Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380014472.01.T01 | KEH34029.1 | 68.776 | 237 | 55 | 6 | 1 | 234 | 158 | 378 | 4.12E-99 | 303 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380014472.01.T01 | Q3EBZ2 | 44.843 | 223 | 113 | 6 | 19 | 234 | 174 | 393 | 1.47E-50 | 172 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380014472.01.T01 | A0A072UW30 | 68.776 | 237 | 55 | 6 | 1 | 234 | 158 | 378 | 1.97e-99 | 303 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0380011759.01 | MsG0380014472.01 | 0.811176 | 7.978905e-51 | 4.904988e-48 |
| MsG0380013883.01 | MsG0380014472.01 | 0.808434 | 3.103415e-50 | 1.774318e-47 |
| MsG0380014472.01 | MsG0380014977.01 | 0.822970 | 1.781679e-53 | 1.513960e-50 |
| MsG0380014472.01 | MsG0380017312.01 | 0.802184 | 6.328333e-49 | 3.079848e-46 |
| MsG0380014472.01 | MsG0380017822.01 | 0.805299 | 1.427305e-49 | 7.524260e-47 |
| MsG0380014472.01 | MsG0580026222.01 | 0.841956 | 3.469650e-58 | 5.181340e-55 |
| MsG0380014472.01 | MsG0580027332.01 | 0.803293 | 3.735756e-49 | 1.870267e-46 |
| MsG0380014472.01 | MsG0580029204.01 | 0.804119 | 2.517698e-49 | 1.287541e-46 |
| MsG0380014472.01 | MsG0580029381.01 | 0.829387 | 5.297792e-55 | 5.414394e-52 |
| MsG0380014472.01 | MsG0680031380.01 | 0.822520 | 2.266856e-53 | 1.901925e-50 |
| MsG0380014472.01 | MsG0680033038.01 | 0.803231 | 3.847827e-49 | 1.923314e-46 |
| MsG0380014472.01 | MsG0780039282.01 | 0.853314 | 2.594068e-61 | 5.581586e-58 |
| MsG0380014472.01 | MsG0880044644.01 | 0.818980 | 1.476767e-52 | 1.122237e-49 |
| MsG0380014472.01 | MsG0880044788.01 | 0.801903 | 7.228287e-49 | 3.492909e-46 |
| MsG0380014472.01 | MsG0880045045.01 | 0.807321 | 5.352502e-50 | 2.972265e-47 |
| MsG0280006551.01 | MsG0380014472.01 | 0.817953 | 2.523261e-52 | 1.863675e-49 |
| MsG0280008759.01 | MsG0380014472.01 | 0.841002 | 6.185402e-58 | 8.965440e-55 |
| MsG0280009371.01 | MsG0380014472.01 | 0.807731 | 4.380634e-50 | 2.458657e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380014472.01.T01 | MTR_3g058460 | 68.776 | 237 | 55 | 6 | 1 | 234 | 158 | 378 | 4.99e-103 | 303 |
| MsG0380014472.01.T01 | MTR_3g030050 | 56.693 | 254 | 89 | 3 | 1 | 234 | 171 | 423 | 7.29e-92 | 276 |
| MsG0380014472.01.T01 | MTR_3g037710 | 59.535 | 215 | 83 | 2 | 20 | 234 | 55 | 265 | 3.27e-80 | 242 |
| MsG0380014472.01.T01 | MTR_3g029620 | 48.165 | 218 | 87 | 5 | 18 | 232 | 179 | 373 | 4.36e-57 | 186 |
| MsG0380014472.01.T01 | MTR_3g029640 | 47.642 | 212 | 87 | 4 | 22 | 231 | 174 | 363 | 1.67e-54 | 179 |
