AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480023064.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023064.01.T01 MTR_8g085980 100.000 71 0 0 196 266 39 109 1.80e-41 152
MsG0480023064.01.T01 MTR_8g085980 53.237 139 33 5 271 379 284 420 7.54e-29 117
MsG0480023064.01.T01 MTR_7g085800 91.549 71 6 0 196 266 39 109 2.85e-38 143
MsG0480023064.01.T01 MTR_7g085800 51.799 139 35 5 271 379 284 420 6.49e-28 114
MsG0480023064.01.T01 MTR_4g097830 90.141 71 7 0 196 266 39 109 3.98e-37 140
MsG0480023064.01.T01 MTR_4g097830 49.640 139 38 5 271 379 284 420 6.70e-26 108
MsG0480023064.01.T01 MTR_1g106005 88.732 71 8 0 196 266 39 109 7.65e-37 139
MsG0480023064.01.T01 MTR_1g106005 48.921 139 39 5 271 379 284 420 2.69e-25 107
MsG0480023064.01.T01 MTR_3g110720 88.732 71 8 0 196 266 39 109 2.22e-36 138
MsG0480023064.01.T01 MTR_3g110720 49.640 139 38 5 271 379 284 420 8.13e-26 108
MsG0480023064.01.T01 MTR_6g029190 72.619 84 22 1 196 278 40 123 1.35e-31 125
MsG0480023064.01.T01 MTR_6g029190 49.640 139 38 5 271 379 285 421 9.14e-26 108
MsG0480023064.01.T01 MTR_3g063410 47.934 121 31 5 271 361 17 135 2.95e-21 90.1
MsG0480023064.01.T01 MTR_3g063410 47.934 121 31 5 271 361 56 174 4.99e-21 90.5
MsG0480023064.01.T01 MTR_2g041400 62.903 62 23 0 206 267 45 106 7.12e-20 91.3
MsG0480023064.01.T01 MTR_2g041400 41.727 139 49 5 271 379 279 415 4.74e-17 82.8
MsG0480023064.01.T01 MTR_2g041670 62.903 62 23 0 206 267 45 106 1.32e-19 90.9
MsG0480023064.01.T01 MTR_2g041670 41.727 139 49 5 271 379 279 415 3.21e-17 83.6
MsG0480023064.01.T01 MTR_8g107250 51.667 60 29 0 207 266 49 108 1.74e-15 78.2
MsG0480023064.01.T01 MTR_4g094535 48.333 60 31 0 207 266 48 107 7.21e-15 76.3
MsG0480023064.01.T01 MTR_4g019110 50.000 60 30 0 207 266 48 107 2.06e-14 75.1
MsG0480023064.01.T01 MTR_2g031310 48.333 60 31 0 207 266 48 107 2.33e-14 74.7
MsG0480023064.01.T01 MTR_1g101130 50.000 60 30 0 207 266 48 107 2.93e-14 74.3
MsG0480023064.01.T01 MTR_4g019090 48.333 60 31 0 207 266 48 107 4.35e-14 73.9
MsG0480023064.01.T01 MTR_8g098360 42.466 73 39 1 197 266 35 107 4.88e-14 73.9
MsG0480023064.01.T01 MTR_7g089120 48.333 60 31 0 207 266 48 107 7.22e-14 73.2
MsG0480023064.01.T01 MTR_4g017630 46.667 60 32 0 207 266 48 107 9.04e-14 73.2
MsG0480023064.01.T01 MTR_3g113970 43.333 60 34 0 207 266 50 109 4.93e-13 70.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023064.01.T01 AT5G19780 94.366 71 4 0 196 266 39 109 6.14e-40 148
MsG0480023064.01.T01 AT5G19780 53.237 139 33 5 271 379 284 420 5.04e-29 117
MsG0480023064.01.T01 AT5G19770 94.366 71 4 0 196 266 39 109 6.14e-40 148
MsG0480023064.01.T01 AT5G19770 53.237 139 33 5 271 379 284 420 5.04e-29 117
MsG0480023064.01.T01 AT1G64740 90.141 71 7 0 196 266 39 109 1.55e-37 141
MsG0480023064.01.T01 AT1G64740 51.095 137 39 4 271 379 284 420 8.95e-27 111
MsG0480023064.01.T01 AT4G14960 90.141 71 7 0 196 266 39 109 1.64e-37 141
MsG0480023064.01.T01 AT1G04820 90.141 71 7 0 196 266 39 109 5.03e-37 140
MsG0480023064.01.T01 AT1G04820 49.640 139 38 5 271 379 284 420 6.38e-26 109
MsG0480023064.01.T01 AT1G50010 90.141 71 7 0 196 266 39 109 5.03e-37 140
MsG0480023064.01.T01 AT1G50010 49.640 139 38 5 271 379 284 420 6.38e-26 109
MsG0480023064.01.T01 AT4G14960 90.141 71 7 0 196 266 39 109 5.46e-37 140
MsG0480023064.01.T01 AT4G14960 49.640 139 38 5 271 379 284 420 6.96e-26 108
MsG0480023064.01.T01 AT1G75780 41.250 80 40 1 207 286 49 121 9.39e-15 75.9
MsG0480023064.01.T01 AT4G20890 50.000 60 30 0 207 266 48 107 1.00e-14 75.9
MsG0480023064.01.T01 AT2G29550 50.000 60 30 0 207 266 48 107 1.35e-14 75.5
MsG0480023064.01.T01 AT1G20010 40.000 80 41 1 207 286 49 121 2.85e-14 74.7
MsG0480023064.01.T01 AT5G12250 40.000 80 41 1 207 286 48 120 3.12e-14 74.3
MsG0480023064.01.T01 AT5G23860 50.000 60 30 0 207 266 48 107 3.12e-14 74.3
MsG0480023064.01.T01 AT5G23860 50.000 60 30 0 207 266 48 107 3.12e-14 74.3
MsG0480023064.01.T01 AT5G44340 48.333 60 31 0 207 266 48 107 3.78e-14 74.3
MsG0480023064.01.T01 AT5G62700 48.333 60 31 0 207 266 48 107 1.63e-13 72.4
MsG0480023064.01.T01 AT5G62690 48.333 60 31 0 207 266 48 107 1.63e-13 72.4

Find 114 sgRNAs with CRISPR-Local

Find 299 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCAAACATCCGATAAAAT+TGG 0.189743 4:-80347402 MsG0480023064.01.T01:CDS
TTGGATTGGTTATGTTCTTT+TGG 0.208176 4:-80347225 MsG0480023064.01.T01:CDS
GCAAGATCTTCACGGGCTTC+TGG 0.254687 4:+80344059 None:intergenic
GGATGCTAGTTTGTTGTTCT+TGG 0.264519 4:-80347244 MsG0480023064.01.T01:CDS
TGTTGCTACACCTTCACTTT+TGG 0.290678 4:-80347697 MsG0480023064.01.T01:CDS
TTGCCGGAGATGAGTTGTTC+AGG 0.320827 4:+80345694 None:intergenic
AACACATTCTTCAGCGAAAC+TGG 0.328754 4:-80345811 MsG0480023064.01.T01:CDS
TCAAAGAAATTATCTGTAAC+TGG 0.347974 4:-80347337 MsG0480023064.01.T01:CDS
GTTAGCAGCGTCTTCTTTGC+CGG 0.348183 4:+80345678 None:intergenic
GAAATTATCTGTAACTGGAT+TGG 0.393050 4:-80347332 MsG0480023064.01.T01:CDS
