGAGAGTGTGTT+TGG - Chr3:54608897-54608916 None:intergenic 40.0%
! GCATCCACTTAGGATTTGTT+TGG + Chr3:54610257-54610276 MsG0380014422.01.T01:intron 40.0%
! GCTTCACAAATTGGAGCATT+GGG - Chr3:54609919-54609938 None:intergenic 40.0%
! GTGTACTGTTTTGCAAGTCA+AGG + Chr3:54611228-54611247 MsG0380014422.01.T01:intron 40.0%
! GTTTTCTATCATCAGCCACA+GGG - Chr3:54609401-54609420 None:intergenic 40.0%
! TCCCCCTTTTTACAGTGTTA+GGG - Chr3:54608947-54608966 None:intergenic 40.0%
! TGACTTGCAAAACAGTACAC+TGG - Chr3:54611228-54611247 None:intergenic 40.0%
! TGTTTTCTATCATCAGCCAC+AGG - Chr3:54609402-54609421 None:intergenic 40.0%
! TTACATGGACTACGTTAAGG+AGG + Chr3:54612405-54612424 MsG0380014422.01.T01:CDS 40.0%
! TTCCCCCTTTTTACAGTGTT+AGG - Chr3:54608948-54608967 None:intergenic 40.0%
! TTGAGCAAGTCTCTAGTTTG+TGG - Chr3:54609723-54609742 None:intergenic 40.0%
!! CAATATTCAACAAGGTGCTG+AGG + Chr3:54609575-54609594 MsG0380014422.01.T01:CDS 40.0%
!! CTGCTCCATTTGTTTCTGAT+AGG + Chr3:54610400-54610419 MsG0380014422.01.T01:intron 40.0%
!! TAGCTCATTGGAAGCATTAC+TGG + Chr3:54612129-54612148 MsG0380014422.01.T01:CDS 40.0%
!!! GGGAAAAGCACACCTTTTTT+AGG - Chr3:54609286-54609305 None:intergenic 40.0%
!!! TTTGCTTTTTCCTCCACAAC+AGG + Chr3:54609363-54609382 MsG0380014422.01.T01:intron 40.0%
AAAAGCGACCTTGGAAGAAG+TGG + Chr3:54612045-54612064 MsG0380014422.01.T01:CDS 45.0%
AACATTACTTAGCGCCTGGA+AGG - Chr3:54611793-54611812 None:intergenic 45.0%
ACATTCAGCATTGTGCCAAC+AGG + Chr3:54610170-54610189 MsG0380014422.01.T01:CDS 45.0%
ACCCTGCGTAAATCCAGAAA+TGG - Chr3:54608399-54608418 None:intergenic 45.0%
AGAACAGCAGAGAAGAGTGA+CGG + Chr3:54609076-54609095 MsG0380014422.01.T01:intron 45.0%
AGACAACATTACTTAGCGCC+TGG - Chr3:54611797-54611816 None:intergenic 45.0%
AGCAAATGAGAGAAGAACGG+CGG + Chr3:54609030-54609049 MsG0380014422.01.T01:intron 45.0%
AGCATCTACACCTAGCTCAT+TGG + Chr3:54612117-54612136 MsG0380014422.01.T01:CDS 45.0%
AGGAAAAAATTGCCACACCC+AGG - Chr3:54612327-54612346 None:intergenic 45.0%
ATCCATGGTGATTTCCATGG+CGG + Chr3:54610907-54610926 MsG0380014422.01.T01:intron 45.0%
ATCTTCATTGTGCGGAAGCA+GGG - Chr3:54610970-54610989 None:intergenic 45.0%
ATGAAGGCAGGTGTAATGCT+TGG + Chr3:54612226-54612245 MsG0380014422.01.T01:CDS 45.0%
ATGAGCTAGGTGTAGATGCT+TGG - Chr3:54612117-54612136 None:intergenic 45.0%
ATTGACACCTCATCCGATGA+AGG + Chr3:54611445-54611464 MsG0380014422.01.T01:CDS 45.0%
CAAAGTTCCTTCATCGGATG+AGG - Chr3:54611455-54611474 None:intergenic 45.0%
CACAGGATCGAAGAATCACA+AGG - Chr3:54611098-54611117 None:intergenic 45.0%
CACATGCCACTAGATGGTTA+TGG - Chr3:54611566-54611585 None:intergenic 45.0%
CACTAGATGGTTATGGACCA+AGG - Chr3:54611559-54611578 None:intergenic 45.0%
