Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380015429.01.T01 | XP_003600834.1 | 97.414 | 348 | 7 | 1 | 1 | 348 | 1 | 346 | 0 | 684 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380015429.01.T01 | Q9FHG4 | 28.929 | 280 | 155 | 11 | 61 | 312 | 68 | 331 | 2.91E-18 | 89.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380015429.01.T01 | G7JAM1 | 97.414 | 348 | 7 | 1 | 1 | 348 | 1 | 346 | 0.0 | 684 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180003749.01 | MsG0380015429.01 | 0.804263 | 2.349607e-49 | 1.205976e-46 |
| MsG0380015429.01 | MsG0380016141.01 | 0.819684 | 1.020823e-52 | 7.909330e-50 |
| MsG0380015429.01 | MsG0380016567.01 | 0.860751 | 1.660586e-63 | 4.588421e-60 |
| MsG0380015429.01 | MsG0380016865.01 | 0.824646 | 7.210612e-54 | 6.425993e-51 |
| MsG0380015429.01 | MsG0380016872.01 | 0.805600 | 1.234239e-49 | 6.556862e-47 |
| MsG0380015429.01 | MsG0380017858.01 | 0.804332 | 2.272837e-49 | 1.168665e-46 |
| MsG0380015429.01 | MsG0480023064.01 | 0.819299 | 1.249010e-52 | 9.573662e-50 |
| MsG0380015429.01 | MsG0480023944.01 | 0.815176 | 1.057159e-51 | 7.235854e-49 |
| MsG0380015429.01 | MsG0580025071.01 | 0.815974 | 7.020048e-52 | 4.911592e-49 |
| MsG0380015429.01 | MsG0780040136.01 | 0.810092 | 1.369069e-50 | 8.177647e-48 |
| MsG0380015429.01 | MsG0780041439.01 | 0.821118 | 4.786184e-53 | 3.859369e-50 |
| MsG0380015429.01 | MsG0880045949.01 | 0.815959 | 7.074788e-52 | 4.947818e-49 |
| MsG0380015429.01 | MsG0880045963.01 | 0.846767 | 1.766168e-59 | 3.072625e-56 |
| MsG0280007419.01 | MsG0380015429.01 | 0.802744 | 4.851688e-49 | 2.395230e-46 |
| MsG0280007667.01 | MsG0380015429.01 | 0.817435 | 3.302988e-52 | 2.405258e-49 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380015429.01.T01 | MTR_3g069910 | 97.414 | 348 | 7 | 1 | 1 | 348 | 1 | 346 | 0.0 | 684 |
| MsG0380015429.01.T01 | MTR_7g066210 | 30.303 | 363 | 220 | 10 | 1 | 346 | 6 | 352 | 6.48e-42 | 149 |
| MsG0380015429.01.T01 | MTR_4g019080 | 29.640 | 361 | 198 | 14 | 6 | 338 | 9 | 341 | 1.34e-32 | 124 |
| MsG0380015429.01.T01 | MTR_5g068770 | 31.206 | 282 | 145 | 11 | 1 | 242 | 1 | 273 | 3.21e-24 | 104 |
| MsG0380015429.01.T01 | MTR_1g099260 | 28.221 | 326 | 187 | 14 | 1 | 303 | 1 | 302 | 1.08e-19 | 90.9 |
| MsG0380015429.01.T01 | MTR_5g077100 | 27.698 | 278 | 158 | 9 | 62 | 307 | 67 | 333 | 1.46e-17 | 84.3 |
| MsG0380015429.01.T01 | MTR_7g062940 | 30.645 | 186 | 106 | 8 | 78 | 245 | 78 | 258 | 1.47e-13 | 72.0 |
| MsG0380015429.01.T01 | MTR_3g007870 | 26.087 | 253 | 154 | 10 | 8 | 242 | 6 | 243 | 7.21e-13 | 70.1 |
| MsG0380015429.01.T01 | MTR_7g063030 | 30.047 | 213 | 128 | 7 | 52 | 245 | 53 | 263 | 1.05e-12 | 69.7 |
| MsG0380015429.01.T01 | MTR_7g063030 | 30.047 | 213 | 128 | 7 | 52 | 245 | 47 | 257 | 1.47e-12 | 68.9 |
| MsG0380015429.01.T01 | MTR_5g095970 | 26.368 | 201 | 128 | 7 | 52 | 242 | 53 | 243 | 1.69e-12 | 68.9 |
| MsG0380015429.01.T01 | MTR_2g013720 | 28.516 | 256 | 153 | 10 | 41 | 270 | 41 | 292 | 5.17e-12 | 67.4 |