ATGTCTTGAACTTATACAAT+AGG 0.393095 4:+80343961 None:intergenic
ATCCAAGGCATGGAAATATA+TGG 0.395569 4:-80344687 MsG0480023064.01.T01:CDS
CCATCATTCAACTTGTGAAA+TGG 0.395798 4:-80343844 MsG0480023064.01.T01:three_prime_UTR
TTCTCAAGATTCTCATAGTT+CGG 0.398017 4:+80347738 None:intergenic
TAGTTCGGTGGCGGTGGCTC+AGG 0.401668 4:+80347753 None:intergenic
AAAACAGCATTGGTAATTTC+CGG 0.404281 4:+80344736 None:intergenic
TTCTTCAGCGAAACTGGTTC+AGG 0.406764 4:-80345805 MsG0480023064.01.T01:CDS
ATTCTTATATTGCCAAAGTA+CGG 0.407696 4:-80347289 MsG0480023064.01.T01:CDS
CTAGTTTGTTGTTCTTGGAT+TGG 0.410916 4:-80347239 MsG0480023064.01.T01:CDS
AAATTATCTGTAACTGGATT+GGG 0.411049 4:-80347331 MsG0480023064.01.T01:CDS
CCATTTCACAAGTTGAATGA+TGG 0.412888 4:+80343844 None:intergenic
GTCGGTGAGGGCATGGAAGA+AGG 0.421400 4:-80344088 MsG0480023064.01.T01:CDS
GTTTGTCAAAATGCCTCAAA+AGG 0.424920 4:-80347535 MsG0480023064.01.T01:CDS
GTATGCGTCTAATTTGTTGT+AGG 0.427069 4:-80343815 MsG0480023064.01.T01:three_prime_UTR
GTGGTTTAAGGATGCACTAT+TGG 0.430823 4:-80347559 MsG0480023064.01.T01:intron
ACCAGTGGACAAGGCTCTCT+TGG 0.434966 4:+80344115 None:intergenic
AGCCATATATTTCCATGCCT+TGG 0.440177 4:+80344685 None:intergenic
TGGAACCACCATGGTGGCTT+CGG 0.441308 4:+80347657 None:intergenic
ATGTATGACAGGTGCCCAAC+TGG 0.444943 4:-80344283 MsG0480023064.01.T01:intron
TTCGGTGGCGGTGGCTCAGG+TGG 0.458016 4:+80347756 None:intergenic
TCGCACAATTCGACTATCAT+TGG 0.462562 4:+80347367 None:intergenic
TTCTTATATTGCCAAAGTAC+GGG 0.464871 4:-80347288 MsG0480023064.01.T01:CDS
TGCCGGAGATGAGTTGTTCA+GGG 0.468722 4:+80345695 None:intergenic
TTTATCGGATGTTTGAAAGT+AGG 0.469355 4:+80347407 None:intergenic
CGAGAGCAGCAAGATCTTCA+CGG 0.470136 4:+80344051 None:intergenic
TTCTCATAGTTCGGTGGCGG+TGG 0.479213 4:+80347747 None:intergenic
CACCATGGTGGCTTCGGAGA+TGG 0.487746 4:+80347663 None:intergenic
TATTACAGTGATTCTTCCGT+TGG 0.487833 4:-80345853 MsG0480023064.01.T01:intron
TGAAGGTGTAGCAACATTAA+CGG 0.488726 4:+80347704 None:intergenic
TCTCTTACGAACCCGTACTT+TGG 0.489412 4:+80347277 None:intergenic
GTCATCGATGAAGTTCGTTC+CGG 0.499563 4:-80345739 MsG0480023064.01.T01:CDS
TCGGTGAGGGCATGGAAGAA+GGG 0.500913 4:-80344087 MsG0480023064.01.T01:CDS
GGTGGCGGTGGCTCAGGTGG+AGG 0.502030 4:+80347759 None:intergenic
ATTAGAGAGTTTGTTGTGAT+GGG 0.508169 4:+80347436 None:intergenic
CACCCTGAACAACTCATCTC+CGG 0.515494 4:-80345697 MsG0480023064.01.T01:CDS
ATCGAACTTGTGATCAATGC+GGG 0.523345 4:+80344147 None:intergenic
GAGAAAGATTATGAAGAAGT+TGG 0.523429 4:-80344029 MsG0480023064.01.T01:CDS
GTTCAGGGTGGAAGAGTTGT+CGG 0.523884 4:+80345710 None:intergenic
TCCAAGAGAGCCTTGTCCAC+TGG 0.523981 4:-80344116 MsG0480023064.01.T01:CDS
ACAAGTTAGTTGGTGTACCT+TGG 0.526540 4:-80347496 MsG0480023064.01.T01:CDS
CACCTTAGCAAGGTCACCGC+AGG 0.528238 4:+80344222 None:intergenic
GGTAGGTGTCGGTGAGGGCA+TGG 0.528748 4:-80344095 MsG0480023064.01.T01:CDS
GAAGAGTTGTCGGTAGGTAC+CGG 0.530553 4:+80345720 None:intergenic
TTATGAAGAAGTTGGTGCTG+AGG 0.534554 4:-80344021 MsG0480023064.01.T01:CDS
CAGTAACAACACTGCTGTTG+CGG 0.536971 4:-80344179 MsG0480023064.01.T01:CDS
GATTAGAGAGTTTGTTGTGA+TGG 0.537133 4:+80347435 None:intergenic
GGAGGTCGCGTCGTTGAAAG+AGG 0.538356 4:+80347777 None:intergenic
CAAAGATGATGAGGAAGGAG+AGG 0.540336 4:-80343995 MsG0480023064.01.T01:exon
GATACCACATTGAAACCAGT+TGG 0.542620 4:+80344268 None:intergenic
TATGAAGAAGTTGGTGCTGA+GGG 0.548545 4:-80344020 MsG0480023064.01.T01:CDS
GGAAATTCGTGTTCAGCTTG+CGG 0.551958 4:+80347798 None:intergenic
TGATGAGCAGCTATCTGTGC+CGG 0.552703 4:-80344755 MsG0480023064.01.T01:CDS
ATTCGTGTTCAGCTTGCGGT+GGG 0.556069 4:+80347802 None:intergenic
GGGAGCAAAGATGATGAGGA+AGG 0.557797 4:-80344000 MsG0480023064.01.T01:exon
CGGTGAGGGCATGGAAGAAG+GGG 0.558712 4:-80344086 MsG0480023064.01.T01:CDS
GAGAGCAGCAAGATCTTCAC+GGG 0.561278 4:+80344052 None:intergenic
CACACTTAGCATCTACTAGC+AGG 0.568033 4:+80344710 None:intergenic
GTCCTGCGGTGACCTTGCTA+AGG 0.571027 4:-80344224 MsG0480023064.01.T01:CDS
ATACCACATTGAAACCAGTT+GGG 0.573083 4:+80344269 None:intergenic
CAGCTCTTTGCACCTTAGCA+AGG 0.580894 4:+80344212 None:intergenic
AATTCGTGTTCAGCTTGCGG+TGG 0.581106 4:+80347801 None:intergenic
TAGCAGGCTCAAAACAGCAT+TGG 0.582550 4:+80344726 None:intergenic
TCAGTCACTATGGATTGCCA+AGG 0.590368 4:+80347479 None:intergenic
AGATTCTCATAGTTCGGTGG+CGG 0.594918 4:+80347744 None:intergenic
TCAAGATTCTCATAGTTCGG+TGG 0.599909 4:+80347741 None:intergenic
AGATCTACGAAGACGGCGCG+TGG 0.600243 4:+80345772 None:intergenic
CCTTGTCCACTGGTAGGTGT+CGG 0.600318 4:-80344106 MsG0480023064.01.T01:CDS
GGTCACCGCAGGACAACTGA+AGG 0.602549 4:+80344233 None:intergenic
CTGAGGGAGCAAAGATGATG+AGG 0.603600 4:-80344004 MsG0480023064.01.T01:exon
TCCACTGGTAGGTGTCGGTG+AGG 0.604269 4:-80344101 MsG0480023064.01.T01:CDS
TAAAAGAACAATACGAGTGG+AGG 0.605775 4:+80343886 None:intergenic
TGCATCGTGTGCTACTCCAA+CGG 0.608526 4:+80345837 None:intergenic
