AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380016567.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016567.01.T01 MTR_3g092030 94.606 482 3 1 1 482 1 459 0.0 916
MsG0380016567.01.T01 MTR_3g092030 93.953 430 3 1 1 430 1 407 0.0 806
MsG0380016567.01.T01 MTR_3g092030 92.997 357 2 1 1 357 1 334 0.0 655
MsG0380016567.01.T01 MTR_5g016080 25.758 396 239 9 32 420 47 394 1.36e-28 118
MsG0380016567.01.T01 MTR_5g016080 25.266 376 226 9 32 400 47 374 4.30e-24 103
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016567.01.T01 AT4G27720 80.952 483 68 2 1 482 1 460 0.0 805
MsG0380016567.01.T01 AT3G49310 77.847 483 83 2 1 482 1 460 0.0 780
MsG0380016567.01.T01 AT1G64650 77.479 484 83 3 1 481 1 461 0.0 776
MsG0380016567.01.T01 AT1G64650 81.068 412 75 2 73 481 9 420 0.0 704
MsG0380016567.01.T01 AT2G23093 25.250 400 248 13 88 469 14 380 5.24e-19 89.4
MsG0380016567.01.T01 AT2G23093 25.250 400 248 13 88 469 81 447 9.50e-19 89.0

Find 131 sgRNAs with CRISPR-Local

Find 322 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCACCGCAGCACCCCTAAAT+TGG 0.113644 3:+85243222 None:intergenic
CGCCGGGTGCATTCAGCTTT+TGG 0.121891 3:-85242504 MsG0380016567.01.T01:CDS
CTTACTTATGTCAATTCTTT+TGG 0.125118 3:-85241082 MsG0380016567.01.T01:three_prime_UTR
CAACTCTTCATTGCTGGATT+TGG 0.156725 3:-85244811 MsG0380016567.01.T01:CDS
TACAAAATTAAGACAATTAA+AGG 0.164320 3:+85241016 None:intergenic
ACAGAGAAATGTTGTAAAAT+TGG 0.205061 3:+85245811 None:intergenic
TTCTCGAAGGCTATATTTCT+TGG 0.216269 3:-85243425 MsG0380016567.01.T01:CDS
CCCAAAACTTAATCAATTAC+AGG 0.219139 3:+85241342 None:intergenic
AGAGCTTGCTTGCCCAATTT+AGG 0.224575 3:-85243235 MsG0380016567.01.T01:CDS
ACCTGTAATTGATTAAGTTT+TGG 0.229731 3:-85241343 MsG0380016567.01.T01:exon
TTGAGGAGAAATCTCCATTT+TGG 0.255910 3:-85241113 MsG0380016567.01.T01:three_prime_UTR
AACTCTTCATTGCTGGATTT+GGG 0.263781 3:-85244810 MsG0380016567.01.T01:CDS
CTTGATGTTGGGCCGTATCT+TGG 0.280247 3:-85244569 MsG0380016567.01.T01:CDS
AAAGTTGTGTTGGCATATTC+TGG 0.280683 3:-85242466 MsG0380016567.01.T01:CDS
TCCAAACAGCCCAGAAAATA+TGG 0.295391 3:+85243388 None:intergenic
GAGCTTGCTTGCCCAATTTA+GGG 0.300525 3:-85243234 MsG0380016567.01.T01:CDS
TTCCCTATCACTGTTATGTT+TGG 0.303539 3:-85241991 MsG0380016567.01.T01:CDS
GCTGCGGTGGCCATTGCTTC+TGG 0.308302 3:-85243209 MsG0380016567.01.T01:intron
AGTAAGAACTACTACCAAAA+TGG 0.322831 3:+85241099 None:intergenic
GTGAAGGAGTTCAAGCTAAA+AGG 0.325343 3:-85241215 MsG0380016567.01.T01:three_prime_UTR