| MsG0380015429.01.T01 | MTR_7g063010 | 25.547 | 274 | 163 | 9 | 52 | 304 | 50 | 303 | 3.02e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380015429.01.T01 | AT5G01090 | 29.620 | 368 | 204 | 12 | 1 | 339 | 1 | 342 | 3.40e-31 | 121 |
| MsG0380015429.01.T01 | AT3G09190 | 25.610 | 328 | 209 | 11 | 12 | 326 | 27 | 332 | 7.45e-23 | 98.2 |
| MsG0380015429.01.T01 | AT5G55830 | 28.929 | 280 | 155 | 11 | 61 | 312 | 68 | 331 | 2.96e-19 | 89.4 |
| MsG0380015429.01.T01 | AT3G55550 | 29.200 | 250 | 152 | 9 | 31 | 263 | 36 | 277 | 2.38e-18 | 86.7 |
| MsG0380015429.01.T01 | AT5G03140 | 32.821 | 195 | 113 | 7 | 52 | 233 | 60 | 249 | 1.32e-16 | 81.6 |
| MsG0380015429.01.T01 | AT3G09035 | 25.641 | 312 | 203 | 10 | 25 | 324 | 36 | 330 | 1.45e-16 | 80.1 |
| MsG0380015429.01.T01 | AT5G42120 | 31.061 | 264 | 141 | 11 | 7 | 243 | 6 | 255 | 2.56e-16 | 80.5 |
| MsG0380015429.01.T01 | AT5G03350 | 28.195 | 266 | 153 | 11 | 9 | 242 | 6 | 265 | 8.65e-16 | 77.0 |
| MsG0380015429.01.T01 | AT4G02410 | 28.782 | 271 | 169 | 9 | 52 | 302 | 55 | 321 | 1.85e-15 | 78.2 |
| MsG0380015429.01.T01 | AT1G70110 | 30.806 | 211 | 116 | 9 | 26 | 212 | 22 | 226 | 8.18e-15 | 75.9 |
| MsG0380015429.01.T01 | AT2G29220 | 29.577 | 213 | 122 | 9 | 36 | 228 | 42 | 246 | 3.64e-14 | 73.9 |
| MsG0380015429.01.T01 | AT5G60300 | 27.941 | 272 | 158 | 12 | 52 | 303 | 52 | 305 | 6.98e-14 | 73.2 |
| MsG0380015429.01.T01 | AT5G60300 | 27.941 | 272 | 158 | 12 | 52 | 303 | 52 | 305 | 6.98e-14 | 73.2 |
| MsG0380015429.01.T01 | AT5G60300 | 27.941 | 272 | 158 | 12 | 52 | 303 | 52 | 305 | 7.25e-14 | 73.2 |
| MsG0380015429.01.T01 | AT3G45410 | 28.328 | 293 | 170 | 15 | 6 | 271 | 5 | 284 | 8.43e-14 | 72.8 |
| MsG0380015429.01.T01 | AT3G16530 | 26.894 | 264 | 153 | 11 | 14 | 242 | 9 | 267 | 1.67e-13 | 70.5 |
| MsG0380015429.01.T01 | AT3G53810 | 29.075 | 227 | 115 | 7 | 32 | 229 | 38 | 247 | 1.91e-13 | 72.0 |
| MsG0380015429.01.T01 | AT2G29250 | 26.316 | 247 | 154 | 9 | 2 | 228 | 8 | 246 | 2.35e-13 | 71.6 |
| MsG0380015429.01.T01 | AT3G53380 | 29.084 | 251 | 159 | 8 | 4 | 242 | 1 | 244 | 2.64e-13 | 71.6 |
| MsG0380015429.01.T01 | AT2G37710 | 29.237 | 236 | 135 | 9 | 19 | 231 | 23 | 249 | 3.28e-13 | 71.2 |
| MsG0380015429.01.T01 | AT3G15356 | 26.087 | 207 | 124 | 6 | 29 | 206 | 27 | 233 | 3.60e-13 | 69.3 |
| MsG0380015429.01.T01 | AT1G53070 | 26.592 | 267 | 161 | 10 | 8 | 242 | 5 | 268 | 4.93e-13 | 68.9 |
| MsG0380015429.01.T01 | AT5G60310 | 26.904 | 197 | 121 | 7 | 71 | 250 | 73 | 263 | 3.68e-12 | 67.8 |
| MsG0380015429.01.T01 | AT1G53060 | 30.000 | 170 | 95 | 7 | 79 | 228 | 56 | 221 | 9.70e-12 | 64.7 |
| MsG0380015429.01.T01 | AT4G02420 | 28.369 | 282 | 169 | 11 | 4 | 262 | 7 | 278 | 1.99e-11 | 65.5 |
| MsG0380015429.01.T01 | AT3G45390 | 33.621 | 116 | 67 | 2 | 122 | 229 | 138 | 251 | 2.95e-11 | 65.1 |
| MsG0380015429.01.T01 | AT1G53080 | 27.536 | 207 | 108 | 10 | 73 | 242 | 73 | 274 | 9.35e-11 | 62.4 |
Find 95 sgRNAs with CRISPR-Local