CCACTGGTAGGTGTCGGTGA+GGG 0.613887 4:-80344100 MsG0480023064.01.T01:CDS
AGAGAGCCTTGTCCACTGGT+AGG 0.615138 4:-80344112 MsG0480023064.01.T01:CDS
GCTAAGTGTGATCCAAGGCA+TGG 0.624210 4:-80344697 MsG0480023064.01.T01:CDS
TTCGTAAGAGATTGAATGAG+CGG 0.624563 4:-80347265 MsG0480023064.01.T01:CDS
CACCGCAGGACAACTGAAGG+AGG 0.624755 4:+80344236 None:intergenic
TAACAACACTGCTGTTGCGG+AGG 0.625191 4:-80344176 MsG0480023064.01.T01:CDS
TTCGCTAGAGGACACTACAC+TGG 0.625494 4:-80345652 MsG0480023064.01.T01:intron
GGAACGAACTTCATCGATGA+CGG 0.631624 4:+80345741 None:intergenic
GCAGAGAAGATCTCCTCTTG+AGG 0.631848 4:+80347824 None:intergenic
CCGACACCTACCAGTGGACA+AGG 0.636428 4:+80344106 None:intergenic
GGGTTCGAGATCTACGAAGA+CGG 0.637629 4:+80345765 None:intergenic
ATGGTGGCTTCGGAGATGGA+CGG 0.638284 4:+80347667 None:intergenic
GCTGCTAACAATTTCGCTAG+AGG 0.638911 4:-80345664 MsG0480023064.01.T01:CDS
CGAACTTCATCGATGACGGT+GGG 0.641237 4:+80345745 None:intergenic
GTCCATCTCCGAAGCCACCA+TGG 0.641628 4:-80347665 MsG0480023064.01.T01:CDS
ATGGTGGAGACGACCTCAAG+AGG 0.643012 4:-80347837 MsG0480023064.01.T01:CDS
AGCCTCCTTCAGTTGTCCTG+CGG 0.644676 4:-80344238 MsG0480023064.01.T01:CDS
ACGAACTTCATCGATGACGG+TGG 0.644676 4:+80345744 None:intergenic
CGGATGAGTGCCAAAAGTGA+AGG 0.650362 4:+80347687 None:intergenic
TAGATGCTAAGTGTGATCCA+AGG 0.653940 4:-80344702 MsG0480023064.01.T01:CDS
ATGATGGAACTATATCACAC+TGG 0.656762 4:+80343860 None:intergenic
AGGGTGGAAGAGTTGTCGGT+AGG 0.660011 4:+80345714 None:intergenic
AAATAAAAGAACAATACGAG+TGG 0.663738 4:+80343883 None:intergenic
GGCTTGCTGTTGATGTACCG+TGG 0.670561 4:-80344666 MsG0480023064.01.T01:intron
CCCTCACCGACACCTACCAG+TGG 0.673971 4:+80344100 None:intergenic
AACAAACCGTGGAACCACCA+TGG 0.679140 4:+80347648 None:intergenic
CGGAGATGAGTTGTTCAGGG+TGG 0.684993 4:+80345698 None:intergenic
AAACCGTGGAACCACCATGG+TGG 0.712374 4:+80347651 None:intergenic
GATCGAACTTGTGATCAATG+CGG 0.718228 4:+80344146 None:intergenic
CATCTCCGAAGCCACCATGG+TGG 0.720496 4:-80347662 MsG0480023064.01.T01:intron
GTGCCCAACTGGTTTCAATG+TGG 0.724009 4:-80344272 MsG0480023064.01.T01:CDS
AGGTGTAGCAACATTAACGG+AGG 0.749675 4:+80347707 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAGATTAAAAAATTAACG+AGG - Chr4:80344548-80344567 MsG0480023064.01.T01:intron 15.0%
!! AACAAATAAAGAGTTAATTA+TGG - Chr4:80345138-80345157 MsG0480023064.01.T01:intron 15.0%
!! TAAAAAAAAAAAAGTTGTGT+AGG + Chr4:80345090-80345109 None:intergenic 15.0%
!! TCACAAATTAAAAAAACTTT+AGG + Chr4:80345681-80345700 None:intergenic 15.0%
!! TGTAACGAAAATAAAATTAA+AGG - Chr4:80344642-80344661 MsG0480023064.01.T01:intron 15.0%
!! TTATTTCAAATCAGTATTAT+AGG + Chr4:80347170-80347189 None:intergenic 15.0%
!!! AAATCATTCTATTTTGTTTT+GGG + Chr4:80344987-80345006 None:intergenic 15.0%
!!! ATTAACTCTTTATTTGTTTT+TGG + Chr4:80345136-80345155 None:intergenic 15.0%
!!! TTTATTTGTTTTTGGTAAAA+AGG + Chr4:80345128-80345147 None:intergenic 15.0%
!! AATCATGTTGATGTAAATAT+TGG - Chr4:80346522-80346541 MsG0480023064.01.T01:intron 20.0%
!! CCTTTATTCAAAATAGAATA+GGG - Chr4:80344742-80344761 MsG0480023064.01.T01:CDS 20.0%
!! CGATACTAAAAAAAACTTAA+GGG - Chr4:80344701-80344720 MsG0480023064.01.T01:CDS 20.0%
!! CTGTTAAAAAAAAGAAGAAT+GGG + Chr4:80345054-80345073 None:intergenic 20.0%
!! CTTTATTCAAAATAGAATAG+GGG - Chr4:80344743-80344762 MsG0480023064.01.T01:CDS 20.0%
!! GTATTAGTAGTAGTAAATTA+AGG + Chr4:80345393-80345412 None:intergenic 20.0%
!! TTCATATTATAATGTATGAC+AGG - Chr4:80347289-80347308 MsG0480023064.01.T01:CDS 20.0%
!!! GAAATCATTCTATTTTGTTT+TGG + Chr4:80344988-80345007 None:intergenic 20.0%
!!! GATTTTCTGTTTTTTTTTTG+TGG - Chr4:80346243-80346262 MsG0480023064.01.T01:intron 20.0%
!!! TCAAAATTGTCCAATTTTAT+CGG + Chr4:80344194-80344213 None:intergenic 20.0%
!!! TCTCTCATTTTTTTCTTTTT+TGG + Chr4:80345525-80345544 None:intergenic 20.0%
!!! TTGTTGATTATTTCTCTTTT+TGG + Chr4:80345019-80345038 None:intergenic 20.0%
!!! TTTATTTTCGTTACACTTTT+TGG + Chr4:80344637-80344656 None:intergenic 20.0%
!!! TTTTATAAGGGTAGATAATT+TGG - Chr4:80347104-80347123 MsG0480023064.01.T01:intron 20.0%
! AAAAATTTGTCCTTCAACAA+TGG - Chr4:80344439-80344458 MsG0480023064.01.T01:intron 25.0%
! AAATAAAAGAACAATACGAG+TGG + Chr4:80347703-80347722 None:intergenic 25.0%
! AAATTATCTGTAACTGGATT+GGG - Chr4:80344252-80344271 MsG0480023064.01.T01:CDS 25.0%
! ATGTCTTGAACTTATACAAT+AGG + Chr4:80347625-80347644 None:intergenic 25.0%
! ATTCTTATATTGCCAAAGTA+CGG - Chr4:80344294-80344313 MsG0480023064.01.T01:intron 25.0%
! CAATAACTATTGTAGAATGA+CGG - Chr4:80347029-80347048 MsG0480023064.01.T01:intron 25.0%
! CATGACAACTAAAGATATAA+AGG + Chr4:80344850-80344869 None:intergenic 25.0%
! CCATTTGAAGAAAAAATCTA+TGG - Chr4:80344937-80344956 MsG0480023064.01.T01:intron 25.0%
! GAAATGAAATAAACTAACCT+AGG + Chr4:80345648-80345667 None:intergenic 25.0%
! GAAATTATCAGTATTCACAT+CGG - Chr4:80345543-80345562 MsG0480023064.01.T01:intron 25.0%