| MsG0380014472.01.T01 | MTR_3g030560 | 45.327 | 214 | 96 | 5 | 20 | 231 | 178 | 372 | 1.44e-51 | 172 |
| MsG0380014472.01.T01 | MTR_3g092000 | 48.649 | 222 | 78 | 7 | 20 | 231 | 203 | 398 | 7.18e-51 | 171 |
| MsG0380014472.01.T01 | MTR_1g049170 | 45.755 | 212 | 97 | 4 | 20 | 231 | 190 | 383 | 5.73e-50 | 167 |
| MsG0380014472.01.T01 | MTR_2g047180 | 49.020 | 204 | 76 | 6 | 32 | 231 | 186 | 365 | 7.77e-50 | 167 |
| MsG0380014472.01.T01 | MTR_3g029800 | 45.872 | 218 | 87 | 5 | 20 | 232 | 165 | 356 | 1.25e-48 | 163 |
| MsG0380014472.01.T01 | MTR_6g018360 | 45.794 | 214 | 97 | 6 | 23 | 231 | 181 | 380 | 2.50e-47 | 161 |
| MsG0380014472.01.T01 | MTR_6g018390 | 45.771 | 201 | 83 | 4 | 32 | 231 | 190 | 365 | 3.02e-47 | 160 |
| MsG0380014472.01.T01 | MTR_3g030380 | 43.694 | 222 | 96 | 5 | 12 | 231 | 162 | 356 | 1.26e-46 | 158 |
| MsG0380014472.01.T01 | MTR_3g030440 | 45.249 | 221 | 93 | 6 | 12 | 231 | 161 | 354 | 1.33e-46 | 158 |
| MsG0380014472.01.T01 | MTR_3g091990 | 45.581 | 215 | 96 | 5 | 20 | 231 | 189 | 385 | 1.68e-46 | 159 |
| MsG0380014472.01.T01 | MTR_3g030480 | 45.249 | 221 | 93 | 6 | 12 | 231 | 160 | 353 | 1.75e-46 | 158 |
| MsG0380014472.01.T01 | MTR_3g030360 | 46.117 | 206 | 66 | 6 | 27 | 231 | 189 | 350 | 5.99e-46 | 156 |
| MsG0380014472.01.T01 | MTR_3g047980 | 44.444 | 216 | 80 | 6 | 20 | 232 | 182 | 360 | 9.96e-46 | 156 |
| MsG0380014472.01.T01 | MTR_1g016540 | 48.947 | 190 | 70 | 6 | 53 | 232 | 7 | 179 | 1.24e-44 | 148 |
| MsG0380014472.01.T01 | MTR_3g029650 | 45.833 | 216 | 81 | 7 | 27 | 231 | 170 | 360 | 2.71e-44 | 158 |
| MsG0380014472.01.T01 | MTR_3g029650 | 39.904 | 208 | 107 | 5 | 27 | 231 | 557 | 749 | 3.47e-35 | 132 |
| MsG0380014472.01.T01 | MTR_1g026850 | 46.860 | 207 | 86 | 6 | 29 | 231 | 177 | 363 | 4.05e-44 | 152 |
| MsG0380014472.01.T01 | MTR_6g018400 | 43.192 | 213 | 90 | 7 | 23 | 231 | 183 | 368 | 5.63e-44 | 151 |
| MsG0380014472.01.T01 | MTR_4g022880 | 54.054 | 148 | 58 | 3 | 86 | 233 | 36 | 173 | 7.59e-44 | 146 |
| MsG0380014472.01.T01 | MTR_6g018315 | 44.393 | 214 | 100 | 6 | 23 | 231 | 166 | 365 | 1.54e-43 | 151 |
| MsG0380014472.01.T01 | MTR_3g030080 | 49.462 | 186 | 67 | 6 | 51 | 231 | 208 | 371 | 2.49e-43 | 150 |
| MsG0380014472.01.T01 | MTR_6g027040 | 42.857 | 203 | 88 | 6 | 32 | 231 | 198 | 375 | 3.77e-40 | 142 |
| MsG0380014472.01.T01 | MTR_6g027100 | 42.857 | 203 | 88 | 6 | 32 | 231 | 198 | 375 | 1.74e-39 | 141 |