Find 110 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTGATTTGTTTAAGATTT+GGG | 0.181046 | 3:+70097774 | MsG0380015429.01.T01:CDS |
| TCTTGGGTTGATTATGATAA+TGG | 0.190677 | 3:+70097679 | MsG0380015429.01.T01:CDS |
| AAATGTTTCTAAATCGAATT+TGG | 0.196755 | 3:+70097630 | MsG0380015429.01.T01:CDS |
| TCAGTGTCAGGGTCGAAATT+TGG | 0.208296 | 3:-70097226 | None:intergenic |
| ATATTGATTTGTTTAAGATT+TGG | 0.270538 | 3:+70097773 | MsG0380015429.01.T01:CDS |
| AGGGTCGAAATTTGGGTTAT+TGG | 0.280777 | 3:-70097218 | None:intergenic |
| TGTCCATCATTAGGATTAAC+AGG | 0.301009 | 3:-70097922 | None:intergenic |
| CAATGATGCACATTCTGTTC+AGG | 0.306567 | 3:+70097831 | MsG0380015429.01.T01:CDS |
| GGTTACATAGATTGGAAGTT+AGG | 0.315725 | 3:+70097701 | MsG0380015429.01.T01:CDS |
| GATTGTTCTTGTCCATCATT+AGG | 0.325616 | 3:-70097931 | None:intergenic |
| GATCGCCGGGGATGAGAATA+AGG | 0.332942 | 3:-70097435 | None:intergenic |
| TGATAATGGGTTACATAGAT+TGG | 0.347317 | 3:+70097693 | MsG0380015429.01.T01:CDS |
| GTGGTGAAAAGTTGAAATCT+TGG | 0.349897 | 3:+70097662 | MsG0380015429.01.T01:CDS |
| CAGTGTCAGGGTCGAAATTT+GGG | 0.354113 | 3:-70097225 | None:intergenic |
| CTTGGGTTGATTATGATAAT+GGG | 0.356122 | 3:+70097680 | MsG0380015429.01.T01:CDS |
| TTGAAGAACGGTACAGATTC+GGG | 0.365464 | 3:+70097883 | MsG0380015429.01.T01:CDS |
| AGAATGAACAAAGAGGATTA+AGG | 0.368348 | 3:-70097185 | None:intergenic |
| CTTGAAGAACGGTACAGATT+CGG | 0.376851 | 3:+70097882 | MsG0380015429.01.T01:CDS |
| ATCGCCGGCGTCGTGGGAAA+TGG | 0.381849 | 3:-70097404 | None:intergenic |
| GAAATTTGGGTTATTGGAAA+TGG | 0.387431 | 3:-70097212 | None:intergenic |
| CTGAACAGAATGTGCATCAT+TGG | 0.389264 | 3:-70097830 | None:intergenic |
| AATGCGGCGGCAAGATCGCC+GGG | 0.393977 | 3:-70097448 | None:intergenic |
| AGGTTGTTCGTGTTTATTCA+TGG | 0.403375 | 3:+70097851 | MsG0380015429.01.T01:CDS |
| TGAGAGGGTGACGGCGGAGG+AGG | 0.404801 | 3:-70097339 | None:intergenic |
| CTTACATCAGAAGGATGTTC+AGG | 0.407512 | 3:-70098111 | None:intergenic |
| TCAATATTATGTGAAACAAT+TGG | 0.410050 | 3:-70097757 | None:intergenic |
| AATCATGTTGGTATTAATCT+AGG | 0.411920 | 3:+70097583 | MsG0380015429.01.T01:CDS |
| GGTAATGGCTCCTATGGTCT+TGG | 0.418413 | 3:+70097475 | MsG0380015429.01.T01:CDS |
| TGGAACAGTTTGTGTTGTAT+TGG | 0.419186 | 3:+70098017 | MsG0380015429.01.T01:CDS |
| GAATGCGGCGGCAAGATCGC+CGG | 0.435615 | 3:-70097449 | None:intergenic |
| TGTTGTATTGGTGACATTTG+TGG | 0.442377 | 3:+70098029 | MsG0380015429.01.T01:CDS |
| AGAAAGAGGAAGAAGGAGAA+TGG | 0.446724 | 3:-70097154 | None:intergenic |
| GAGGGTGACGGCGGAGGAGG+AGG | 0.450131 | 3:-70097336 | None:intergenic |
| GCCGCCGCATTCCCCGGTAA+TGG | 0.451857 | 3:+70097460 | MsG0380015429.01.T01:CDS |
| TTCCCCGACAAAACCGGAGG+TGG | 0.452698 | 3:+70097271 | MsG0380015429.01.T01:CDS |
| AGACCATAGGAGCCATTACC+GGG | 0.461531 | 3:-70097472 | None:intergenic |
| GAATTCAACAGAGAAGGAAA+TGG | 0.462189 | 3:-70097374 | None:intergenic |
| GATCTTGCCGCCGCATTCCC+CGG | 0.469818 | 3:+70097454 | MsG0380015429.01.T01:CDS |