! GCCTTTATTCAAAATAGAAT+AGG - Chr4:80344741-80344760 MsG0480023064.01.T01:CDS 25.0%
! GCGATACTAAAAAAAACTTA+AGG - Chr4:80344700-80344719 MsG0480023064.01.T01:CDS 25.0%
! GCTGTTAAAAAAAAGAAGAA+TGG + Chr4:80345055-80345074 None:intergenic 25.0%
! TCAAAGAAATTATCTGTAAC+TGG - Chr4:80344246-80344265 MsG0480023064.01.T01:CDS 25.0%
! TTTCAAACATCCGATAAAAT+TGG - Chr4:80344181-80344200 MsG0480023064.01.T01:CDS 25.0%
!! AAAAAAACAGAATCCTTTTG+AGG + Chr4:80344064-80344083 None:intergenic 25.0%
!! AATGAGCTTTTTACTACTTA+TGG - Chr4:80344670-80344689 MsG0480023064.01.T01:CDS 25.0%
!! ATGAGCTTTTTACTACTTAT+GGG - Chr4:80344671-80344690 MsG0480023064.01.T01:CDS 25.0%
!! TAATGGTGTGATTGTATTTT+TGG - Chr4:80346592-80346611 MsG0480023064.01.T01:intron 25.0%
!! TCTTTTCTTTTTGTGGTTTA+AGG - Chr4:80344012-80344031 MsG0480023064.01.T01:CDS 25.0%
!!! AGTTTTTTTTAGTATCGCTT+TGG + Chr4:80344698-80344717 None:intergenic 25.0%
!!! ATTGGTTTTTCTGTTTGTAA+TGG - Chr4:80346575-80346594 MsG0480023064.01.T01:intron 25.0%
!!! CCATAGATTTTTTCTTCAAA+TGG + Chr4:80344940-80344959 None:intergenic 25.0%
!!! CCCTATTCTATTTTGAATAA+AGG + Chr4:80344745-80344764 None:intergenic 25.0%
!!! GAAATTTTAGAAAGAAGAAG+TGG + Chr4:80345492-80345511 None:intergenic 25.0%
!!! TCAAAAGGATTCTGTTTTTT+TGG - Chr4:80344063-80344082 MsG0480023064.01.T01:CDS 25.0%
!!! TTTTTTTGGAACAAGTTAGT+TGG - Chr4:80344077-80344096 MsG0480023064.01.T01:CDS 25.0%
!!! TTTTTTTTTTGTGGTTCAGT+TGG - Chr4:80346252-80346271 MsG0480023064.01.T01:intron 25.0%
AAAAAAAAGAAGAATGGGTG+AGG + Chr4:80345049-80345068 None:intergenic 30.0%
AAAGCAAGAATCTCGAAATT+AGG + Chr4:80346219-80346238 None:intergenic 30.0%
AAGCAAGAATCTCGAAATTA+GGG + Chr4:80346218-80346237 None:intergenic 30.0%
ATAGATTGACACAGTTGAAT+TGG + Chr4:80344477-80344496 None:intergenic 30.0%
ATGAGAAATGAGAAATGAGA+AGG + Chr4:80345444-80345463 None:intergenic 30.0%
ATGGAAAAGAAATCCAAACT+TGG - Chr4:80346427-80346446 MsG0480023064.01.T01:intron 30.0%
CCTTATAAAAATTGCAGCTA+CGG + Chr4:80347094-80347113 None:intergenic 30.0%
GAAATTATCTGTAACTGGAT+TGG - Chr4:80344251-80344270 MsG0480023064.01.T01:CDS 30.0%
GAGAAAGATTATGAAGAAGT+TGG - Chr4:80347554-80347573 MsG0480023064.01.T01:intron 30.0%
GATTGATGTATAGATCATAG+TGG - Chr4:80346549-80346568 MsG0480023064.01.T01:intron 30.0%
TAGATTGACACAGTTGAATT+GGG + Chr4:80344476-80344495 None:intergenic 30.0%
TGAGAAATGAGAAATGAGAA+GGG + Chr4:80345443-80345462 None:intergenic 30.0%
TGATTGTTTCAAGCAAAAAG+AGG - Chr4:80347656-80347675 MsG0480023064.01.T01:intron 30.0%
TTAACCTCAAATGTCTTAGA+TGG + Chr4:80344597-80344616 None:intergenic 30.0%
TTCTCAAGATTCTCATAGTT+CGG + Chr4:80343848-80343867 None:intergenic 30.0%
TTCTTATATTGCCAAAGTAC+GGG - Chr4:80344295-80344314 MsG0480023064.01.T01:intron 30.0%
TTTATCGGATGTTTGAAAGT+AGG + Chr4:80344179-80344198 None:intergenic 30.0%
! ATTGATAAGGGTTTAGAATC+CGG + Chr4:80345300-80345319 None:intergenic 30.0%
! CGTAGCTGCAATTTTTATAA+GGG - Chr4:80347092-80347111 MsG0480023064.01.T01:intron 30.0%
! GTATGTGTCTTTTCTTTTTG+TGG - Chr4:80344005-80344024 MsG0480023064.01.T01:exon 30.0%
!! AAAACAGCATTGGTAATTTC+CGG + Chr4:80346850-80346869 None:intergenic 30.0%
!! ACAATTCACAACTTGTTACT+AGG - Chr4:80347211-80347230 MsG0480023064.01.T01:CDS 30.0%
!! AGATGGACTAACATTATAGA+TGG + Chr4:80344580-80344599 None:intergenic 30.0%
!! ATTAGAGAGTTTGTTGTGAT+GGG + Chr4:80344150-80344169 None:intergenic 30.0%
!!! ATAAGCTTTTTCAGTCACTA+TGG + Chr4:80344117-80344136 None:intergenic 30.0%
!!! GTGATTGTATTTTTGGATCT+AGG - Chr4:80346599-80346618 MsG0480023064.01.T01:intron 30.0%
!!! TTGGATTGGTTATGTTCTTT+TGG - Chr4:80344358-80344377 MsG0480023064.01.T01:intron 30.0%
AATTGGCTGATTAACTGTAC+CGG - Chr4:80346313-80346332 MsG0480023064.01.T01:intron 35.0%
ACTAGGACTTAATGTGATCT+GGG - Chr4:80347228-80347247 MsG0480023064.01.T01:CDS 35.0%
AGAATCTCGAAATTAGGGTT+AGG + Chr4:80346213-80346232 None:intergenic 35.0%
AGAGTTAAATCGGTGATGAT+TGG - Chr4:80345221-80345240 MsG0480023064.01.T01:intron 35.0%
AGATAAAGCGGGAATTGATA+AGG + Chr4:80345313-80345332 None:intergenic 35.0%
AGATTGACACAGTTGAATTG+GGG + Chr4:80344475-80344494 None:intergenic 35.0%
AGCATGAATGAATGAGGATA+CGG + Chr4:80346768-80346787 None:intergenic 35.0%
ATACCACATTGAAACCAGTT+GGG + Chr4:80347317-80347336 None:intergenic 35.0%
ATCCAAGGCATGGAAATATA+TGG - Chr4:80346896-80346915 MsG0480023064.01.T01:intron 35.0%
ATCTTGAATGTTGTACCTGA+GGG + Chr4:80346470-80346489 None:intergenic 35.0%
ATTTGTCCTTCAACAATGGA+TGG - Chr4:80344443-80344462 MsG0480023064.01.T01:intron 35.0%
CAACCTGAAAAAATCATCTC+CGG - Chr4:80346126-80346145 MsG0480023064.01.T01:intron 35.0%
CAATCTATCTGTAATGCTTG+TGG - Chr4:80344489-80344508 MsG0480023064.01.T01:intron 35.0%
CCATCATTCAACTTGTGAAA+TGG - Chr4:80347739-80347758 MsG0480023064.01.T01:CDS 35.0%
GAATCTCGAAATTAGGGTTA+GGG + Chr4:80346212-80346231 None:intergenic 35.0%
GATAAAGCGGGAATTGATAA+GGG + Chr4:80345312-80345331 None:intergenic 35.0%
