Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029204.01.T01 | RHN57146.1 | 83.137 | 255 | 25 | 2 | 74 | 310 | 1 | 255 | 3.03E-144 | 418 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029204.01.T01 | A0A396HUX2 | 83.137 | 255 | 25 | 2 | 74 | 310 | 1 | 255 | 1.44e-144 | 418 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180001410.01 | MsG0580029204.01 | 0.844849 | 5.860408e-59 | 9.584409e-56 |
| MsG0180002089.01 | MsG0580029204.01 | 0.824237 | 8.997396e-54 | 7.923834e-51 |
| MsG0180002195.01 | MsG0580029204.01 | 0.820896 | 5.381765e-53 | 4.313088e-50 |
| MsG0180002518.01 | MsG0580029204.01 | 0.800095 | 1.692855e-48 | 7.813947e-46 |
| MsG0180002667.01 | MsG0580029204.01 | 0.821451 | 4.010550e-53 | 3.263884e-50 |
| MsG0180005974.01 | MsG0580029204.01 | 0.802635 | 5.109736e-49 | 2.515569e-46 |
| MsG0380011759.01 | MsG0580029204.01 | 0.827251 | 1.734333e-54 | 1.665310e-51 |
| MsG0380011870.01 | MsG0580029204.01 | 0.801448 | 8.960202e-49 | 4.280203e-46 |
| MsG0380014472.01 | MsG0580029204.01 | 0.804119 | 2.517698e-49 | 1.287541e-46 |
| MsG0380014867.01 | MsG0580029204.01 | 0.807092 | 5.985467e-50 | 3.303858e-47 |
| MsG0580024621.01 | MsG0580029204.01 | 0.836493 | 9.062224e-57 | 1.143853e-53 |
| MsG0380016475.01 | MsG0580029204.01 | 0.842311 | 2.794985e-58 | 4.221055e-55 |
| MsG0380017822.01 | MsG0580029204.01 | 0.815431 | 9.278628e-52 | 6.395945e-49 |
| MsG0380017848.01 | MsG0580029204.01 | 0.809256 | 2.070261e-50 | 1.209628e-47 |
| MsG0580026197.01 | MsG0580029204.01 | 0.840759 | 7.165707e-58 | 1.030935e-54 |
| MsG0580026222.01 | MsG0580029204.01 | 0.821824 | 3.287524e-53 | 2.703982e-50 |
| MsG0580027687.01 | MsG0580029204.01 | 0.824462 | 7.968852e-54 | 7.062784e-51 |
| MsG0580027688.01 | MsG0580029204.01 | 0.853498 | 2.297357e-61 | 4.973905e-58 |
| MsG0580029204.01 | MsG0680032801.01 | 0.823144 | 1.622097e-53 | 1.385234e-50 |
| MsG0580029204.01 | MsG0680032844.01 | 0.829005 | 6.557957e-55 | 6.626288e-52 |
| MsG0580029204.01 | MsG0680033038.01 | 0.803509 | 3.369684e-49 | 1.696502e-46 |
| MsG0580029204.01 | MsG0680033379.01 | 0.824387 | 8.297259e-54 | 7.338304e-51 |
| MsG0580029204.01 | MsG0780036498.01 | 0.819184 | 1.327247e-52 | 1.014136e-49 |
| MsG0580029204.01 | MsG0780039282.01 | 0.833212 | 6.071730e-56 | 6.945542e-53 |
| MsG0580029204.01 | MsG0880041916.01 | 0.812531 | 4.046331e-51 | 2.579096e-48 |
| MsG0580029204.01 | MsG0880042454.01 | 0.839334 | 1.686506e-57 | 2.321651e-54 |