| AATTCAACAGAGAAGGAAAT+GGG | 0.478420 | 3:-70097373 | None:intergenic |
| GTGACGGCGGAGGAGGAGGC+CGG | 0.478520 | 3:-70097332 | None:intergenic |
| CTGAACATCCTTCTGATGTA+AGG | 0.480490 | 3:+70098112 | MsG0380015429.01.T01:CDS |
| TTTGACGTGGGACCCACCTC+CGG | 0.481870 | 3:-70097284 | None:intergenic |
| CGTCCTTTGACGTTTCTAGC+CGG | 0.484674 | 3:+70097985 | MsG0380015429.01.T01:CDS |
| AAGACCATAGGAGCCATTAC+CGG | 0.493387 | 3:-70097473 | None:intergenic |
| TAGCTGTTGGTCGGAGTAGG+AGG | 0.495357 | 3:-70097505 | None:intergenic |
| ATTTCCCACGACGCCGGCGA+TGG | 0.496761 | 3:+70097406 | MsG0380015429.01.T01:CDS |
| TCGCCGTAGAGATCAGTGTC+AGG | 0.500937 | 3:-70097238 | None:intergenic |
| ATGTGAGAGGGTGACGGCGG+AGG | 0.510530 | 3:-70097342 | None:intergenic |
| TGGTGAAAAGTTGAAATCTT+GGG | 0.517493 | 3:+70097663 | MsG0380015429.01.T01:CDS |
| TTAATCCTTATTCTCATCCC+CGG | 0.518155 | 3:+70097430 | MsG0380015429.01.T01:CDS |
| CAACCTGTTAATCCTAATGA+TGG | 0.518584 | 3:+70097919 | MsG0380015429.01.T01:CDS |
| TTCCCCGGTAATGGCTCCTA+TGG | 0.521893 | 3:+70097469 | MsG0380015429.01.T01:CDS |
| ACCAACATTATCATCCTTCG+AGG | 0.522511 | 3:-70097548 | None:intergenic |
| CTTTCATACCTTACATCAGA+AGG | 0.538961 | 3:-70098120 | None:intergenic |
| ATTGATTTGTTTAAGATTTG+GGG | 0.539095 | 3:+70097775 | MsG0380015429.01.T01:CDS |
| ACGATACTTTCTTCTATTCG+CGG | 0.544681 | 3:-70097965 | None:intergenic |
| GAAGGTGAATTCAACAGAGA+AGG | 0.546485 | 3:-70097380 | None:intergenic |
| TAAACCATCGCCGGCGTCGT+GGG | 0.552212 | 3:-70097410 | None:intergenic |
| TGTTCGTGTTTATTCATGGA+AGG | 0.552598 | 3:+70097855 | MsG0380015429.01.T01:CDS |
| CTTCTGATGTAAGGTATGAA+AGG | 0.555951 | 3:+70098121 | MsG0380015429.01.T01:CDS |
| AGGAGAGAAGCCAAGACCAT+AGG | 0.563933 | 3:-70097485 | None:intergenic |
| TTCTCCATTTCCCACGACGC+CGG | 0.564072 | 3:+70097400 | MsG0380015429.01.T01:CDS |
| ATGGGATCGGTGAATGTGAG+AGG | 0.568660 | 3:-70097355 | None:intergenic |
| CACCACTCTTCTCTCACCGC+CGG | 0.576459 | 3:+70097313 | MsG0380015429.01.T01:CDS |
| CGGCGGTGAGAGAAGAGTGG+TGG | 0.580383 | 3:-70097312 | None:intergenic |
| AGGTAGCTGTTGGTCGGAGT+AGG | 0.587982 | 3:-70097508 | None:intergenic |
| GGCGTCGTGGGAAATGGAGA+AGG | 0.588910 | 3:-70097398 | None:intergenic |
| AACAGAGAAGGAAATGGGAT+CGG | 0.595227 | 3:-70097368 | None:intergenic |
| CGGTGAATGTGAGAGGGTGA+CGG | 0.596072 | 3:-70097348 | None:intergenic |
| TGGAAGGTTAACTTGAAGAA+CGG | 0.599662 | 3:+70097871 | MsG0380015429.01.T01:CDS |
| TCCCCGACAAAACCGGAGGT+GGG | 0.602041 | 3:+70097272 | MsG0380015429.01.T01:CDS |
| GGAGCCATTACCGGGGAATG+CGG | 0.602504 | 3:-70097464 | None:intergenic |
| TTCGACGCCGAGGTAGCTGT+TGG | 0.602537 | 3:-70097518 | None:intergenic |
| GCCATTACCGGGGAATGCGG+CGG | 0.605283 | 3:-70097461 | None:intergenic |
| ACCTCGAAGGATGATAATGT+TGG | 0.606712 | 3:+70097547 | MsG0380015429.01.T01:CDS |
| GGCGGTGAGAGAAGAGTGGT+GGG | 0.609564 | 3:-70097311 | None:intergenic |
| TTAAACCATCGCCGGCGTCG+TGG | 0.611690 | 3:-70097411 | None:intergenic |