GGAAATTGTAGATCTGTGTT+TGG - Chr4:80346278-80346297 MsG0480023064.01.T01:intron 35.0%
GTGTGACAAATCAAATCAGA+TGG + Chr4:80345369-80345388 None:intergenic 35.0%
GTTTGTCAAAATGCCTCAAA+AGG - Chr4:80344048-80344067 MsG0480023064.01.T01:CDS 35.0%
TAAAAGAACAATACGAGTGG+AGG + Chr4:80347700-80347719 None:intergenic 35.0%
TACTAGGACTTAATGTGATC+TGG - Chr4:80347227-80347246 MsG0480023064.01.T01:CDS 35.0%
TATTACAGTGATTCTTCCGT+TGG - Chr4:80345730-80345749 MsG0480023064.01.T01:CDS 35.0%
TGATGTATAGATCATAGTGG+TGG - Chr4:80346552-80346571 MsG0480023064.01.T01:intron 35.0%
TGGGCTACTAATTTCTCTTA+TGG - Chr4:80347247-80347266 MsG0480023064.01.T01:CDS 35.0%
TTCGTAAGAGATTGAATGAG+CGG - Chr4:80344318-80344337 MsG0480023064.01.T01:intron 35.0%
TTTGGATCGTGTTAGGAAAT+TGG - Chr4:80346296-80346315 MsG0480023064.01.T01:intron 35.0%
TTTGTCCTTCAACAATGGAT+GGG - Chr4:80344444-80344463 MsG0480023064.01.T01:intron 35.0%
! ATGATGGAACTATATCACAC+TGG + Chr4:80347726-80347745 None:intergenic 35.0%
! CCATTTCACAAGTTGAATGA+TGG + Chr4:80347742-80347761 None:intergenic 35.0%
! CCGTAGCTGCAATTTTTATA+AGG - Chr4:80347091-80347110 MsG0480023064.01.T01:intron 35.0%
! CTTTGGAAAAACATCAACCA+CGG + Chr4:80346937-80346956 None:intergenic 35.0%
! GAACGTCTTTCTGTTGATTA+TGG - Chr4:80346408-80346427 MsG0480023064.01.T01:intron 35.0%
! TAGTCCATCTAAGACATTTG+AGG - Chr4:80344590-80344609 MsG0480023064.01.T01:intron 35.0%
! TGAAGGTGTAGCAACATTAA+CGG + Chr4:80343882-80343901 None:intergenic 35.0%
! TTGATAAGGGTTTAGAATCC+GGG + Chr4:80345299-80345318 None:intergenic 35.0%
!! AACAGTACTCTGTGTTTTGA+TGG + Chr4:80346982-80347001 None:intergenic 35.0%
!! CTAGTTTGTTGTTCTTGGAT+TGG - Chr4:80344344-80344363 MsG0480023064.01.T01:intron 35.0%
!! GATTAGAGAGTTTGTTGTGA+TGG + Chr4:80344151-80344170 None:intergenic 35.0%
!! GTATGCGTCTAATTTGTTGT+AGG - Chr4:80347768-80347787 MsG0480023064.01.T01:CDS 35.0%
!! TATAGATCATAGTGGTGGAT+TGG - Chr4:80346557-80346576 MsG0480023064.01.T01:intron 35.0%
!!! TTTTCAGGTTGAAGAGTTGT+CGG + Chr4:80346117-80346136 None:intergenic 35.0%
!!! TTTTGGTTTTCAACGCTGTT+GGG - Chr4:80346347-80346366 MsG0480023064.01.T01:intron 35.0%
!!! TTTTTGGTTCATTCCGTCAA+GGG + Chr4:80344621-80344640 None:intergenic 35.0%
!!! TTTTTGGTTTTCAACGCTGT+TGG - Chr4:80346346-80346365 MsG0480023064.01.T01:intron 35.0%
AACACATTCTTCAGCGAAAC+TGG - Chr4:80345772-80345791 MsG0480023064.01.T01:CDS 40.0%
AACCAAAAACCCTTGAAGAC+CGG + Chr4:80346335-80346354 None:intergenic 40.0%
AGCCATATATTTCCATGCCT+TGG + Chr4:80346901-80346920 None:intergenic 40.0%
ATCGAACTTGTGATCAATGC+GGG + Chr4:80347439-80347458 None:intergenic 40.0%
ATCTGTGTTTGGATCGTGTT+AGG - Chr4:80346289-80346308 MsG0480023064.01.T01:intron 40.0%
ATTCGCTAGAGGAACTACAA+TGG - Chr4:80346169-80346188 MsG0480023064.01.T01:intron 40.0%
ATTGCTAACTAGTGCTCTCA+AGG + Chr4:80344810-80344829 None:intergenic 40.0%
CCAACGGAAAATTAGGGTTA+GGG + Chr4:80345974-80345993 None:intergenic 40.0%
GATACCACATTGAAACCAGT+TGG + Chr4:80347318-80347337 None:intergenic 40.0%
GATCGAACTTGTGATCAATG+CGG + Chr4:80347440-80347459 None:intergenic 40.0%
GATCTTGAATGTTGTACCTG+AGG + Chr4:80346471-80346490 None:intergenic 40.0%
GCTACTCCAACGGAAAATTA+GGG + Chr4:80345980-80345999 None:intergenic 40.0%
GGGTGTAGGATAAGATAAAG+CGG + Chr4:80345325-80345344 None:intergenic 40.0%
GGTGTAGGATAAGATAAAGC+GGG + Chr4:80345324-80345343 None:intergenic 40.0%
GTAGATGGTGAATCCAAGTT+TGG + Chr4:80346443-80346462 None:intergenic 40.0%
GTCGATAGAACACTGTTGTA+TGG + Chr4:80346646-80346665 None:intergenic 40.0%
GTGATGATTGGAGAAGAGAA+GGG - Chr4:80345233-80345252 MsG0480023064.01.T01:intron 40.0%
GTGGTTTAAGGATGCACTAT+TGG - Chr4:80344024-80344043 MsG0480023064.01.T01:CDS 40.0%
TAGATGCTAAGTGTGATCCA+AGG - Chr4:80346881-80346900 MsG0480023064.01.T01:intron 40.0%
TAGGTTTCAACTCTGTGTTG+TGG - Chr4:80346618-80346637 MsG0480023064.01.T01:intron 40.0%
TCAAGATTCTCATAGTTCGG+TGG + Chr4:80343845-80343864 None:intergenic 40.0%
TCCAACGGAAAATTAGGGTT+AGG + Chr4:80345975-80345994 None:intergenic 40.0%
TCGCACAATTCGACTATCAT+TGG + Chr4:80344219-80344238 None:intergenic 40.0%
TGCTACTCCAACGGAAAATT+AGG + Chr4:80345981-80346000 None:intergenic 40.0%
TTGTCCTTCAACAATGGATG+GGG - Chr4:80344445-80344464 MsG0480023064.01.T01:intron 40.0%
! ACAAGTTAGTTGGTGTACCT+TGG - Chr4:80344087-80344106 MsG0480023064.01.T01:CDS 40.0%
! ACACCAAAAGCCTGATTTGA+AGG + Chr4:80343971-80343990 None:intergenic 40.0%
! ACCAAAAGCCTGATTTGAAG+GGG + Chr4:80343969-80343988 None:intergenic 40.0%
! ATTAACTGTACCGGTCTTCA+AGG - Chr4:80346322-80346341 MsG0480023064.01.T01:intron 40.0%
! ATTTGAGGTTAACCCCTTGA+CGG - Chr4:80344605-80344624 MsG0480023064.01.T01:intron 40.0%
! CACCAAAAGCCTGATTTGAA+GGG + Chr4:80343970-80343989 None:intergenic 40.0%
! GACGAAAGCATGAATGAATG+AGG + Chr4:80346774-80346793 None:intergenic 40.0%
! GGCGATCTATGACATTTTGT+AGG - Chr4:80346713-80346732 MsG0480023064.01.T01:intron 40.0%
! TGTTGCTACACCTTCACTTT+TGG - Chr4:80343886-80343905 MsG0480023064.01.T01:three_prime_UTR 40.0%