| MsG0580029204.01 | MsG0880042886.01 | 0.804171 | 2.454974e-49 | 1.257139e-46 |
| MsG0580029204.01 | MsG0880043717.01 | 0.803280 | 3.758350e-49 | 1.880955e-46 |
| MsG0580029204.01 | MsG0880044554.01 | 0.812532 | 4.044045e-51 | 2.577731e-48 |
| MsG0280006456.01 | MsG0580029204.01 | 0.827062 | 1.924705e-54 | 1.837836e-51 |
| MsG0280009371.01 | MsG0580029204.01 | 0.801047 | 1.082559e-48 | 5.119499e-46 |
| MsG0280009646.01 | MsG0580029204.01 | 0.812233 | 4.699673e-51 | 2.971789e-48 |
PPI
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029204.01.T01 | MTR_5g082780 | 82.609 | 230 | 22 | 2 | 98 | 309 | 1 | 230 | 2.50e-130 | 372 |
| MsG0580029204.01.T01 | MTR_5g082770 | 61.644 | 292 | 84 | 4 | 1 | 266 | 1 | 290 | 7.73e-115 | 335 |
| MsG0580029204.01.T01 | MTR_5g038230 | 47.339 | 357 | 168 | 9 | 1 | 341 | 1 | 353 | 1.55e-99 | 298 |
| MsG0580029204.01.T01 | MTR_5g038260 | 44.241 | 382 | 169 | 10 | 1 | 341 | 3 | 381 | 8.15e-96 | 290 |
| MsG0580029204.01.T01 | MTR_1g064570 | 42.000 | 400 | 171 | 9 | 1 | 341 | 1 | 398 | 9.55e-93 | 282 |
| MsG0580029204.01.T01 | MTR_1g108740 | 42.049 | 371 | 151 | 11 | 4 | 341 | 5 | 344 | 1.15e-78 | 244 |
| MsG0580029204.01.T01 | MTR_7g077660 | 40.103 | 389 | 157 | 15 | 3 | 341 | 4 | 366 | 3.20e-71 | 226 |
| MsG0580029204.01.T01 | MTR_7g077650 | 38.987 | 395 | 157 | 15 | 2 | 340 | 3 | 369 | 7.93e-70 | 223 |
| MsG0580029204.01.T01 | MTR_7g077620 | 39.541 | 392 | 161 | 13 | 2 | 341 | 3 | 370 | 6.31e-68 | 218 |
| MsG0580029204.01.T01 | MTR_1g016150 | 40.404 | 297 | 90 | 8 | 4 | 278 | 5 | 236 | 3.60e-57 | 186 |
| MsG0580029204.01.T01 | MTR_7g076100 | 33.718 | 347 | 169 | 13 | 3 | 341 | 5 | 298 | 1.21e-38 | 139 |
| MsG0580029204.01.T01 | MTR_7g076110 | 33.548 | 310 | 145 | 11 | 73 | 341 | 22 | 311 | 1.53e-34 | 129 |
| MsG0580029204.01.T01 | MTR_1g108750 | 44.371 | 151 | 56 | 3 | 1 | 150 | 1 | 124 | 6.91e-26 | 100 |
| MsG0580029204.01.T01 | MTR_3g114990 | 24.505 | 404 | 225 | 19 | 1 | 339 | 20 | 408 | 2.69e-13 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 60 sgRNAs with CRISPR-Local
Find 74 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTAATATCATTGGAAATT+TGG | 0.116569 | 5:+93668833 | None:intergenic |
| TAGCATTTGTTTAAACTTTC+CGG | 0.163534 | 5:+93669114 | None:intergenic |
| GGAACTAGATTGGGCAAATT+TGG | 0.170985 | 5:-93669895 | MsG0580029204.01.T01:CDS |