| TGGAAGAAGAATGAACAAAG+AGG | 0.612045 | 3:-70097192 | None:intergenic |
| ACGCCGAGGTAGCTGTTGGT+CGG | 0.612933 | 3:-70097514 | None:intergenic |
| ACGGCGGAGGAGGAGGCCGG+CGG | 0.613899 | 3:-70097329 | None:intergenic |
| AATAAGGATTAAACCATCGC+CGG | 0.622990 | 3:-70097419 | None:intergenic |
| GACCCTGACACTGATCTCTA+CGG | 0.623175 | 3:+70097235 | MsG0380015429.01.T01:CDS |
| GATCTGAATGCTAATCATGT+TGG | 0.626476 | 3:+70097571 | MsG0380015429.01.T01:CDS |
| GGCCGGCGGTGAGAGAAGAG+TGG | 0.636309 | 3:-70097315 | None:intergenic |
| CGTCGAATTCGACACCTCGA+AGG | 0.636367 | 3:+70097534 | MsG0380015429.01.T01:CDS |
| ACTCCGACCAACAGCTACCT+CGG | 0.638798 | 3:+70097511 | MsG0380015429.01.T01:CDS |
| CGCCGTAGAGATCAGTGTCA+GGG | 0.646942 | 3:-70097237 | None:intergenic |
| ACACCGGCTAGAAACGTCAA+AGG | 0.658885 | 3:-70097988 | None:intergenic |
| TGGGATCGGTGAATGTGAGA+GGG | 0.666191 | 3:-70097354 | None:intergenic |
| ATGCGGCGGCAAGATCGCCG+GGG | 0.670534 | 3:-70097447 | None:intergenic |
| AGGTGTCGAATTCGACGCCG+AGG | 0.693569 | 3:-70097528 | None:intergenic |
| TGAATGTGAGAGGGTGACGG+CGG | 0.695316 | 3:-70097345 | None:intergenic |
| AGTGGTGGGTGAGTTTGACG+TGG | 0.698635 | 3:-70097297 | None:intergenic |
| GACCATAGGAGCCATTACCG+GGG | 0.710246 | 3:-70097471 | None:intergenic |
| GTGGTGGGTGAGTTTGACGT+GGG | 0.751611 | 3:-70097296 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTGATTTGTTTAAGATT+TGG | + | Chr3:70097773-70097792 | MsG0380015429.01.T01:CDS | 15.0% |
| !!! | TATTGATTTGTTTAAGATTT+GGG | + | Chr3:70097774-70097793 | MsG0380015429.01.T01:CDS | 15.0% |
| !! | TCAATATTATGTGAAACAAT+TGG | - | Chr3:70097760-70097779 | None:intergenic | 20.0% |
| !!! | AAATGTTTCTAAATCGAATT+TGG | + | Chr3:70097630-70097649 | MsG0380015429.01.T01:CDS | 20.0% |
| !!! | ATTGATTTGTTTAAGATTTG+GGG | + | Chr3:70097775-70097794 | MsG0380015429.01.T01:CDS | 20.0% |
| ! | AATCATGTTGGTATTAATCT+AGG | + | Chr3:70097583-70097602 | MsG0380015429.01.T01:CDS | 25.0% |
| !!! | ATTTGTGGTTTTGTTTATGT+GGG | + | Chr3:70098044-70098063 | MsG0380015429.01.T01:CDS | 25.0% |
| !!! | GGTAATCAACCTATTTTTAT+GGG | + | Chr3:70097796-70097815 | MsG0380015429.01.T01:CDS | 25.0% |
| AATTCAACAGAGAAGGAAAT+GGG | - | Chr3:70097376-70097395 | None:intergenic | 30.0% | |
| AGAATGAACAAAGAGGATTA+AGG | - | Chr3:70097188-70097207 | None:intergenic | 30.0% | |
| GAACTCAAACCCATAAAAAT+AGG | - | Chr3:70097808-70097827 | None:intergenic | 30.0% | |
| TGGTGAAAAGTTGAAATCTT+GGG | + | Chr3:70097663-70097682 | MsG0380015429.01.T01:CDS | 30.0% | |
| TTAAGGAGAAAAAGAGAAAG+AGG | - | Chr3:70097171-70097190 | None:intergenic | 30.0% | |
| ! | GAAATTTGGGTTATTGGAAA+TGG | - | Chr3:70097215-70097234 | None:intergenic | 30.0% |
| !! | CTTGGGTTGATTATGATAAT+GGG | + | Chr3:70097680-70097699 | MsG0380015429.01.T01:CDS | 30.0% |
| !! | TCTTGGGTTGATTATGATAA+TGG | + | Chr3:70097679-70097698 | MsG0380015429.01.T01:CDS | 30.0% |
| !! | TGATAATGGGTTACATAGAT+TGG | + | Chr3:70097693-70097712 | MsG0380015429.01.T01:CDS | 30.0% |