CTATACAGTACGTATGGATA+TGG 0.330750 3:-85244850 MsG0380016567.01.T01:CDS
CCACCACCTGTTGCTTTAGT+AGG 0.348043 3:+85242536 None:intergenic
TCTCTGTTAACTCGCGATAA+TGG 0.351173 3:-85245795 MsG0380016567.01.T01:exon
TTTGGGTCTTCGATGTTATT+CGG 0.354101 3:-85244793 MsG0380016567.01.T01:CDS
ATGCCAAACATAACAGTGAT+AGG 0.360971 3:+85241988 None:intergenic
CTTGTTGATACATTGGCTCT+TGG 0.361460 3:-85243359 MsG0380016567.01.T01:CDS
ATCGGACAACTCTTCATTGC+TGG 0.362820 3:-85244817 MsG0380016567.01.T01:CDS
AACTCCTTCACTTGGTTGGT+GGG 0.364271 3:+85241227 None:intergenic
AAGGCTATATTTCTTGGAAA+TGG 0.366820 3:-85243419 MsG0380016567.01.T01:CDS
CTCGCTTGCATCTAAGTTGA+TGG 0.381655 3:-85242756 MsG0380016567.01.T01:CDS
TTGAGATCTCATCTTCATAA+TGG 0.384178 3:+85242439 None:intergenic
TTCTCCTCAAGTAAAATAAT+AGG 0.387414 3:+85241126 None:intergenic
ACACACTCTGCAAGAGAGAC+TGG 0.389907 3:-85245842 MsG0380016567.01.T01:five_prime_UTR
GGATCTAAGTTTGTCTCGTT+GGG 0.396886 3:-85241053 MsG0380016567.01.T01:three_prime_UTR
CTCATTTATTCTCTCATGAT+GGG 0.397970 3:-85245647 MsG0380016567.01.T01:CDS
TCTCATTTATTCTCTCATGA+TGG 0.399753 3:-85245648 MsG0380016567.01.T01:CDS
AAAGTTCATGATGGTGCTCC+TGG 0.400456 3:+85242400 None:intergenic
AAGTCACACAAGCTCTCTTC+CGG 0.400505 3:+85244647 None:intergenic
CACCGCAGCACCCCTAAATT+GGG 0.400707 3:+85243223 None:intergenic
GCCATACAGTCTCTCTTTGA+AGG 0.407686 3:-85242890 MsG0380016567.01.T01:CDS
ATTCATGTTATCTTCAATGT+TGG 0.410052 3:-85242783 MsG0380016567.01.T01:CDS
TGTATACCTTTGTGTTCCTA+TGG 0.414069 3:-85242862 MsG0380016567.01.T01:CDS
ATGTTATTCGGAACAATTGT+GGG 0.415436 3:-85244781 MsG0380016567.01.T01:CDS
GAGAGAGAGAAGGGTGAAGA+AGG 0.417967 3:+85245925 None:intergenic
TTGTTCTTCTACCTTGTCTT+CGG 0.421408 3:-85245770 MsG0380016567.01.T01:CDS
TTCATGTTATCTTCAATGTT+GGG 0.421818 3:-85242782 MsG0380016567.01.T01:CDS
GAACTCCTTCACTTGGTTGG+TGG 0.422041 3:+85241226 None:intergenic
GACAGAAACTGCATTATGTA+AGG 0.422323 3:+85241294 None:intergenic
GCAGTTCCTACTAAAGCAAC+AGG 0.424570 3:-85242542 MsG0380016567.01.T01:CDS
TTAATCAATTACAGGTTCAA+TGG 0.426072 3:+85241350 None:intergenic
CATATCCATACGTACTGTAT+AGG 0.434125 3:+85244851 None:intergenic
TGAAAACAGAAACAGAAGAT+TGG 0.434785 3:-85241403 MsG0380016567.01.T01:intron
CTTGAACTCCTTCACTTGGT+TGG 0.437650 3:+85241223 None:intergenic
GAGAAGATAATTGTTCTTGA+AGG 0.443920 3:+85245667 None:intergenic
TCTACATGGACAGAAAACTA+TGG 0.449195 3:-85243275 MsG0380016567.01.T01:CDS
AAACCTGCAGCAGCGTCAAA+GGG 0.457365 3:+85243326 None:intergenic
GGGATCTAAGTTTGTCTCGT+TGG 0.458723 3:-85241054 MsG0380016567.01.T01:three_prime_UTR