CACTGTTCTTGCAACTTTGC+AGG + Chr3:54609864-54609883 MsG0380014422.01.T01:CDS 45.0%
CAGGAACAAGAACAGCGAAT+AGG - Chr3:54610238-54610257 None:intergenic 45.0%
CTAGTTCACATGCCACTAGA+TGG - Chr3:54611572-54611591 None:intergenic 45.0%
CTTGGTCCATAACCATCTAG+TGG + Chr3:54611557-54611576 MsG0380014422.01.T01:intron 45.0%
GATGGAAATAGCACCTGTTG+TGG - Chr3:54609379-54609398 None:intergenic 45.0%
GCATACGAAGGATGTGATGA+AGG + Chr3:54612210-54612229 MsG0380014422.01.T01:CDS 45.0%
GCCCTAACACTGTAAAAAGG+GGG + Chr3:54608943-54608962 MsG0380014422.01.T01:intron 45.0%
GGAGAAGACTCCAGAATCAA+GGG + Chr3:54610303-54610322 MsG0380014422.01.T01:intron 45.0%
GGATGGCATTAAGGCTTACA+TGG + Chr3:54612390-54612409 MsG0380014422.01.T01:CDS 45.0%
GGTAAGTTCTCATCACCACT+CGG - Chr3:54609489-54609508 None:intergenic 45.0%
GGTCACGTAAACTGGAAAAC+TGG + Chr3:54609230-54609249 MsG0380014422.01.T01:intron 45.0%
GTCCTCAACTACAACAACTC+TGG - Chr3:54609427-54609446 None:intergenic 45.0%
TACGTATAGTGAAGACGTGC+TGG + Chr3:54610627-54610646 MsG0380014422.01.T01:CDS 45.0%
TATAGGTCTGGTGCATACGA+AGG + Chr3:54612198-54612217 MsG0380014422.01.T01:CDS 45.0%
TATCTTCATTGTGCGGAAGC+AGG - Chr3:54610971-54610990 None:intergenic 45.0%
TCATCACCACTCGGCTTAAA+AGG - Chr3:54609480-54609499 None:intergenic 45.0%
TCTTGTTCCTGCATCCACTT+AGG + Chr3:54610247-54610266 MsG0380014422.01.T01:intron 45.0%
TGATCAACCTCCCTTGATTC+TGG - Chr3:54610316-54610335 None:intergenic 45.0%
TGCCAGAGTTGTTGTAGTTG+AGG + Chr3:54609422-54609441 MsG0380014422.01.T01:CDS 45.0%
TGGAGAAGACTCCAGAATCA+AGG + Chr3:54610302-54610321 MsG0380014422.01.T01:intron 45.0%
TGTTCTTGCAACTTTGCAGG+TGG + Chr3:54609867-54609886 MsG0380014422.01.T01:CDS 45.0%
TTGCTCAGTTCAAGTCTCAG+GGG + Chr3:54610105-54610124 MsG0380014422.01.T01:CDS 45.0%
TTGTGCCAACAGGTGCAATA+AGG + Chr3:54610180-54610199 MsG0380014422.01.T01:CDS 45.0%
TTTCAGTGGTGAAGGAATCC+CGG + Chr3:54610552-54610571 MsG0380014422.01.T01:intron 45.0%
! AAGATGATGGCAAGTCGGAT+AGG + Chr3:54608974-54608993 MsG0380014422.01.T01:intron 45.0%
! AGATGATGGCAAGTCGGATA+GGG + Chr3:54608975-54608994 MsG0380014422.01.T01:intron 45.0%
! GAGAATCTGCTGATGATGCA+TGG + Chr3:54612437-54612456 MsG0380014422.01.T01:CDS 45.0%
! GGACTTGAACACGCTATTTC+TGG + Chr3:54611974-54611993 MsG0380014422.01.T01:CDS 45.0%
! GGCTTACATGGACTACGTTA+AGG + Chr3:54612402-54612421 MsG0380014422.01.T01:CDS 45.0%
! TTCGATGAGAGTGTGTTTGG+TGG - Chr3:54608894-54608913 None:intergenic 45.0%
! TTGCGAAGATGATGGCAAGT+CGG + Chr3:54608969-54608988 MsG0380014422.01.T01:intron 45.0%
!! TGCAAGTTGGCTAGCTTCAA+GGG - Chr3:54612299-54612318 None:intergenic 45.0%
!!! GCACACCTTTTTTAGGAGTC+TGG - Chr3:54609279-54609298 None:intergenic 45.0%