| !!! | CATTTGTGGTTTTGTTTATG+TGG | + | Chr3:70098043-70098062 | MsG0380015429.01.T01:CDS | 30.0% |
| !!! | GGGTAATCAACCTATTTTTA+TGG | + | Chr3:70097795-70097814 | MsG0380015429.01.T01:CDS | 30.0% |
| !!! | TCGAATTTGGTTTTGAATAG+TGG | + | Chr3:70097643-70097662 | MsG0380015429.01.T01:CDS | 30.0% |
| AACTGTTCCAAAAATCACAC+CGG | - | Chr3:70098007-70098026 | None:intergenic | 35.0% | |
| AATAAGGATTAAACCATCGC+CGG | - | Chr3:70097422-70097441 | None:intergenic | 35.0% | |
| ACGATACTTTCTTCTATTCG+CGG | - | Chr3:70097968-70097987 | None:intergenic | 35.0% | |
| AGGTTGTTCGTGTTTATTCA+TGG | + | Chr3:70097851-70097870 | MsG0380015429.01.T01:CDS | 35.0% | |
| CAACCTGTTAATCCTAATGA+TGG | + | Chr3:70097919-70097938 | MsG0380015429.01.T01:CDS | 35.0% | |
| CTTCTGATGTAAGGTATGAA+AGG | + | Chr3:70098121-70098140 | MsG0380015429.01.T01:CDS | 35.0% | |
| CTTTCATACCTTACATCAGA+AGG | - | Chr3:70098123-70098142 | None:intergenic | 35.0% | |
| GAAAAAGAGAAAGAGGAAGA+AGG | - | Chr3:70097164-70097183 | None:intergenic | 35.0% | |
| GAATTCAACAGAGAAGGAAA+TGG | - | Chr3:70097377-70097396 | None:intergenic | 35.0% | |
| GATCTGAATGCTAATCATGT+TGG | + | Chr3:70097571-70097590 | MsG0380015429.01.T01:CDS | 35.0% | |
| GATTGTTCTTGTCCATCATT+AGG | - | Chr3:70097934-70097953 | None:intergenic | 35.0% | |
| GGTTACATAGATTGGAAGTT+AGG | + | Chr3:70097701-70097720 | MsG0380015429.01.T01:CDS | 35.0% | |
| GTGGTGAAAAGTTGAAATCT+TGG | + | Chr3:70097662-70097681 | MsG0380015429.01.T01:CDS | 35.0% | |
| TGGAACAGTTTGTGTTGTAT+TGG | + | Chr3:70098017-70098036 | MsG0380015429.01.T01:CDS | 35.0% | |
| TGGAAGAAGAATGAACAAAG+AGG | - | Chr3:70097195-70097214 | None:intergenic | 35.0% | |
| TGTCCATCATTAGGATTAAC+AGG | - | Chr3:70097925-70097944 | None:intergenic | 35.0% | |
| TGTTCGTGTTTATTCATGGA+AGG | + | Chr3:70097855-70097874 | MsG0380015429.01.T01:CDS | 35.0% | |
| TTAATCCTTATTCTCATCCC+CGG | + | Chr3:70097430-70097449 | MsG0380015429.01.T01:CDS | 35.0% | |
| ! | TGGAAGGTTAACTTGAAGAA+CGG | + | Chr3:70097871-70097890 | MsG0380015429.01.T01:CDS | 35.0% |
| ! | TGTTGTATTGGTGACATTTG+TGG | + | Chr3:70098029-70098048 | MsG0380015429.01.T01:CDS | 35.0% |
| AACAGAGAAGGAAATGGGAT+CGG | - | Chr3:70097371-70097390 | None:intergenic | 40.0% | |
| ACCAACATTATCATCCTTCG+AGG | - | Chr3:70097551-70097570 | None:intergenic | 40.0% | |
| AGAAAGAGGAAGAAGGAGAA+TGG | - | Chr3:70097157-70097176 | None:intergenic | 40.0% | |
| CAATGATGCACATTCTGTTC+AGG | + | Chr3:70097831-70097850 | MsG0380015429.01.T01:CDS | 40.0% | |
| CTGAACAGAATGTGCATCAT+TGG | - | Chr3:70097833-70097852 | None:intergenic | 40.0% | |
| CTGAACATCCTTCTGATGTA+AGG | + | Chr3:70098112-70098131 | MsG0380015429.01.T01:CDS | 40.0% | |
| CTTACATCAGAAGGATGTTC+AGG | - | Chr3:70098114-70098133 | None:intergenic | 40.0% | |
| CTTGAAGAACGGTACAGATT+CGG | + | Chr3:70097882-70097901 | MsG0380015429.01.T01:CDS | 40.0% | |
| GAAGGTGAATTCAACAGAGA+AGG | - | Chr3:70097383-70097402 | None:intergenic | 40.0% | |
| TTGAAGAACGGTACAGATTC+GGG | + | Chr3:70097883-70097902 | MsG0380015429.01.T01:CDS | 40.0% | |