ATGGTGCTCCTGGCTTCCTC+AGG 0.461583 3:+85242410 None:intergenic
AGTACGTATGGATATGGAAA+AGG 0.464152 3:-85244844 MsG0380016567.01.T01:CDS
GTATGGCTATAGCTGGTGAT+TGG 0.466459 3:-85244897 MsG0380016567.01.T01:CDS
CTGTATAGGTAGTAAACATA+TGG 0.466801 3:+85244865 None:intergenic
TTTGAGTGTGAAGGTAAATC+TGG 0.466842 3:-85241252 MsG0380016567.01.T01:three_prime_UTR
TCATCATTTGGGCTTAATGC+AGG 0.467424 3:+85242836 None:intergenic
GTACGTATGGATATGGAAAA+GGG 0.469222 3:-85244843 MsG0380016567.01.T01:CDS
GAAATGTTGTAAAATTGGAT+TGG 0.471122 3:+85245816 None:intergenic
ACAAAATTAAGACAATTAAA+GGG 0.472104 3:+85241017 None:intergenic
GGTGATGCAGCTTGCAATGT+AGG 0.472241 3:+85244615 None:intergenic
TTGATGTTGGGCCGTATCTT+GGG 0.472991 3:-85244568 MsG0380016567.01.T01:CDS
TTCTTCTACCTTGTCTTCGG+TGG 0.475762 3:-85245767 MsG0380016567.01.T01:CDS
GCTAGTTGCTGAGCATTTCA+AGG 0.477810 3:-85244503 MsG0380016567.01.T01:intron
AAAACCTGCAGCAGCGTCAA+AGG 0.480550 3:+85243325 None:intergenic
CAATACAGAGTCTTGATGTT+GGG 0.480967 3:-85244580 MsG0380016567.01.T01:CDS
GTTCAAGCTAAAAGGATATG+TGG 0.483906 3:-85241207 MsG0380016567.01.T01:three_prime_UTR
GGTGGTGGTCTCTCATTCGC+CGG 0.485040 3:-85242521 MsG0380016567.01.T01:CDS
GGGTGAAGAAGGTTATATAG+TGG 0.489029 3:+85245936 None:intergenic
CCAATTTAGGGGTGCTGCGG+TGG 0.489380 3:-85243222 MsG0380016567.01.T01:CDS
ATAGCATACAGTGGTAAGAA+TGG 0.492139 3:+85242661 None:intergenic
AATACATTCCTGAGGAAGCC+AGG 0.496275 3:-85242418 MsG0380016567.01.T01:CDS
TAGCATACAGTGGTAAGAAT+GGG 0.504293 3:+85242662 None:intergenic
TTAGCTTGAACTCCTTCACT+TGG 0.505499 3:+85241219 None:intergenic
GCCCAAAAGCTGAATGCACC+CGG 0.511636 3:+85242502 None:intergenic
AAGGCGACTGCTCGTGATTG+CGG 0.515226 3:-85241929 MsG0380016567.01.T01:CDS
ACCTTCAAAGAGAGACTGTA+TGG 0.515882 3:+85242889 None:intergenic
TTTGTAAGATTTGTGTGAGA+TGG 0.521279 3:+85245864 None:intergenic
GTGGTGGTCTCTCATTCGCC+GGG 0.524709 3:-85242520 MsG0380016567.01.T01:CDS
TCAATACAGAGTCTTGATGT+TGG 0.527647 3:-85244581 MsG0380016567.01.T01:CDS
AAATGTCCTTGTTGATACAT+TGG 0.532054 3:-85243366 MsG0380016567.01.T01:CDS
TACATTGGCTCTTGGACCAG+TGG 0.533547 3:-85243351 MsG0380016567.01.T01:CDS
ATAGCTGGTGATTGGTTACA+AGG 0.536193 3:-85244889 MsG0380016567.01.T01:CDS
AACAGAAGATTGGCAACTCA+AGG 0.548096 3:-85241393 MsG0380016567.01.T01:CDS
CCTACTAAAGCAACAGGTGG+TGG 0.548441 3:-85242536 MsG0380016567.01.T01:CDS
TGGCAATGCCACCCAAGATA+CGG 0.550294 3:+85244557 None:intergenic
TACTACCTATACAGTACGTA+TGG 0.551044 3:-85244856 MsG0380016567.01.T01:CDS