AACCGCCATGGAAATCACCA+TGG - Chr3:54610912-54610931 None:intergenic 50.0%
ACCTTTCGTCATGACCAGAG+CGG - Chr3:54608456-54608475 None:intergenic 50.0%
ACGAAGGATGTGATGAAGGC+AGG + Chr3:54612214-54612233 MsG0380014422.01.T01:CDS 50.0%
AGGATCGACAGTAGTGGTGA+CGG + Chr3:54612082-54612101 MsG0380014422.01.T01:CDS 50.0%
AGGGAAACGGAAAATTGCGG+TGG + Chr3:54608994-54609013 MsG0380014422.01.T01:intron 50.0%
AGGTGGATATGATTCCTCGC+TGG + Chr3:54609884-54609903 MsG0380014422.01.T01:CDS 50.0%
CACACATCGGTCACGTAAAC+TGG + Chr3:54609222-54609241 MsG0380014422.01.T01:intron 50.0%
CAGTTACGGTGGTGTAGTAG+TGG - Chr3:54608673-54608692 None:intergenic 50.0%
GAAGACTCCAGAATCAAGGG+AGG + Chr3:54610306-54610325 MsG0380014422.01.T01:intron 50.0%
GCGGAGTACAGTAGAAGAAG+AGG + Chr3:54609049-54609068 MsG0380014422.01.T01:intron 50.0%
GGAAATAGCACCTGTTGTGG+AGG - Chr3:54609376-54609395 None:intergenic 50.0%
GGATTTACGCAGGGTGCATA+AGG + Chr3:54608404-54608423 MsG0380014422.01.T01:intron 50.0%
GGGCATCAAGATCATTACCC+AGG + Chr3:54611863-54611882 MsG0380014422.01.T01:CDS 50.0%
GGGGGAAATTGCGAAGATGA+TGG + Chr3:54608961-54608980 MsG0380014422.01.T01:intron 50.0%
GGTGAAGCCTGACGATGATT+TGG + Chr3:54612012-54612031 MsG0380014422.01.T01:CDS 50.0%
GTGGCAGGGTCAGATTTCAA+CGG - Chr3:54609198-54609217 None:intergenic 50.0%
TCTATCATCAGCCACAGGGA+TGG - Chr3:54609397-54609416 None:intergenic 50.0%
TGGCAAGTCGGATAGGGAAA+CGG + Chr3:54608981-54609000 MsG0380014422.01.T01:intron 50.0%
TTGTGGAGGATCGACAGTAG+TGG + Chr3:54612076-54612095 MsG0380014422.01.T01:CDS 50.0%
!! AGGTGCTATTTCCATCCCTG+TGG + Chr3:54609383-54609402 MsG0380014422.01.T01:intron 50.0%
!! CTGCAAGTTGGCTAGCTTCA+AGG - Chr3:54612300-54612319 None:intergenic 50.0%
AAGGCCCAGCAGACATGAGT+TGG - Chr3:54609461-54609480 None:intergenic 55.0%
ACAGCAGAGAAGAGTGACGG+AGG + Chr3:54609079-54609098 MsG0380014422.01.T01:intron 55.0%
AGCCAACTTGCAGACGACCT+GGG + Chr3:54612307-54612326 MsG0380014422.01.T01:CDS 55.0%
CCTTTCGTCATGACCAGAGC+GGG - Chr3:54608455-54608474 None:intergenic 55.0%
GGGTGCGGTTATGGTGCATA+AGG - Chr3:54608435-54608454 None:intergenic 55.0%
TAGCCAACTTGCAGACGACC+TGG + Chr3:54612306-54612325 MsG0380014422.01.T01:CDS 55.0%
TTGGGACATGCTTTCCAGCG+AGG - Chr3:54609901-54609920 None:intergenic 55.0%
! CAGAGAAGAGTGACGGAGGA+GGG + Chr3:54609083-54609102 MsG0380014422.01.T01:intron 55.0%
ACCGATGTGTGACACGTGGC+AGG - Chr3:54609213-54609232 None:intergenic 60.0%
ACTTGCAGACGACCTGGGTG+TGG + Chr3:54612312-54612331 MsG0380014422.01.T01:CDS 60.0%
ATTGACTGGCAGTGGCACGG+CGG - Chr3:54608699-54608718 None:intergenic 60.0%
CACCCAGGTCGTCTGCAAGT+TGG - Chr3:54612312-54612331 None:intergenic 60.0%
CCCGCTCTGGTCATGACGAA+AGG + Chr3:54608452-54608471 MsG0380014422.01.T01:intron 60.0%