| ! | ACCTCGAAGGATGATAATGT+TGG | + | Chr3:70097547-70097566 | MsG0380015429.01.T01:CDS | 40.0% |
| ! | AGGGTCGAAATTTGGGTTAT+TGG | - | Chr3:70097221-70097240 | None:intergenic | 40.0% |
| !! | TTTCTAGCCGGTGTGATTTT+TGG | + | Chr3:70097997-70098016 | MsG0380015429.01.T01:CDS | 40.0% |
| AAGACCATAGGAGCCATTAC+CGG | - | Chr3:70097476-70097495 | None:intergenic | 45.0% | |
| CAGTGTCAGGGTCGAAATTT+GGG | - | Chr3:70097228-70097247 | None:intergenic | 45.0% | |
| TCAGTGTCAGGGTCGAAATT+TGG | - | Chr3:70097229-70097248 | None:intergenic | 45.0% | |
| ! | AAGCTTTTCCCCGACAAAAC+CGG | + | Chr3:70097265-70097284 | MsG0380015429.01.T01:CDS | 45.0% |
| AGACCATAGGAGCCATTACC+GGG | - | Chr3:70097475-70097494 | None:intergenic | 50.0% | |
| AGGAGAGAAGCCAAGACCAT+AGG | - | Chr3:70097488-70097507 | None:intergenic | 50.0% | |
| ATGGGATCGGTGAATGTGAG+AGG | - | Chr3:70097358-70097377 | None:intergenic | 50.0% | |
| GACCCTGACACTGATCTCTA+CGG | + | Chr3:70097235-70097254 | MsG0380015429.01.T01:CDS | 50.0% | |
| TGGGATCGGTGAATGTGAGA+GGG | - | Chr3:70097357-70097376 | None:intergenic | 50.0% | |
| ! | ACACCGGCTAGAAACGTCAA+AGG | - | Chr3:70097991-70098010 | None:intergenic | 50.0% |
| ! | GGTAATGGCTCCTATGGTCT+TGG | + | Chr3:70097475-70097494 | MsG0380015429.01.T01:CDS | 50.0% |
| !! | CGTCCTTTGACGTTTCTAGC+CGG | + | Chr3:70097985-70098004 | MsG0380015429.01.T01:CDS | 50.0% |
| ACTCCGACCAACAGCTACCT+CGG | + | Chr3:70097511-70097530 | MsG0380015429.01.T01:CDS | 55.0% | |
| AGGTAGCTGTTGGTCGGAGT+AGG | - | Chr3:70097511-70097530 | None:intergenic | 55.0% | |
| CGCCGTAGAGATCAGTGTCA+GGG | - | Chr3:70097240-70097259 | None:intergenic | 55.0% | |
| CGGTGAATGTGAGAGGGTGA+CGG | - | Chr3:70097351-70097370 | None:intergenic | 55.0% | |
| CGTCGAATTCGACACCTCGA+AGG | + | Chr3:70097534-70097553 | MsG0380015429.01.T01:CDS | 55.0% | |
| GACCATAGGAGCCATTACCG+GGG | - | Chr3:70097474-70097493 | None:intergenic | 55.0% | |
| GATCGCCGGGGATGAGAATA+AGG | - | Chr3:70097438-70097457 | None:intergenic | 55.0% | |
| TAGCTGTTGGTCGGAGTAGG+AGG | - | Chr3:70097508-70097527 | None:intergenic | 55.0% | |
| TCGCCGTAGAGATCAGTGTC+AGG | - | Chr3:70097241-70097260 | None:intergenic | 55.0% | |
| TTCTCCATTTCCCACGACGC+CGG | + | Chr3:70097400-70097419 | MsG0380015429.01.T01:CDS | 55.0% | |
| ! | CTTTTCCCCGACAAAACCGG+AGG | + | Chr3:70097268-70097287 | MsG0380015429.01.T01:CDS | 55.0% |
| ! | TGAATGTGAGAGGGTGACGG+CGG | - | Chr3:70097348-70097367 | None:intergenic | 55.0% |
| ! | TTCCCCGGTAATGGCTCCTA+TGG | + | Chr3:70097469-70097488 | MsG0380015429.01.T01:CDS | 55.0% |
| !! | AGTGGTGGGTGAGTTTGACG+TGG | - | Chr3:70097300-70097319 | None:intergenic | 55.0% |
| !! | GTGGTGGGTGAGTTTGACGT+GGG | - | Chr3:70097299-70097318 | None:intergenic | 55.0% |
| ACGCCGAGGTAGCTGTTGGT+CGG | - | Chr3:70097517-70097536 | None:intergenic | 60.0% | |
| CACCACTCTTCTCTCACCGC+CGG | + | Chr3:70097313-70097332 | MsG0380015429.01.T01:CDS | 60.0% | |
| GGAGCCATTACCGGGGAATG+CGG | - | Chr3:70097467-70097486 | None:intergenic | 60.0% | |