| MsG0380014472.01.T01 | MTR_1g007260 | 45.545 | 202 | 81 | 7 | 31 | 227 | 206 | 383 | 1.76e-39 | 140 |
| MsG0380014472.01.T01 | MTR_3g030355 | 42.035 | 226 | 73 | 10 | 31 | 231 | 201 | 393 | 1.85e-39 | 140 |
| MsG0380014472.01.T01 | MTR_3g029670 | 40.476 | 210 | 95 | 5 | 27 | 231 | 201 | 385 | 2.61e-39 | 140 |
| MsG0380014472.01.T01 | MTR_3g029920 | 42.381 | 210 | 88 | 7 | 30 | 231 | 194 | 378 | 1.07e-38 | 138 |
| MsG0380014472.01.T01 | MTR_3g029750 | 40.094 | 212 | 93 | 7 | 27 | 231 | 201 | 385 | 2.86e-38 | 137 |
| MsG0380014472.01.T01 | MTR_5g042230 | 42.995 | 207 | 96 | 7 | 20 | 222 | 2 | 190 | 1.11e-37 | 130 |
| MsG0380014472.01.T01 | MTR_1g016570 | 40.758 | 211 | 91 | 5 | 24 | 232 | 182 | 360 | 1.30e-37 | 135 |
| MsG0380014472.01.T01 | MTR_3g029900 | 43.367 | 196 | 74 | 5 | 40 | 232 | 297 | 458 | 5.55e-36 | 133 |
| MsG0380014472.01.T01 | MTR_3g029840 | 42.051 | 195 | 73 | 6 | 40 | 231 | 197 | 354 | 1.14e-33 | 124 |
| MsG0380014472.01.T01 | MTR_3g029820 | 43.684 | 190 | 70 | 9 | 51 | 231 | 165 | 326 | 1.91e-33 | 123 |
| MsG0380014472.01.T01 | MTR_3g029950 | 39.524 | 210 | 85 | 5 | 32 | 231 | 189 | 366 | 3.17e-31 | 118 |
| MsG0380014472.01.T01 | MTR_7g005990 | 37.443 | 219 | 92 | 4 | 19 | 231 | 177 | 356 | 5.15e-31 | 117 |
| MsG0380014472.01.T01 | MTR_6g018370 | 44.056 | 143 | 65 | 4 | 31 | 172 | 131 | 259 | 1.46e-29 | 111 |
| MsG0380014472.01.T01 | MTR_3g029870 | 43.169 | 183 | 62 | 5 | 60 | 231 | 182 | 333 | 1.69e-29 | 113 |
| MsG0380014472.01.T01 | MTR_1g007250 | 43.429 | 175 | 75 | 4 | 53 | 224 | 7 | 160 | 1.91e-29 | 108 |
| MsG0380014472.01.T01 | MTR_5g078450 | 44.805 | 154 | 44 | 5 | 81 | 231 | 2 | 117 | 1.76e-26 | 99.8 |
| MsG0380014472.01.T01 | MTR_3g029850 | 45.763 | 118 | 57 | 4 | 117 | 234 | 9 | 119 | 4.86e-26 | 98.2 |
| MsG0380014472.01.T01 | MTR_1g007220 | 36.598 | 194 | 78 | 6 | 31 | 224 | 19 | 167 | 1.74e-24 | 95.9 |
| MsG0380014472.01.T01 | MTR_8g074610 | 31.197 | 234 | 136 | 8 | 3 | 231 | 182 | 395 | 3.22e-23 | 97.1 |
| MsG0380014472.01.T01 | MTR_8g035995 | 46.847 | 111 | 43 | 1 | 56 | 166 | 1 | 95 | 2.30e-21 | 87.0 |
| MsG0380014472.01.T01 | MTR_2g041510 | 32.995 | 197 | 114 | 7 | 1 | 190 | 153 | 338 | 1.86e-20 | 89.0 |
| MsG0380014472.01.T01 | MTR_2g041510 | 32.995 | 197 | 114 | 7 | 1 | 190 | 173 | 358 | 2.31e-20 | 89.0 |
| MsG0380014472.01.T01 | MTR_8g074640 | 33.178 | 214 | 125 | 8 | 1 | 209 | 161 | 361 | 4.21e-19 | 85.1 |
| MsG0380014472.01.T01 | MTR_1g007200 | 50.000 | 78 | 35 | 2 | 121 | 196 | 1 | 76 | 1.19e-15 | 71.2 |