| TAAGAATTTGGCAATTTAAA+TGG | 0.183830 | 5:+93669672 | None:intergenic |
| TAATCATTTGGTCTTGTTAT+AGG | 0.187600 | 5:+93669477 | None:intergenic |
| TACAAACATCTTTCTGTTCT+TGG | 0.199967 | 5:+93669720 | None:intergenic |
| AGCAGCAGCCACCACCTTTC+TGG | 0.214961 | 5:-93668862 | MsG0580029204.01.T01:CDS |
| TTTATGGATGTTATGTTCTA+TGG | 0.218295 | 5:-93669357 | MsG0580029204.01.T01:CDS |
| GAGCTCGCTTCATTCCTTTA+TGG | 0.232283 | 5:-93669373 | MsG0580029204.01.T01:CDS |
| GGCTAAATCCACAGCAAATA+TGG | 0.248424 | 5:+93669646 | None:intergenic |
| CAAATATGGTAATAAGAATT+TGG | 0.264290 | 5:+93669660 | None:intergenic |
| AATCATTTGGTCTTGTTATA+GGG | 0.294407 | 5:+93669478 | None:intergenic |
| AACAAGACCAAATGATTATA+TGG | 0.314220 | 5:-93669472 | MsG0580029204.01.T01:CDS |
| ACTTATGGTCCATTTCATAT+AGG | 0.327197 | 5:-93668947 | MsG0580029204.01.T01:CDS |
| CTTATGGTCCATTTCATATA+GGG | 0.341132 | 5:-93668946 | MsG0580029204.01.T01:CDS |
| TCGAAGGTTGGAAGACTAAT+AGG | 0.348536 | 5:+93669555 | None:intergenic |
| AAGTTAGATTGTGTAACTTA+TGG | 0.369088 | 5:-93668962 | MsG0580029204.01.T01:CDS |
| AGAAGGATGCAATATTGTTA+TGG | 0.378560 | 5:+93669590 | None:intergenic |
| ACAAACATCTTTCTGTTCTT+GGG | 0.381418 | 5:+93669721 | None:intergenic |
| GTATCAGCTTCATACTTCTC+TGG | 0.384518 | 5:-93669034 | MsG0580029204.01.T01:CDS |
| GCCACAACCATATAATCATT+TGG | 0.389176 | 5:+93669465 | None:intergenic |
| GCAGCAGCCACCACCTTTCT+GGG | 0.398247 | 5:-93668861 | MsG0580029204.01.T01:CDS |
| TGGTTAGAATGGAACTAGAT+TGG | 0.415806 | 5:-93669905 | None:intergenic |
| TTATTTAATTCTTGATAAGT+TGG | 0.416195 | 5:-93669859 | MsG0580029204.01.T01:CDS |
| GGTTAGAATGGAACTAGATT+GGG | 0.421888 | 5:-93669904 | None:intergenic |
| TTATATATCCCTATATGAAA+TGG | 0.424795 | 5:+93668938 | None:intergenic |
| CGAATTCAAACTTGTACACT+TGG | 0.434747 | 5:+93669146 | None:intergenic |
| TTATCTTGTGAAATCATTAG+AGG | 0.436221 | 5:-93669215 | MsG0580029204.01.T01:CDS |
| ATAGGAGCAACATTCTTAGA+AGG | 0.444870 | 5:+93669573 | None:intergenic |
| ATAGAACATAACATCCATAA+AGG | 0.458967 | 5:+93669359 | None:intergenic |
| TGTTCTTGGGATCATTAGCA+TGG | 0.462460 | 5:+93669734 | None:intergenic |
| TTGGTGCCGTGTGCAAGAAT+TGG | 0.464467 | 5:-93669812 | MsG0580029204.01.T01:CDS |
| ATGCTAAAGCTTGAGAGTCT+TGG | 0.465110 | 5:-93669097 | MsG0580029204.01.T01:CDS |
| TAAAAGCGGGCGAACCATGC+TGG | 0.470666 | 5:-93669407 | MsG0580029204.01.T01:CDS |
| ACCAAATGATTATATGGTTG+TGG | 0.479866 | 5:-93669466 | MsG0580029204.01.T01:CDS |