! TTAACTGTACCGGTCTTCAA+GGG - Chr4:80346323-80346342 MsG0480023064.01.T01:intron 40.0%
! TTTTTGTGGTTCAGTTGGCA+AGG - Chr4:80346257-80346276 MsG0480023064.01.T01:intron 40.0%
!! AGAATTACCGACTTGGATTC+CGG + Chr4:80345574-80345593 None:intergenic 40.0%
!! AGGTTTGGGTTCACTTCTTT+TGG - Chr4:80346386-80346405 MsG0480023064.01.T01:intron 40.0%
!! CGTGGTTGATGTTTTTCCAA+AGG - Chr4:80346935-80346954 MsG0480023064.01.T01:intron 40.0%
!! GGATGCTAGTTTGTTGTTCT+TGG - Chr4:80344339-80344358 MsG0480023064.01.T01:intron 40.0%
!! GTACTGTTCAGTTTGTTGAC+TGG - Chr4:80346994-80347013 MsG0480023064.01.T01:intron 40.0%
!! TATGAAGAAGTTGGTGCTGA+GGG - Chr4:80347563-80347582 MsG0480023064.01.T01:intron 40.0%
!! TTATGAAGAAGTTGGTGCTG+AGG - Chr4:80347562-80347581 MsG0480023064.01.T01:intron 40.0%
!!! CTTTTTGGTTCATTCCGTCA+AGG + Chr4:80344622-80344641 None:intergenic 40.0%
!!! TTGCCGGAGATGATTTTTTC+AGG + Chr4:80346132-80346151 None:intergenic 40.0%
!!! TTTTGGTTCATTCCGTCAAG+GGG + Chr4:80344620-80344639 None:intergenic 40.0%
AAGATGCACTAGCCAGCATA+TGG - Chr4:80345189-80345208 MsG0480023064.01.T01:intron 45.0%
AAGGATGTCAATGCTGCTGT+TGG - Chr4:80346954-80346973 MsG0480023064.01.T01:intron 45.0%
AAGTGAACCCAAACCTGAAC+CGG + Chr4:80346382-80346401 None:intergenic 45.0%
AGGTGTAGCAACATTAACGG+AGG + Chr4:80343879-80343898 None:intergenic 45.0%
AGTATTCACATCGGTCAAGC+CGG - Chr4:80345552-80345571 MsG0480023064.01.T01:intron 45.0%
ATGAGGATACGGCACAAGAT+TGG + Chr4:80346757-80346776 None:intergenic 45.0%
CAAAGATGATGAGGAAGGAG+AGG - Chr4:80347588-80347607 MsG0480023064.01.T01:intron 45.0%
CACACTTAGCATCTACTAGC+AGG + Chr4:80346876-80346895 None:intergenic 45.0%
CACTGTTATCTCTGCTGCTA+AGG - Chr4:80346799-80346818 MsG0480023064.01.T01:intron 45.0%
CAGTAACAACACTGCTGTTG+CGG - Chr4:80347404-80347423 MsG0480023064.01.T01:CDS 45.0%
CATTCCCCATCCATTGTTGA+AGG + Chr4:80344452-80344471 None:intergenic 45.0%
CCAAGTCGGTAATTCTTGCT+GGG - Chr4:80345578-80345597 MsG0480023064.01.T01:intron 45.0%
GAATGTTGTACCTGAGGGAA+GGG + Chr4:80346465-80346484 None:intergenic 45.0%
GAGCTTTACTGTCTCGAACA+TGG - Chr4:80345600-80345619 MsG0480023064.01.T01:intron 45.0%
GCTGCTAACAATTTCGCTAG+AGG - Chr4:80345919-80345938 MsG0480023064.01.T01:intron 45.0%
GGAAATTCGTGTTCAGCTTG+CGG + Chr4:80343788-80343807 None:intergenic 45.0%
GGAACGAACTTCATCGATGA+CGG + Chr4:80345845-80345864 None:intergenic 45.0%
GGTGATGATTGGAGAAGAGA+AGG - Chr4:80345232-80345251 MsG0480023064.01.T01:intron 45.0%
GTCATCGATGAAGTTCGTTC+CGG - Chr4:80345844-80345863 MsG0480023064.01.T01:CDS 45.0%
TAGCAGGCTCAAAACAGCAT+TGG + Chr4:80346860-80346879 None:intergenic 45.0%
TCCAAGTCGGTAATTCTTGC+TGG - Chr4:80345577-80345596 MsG0480023064.01.T01:intron 45.0%
TCTCTTACGAACCCGTACTT+TGG + Chr4:80344309-80344328 None:intergenic 45.0%
TCTTCTTGAGCACACTGATG+TGG - Chr4:80346672-80346691 MsG0480023064.01.T01:intron 45.0%
TGAATGTTGTACCTGAGGGA+AGG + Chr4:80346466-80346485 None:intergenic 45.0%
! AGATTCTCATAGTTCGGTGG+CGG + Chr4:80343842-80343861 None:intergenic 45.0%
! CCCTAACCCTAATTTTCCGT+TGG - Chr4:80345971-80345990 MsG0480023064.01.T01:intron 45.0%
! CTGGATTGGGAAAAAGACTG+TGG - Chr4:80344265-80344284 MsG0480023064.01.T01:CDS 45.0%
! GTGGTGGGACAGAGTTAAAT+CGG - Chr4:80345211-80345230 MsG0480023064.01.T01:intron 45.0%
! TACCGGTCTTCAAGGGTTTT+TGG - Chr4:80346330-80346349 MsG0480023064.01.T01:intron 45.0%
! TCAGTCACTATGGATTGCCA+AGG + Chr4:80344107-80344126 None:intergenic 45.0%
! TTCTTCAGCGAAACTGGTTC+AGG - Chr4:80345778-80345797 MsG0480023064.01.T01:CDS 45.0%
!! ACAGCAGCATTGACATCCTT+TGG + Chr4:80346954-80346973 None:intergenic 45.0%
AACAAACCGTGGAACCACCA+TGG + Chr4:80343938-80343957 None:intergenic 50.0%
AACCTAGGCATCATGCCATC+AGG + Chr4:80345633-80345652 None:intergenic 50.0%
AATTCGTGTTCAGCTTGCGG+TGG + Chr4:80343785-80343804 None:intergenic 50.0%
ACTAGCCAGCATATGGTGGT+GGG - Chr4:80345196-80345215 MsG0480023064.01.T01:intron 50.0%
AGAAGAGAAGGGTCGATGCT+AGG - Chr4:80345244-80345263 MsG0480023064.01.T01:intron 50.0%
ATGCACTAGCCAGCATATGG+TGG - Chr4:80345192-80345211 MsG0480023064.01.T01:intron 50.0%
ATGTATGACAGGTGCCCAAC+TGG - Chr4:80347300-80347319 MsG0480023064.01.T01:CDS 50.0%
ATTCGTGTTCAGCTTGCGGT+GGG + Chr4:80343784-80343803 None:intergenic 50.0%
CACCCTGAACAACTCATCTC+CGG - Chr4:80345886-80345905 MsG0480023064.01.T01:intron 50.0%
CAGCTCTTTGCACCTTAGCA+AGG + Chr4:80347374-80347393 None:intergenic 50.0%
CGAGAGCAGCAAGATCTTCA+CGG + Chr4:80347535-80347554 None:intergenic 50.0%
CGCTGCTAACAATTCGCTAG+AGG - Chr4:80346158-80346177 MsG0480023064.01.T01:intron 50.0%
CGGATGAGTGCCAAAAGTGA+AGG + Chr4:80343899-80343918 None:intergenic 50.0%
CTGAGGGAGCAAAGATGATG+AGG - Chr4:80347579-80347598 MsG0480023064.01.T01:intron 50.0%
GAACATGGCATTCAGCCTGA+TGG - Chr4:80345615-80345634 MsG0480023064.01.T01:intron 50.0%
GAAGAGTTGTCGGTAGGTAC+CGG + Chr4:80345866-80345885 None:intergenic 50.0%