| MsG0380014472.01.T01 | MTR_4g088925 | 30.180 | 222 | 103 | 7 | 27 | 228 | 184 | 373 | 4.22e-13 | 68.2 |
| MsG0380014472.01.T01 | MTR_3g114990 | 28.700 | 223 | 124 | 9 | 28 | 232 | 201 | 406 | 2.69e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380014472.01.T01 | AT2G17030 | 44.843 | 223 | 113 | 6 | 19 | 234 | 174 | 393 | 1.50e-51 | 172 |
| MsG0380014472.01.T01 | AT2G17036 | 38.636 | 220 | 121 | 6 | 19 | 231 | 171 | 383 | 5.08e-38 | 137 |
| MsG0380014472.01.T01 | AT2G17036 | 38.636 | 220 | 121 | 6 | 19 | 231 | 172 | 384 | 5.33e-38 | 137 |
| MsG0380014472.01.T01 | AT5G60060 | 38.365 | 159 | 77 | 6 | 20 | 172 | 179 | 322 | 1.65e-21 | 92.0 |
| MsG0380014472.01.T01 | AT5G24040 | 29.327 | 208 | 125 | 6 | 30 | 231 | 93 | 284 | 2.56e-16 | 76.6 |
| MsG0380014472.01.T01 | AT5G24040 | 29.327 | 208 | 125 | 6 | 30 | 231 | 178 | 369 | 4.64e-16 | 76.6 |
| MsG0380014472.01.T01 | AT2G16290 | 31.429 | 175 | 97 | 6 | 19 | 186 | 195 | 353 | 4.93e-15 | 73.9 |
| MsG0380014472.01.T01 | AT5G24040 | 29.064 | 203 | 122 | 6 | 35 | 231 | 26 | 212 | 1.24e-14 | 70.9 |
Find 51 sgRNAs with CRISPR-Local
Find 70 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGGGAATTGTGTGATATTT+AGG | 0.102064 | 3:-55305584 | MsG0380014472.01.T01:CDS |
| ATGAAGAAATTAGCTGTTTA+TGG | 0.113047 | 3:-55306122 | MsG0380014472.01.T01:CDS |
| CTTCTCACTGTTGATGTTTC+CGG | 0.123374 | 3:-55306062 | MsG0380014472.01.T01:CDS |
| AAAAGACAAACGTCGTTATA+AGG | 0.229907 | 3:+55305975 | None:intergenic |
| TTGGTTGCAGAGTCTGTGTT+TGG | 0.281234 | 3:-55305882 | MsG0380014472.01.T01:CDS |
| TTCTCACTGTTGATGTTTCC+GGG | 0.282416 | 3:-55306061 | MsG0380014472.01.T01:CDS |
| CTCATCCCCGGATTGGAAAA+TGG | 0.296867 | 3:+55306031 | None:intergenic |
| CGGGTTATTCCAAGTTGTTC+TGG | 0.313996 | 3:-55305470 | MsG0380014472.01.T01:CDS |
| ACTAGATTTAAGTTTGGATT+TGG | 0.314622 | 3:-55305901 | MsG0380014472.01.T01:CDS |
| TTCTGCTTCCGCTTCGGAGT+TGG | 0.315659 | 3:-55305616 | MsG0380014472.01.T01:CDS |
| TCGGAGTTGGGTGTGGGAAA+TGG | 0.326684 | 3:-55305603 | MsG0380014472.01.T01:CDS |
| TCTGCTTCCGCTTCGGAGTT+GGG | 0.350866 | 3:-55305615 | MsG0380014472.01.T01:CDS |
| TTGGAAAATGGCAAGTTTCC+CGG | 0.351194 | 3:+55306043 | None:intergenic |
| TGGTTGCAGAGTCTGTGTTT+GGG | 0.360188 | 3:-55305881 | MsG0380014472.01.T01:CDS |
| TGGGAATTGTGTGATATTTA+GGG | 0.369213 | 3:-55305583 | MsG0380014472.01.T01:CDS |
| CTGTGAAATTTGAAGTGTTT+AGG | 0.372157 | 3:-55305719 | MsG0380014472.01.T01:CDS |
| CGGAGTTGGGTGTGGGAAAT+GGG | 0.378097 | 3:-55305602 | MsG0380014472.01.T01:CDS |