| AACCATGCTGGACTTATGTA+TGG | 0.481402 | 5:-93669395 | MsG0580029204.01.T01:CDS |
| TTTATCTGAGGTCGGGTACA+AGG | 0.517119 | 5:-93669517 | MsG0580029204.01.T01:CDS |
| TCTTATTACCATATTTGCTG+TGG | 0.524145 | 5:-93669654 | MsG0580029204.01.T01:CDS |
| TTTGAATTCGATGCTCATAC+CGG | 0.528075 | 5:-93669133 | MsG0580029204.01.T01:CDS |
| GTGAAGATTATGATGATCAA+TGG | 0.528142 | 5:+93668901 | None:intergenic |
| ATACAAGTTTATCTGAGGTC+GGG | 0.533775 | 5:-93669524 | MsG0580029204.01.T01:CDS |
| GGGATATATAATGTAAGAGA+TGG | 0.535003 | 5:-93668926 | MsG0580029204.01.T01:CDS |
| TATACAAGTTTATCTGAGGT+CGG | 0.543905 | 5:-93669525 | MsG0580029204.01.T01:CDS |
| ATGGATGTTATGTTCTATGG+AGG | 0.548376 | 5:-93669354 | MsG0580029204.01.T01:CDS |
| AAATTTGGTAAAACCCAGAA+AGG | 0.548520 | 5:+93668848 | None:intergenic |
| GTTCTTGGGATCATTAGCAT+GGG | 0.554796 | 5:+93669735 | None:intergenic |
| ATTTGCTGTGGATTTAGCCA+TGG | 0.559735 | 5:-93669642 | MsG0580029204.01.T01:CDS |
| TATCTTGTGAAATCATTAGA+GGG | 0.568311 | 5:-93669214 | MsG0580029204.01.T01:CDS |
| GGTAAAACCCAGAAAGGTGG+TGG | 0.590899 | 5:+93668854 | None:intergenic |
| GTATATGATCGATCGAAGGT+TGG | 0.610922 | 5:+93669543 | None:intergenic |
| ATCATATACAAGTTTATCTG+AGG | 0.615631 | 5:-93669529 | MsG0580029204.01.T01:CDS |
| CTCCATACATAAGTCCAGCA+TGG | 0.636983 | 5:+93669393 | None:intergenic |
| AATCATTAGAGGGAGACTTG+TGG | 0.640892 | 5:-93669204 | MsG0580029204.01.T01:CDS |
| TTTGGTAAAACCCAGAAAGG+TGG | 0.643098 | 5:+93668851 | None:intergenic |
| TAATCGCCAATTCTTGCACA+CGG | 0.645036 | 5:+93669806 | None:intergenic |
| AGCTTAACCATCAAAATCAG+CGG | 0.648160 | 5:-93669776 | MsG0580029204.01.T01:CDS |
| TATGTTGCGAGTAAATATCA+CGG | 0.663367 | 5:-93669324 | MsG0580029204.01.T01:intron |
| ACTTGTATATGATCGATCGA+AGG | 0.668705 | 5:+93669539 | None:intergenic |
| ATTAGAGGGAGACTTGTGGA+TGG | 0.690554 | 5:-93669200 | MsG0580029204.01.T01:CDS |
| CTATTGTTGCAAGACAACCA+TGG | 0.694642 | 5:+93669625 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTTAATTCTTGATAAGT+TGG | - | Chr5:93668879-93668898 | MsG0580029204.01.T01:CDS | 15.0% |
| !!! | GGTATAATATCTTTTAATAT+TGG | - | Chr5:93669435-93669454 | MsG0580029204.01.T01:CDS | 15.0% |
| !!! | TGAAAAGATTTTTTACTTTT+AGG | - | Chr5:93669561-93669580 | MsG0580029204.01.T01:CDS | 15.0% |
| !! | CAAATATGGTAATAAGAATT+TGG | + | Chr5:93669081-93669100 | None:intergenic | 20.0% |
| !! | TAAGAATTTGGCAATTTAAA+TGG | + | Chr5:93669069-93669088 | None:intergenic | 20.0% |