GAGAGCAGCAAGATCTTCAC+GGG + Chr4:80347534-80347553 None:intergenic 50.0%
GCAGAGAAGATCTCCTCTTG+AGG + Chr4:80343762-80343781 None:intergenic 50.0%
GCTAAGTGTGATCCAAGGCA+TGG - Chr4:80346886-80346905 MsG0480023064.01.T01:intron 50.0%
GGGAGCAAAGATGATGAGGA+AGG - Chr4:80347583-80347602 MsG0480023064.01.T01:intron 50.0%
GGGTTCGAGATCTACGAAGA+CGG + Chr4:80345821-80345840 None:intergenic 50.0%
GTTAGCAGCGTCTTCTTTGC+CGG + Chr4:80345908-80345927 None:intergenic 50.0%
GTTCAGGGTGGAAGAGTTGT+CGG + Chr4:80345876-80345895 None:intergenic 50.0%
TAACAACACTGCTGTTGCGG+AGG - Chr4:80347407-80347426 MsG0480023064.01.T01:CDS 50.0%
TCTTGAGCACACTGATGTGG+CGG - Chr4:80346675-80346694 MsG0480023064.01.T01:intron 50.0%
TGATGAGCAGCTATCTGTGC+CGG - Chr4:80346828-80346847 MsG0480023064.01.T01:intron 50.0%
TGCACATGTTAGCGTAGCGT+GGG + Chr4:80345346-80345365 None:intergenic 50.0%
TGCCGGAGATGAGTTGTTCA+GGG + Chr4:80345891-80345910 None:intergenic 50.0%
TTCGCTAGAGGACACTACAC+TGG - Chr4:80345931-80345950 MsG0480023064.01.T01:intron 50.0%
TTGCCGGAGATGAGTTGTTC+AGG + Chr4:80345892-80345911 None:intergenic 50.0%
! ACGAACTTCATCGATGACGG+TGG + Chr4:80345842-80345861 None:intergenic 50.0%
! CAGGTTGAAGAGTTGTCGGT+AGG + Chr4:80346113-80346132 None:intergenic 50.0%
! CCCAGCAAGAATTACCGACT+TGG + Chr4:80345581-80345600 None:intergenic 50.0%
! CGAACTTCATCGATGACGGT+GGG + Chr4:80345841-80345860 None:intergenic 50.0%
! GATACGGCACAAGATTGGTC+TGG + Chr4:80346752-80346771 None:intergenic 50.0%
! GCCCCTTCAAATCAGGCTTT+TGG - Chr4:80343965-80343984 MsG0480023064.01.T01:three_prime_UTR 50.0%
! GTGCCCAACTGGTTTCAATG+TGG - Chr4:80347311-80347330 MsG0480023064.01.T01:CDS 50.0%
! GTGGAAACCGGTTCAGGTTT+GGG - Chr4:80346372-80346391 MsG0480023064.01.T01:intron 50.0%
! TGCATCGTGTGCTACTCCAA+CGG + Chr4:80345749-80345768 None:intergenic 50.0%
! TGGCGGTGCTTTGGATAATG+AGG - Chr4:80346692-80346711 MsG0480023064.01.T01:intron 50.0%
! TGGTTTTCAACGCTGTTGGG+TGG - Chr4:80346350-80346369 MsG0480023064.01.T01:intron 50.0%
! TTTTCAACGCTGTTGGGTGG+TGG - Chr4:80346353-80346372 MsG0480023064.01.T01:intron 50.0%
!! GTTCCACGGTTTGTTGCTCT+TGG - Chr4:80343943-80343962 MsG0480023064.01.T01:three_prime_UTR 50.0%
AAACCGTGGAACCACCATGG+TGG + Chr4:80343935-80343954 None:intergenic 55.0%
AAGCCACCATGGTGGTTCCA+CGG - Chr4:80343929-80343948 MsG0480023064.01.T01:three_prime_UTR 55.0%
ACACTGATGTGGCGGTGCTT+TGG - Chr4:80346683-80346702 MsG0480023064.01.T01:intron 55.0%
ACCAGTGGACAAGGCTCTCT+TGG + Chr4:80347471-80347490 None:intergenic 55.0%
AGCCTCCTTCAGTTGTCCTG+CGG - Chr4:80347345-80347364 MsG0480023064.01.T01:CDS 55.0%
AGCCTGATGGCATGATGCCT+AGG - Chr4:80345628-80345647 MsG0480023064.01.T01:intron 55.0%
AGGGTGGAAGAGTTGTCGGT+AGG + Chr4:80345872-80345891 None:intergenic 55.0%
ATGCTAGGCTGGCACACCAA+AGG - Chr4:80345259-80345278 MsG0480023064.01.T01:intron 55.0%
ATGGTGGCTTCGGAGATGGA+CGG + Chr4:80343919-80343938 None:intergenic 55.0%
CACTAGCCAGCATATGGTGG+TGG - Chr4:80345195-80345214 MsG0480023064.01.T01:intron 55.0%
CCTTGTCCACTGGTAGGTGT+CGG - Chr4:80347477-80347496 MsG0480023064.01.T01:CDS 55.0%
CGGAGATGAGTTGTTCAGGG+TGG + Chr4:80345888-80345907 None:intergenic 55.0%
GCAAGATCTTCACGGGCTTC+TGG + Chr4:80347527-80347546 None:intergenic 55.0%
GCACATGTTAGCGTAGCGTG+GGG + Chr4:80345345-80345364 None:intergenic 55.0%
GCTCTTGGCCCCTTCAAATC+AGG - Chr4:80343958-80343977 MsG0480023064.01.T01:three_prime_UTR 55.0%
GGTCAAGCCGGAATCCAAGT+CGG - Chr4:80345564-80345583 MsG0480023064.01.T01:intron 55.0%
GTACCTGAGGGAAGGGTAGA+TGG + Chr4:80346458-80346477 None:intergenic 55.0%
GTGCACATGTTAGCGTAGCG+TGG + Chr4:80345347-80345366 None:intergenic 55.0%
TCACCATCTACCCTTCCCTC+AGG - Chr4:80346452-80346471 MsG0480023064.01.T01:intron 55.0%
TCTGTCCCACCACCATATGC+TGG + Chr4:80345204-80345223 None:intergenic 55.0%
TGCTAGGCTGGCACACCAAA+GGG - Chr4:80345260-80345279 MsG0480023064.01.T01:intron 55.0%
TGGAACCACCATGGTGGCTT+CGG + Chr4:80343929-80343948 None:intergenic 55.0%
! AGAGAGCCTTGTCCACTGGT+AGG - Chr4:80347471-80347490 MsG0480023064.01.T01:CDS 55.0%
! ATGGTGGAGACGACCTCAAG+AGG - Chr4:80343746-80343765 MsG0480023064.01.T01:three_prime_UTR 55.0%
! GGTGGAAACCGGTTCAGGTT+TGG - Chr4:80346371-80346390 MsG0480023064.01.T01:intron 55.0%
! TCCAAGAGAGCCTTGTCCAC+TGG - Chr4:80347467-80347486 MsG0480023064.01.T01:CDS 55.0%
! TCGGTGAGGGCATGGAAGAA+GGG - Chr4:80347496-80347515 MsG0480023064.01.T01:CDS 55.0%
! TTCTCATAGTTCGGTGGCGG+TGG + Chr4:80343839-80343858 None:intergenic 55.0%
!! GGCTTGCTGTTGATGTACCG+TGG - Chr4:80346917-80346936 MsG0480023064.01.T01:intron 55.0%
AGATCTACGAAGACGGCGCG+TGG + Chr4:80345814-80345833 None:intergenic 60.0%
CACCATGGTGGCTTCGGAGA+TGG + Chr4:80343923-80343942 None:intergenic 60.0%
CACCGCAGGACAACTGAAGG+AGG + Chr4:80347350-80347369 None:intergenic 60.0%
CACCTTAGCAAGGTCACCGC+AGG + Chr4:80347364-80347383 None:intergenic 60.0%
CATCTCCGAAGCCACCATGG+TGG - Chr4:80343921-80343940 MsG0480023064.01.T01:three_prime_UTR 60.0%