| TTCCGCTTCGGAGTTGGGTG+TGG | 0.382277 | 3:-55305610 | MsG0380014472.01.T01:CDS |
| GGTGAAGAATATTACAAGAT+TGG | 0.388431 | 3:-55305753 | MsG0380014472.01.T01:CDS |
| CAATGCAATCCGATCCATTC+CGG | 0.394078 | 3:+55305441 | None:intergenic |
| TATGTTGATGAAATGGTGAT+TGG | 0.440801 | 3:-55305774 | MsG0380014472.01.T01:CDS |
| TGTGGGACTAGATTTAAGTT+TGG | 0.442452 | 3:-55305907 | MsG0380014472.01.T01:CDS |
| GGGAGATAAGAAATTATTAG+TGG | 0.448757 | 3:-55305859 | MsG0380014472.01.T01:CDS |
| GATAAGTATGTAAATTGTCT+TGG | 0.448931 | 3:-55305810 | MsG0380014472.01.T01:CDS |
| TCCACTGCTCATCCCCGGAT+TGG | 0.457333 | 3:+55306024 | None:intergenic |
| CAAGTTGTTCTGGCCACCTC+CGG | 0.467969 | 3:-55305460 | MsG0380014472.01.T01:CDS |
| TTGATGAGAAAGAGAAGAAG+TGG | 0.486881 | 3:-55305695 | MsG0380014472.01.T01:CDS |
| CGGAGGTGGCCAGAACAACT+TGG | 0.495490 | 3:+55305461 | None:intergenic |
| ATATTTAGGGATGATCTTTG+TGG | 0.502898 | 3:-55305570 | MsG0380014472.01.T01:CDS |
| TCCGCTTCGGAGTTGGGTGT+GGG | 0.508125 | 3:-55305609 | MsG0380014472.01.T01:CDS |
| TACCGGTCGGACGGTTGCTG+TGG | 0.511235 | 3:-55305925 | MsG0380014472.01.T01:CDS |
| TATCTTCCACTGCTCATCCC+CGG | 0.531989 | 3:+55306019 | None:intergenic |
| AATCCGATCCATTCCGGAGG+TGG | 0.536007 | 3:+55305447 | None:intergenic |
| GGTTGCAGAGTCTGTGTTTG+GGG | 0.538608 | 3:-55305880 | MsG0380014472.01.T01:CDS |
| TGTTCTGGCCACCTCCGGAA+TGG | 0.548584 | 3:-55305455 | MsG0380014472.01.T01:CDS |
| TCCCACAGCAACCGTCCGAC+CGG | 0.550912 | 3:+55305923 | None:intergenic |
| TCCAATCCGGGGATGAGCAG+TGG | 0.558973 | 3:-55306025 | MsG0380014472.01.T01:CDS |
| AAATTATTAGTGGAGAGTGA+TGG | 0.562634 | 3:-55305849 | MsG0380014472.01.T01:CDS |
| TGGCCACCTCCGGAATGGAT+CGG | 0.565448 | 3:-55305450 | MsG0380014472.01.T01:CDS |
| ATTACAAGATTGGAATTGAG+AGG | 0.578146 | 3:-55305743 | MsG0380014472.01.T01:CDS |
| TGATGAGAAAGAGAAGAAGT+GGG | 0.580982 | 3:-55305694 | MsG0380014472.01.T01:CDS |
| GAAAGAGAAGAAGTGGGTGA+AGG | 0.587699 | 3:-55305688 | MsG0380014472.01.T01:CDS |
| CAGAACAACTTGGAATAACC+CGG | 0.592149 | 3:+55305471 | None:intergenic |
| ACCGGTCGGACGGTTGCTGT+GGG | 0.603413 | 3:-55305924 | MsG0380014472.01.T01:CDS |
| TATGGCACTTCTCGTAGCAA+CGG | 0.604008 | 3:-55306104 | MsG0380014472.01.T01:CDS |
| AGTTGATAGTACCGGTCGGA+CGG | 0.625753 | 3:-55305934 | MsG0380014472.01.T01:CDS |
| TCCCACACCCAACTCCGAAG+CGG | 0.647805 | 3:+55305608 | None:intergenic |
| TGCAATCCGATCCATTCCGG+AGG | 0.665004 | 3:+55305444 | None:intergenic |