AGATTGGCAACTCAAGGAAA+GGG 0.555844 3:-85241387 MsG0380016567.01.T01:CDS
GGATATGGAAAAGGGGAGAT+CGG 0.557120 3:-85244835 MsG0380016567.01.T01:CDS
GGCTTAATGCAGGAGTCCAT+AGG 0.558342 3:+85242846 None:intergenic
AAGATTGGCAACTCAAGGAA+AGG 0.560058 3:-85241388 MsG0380016567.01.T01:CDS
CAGGTTCAATGGCTCTGACT+CGG 0.560976 3:+85241361 None:intergenic
TTCAAGCTAAAAGGATATGT+GGG 0.564130 3:-85241206 MsG0380016567.01.T01:three_prime_UTR
TGATCGTGATATTATCTACA+TGG 0.566672 3:-85243289 MsG0380016567.01.T01:CDS
GATCTCATCTTCATAATGGA+TGG 0.570928 3:+85242443 None:intergenic
TGCCAAACATAACAGTGATA+GGG 0.571327 3:+85241989 None:intergenic
GTAAGATACTAGCCATGAAG+AGG 0.572565 3:+85241953 None:intergenic
CACACTCTGCAAGAGAGACT+GGG 0.572731 3:-85245841 MsG0380016567.01.T01:five_prime_UTR
TGCATTAATTAAATGTAGAG+TGG 0.572950 3:+85240980 None:intergenic
TGCCGAAAATAGAAGTGAAG+TGG 0.574265 3:+85244537 None:intergenic
GATGTTATTCGGAACAATTG+TGG 0.575416 3:-85244782 MsG0380016567.01.T01:CDS
CGGCTAATCCACCGAAGACA+AGG 0.577466 3:+85245759 None:intergenic
AACATCAAGACTCTGTATTG+AGG 0.584283 3:+85244583 None:intergenic
AGCTTGCTTGCCCAATTTAG+GGG 0.587066 3:-85243233 MsG0380016567.01.T01:CDS
TTCATACCACTCTTGTCTCG+TGG 0.588382 3:-85245889 MsG0380016567.01.T01:five_prime_UTR
ACCTGCAGCAGCGTCAAAGG+GGG 0.590199 3:+85243328 None:intergenic
AAGAACTATACCAGAAGCAA+TGG 0.596618 3:+85243199 None:intergenic
TCTGTATTGAGGAGAATGCT+TGG 0.601257 3:+85244594 None:intergenic
GCTATCATTAACATTCTCGA+AGG 0.610234 3:-85243438 MsG0380016567.01.T01:CDS
AGAGGGGCTTTGATCAGCAA+TGG 0.613910 3:-85243460 MsG0380016567.01.T01:CDS
TGCCCAATTTAGGGGTGCTG+CGG 0.615185 3:-85243225 MsG0380016567.01.T01:CDS
GGTGCCCACCAACCAAGTGA+AGG 0.638815 3:-85241231 MsG0380016567.01.T01:three_prime_UTR
AACCTGCAGCAGCGTCAAAG+GGG 0.643247 3:+85243327 None:intergenic
GGCTCGTTCATCATTCCGTG+TGG 0.650417 3:-85242735 MsG0380016567.01.T01:CDS
TACGTATGGATATGGAAAAG+GGG 0.653213 3:-85244842 MsG0380016567.01.T01:CDS
ACTACGCAATTTGAGTGTGA+AGG 0.660789 3:-85241261 MsG0380016567.01.T01:three_prime_UTR
CAAGAGCCAATGTATCAACA+AGG 0.662983 3:+85243360 None:intergenic
ATGTTGGGCCGTATCTTGGG+TGG 0.669526 3:-85244565 MsG0380016567.01.T01:CDS
TCATGGCTAGTATCTTACAA+AGG 0.673331 3:-85241948 MsG0380016567.01.T01:CDS
ATGGTACCACGAGACAAGAG+TGG 0.686881 3:+85245883 None:intergenic
CTCGAGAACAGCAACAACAG+CGG 0.691907 3:+85245739 None:intergenic
GAGATCTCAATACATTCCTG+AGG 0.692563 3:-85242426 MsG0380016567.01.T01:CDS
GTTCCTACTAAAGCAACAGG+TGG 0.707303 3:-85242539 MsG0380016567.01.T01:CDS