CCCTGCCACGTGTCACACAT+CGG + Chr3:54609209-54609228 MsG0380014422.01.T01:intron 60.0%
CCGATGTGTGACACGTGGCA+GGG - Chr3:54609212-54609231 None:intergenic 60.0%
CGTGACCGATGTGTGACACG+TGG - Chr3:54609217-54609236 None:intergenic 60.0%
! AGAAGAGTGACGGAGGAGGG+CGG + Chr3:54609086-54609105 MsG0380014422.01.T01:intron 60.0%
! GCAGAGAAGAGTGACGGAGG+AGG + Chr3:54609082-54609101 MsG0380014422.01.T01:intron 60.0%
! GCTGGGCCTTTTAAGCCGAG+TGG + Chr3:54609471-54609490 MsG0380014422.01.T01:CDS 60.0%
!! GGCATTGACTGGCAGTGGCA+CGG - Chr3:54608702-54608721 None:intergenic 60.0%
!! TACGGTGGTGCGGCATTGAC+TGG - Chr3:54608713-54608732 None:intergenic 60.0%
CACCATAACCGCACCCGCTC+TGG + Chr3:54608439-54608458 MsG0380014422.01.T01:intron 65.0%
CGTCATGACCAGAGCGGGTG+CGG - Chr3:54608450-54608469 None:intergenic 65.0%
GACCAGAGCGGGTGCGGTTA+TGG - Chr3:54608444-54608463 None:intergenic 65.0%
TGGCACGGCGGCAGCAGTTA+CGG - Chr3:54608687-54608706 None:intergenic 65.0%
!! GGTGCGGCATTGACTGGCAG+TGG - Chr3:54608707-54608726 None:intergenic 65.0%
CACGGCGGCAGCAGTTACGG+TGG - Chr3:54608684-54608703 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr3 gene 54608305 54612462 54608305 ID=MsG0380014422.01;Name=MsG0380014422.01
Chr3 mRNA 54608305 54612462 54608305 ID=MsG0380014422.01.T01;Parent=MsG0380014422.01;Name=MsG0380014422.01.T01;_AED=0.11;_eAED=0.11;_QI=0|0|0|0.88|1|1|9|0|520
Chr3 exon 54608305 54608416 54608305 ID=MsG0380014422.01.T01:exon:10088;Parent=MsG0380014422.01.T01
Chr3 exon 54609385 54609788 54609385 ID=MsG0380014422.01.T01:exon:10089;Parent=MsG0380014422.01.T01
Chr3 exon 54609847 54609993 54609847 ID=MsG0380014422.01.T01:exon:10090;Parent=MsG0380014422.01.T01
Chr3 exon 54610101 54610201 54610101 ID=MsG0380014422.01.T01:exon:10091;Parent=MsG0380014422.01.T01
Chr3 exon 54610558 54610648 54610558 ID=MsG0380014422.01.T01:exon:10092;Parent=MsG0380014422.01.T01
Chr3 exon 54611229 54611321 54611229 ID=MsG0380014422.01.T01:exon:10093;Parent=MsG0380014422.01.T01
Chr3 exon 54611416 54611481 54611416 ID=MsG0380014422.01.T01:exon:10094;Parent=MsG0380014422.01.T01
Chr3 exon 54611825 54611884 54611825 ID=MsG0380014422.01.T01:exon:10095;Parent=MsG0380014422.01.T01
Chr3 exon 54611974 54612462 54611974 ID=MsG0380014422.01.T01:exon:10096;Parent=MsG0380014422.01.T01
Chr3 CDS 54608305 54608416 54608305 ID=MsG0380014422.01.T01:cds;Parent=MsG0380014422.01.T01
Chr3 CDS 54609385 54609788 54609385 ID=MsG0380014422.01.T01:cds;Parent=MsG0380014422.01.T01
Chr3 CDS 54609847 54609993 54609847 ID=MsG0380014422.01.T01:cds;Parent=MsG0380014422.01.T01
Chr3 CDS 54610101 54610201 54610101 ID=MsG0380014422.01.T01:cds;Parent=MsG0380014422.01.T01