| GTTGCAGAGTCTGTGTTTGG+GGG | 0.668372 | 3:-55305879 | MsG0380014472.01.T01:CDS |
| GCTATGGCAGTTGATAGTAC+CGG | 0.693186 | 3:-55305942 | MsG0380014472.01.T01:CDS |
| TGGCAGTTGATAGTACCGGT+CGG | 0.762849 | 3:-55305938 | MsG0380014472.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTGTATGTTGATGAAA+TGG | - | Chr3:55305781-55305800 | MsG0380014472.01.T01:CDS | 20.0% |
| ! | ATGAAGAAATTAGCTGTTTA+TGG | - | Chr3:55305440-55305459 | MsG0380014472.01.T01:CDS | 25.0% |
| ! | GATAAGTATGTAAATTGTCT+TGG | - | Chr3:55305752-55305771 | MsG0380014472.01.T01:CDS | 25.0% |
| !! | ACTAGATTTAAGTTTGGATT+TGG | - | Chr3:55305661-55305680 | MsG0380014472.01.T01:CDS | 25.0% |
| AAAAGACAAACGTCGTTATA+AGG | + | Chr3:55305590-55305609 | None:intergenic | 30.0% | |
| AAATTATTAGTGGAGAGTGA+TGG | - | Chr3:55305713-55305732 | MsG0380014472.01.T01:CDS | 30.0% | |
| ATATTTAGGGATGATCTTTG+TGG | - | Chr3:55305992-55306011 | MsG0380014472.01.T01:CDS | 30.0% | |
| ATGGGAATTGTGTGATATTT+AGG | - | Chr3:55305978-55305997 | MsG0380014472.01.T01:CDS | 30.0% | |
| ATTACAAGATTGGAATTGAG+AGG | - | Chr3:55305819-55305838 | MsG0380014472.01.T01:CDS | 30.0% | |
| GGGAGATAAGAAATTATTAG+TGG | - | Chr3:55305703-55305722 | MsG0380014472.01.T01:CDS | 30.0% | |
| GGTGAAGAATATTACAAGAT+TGG | - | Chr3:55305809-55305828 | MsG0380014472.01.T01:CDS | 30.0% | |
| TGGGAATTGTGTGATATTTA+GGG | - | Chr3:55305979-55305998 | MsG0380014472.01.T01:CDS | 30.0% | |
| ! | CTGTGAAATTTGAAGTGTTT+AGG | - | Chr3:55305843-55305862 | MsG0380014472.01.T01:CDS | 30.0% |
| ! | TATGTTGATGAAATGGTGAT+TGG | - | Chr3:55305788-55305807 | MsG0380014472.01.T01:CDS | 30.0% |
| !!! | AGATAGGGTTTTGTTTTTAG+GGG | - | Chr3:55305910-55305929 | MsG0380014472.01.T01:CDS | 30.0% |
| !!! | GAGATAGGGTTTTGTTTTTA+GGG | - | Chr3:55305909-55305928 | MsG0380014472.01.T01:CDS | 30.0% |
| AGGTGAAAAATTTGGGAGAT+AGG | - | Chr3:55305894-55305913 | MsG0380014472.01.T01:CDS | 35.0% | |
| GGTGAAAAATTTGGGAGATA+GGG | - | Chr3:55305895-55305914 | MsG0380014472.01.T01:CDS | 35.0% | |
| TGATGAGAAAGAGAAGAAGT+GGG | - | Chr3:55305868-55305887 | MsG0380014472.01.T01:CDS | 35.0% | |
| TGGGTGAAGGTGAAAAATTT+GGG | - | Chr3:55305887-55305906 | MsG0380014472.01.T01:CDS | 35.0% | |
| TTGATGAGAAAGAGAAGAAG+TGG | - | Chr3:55305867-55305886 | MsG0380014472.01.T01:CDS | 35.0% | |
| ! | AACGACGTTTGTCTTTTCAA+AGG | - | Chr3:55305593-55305612 | MsG0380014472.01.T01:CDS | 35.0% |
| ! | ACGTTTGTCTTTTCAAAGGA+CGG | - | Chr3:55305597-55305616 | MsG0380014472.01.T01:CDS | 35.0% |