| !! | TTATATATCCCTATATGAAA+TGG | + | Chr5:93669803-93669822 | None:intergenic | 20.0% |
| !!! | CTTTTAATATTGGTCATAAA+AGG | - | Chr5:93669445-93669464 | MsG0580029204.01.T01:CDS | 20.0% |
| !!! | TTTAAATGGATACATTTTCT+TGG | + | Chr5:93669055-93669074 | None:intergenic | 20.0% |
| ! | AACAAGACCAAATGATTATA+TGG | - | Chr5:93669266-93669285 | MsG0580029204.01.T01:intron | 25.0% |
| ! | AAGTTAGATTGTGTAACTTA+TGG | - | Chr5:93669776-93669795 | MsG0580029204.01.T01:CDS | 25.0% |
| ! | ATAGAACATAACATCCATAA+AGG | + | Chr5:93669382-93669401 | None:intergenic | 25.0% |
| ! | ATCATATACAAGTTTATCTG+AGG | - | Chr5:93669209-93669228 | MsG0580029204.01.T01:CDS | 25.0% |
| ! | TAGCATTTGTTTAAACTTTC+CGG | + | Chr5:93669627-93669646 | None:intergenic | 25.0% |
| ! | TATCTTGTGAAATCATTAGA+GGG | - | Chr5:93669524-93669543 | MsG0580029204.01.T01:CDS | 25.0% |
| ! | TTATCTTGTGAAATCATTAG+AGG | - | Chr5:93669523-93669542 | MsG0580029204.01.T01:CDS | 25.0% |
| ! | TTTATGGATGTTATGTTCTA+TGG | - | Chr5:93669381-93669400 | MsG0580029204.01.T01:CDS | 25.0% |
| !!! | AATCATTTGGTCTTGTTATA+GGG | + | Chr5:93669263-93669282 | None:intergenic | 25.0% |
| !!! | CAAATAGATCACGTTTTTTT+TGG | - | Chr5:93668907-93668926 | MsG0580029204.01.T01:CDS | 25.0% |
| !!! | TAATCATTTGGTCTTGTTAT+AGG | + | Chr5:93669264-93669283 | None:intergenic | 25.0% |
| AAATTTGGTAAAACCCAGAA+AGG | + | Chr5:93669893-93669912 | None:intergenic | 30.0% | |
| ACAAACATCTTTCTGTTCTT+GGG | + | Chr5:93669020-93669039 | None:intergenic | 30.0% | |
| ACCAAATGATTATATGGTTG+TGG | - | Chr5:93669272-93669291 | MsG0580029204.01.T01:intron | 30.0% | |
| ACTTATGGTCCATTTCATAT+AGG | - | Chr5:93669791-93669810 | MsG0580029204.01.T01:CDS | 30.0% | |
| AGAAGGATGCAATATTGTTA+TGG | + | Chr5:93669151-93669170 | None:intergenic | 30.0% | |
| CTTATGGTCCATTTCATATA+GGG | - | Chr5:93669792-93669811 | MsG0580029204.01.T01:CDS | 30.0% | |
| GGGATATATAATGTAAGAGA+TGG | - | Chr5:93669812-93669831 | MsG0580029204.01.T01:CDS | 30.0% | |
| GTGAAGATTATGATGATCAA+TGG | + | Chr5:93669840-93669859 | None:intergenic | 30.0% | |
| TACAAACATCTTTCTGTTCT+TGG | + | Chr5:93669021-93669040 | None:intergenic | 30.0% | |
| TATGTTGCGAGTAAATATCA+CGG | - | Chr5:93669414-93669433 | MsG0580029204.01.T01:CDS | 30.0% | |
| ! | TATACAAGTTTATCTGAGGT+CGG | - | Chr5:93669213-93669232 | MsG0580029204.01.T01:CDS | 30.0% |