CCGACACCTACCAGTGGACA+AGG + Chr4:80347480-80347499 None:intergenic 60.0%
GAGAAGGGTCGATGCTAGGC+TGG - Chr4:80345248-80345267 MsG0480023064.01.T01:intron 60.0%
GGAGGTCGCGTCGTTGAAAG+AGG + Chr4:80343809-80343828 None:intergenic 60.0%
GGGCCAAGAGCAACAAACCG+TGG + Chr4:80343949-80343968 None:intergenic 60.0%
GGTCACCGCAGGACAACTGA+AGG + Chr4:80347353-80347372 None:intergenic 60.0%
GTCCATCTCCGAAGCCACCA+TGG - Chr4:80343918-80343937 MsG0480023064.01.T01:three_prime_UTR 60.0%
GTCCTGCGGTGACCTTGCTA+AGG - Chr4:80347359-80347378 MsG0480023064.01.T01:CDS 60.0%
GTTAGCGTAGCGTGGGGTGT+AGG + Chr4:80345339-80345358 None:intergenic 60.0%
TAGAATCCGGGTCGCATCGC+TGG + Chr4:80345287-80345306 None:intergenic 60.0%
! CGGTGAGGGCATGGAAGAAG+GGG - Chr4:80347497-80347516 MsG0480023064.01.T01:CDS 60.0%
! GTCGGTGAGGGCATGGAAGA+AGG - Chr4:80347495-80347514 MsG0480023064.01.T01:CDS 60.0%
!! CCACTGGTAGGTGTCGGTGA+GGG - Chr4:80347483-80347502 MsG0480023064.01.T01:CDS 60.0%
!! CGCTGTTGGGTGGTGGAAAC+CGG - Chr4:80346360-80346379 MsG0480023064.01.T01:intron 60.0%
!! TCCACTGGTAGGTGTCGGTG+AGG - Chr4:80347482-80347501 MsG0480023064.01.T01:CDS 60.0%
!! TGGGTGGTGGAAACCGGTTC+AGG - Chr4:80346366-80346385 MsG0480023064.01.T01:intron 60.0%
AAGGGTCCAGCGATGCGACC+CGG - Chr4:80345278-80345297 MsG0480023064.01.T01:intron 65.0%
CCCTCACCGACACCTACCAG+TGG + Chr4:80347486-80347505 None:intergenic 65.0%
GGTCGCATCGCTGGACCCTT+TGG + Chr4:80345278-80345297 None:intergenic 65.0%
! TAGTTCGGTGGCGGTGGCTC+AGG + Chr4:80343833-80343852 None:intergenic 65.0%
!! GGTAGGTGTCGGTGAGGGCA+TGG - Chr4:80347488-80347507 MsG0480023064.01.T01:CDS 65.0%
! TTCGGTGGCGGTGGCTCAGG+TGG + Chr4:80343830-80343849 None:intergenic 70.0%
! GGTGGCGGTGGCTCAGGTGG+AGG + Chr4:80343827-80343846 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr4 gene 80343746 80347859 80343746 ID=MsG0480023064.01;Name=MsG0480023064.01
Chr4 mRNA 80343746 80347859 80343746 ID=MsG0480023064.01.T01;Parent=MsG0480023064.01;Name=MsG0480023064.01.T01;_AED=0.52;_eAED=0.54;_QI=0|0|0.2|0.6|0.75|0.8|5|263|400
Chr4 exon 80343746 80344294 80343746 ID=MsG0480023064.01.T01:exon:32457;Parent=MsG0480023064.01.T01
Chr4 exon 80344667 80344784 80344667 ID=MsG0480023064.01.T01:exon:32456;Parent=MsG0480023064.01.T01
Chr4 exon 80345653 80345867 80345653 ID=MsG0480023064.01.T01:exon:32455;Parent=MsG0480023064.01.T01
Chr4 exon 80347185 80347571 80347185 ID=MsG0480023064.01.T01:exon:32454;Parent=MsG0480023064.01.T01
Chr4 exon 80347663 80347859 80347663 ID=MsG0480023064.01.T01:exon:32453;Parent=MsG0480023064.01.T01
Chr4 CDS 80347663 80347859 80347663 ID=MsG0480023064.01.T01:cds;Parent=MsG0480023064.01.T01
Chr4 CDS 80347185 80347571 80347185 ID=MsG0480023064.01.T01:cds;Parent=MsG0480023064.01.T01
Chr4 CDS 80345653 80345867 80345653 ID=MsG0480023064.01.T01:cds;Parent=MsG0480023064.01.T01
Chr4 CDS 80344667 80344784 80344667 ID=MsG0480023064.01.T01:cds;Parent=MsG0480023064.01.T01
Chr4 CDS 80344009 80344294 80344009 ID=MsG0480023064.01.T01:cds;Parent=MsG0480023064.01.T01
Chr4 three_prime_UTR 80343746 80344008 80343746 ID=MsG0480023064.01.T01:three_prime_utr;Parent=MsG0480023064.01.T01
Gene Sequence

>MsG0480023064.01.T01

ATGGTGGAGACGACCTCAAGAGGAGATCTTCTCTGCCCACCGCAAGCTGAACACGAATTTCCTCTTTCAACGACGCGACCTCCACCTGAGCCACCGCCACCGAACTATGAGAATCTTGAGAAAATTGATGCCTCCGTTAATGTTGCTACACCTTCACTTTTGGCACTCATCCGTCCATCTCCGAAGCCACCATGGTGGATGCACTATTGGTGTTTGTCAAAATGCCTCAAAAGGATTCTGTTTTTTTGGAACAAGTTAGTTGGTGTACCTTGGCAATCCATAGTGACTGAAAAAGCTTATGAGACTGACTCCCATCACAACAAACTCTCTAATCAGCAACCTACTTTCAAACATCCGATAAAATTGGACAATTTTGAGACCAATGATAGTCGAATTGTGCGAACACAAGTCAAAGAAATTATCTGTAACTGGATTGGGAAAAAGACTGTGGATTCTCATTCTTATATTGCCAAAGTACGGGTTCGTAAGAGATTGAATGAGCGGATGCTAGTTTGTTGTTCTTGGATTGGTTATGTTCTTTTGGCTTTTGAACAAGCTATGTGTATTGTCAACTATGTGTGTCTTGATTCTTCCGTTGGAGTAGCACACGATGCATTCAACACATTCTTCAGCGAAACTGGTTCAGGCAAACACGTTCCACGCGCCGTCTTCGTAGATCTCGAACCCACCGTCATCGATGAAGTTCGTTCCGGTACCTACCGACAACTCTTCCACCCTGAACAACTCATCTCCGGCAAAGAAGACGCTGCTAACAATTTCGCTAGAGGACACTACACTGGCTTATCTGATGAGCAGCTATCTGTGCCGGAAATTACCAATGCTGTTTTGAGCCTGCTAGTAGATGCTAAGTGTGATCCAAGGCATGGAAATATATGGCTTGCTGTTGATGTACCGTGGTGCCCAACTGGTTTCAATGTGGTATCAACTATCAGCCTCCTTCAGTTGTCCTGCGGTGACCTTGCTAAGGTGCAAAGAGCTGTGTGTATGATCAGTAACAACACTGCTGTTGCGGAGGTCTTCTCCCGCATTGATCACAAGTTCGATCTGATGTATCCAAGAGAGCCTTGTCCACTGGTAGGTGTCGGTGAGGGCATGGAAGAAGGGGAGTTCCAGAAGCCCGTGAAGATCTTGCTGCTCTCGAGAAAGATTATGAAGAAGTTGGTGCTGAGGGAGCAAAGATGA

Protein sequence

>MsG0480023064.01.T01

MVETTSRGDLLCPPQAEHEFPLSTTRPPPEPPPPNYENLEKIDASVNVATPSLLALIRPSPKPPWWMHYWCLSKCLKRILFFWNKLVGVPWQSIVTEKAYETDSHHNKLSNQQPTFKHPIKLDNFETNDSRIVRTQVKEIICNWIGKKTVDSHSYIAKVRVRKRLNERMLVCCSWIGYVLLAFEQAMCIVNYVCLDSSVGVAHDAFNTFFSETGSGKHVPRAVFVDLEPTVIDEVRSGTYRQLFHPEQLISGKEDAANNFARGHYTGLSDEQLSVPEITNAVLSLLVDAKCDPRHGNIWLAVDVPWCPTGFNVVSTISLLQLSCGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYPREPCPLVGVGEGMEEGEFQKPVKILLLSRKIMKKLVLREQR*