| ! | TGTGGGACTAGATTTAAGTT+TGG | - | Chr3:55305655-55305674 | MsG0380014472.01.T01:CDS | 35.0% |
| !!! | AAACTTGCCATTTTCCAATC+CGG | - | Chr3:55305524-55305543 | MsG0380014472.01.T01:CDS | 35.0% |
| !!! | GGAGATAGGGTTTTGTTTTT+AGG | - | Chr3:55305908-55305927 | MsG0380014472.01.T01:CDS | 35.0% |
| !!! | TGAGAATGCTGTTTTTTGCT+TGG | - | Chr3:55306036-55306055 | MsG0380014472.01.T01:CDS | 35.0% |
| CAGAACAACTTGGAATAACC+CGG | + | Chr3:55306094-55306113 | None:intergenic | 40.0% | |
| CTTCTCACTGTTGATGTTTC+CGG | - | Chr3:55305500-55305519 | MsG0380014472.01.T01:CDS | 40.0% | |
| GTGGGTGAAGGTGAAAAATT+TGG | - | Chr3:55305886-55305905 | MsG0380014472.01.T01:CDS | 40.0% | |
| TTCTCACTGTTGATGTTTCC+GGG | - | Chr3:55305501-55305520 | MsG0380014472.01.T01:CDS | 40.0% | |
| TTGGAAAATGGCAAGTTTCC+CGG | + | Chr3:55305522-55305541 | None:intergenic | 40.0% | |
| ! | CGTTTGTCTTTTCAAAGGAC+GGG | - | Chr3:55305598-55305617 | MsG0380014472.01.T01:CDS | 40.0% |
| ! | TTCGCGTTTGTCTGATTTTC+CGG | - | Chr3:55306072-55306091 | MsG0380014472.01.T01:CDS | 40.0% |
| ! | TTCTTTTTCTGCTTCCGCTT+CGG | - | Chr3:55305940-55305959 | MsG0380014472.01.T01:CDS | 40.0% |
| !!! | AACTTGCCATTTTCCAATCC+GGG | - | Chr3:55305525-55305544 | MsG0380014472.01.T01:CDS | 40.0% |
| CAATGCAATCCGATCCATTC+CGG | + | Chr3:55306124-55306143 | None:intergenic | 45.0% | |
| CGGGTTATTCCAAGTTGTTC+TGG | - | Chr3:55306092-55306111 | MsG0380014472.01.T01:CDS | 45.0% | |
| GAAAGAGAAGAAGTGGGTGA+AGG | - | Chr3:55305874-55305893 | MsG0380014472.01.T01:CDS | 45.0% | |
| TATGGCACTTCTCGTAGCAA+CGG | - | Chr3:55305458-55305477 | MsG0380014472.01.T01:CDS | 45.0% | |
| TGGTTGCAGAGTCTGTGTTT+GGG | - | Chr3:55305681-55305700 | MsG0380014472.01.T01:CDS | 45.0% | |
| TTGGTTGCAGAGTCTGTGTT+TGG | - | Chr3:55305680-55305699 | MsG0380014472.01.T01:CDS | 45.0% | |
| ! | TCGCGTTTGTCTGATTTTCC+GGG | - | Chr3:55306073-55306092 | MsG0380014472.01.T01:CDS | 45.0% |
| !! | GCTATGGCAGTTGATAGTAC+CGG | - | Chr3:55305620-55305639 | MsG0380014472.01.T01:CDS | 45.0% |
| !!! | ACTTGCCATTTTCCAATCCG+GGG | - | Chr3:55305526-55305545 | MsG0380014472.01.T01:CDS | 45.0% |
| !!! | TCTTTTCAAAGGACGGGCTA+TGG | - | Chr3:55305604-55305623 | MsG0380014472.01.T01:CDS | 45.0% |
| GGTTGCAGAGTCTGTGTTTG+GGG | - | Chr3:55305682-55305701 | MsG0380014472.01.T01:CDS | 50.0% | |
| GTTGCAGAGTCTGTGTTTGG+GGG | - | Chr3:55305683-55305702 | MsG0380014472.01.T01:CDS | 50.0% | |
| TATCTTCCACTGCTCATCCC+CGG | + | Chr3:55305546-55305565 | None:intergenic | 50.0% | |