Chr3 CDS 54610558 54610648 54610558 ID=MsG0380014422.01.T01:cds;Parent=MsG0380014422.01.T01
Chr3 CDS 54611229 54611321 54611229 ID=MsG0380014422.01.T01:cds;Parent=MsG0380014422.01.T01
Chr3 CDS 54611416 54611481 54611416 ID=MsG0380014422.01.T01:cds;Parent=MsG0380014422.01.T01
Chr3 CDS 54611825 54611884 54611825 ID=MsG0380014422.01.T01:cds;Parent=MsG0380014422.01.T01
Chr3 CDS 54611974 54612462 54611974 ID=MsG0380014422.01.T01:cds;Parent=MsG0380014422.01.T01
Gene Sequence

>MsG0380014422.01.T01

ATGGTTTCCAGCACCCTACATAAAATTATAGTATGTTGTACTCCAAAACCATTTTACTGTGGGAATGATTTCTGTGAGTTGTACTCCAAAACCATTTCTGGATTTACGCAGGGTGCTATTTCCATCCCTGTGGCTGATGATAGAAAACATGCCAGAGTTGTTGTAGTTGAGGACAAAAAGAAAAACCAACTCATGTCTGCTGGGCCTTTTAAGCCGAGTGGTGATGAGAACTTACCTATTTGCTACATGTTAGGTAATTTCTACACTGGCAAAACCAAGCTTCTAGATCGTATTCGAGAAACCAATATTCAACAAGGTGCTGAGGAATATTGCAGTAATACGCTGTTTATTGACCACCAATCATTAAATAACTCCCATTATTGGGGTTCAGCTCTATTATGTTGTGATATTGCAATTTTGGTTGTGAACATTATGCGTGGATTCGAGCCACAAACTAGAGACTTGCTCAATCTATTAAAAACGAGTAACAAAAATTTCATCATCGCCTTGAATAAGGTTCCTCAATTTTGTCACACTGTTCTTGCAACTTTGCAGGTGGATATGATTCCTCGCTGGAAAGCATGTCCCAATGCTCCAATTTGTGAAGCAGTGATGAAGCAGAATCGGCATGTTCAAGCTGACTTTCATATAAAGGTCTTTGAGATTATTGCTCAGTTCAAGTCTCAGGGGCTAAATACTGAATTGTATTATTTAAACAAAACAATGGGAGAAACATTCAGCATTGTGCCAACAGGTGCAATAAGTGGTGAAGGAATCCCGGACATGTTATTTCTGTTGTCTCAATGGATCCAAAAGACCATGATTGAGAAATTTACGTATAGTGAAGACGTGCTGTGTACTGTTTTGCAAGTCAAGGTTATTGAAGGCTATGGAACTACTATTGATGTTGTTTTAGTTAATGGTGTTCTACATGAAGGTGATCAAATAGGTCCAATTGTTACCACAATTCGAGCTTTATTGACACCTCATCCGATGAAGGAACTTTGTGTTAAGGGATCATTTATACATCACAAAGAAATCAAAGCTGTGAGGGGCATCAAGATCATTACCCAGGGACTTGAACACGCTATTTCTGGCACTAGTTTATTTGTGGTGAAGCCTGACGATGATTTGGAATATGTTAAAAAAGCGACCTTGGAAGAAGTGGAGTTATTCTTGTGGAGGATCGACAGTAGTGGTGACGGTGTTTGTGTCCAAGCATCTACACCTAGCTCATTGGAAGCATTACTGGAGTTTTTTAAAACTCCAGAAGTGAATATTCCTGTTAGCACTAAAAATATAGGTCTGGTGCATACGAAGGATGTGATGAAGGCAGGTGTAATGCTTGGAAAGAAACAGGAGTATGCTACTATATTGGCGTTTGATGTCAAAATCACCCTTGAAGCTAGCCAACTTGCAGACGACCTGGGTGTGGCAATTTTTTCCTCCGATGTCATTGATCATCTATTTCGTCAATTTAAGGATTACAAGGATGGCATTAAGGCTTACATGGACTACGTTAAGGAGGAGAAAGAGAGAGAATCTGCTGATGATGCATGGTAG
Protein sequence

>MsG0380014422.01.T01

MVSSTLHKIIVCCTPKPFYCGNDFCELYSKTISGFTQGAISIPVADDRKHARVVVVEDKKKNQLMSAGPFKPSGDENLPICYMLGNFYTGKTKLLDRIRETNIQQGAEEYCSNTLFIDHQSLNNSHYWGSALLCCDIAILVVNIMRGFEPQTRDLLNLLKTSNKNFIIALNKVPQFCHTVLATLQVDMIPRWKACPNAPICEAVMKQNRHVQADFHIKVFEIIAQFKSQGLNTELYYLNKTMGETFSIVPTGAISGEGIPDMLFLLSQWIQKTMIEKFTYSEDVLCTVLQVKVIEGYGTTIDVVLVNGVLHEGDQIGPIVTTIRALLTPHPMKELCVKGSFIHHKEIKAVRGIKIITQGLEHAISGTSLFVVKPDDDLEYVKKATLEEVELFLWRIDSSGDGVCVQASTPSSLEALLEFFKTPEVNIPVSTKNIGLVHTKDVMKAGVMLGKKQEYATILAFDVKITLEASQLADDLGVAIFSSDVIDHLFRQFKDYKDGIKAYMDYVKEEKERESADDAW*