| ! | TCTTATTACCATATTTGCTG+TGG | - | Chr5:93669084-93669103 | MsG0580029204.01.T01:CDS | 30.0% |
| !! | ACGTTTCGCTTTTATAAAAG+CGG | - | Chr5:93669317-93669336 | MsG0580029204.01.T01:intron | 30.0% |
| !! | GGAGACAATGTTTTATTCTT+GGG | - | Chr5:93669662-93669681 | MsG0580029204.01.T01:CDS | 30.0% |
| !! | TGGAGACAATGTTTTATTCT+TGG | - | Chr5:93669661-93669680 | MsG0580029204.01.T01:CDS | 30.0% |
| ACTTGTATATGATCGATCGA+AGG | + | Chr5:93669202-93669221 | None:intergenic | 35.0% | |
| AGCTTAACCATCAAAATCAG+CGG | - | Chr5:93668962-93668981 | MsG0580029204.01.T01:CDS | 35.0% | |
| ATAGGAGCAACATTCTTAGA+AGG | + | Chr5:93669168-93669187 | None:intergenic | 35.0% | |
| ATGGATGTTATGTTCTATGG+AGG | - | Chr5:93669384-93669403 | MsG0580029204.01.T01:CDS | 35.0% | |
| CGAATTCAAACTTGTACACT+TGG | + | Chr5:93669595-93669614 | None:intergenic | 35.0% | |
| GATAACTCCAAATCCAATTC+AGG | - | Chr5:93669467-93669486 | MsG0580029204.01.T01:CDS | 35.0% | |
| GCCACAACCATATAATCATT+TGG | + | Chr5:93669276-93669295 | None:intergenic | 35.0% | |
| TTTGAATTCGATGCTCATAC+CGG | - | Chr5:93669605-93669624 | MsG0580029204.01.T01:CDS | 35.0% | |
| ! | ATACAAGTTTATCTGAGGTC+GGG | - | Chr5:93669214-93669233 | MsG0580029204.01.T01:CDS | 35.0% |
| ! | GCTTTTCATGGAAGGTTTAA+AGG | - | Chr5:93669500-93669519 | MsG0580029204.01.T01:CDS | 35.0% |
| !! | CGTTTCGCTTTTATAAAAGC+GGG | - | Chr5:93669318-93669337 | MsG0580029204.01.T01:intron | 35.0% |
| AACCATGCTGGACTTATGTA+TGG | - | Chr5:93669343-93669362 | MsG0580029204.01.T01:CDS | 40.0% | |
| AATCATTAGAGGGAGACTTG+TGG | - | Chr5:93669534-93669553 | MsG0580029204.01.T01:CDS | 40.0% | |
| ATGCTAAAGCTTGAGAGTCT+TGG | - | Chr5:93669641-93669660 | MsG0580029204.01.T01:CDS | 40.0% | |
| CTATTGTTGCAAGACAACCA+TGG | + | Chr5:93669116-93669135 | None:intergenic | 40.0% | |
| GGAACTAGATTGGGCAAATT+TGG | - | Chr5:93668843-93668862 | MsG0580029204.01.T01:CDS | 40.0% | |
| GGCTAAATCCACAGCAAATA+TGG | + | Chr5:93669095-93669114 | None:intergenic | 40.0% | |
| GTATATGATCGATCGAAGGT+TGG | + | Chr5:93669198-93669217 | None:intergenic | 40.0% | |
| GTATCAGCTTCATACTTCTC+TGG | - | Chr5:93669704-93669723 | MsG0580029204.01.T01:CDS | 40.0% | |
| GTTCTTGGGATCATTAGCAT+GGG | + | Chr5:93669006-93669025 | None:intergenic | 40.0% | |
| TAATCGCCAATTCTTGCACA+CGG | + | Chr5:93668935-93668954 | None:intergenic | 40.0% | |
| TCCAAATCCAATTCAGGACA+TGG | - | Chr5:93669473-93669492 | MsG0580029204.01.T01:CDS | 40.0% | |