| GGCGGTGAGAGAAGAGTGGT+GGG | - | Chr3:70097314-70097333 | None:intergenic | 60.0% | |
| GGCGTCGTGGGAAATGGAGA+AGG | - | Chr3:70097401-70097420 | None:intergenic | 60.0% | |
| TAAACCATCGCCGGCGTCGT+GGG | - | Chr3:70097413-70097432 | None:intergenic | 60.0% | |
| TCCCCGACAAAACCGGAGGT+GGG | + | Chr3:70097272-70097291 | MsG0380015429.01.T01:CDS | 60.0% | |
| TTAAACCATCGCCGGCGTCG+TGG | - | Chr3:70097414-70097433 | None:intergenic | 60.0% | |
| TTCCCCGACAAAACCGGAGG+TGG | + | Chr3:70097271-70097290 | MsG0380015429.01.T01:CDS | 60.0% | |
| TTCGACGCCGAGGTAGCTGT+TGG | - | Chr3:70097521-70097540 | None:intergenic | 60.0% | |
| TTTGACGTGGGACCCACCTC+CGG | - | Chr3:70097287-70097306 | None:intergenic | 60.0% | |
| !! | ACCCACCTCCGGTTTTGTCG+GGG | - | Chr3:70097276-70097295 | None:intergenic | 60.0% |
| !! | AGGTGTCGAATTCGACGCCG+AGG | - | Chr3:70097531-70097550 | None:intergenic | 60.0% |
| !! | GACCCACCTCCGGTTTTGTC+GGG | - | Chr3:70097277-70097296 | None:intergenic | 60.0% |
| !! | GGACCCACCTCCGGTTTTGT+CGG | - | Chr3:70097278-70097297 | None:intergenic | 60.0% |
| AATGCGGCGGCAAGATCGCC+GGG | - | Chr3:70097451-70097470 | None:intergenic | 65.0% | |
| ATCGCCGGCGTCGTGGGAAA+TGG | - | Chr3:70097407-70097426 | None:intergenic | 65.0% | |
| ATTTCCCACGACGCCGGCGA+TGG | + | Chr3:70097406-70097425 | MsG0380015429.01.T01:CDS | 65.0% | |
| CGGCGGTGAGAGAAGAGTGG+TGG | - | Chr3:70097315-70097334 | None:intergenic | 65.0% | |
| GAATGCGGCGGCAAGATCGC+CGG | - | Chr3:70097452-70097471 | None:intergenic | 65.0% | |
| GATCTTGCCGCCGCATTCCC+CGG | + | Chr3:70097454-70097473 | MsG0380015429.01.T01:CDS | 65.0% | |
| GCCATTACCGGGGAATGCGG+CGG | - | Chr3:70097464-70097483 | None:intergenic | 65.0% | |
| ! | ATGTGAGAGGGTGACGGCGG+AGG | - | Chr3:70097345-70097364 | None:intergenic | 65.0% |
| ATGCGGCGGCAAGATCGCCG+GGG | - | Chr3:70097450-70097469 | None:intergenic | 70.0% | |
| GCCGCCGCATTCCCCGGTAA+TGG | + | Chr3:70097460-70097479 | MsG0380015429.01.T01:CDS | 70.0% | |
| GGCCGGCGGTGAGAGAAGAG+TGG | - | Chr3:70097318-70097337 | None:intergenic | 70.0% | |
| ! | TGAGAGGGTGACGGCGGAGG+AGG | - | Chr3:70097342-70097361 | None:intergenic | 70.0% |
| GTGACGGCGGAGGAGGAGGC+CGG | - | Chr3:70097335-70097354 | None:intergenic | 75.0% | |
| ! | GAGGGTGACGGCGGAGGAGG+AGG | - | Chr3:70097339-70097358 | None:intergenic | 75.0% |
| ! | ACGGCGGAGGAGGAGGCCGG+CGG | - | Chr3:70097332-70097351 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 70097148 | 70098194 | 70097148 | ID=MsG0380015429.01;Name=MsG0380015429.01 |
| Chr3 | mRNA | 70097148 | 70098194 | 70097148 | ID=MsG0380015429.01.T01;Parent=MsG0380015429.01;Name=MsG0380015429.01.T01;_AED=0.19;_eAED=0.19;_QI=0|-1|0|1|-1|1|1|0|348 |
| Chr3 | exon | 70097148 | 70098194 | 70097148 | ID=MsG0380015429.01.T01:exon:23568;Parent=MsG0380015429.01.T01 |
| Chr3 | CDS | 70097148 | 70098194 | 70097148 | ID=MsG0380015429.01.T01:cds;Parent=MsG0380015429.01.T01 |
| Gene Sequence |
| Protein sequence |