| ! | CTCATCCCCGGATTGGAAAA+TGG | + | Chr3:55305534-55305553 | None:intergenic | 50.0% |
| !! | AGTTGATAGTACCGGTCGGA+CGG | - | Chr3:55305628-55305647 | MsG0380014472.01.T01:CDS | 50.0% |
| !! | TGGCAGTTGATAGTACCGGT+CGG | - | Chr3:55305624-55305643 | MsG0380014472.01.T01:CDS | 50.0% |
| AATCCGATCCATTCCGGAGG+TGG | + | Chr3:55306118-55306137 | None:intergenic | 55.0% | |
| CAAGTTGTTCTGGCCACCTC+CGG | - | Chr3:55306102-55306121 | MsG0380014472.01.T01:CDS | 55.0% | |
| CGGAGTTGGGTGTGGGAAAT+GGG | - | Chr3:55305960-55305979 | MsG0380014472.01.T01:CDS | 55.0% | |
| TCGGAGTTGGGTGTGGGAAA+TGG | - | Chr3:55305959-55305978 | MsG0380014472.01.T01:CDS | 55.0% | |
| TCTGCTTCCGCTTCGGAGTT+GGG | - | Chr3:55305947-55305966 | MsG0380014472.01.T01:CDS | 55.0% | |
| TGCAATCCGATCCATTCCGG+AGG | + | Chr3:55306121-55306140 | None:intergenic | 55.0% | |
| TTCTGCTTCCGCTTCGGAGT+TGG | - | Chr3:55305946-55305965 | MsG0380014472.01.T01:CDS | 55.0% | |
| CGGAGGTGGCCAGAACAACT+TGG | + | Chr3:55306104-55306123 | None:intergenic | 60.0% | |
| TCCAATCCGGGGATGAGCAG+TGG | - | Chr3:55305537-55305556 | MsG0380014472.01.T01:CDS | 60.0% | |
| TCCACTGCTCATCCCCGGAT+TGG | + | Chr3:55305541-55305560 | None:intergenic | 60.0% | |
| TCCCACACCCAACTCCGAAG+CGG | + | Chr3:55305957-55305976 | None:intergenic | 60.0% | |
| TCCGCTTCGGAGTTGGGTGT+GGG | - | Chr3:55305953-55305972 | MsG0380014472.01.T01:CDS | 60.0% | |
| TGGCCACCTCCGGAATGGAT+CGG | - | Chr3:55306112-55306131 | MsG0380014472.01.T01:CDS | 60.0% | |
| TGTTCTGGCCACCTCCGGAA+TGG | - | Chr3:55306107-55306126 | MsG0380014472.01.T01:CDS | 60.0% | |
| TTCCGCTTCGGAGTTGGGTG+TGG | - | Chr3:55305952-55305971 | MsG0380014472.01.T01:CDS | 60.0% | |
| ACCGGTCGGACGGTTGCTGT+GGG | - | Chr3:55305638-55305657 | MsG0380014472.01.T01:CDS | 65.0% | |
| TACCGGTCGGACGGTTGCTG+TGG | - | Chr3:55305637-55305656 | MsG0380014472.01.T01:CDS | 65.0% | |
| TCCCACAGCAACCGTCCGAC+CGG | + | Chr3:55305642-55305661 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 55305440 | 55306144 | 55305440 | ID=MsG0380014472.01;Name=MsG0380014472.01 |
| Chr3 | mRNA | 55305440 | 55306144 | 55305440 | ID=MsG0380014472.01.T01;Parent=MsG0380014472.01;Name=MsG0380014472.01.T01;_AED=0.32;_eAED=0.32;_QI=0|-1|0|1|-1|1|1|0|234 |
| Chr3 | exon | 55305440 | 55306144 | 55305440 | ID=MsG0380014472.01.T01:exon:9699;Parent=MsG0380014472.01.T01 |
| Chr3 | CDS | 55305440 | 55306144 | 55305440 | ID=MsG0380014472.01.T01:cds;Parent=MsG0380014472.01.T01 |
| Gene Sequence |
| Protein sequence |