| TCGAAGGTTGGAAGACTAAT+AGG | + | Chr5:93669186-93669205 | None:intergenic | 40.0% | |
| TGTTCTTGGGATCATTAGCA+TGG | + | Chr5:93669007-93669026 | None:intergenic | 40.0% | |
| TTTGGTAAAACCCAGAAAGG+TGG | + | Chr5:93669890-93669909 | None:intergenic | 40.0% | |
| ! | ATGGCATAGCTTTTCATGGA+AGG | - | Chr5:93669492-93669511 | MsG0580029204.01.T01:CDS | 40.0% |
| !! | ATTTGCTGTGGATTTAGCCA+TGG | - | Chr5:93669096-93669115 | MsG0580029204.01.T01:CDS | 40.0% |
| !!! | TTCTGAACCGCTGATTTTGA+TGG | + | Chr5:93668972-93668991 | None:intergenic | 40.0% |
| AGCTATGCCATGTCCTGAAT+TGG | + | Chr5:93669483-93669502 | None:intergenic | 45.0% | |
| ATTAGAGGGAGACTTGTGGA+TGG | - | Chr5:93669538-93669557 | MsG0580029204.01.T01:CDS | 45.0% | |
| CTCCATACATAAGTCCAGCA+TGG | + | Chr5:93669348-93669367 | None:intergenic | 45.0% | |
| GAGCTCGCTTCATTCCTTTA+TGG | - | Chr5:93669365-93669384 | MsG0580029204.01.T01:CDS | 45.0% | |
| GCCATGTCCTGAATTGGATT+TGG | + | Chr5:93669477-93669496 | None:intergenic | 45.0% | |
| ! | GGACATGGCATAGCTTTTCA+TGG | - | Chr5:93669488-93669507 | MsG0580029204.01.T01:CDS | 45.0% |
| ! | TTTATCTGAGGTCGGGTACA+AGG | - | Chr5:93669221-93669240 | MsG0580029204.01.T01:CDS | 45.0% |
| GGTAAAACCCAGAAAGGTGG+TGG | + | Chr5:93669887-93669906 | None:intergenic | 50.0% | |
| !! | TTGGTGCCGTGTGCAAGAAT+TGG | - | Chr5:93668926-93668945 | MsG0580029204.01.T01:CDS | 50.0% |
| TAAAAGCGGGCGAACCATGC+TGG | - | Chr5:93669331-93669350 | MsG0580029204.01.T01:CDS | 55.0% | |
| AGCAGCAGCCACCACCTTTC+TGG | - | Chr5:93669876-93669895 | MsG0580029204.01.T01:CDS | 60.0% | |
| GCAGCAGCCACCACCTTTCT+GGG | - | Chr5:93669877-93669896 | MsG0580029204.01.T01:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 93668841 | 93669919 | 93668841 | ID=MsG0580029204.01;Name=MsG0580029204.01 |
| Chr5 | mRNA | 93668841 | 93669919 | 93668841 | ID=MsG0580029204.01.T01;Parent=MsG0580029204.01;Name=MsG0580029204.01.T01;_AED=0.44;_eAED=0.44;_QI=0|0|0|1|1|0.5|2|0|341 |
| Chr5 | exon | 93669325 | 93669919 | 93669325 | ID=MsG0580029204.01.T01:exon:49692;Parent=MsG0580029204.01.T01 |
| Chr5 | exon | 93668841 | 93669271 | 93668841 | ID=MsG0580029204.01.T01:exon:49691;Parent=MsG0580029204.01.T01 |
| Chr5 | CDS | 93669325 | 93669919 | 93669325 | ID=MsG0580029204.01.T01:cds;Parent=MsG0580029204.01.T01 |
| Chr5 | CDS | 93668841 | 93669271 | 93668841 | ID=MsG0580029204.01.T01:cds;Parent=MsG0580029204.01.T01 |
| Gene Sequence |
| Protein sequence |