AGGAGTCCATAGGAACACAA+AGG 0.732126 3:+85242856 None:intergenic
TCTGCATGTAGCTCTCCACA+CGG 0.735568 3:+85242720 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAATTATTATTATTACTAAA+AGG - Chr3:85241419-85241438 MsG0380016567.01.T01:intron 10.0%
!! TATATGATTAACATATTTAA+AGG + Chr3:85242540-85242559 None:intergenic 10.0%
!!! TTTTTGTTTTATATGAAAAT+GGG + Chr3:85245448-85245467 None:intergenic 10.0%
!!! TTTTTTGTTTTATATGAAAA+TGG + Chr3:85245449-85245468 None:intergenic 10.0%
!!! TTTTTTTTTGAAATTGAATT+TGG - Chr3:85241463-85241482 MsG0380016567.01.T01:intron 10.0%
!! AAATTTAGTAACTATTAACT+AGG - Chr3:85242835-85242854 MsG0380016567.01.T01:CDS 15.0%
!! AATATGTTAATCATATATGA+AGG - Chr3:85242543-85242562 MsG0380016567.01.T01:CDS 15.0%
!! ACAAAATTAAGACAATTAAA+GGG + Chr3:85245893-85245912 None:intergenic 15.0%
!! ACTATTATATAAGACATTTA+CGG + Chr3:85242569-85242588 None:intergenic 15.0%
!! ATCAAATCAACTATATTTAA+AGG + Chr3:85241830-85241849 None:intergenic 15.0%
!! TAAAAAATGATAACAGAATA+AGG + Chr3:85243898-85243917 None:intergenic 15.0%
!! TACAAAATTAAGACAATTAA+AGG + Chr3:85245894-85245913 None:intergenic 15.0%
!! TATTCAAATTTGAATAATGT+TGG - Chr3:85241752-85241771 MsG0380016567.01.T01:intron 15.0%
!!! TTGTTTATTTTTTTATGTAC+AGG - Chr3:85244885-85244904 MsG0380016567.01.T01:CDS 15.0%
!! AAAACAAAAAAGAAACTTCT+TGG - Chr3:85245458-85245477 MsG0380016567.01.T01:intron 20.0%
!! AAATTTGAATAATGTTGGAT+GGG - Chr3:85241757-85241776 MsG0380016567.01.T01:intron 20.0%
!! AAGAAATAATAAACAGAAGA+TGG + Chr3:85241380-85241399 None:intergenic 20.0%
!! AAGTACAAAATGTAAAATGA+AGG + Chr3:85243395-85243414 None:intergenic 20.0%
!! AATTAGTGCAATATAAAAGT+TGG + Chr3:85244676-85244695 None:intergenic 20.0%
!! ATTACTATGAATTTGAACTT+TGG - Chr3:85243768-85243787 MsG0380016567.01.T01:intron 20.0%
!! GTTTGTAAAGAAAATGTATT+TGG + Chr3:85245418-85245437 None:intergenic 20.0%
!! TTATGTAAATATCAACTATG+TGG - Chr3:85242879-85242898 MsG0380016567.01.T01:CDS 20.0%
!! TTCATTTAACGAAACAATTA+AGG - Chr3:85243023-85243042 MsG0380016567.01.T01:intron 20.0%
!!! ACAACTACAAATTTTGAAAA+TGG - Chr3:85242770-85242789 MsG0380016567.01.T01:CDS 20.0%
!!! CTTTATTATCAAGTTTTATC+TGG - Chr3:85242461-85242480 MsG0380016567.01.T01:CDS 20.0%
!!! TTACTTATGTCAATTCTTTT+GGG - Chr3:85245826-85245845 MsG0380016567.01.T01:five_prime_UTR 20.0%
!!! TTAGTTTTAGTGATCTTAAT+AGG - Chr3:85241977-85241996 MsG0380016567.01.T01:CDS 20.0%
!!! TTTTATGATTTTCTTAGCTT+TGG - Chr3:85241554-85241573 MsG0380016567.01.T01:intron 20.0%
! AACAATGACAAAACTATCTA+AGG + Chr3:85243735-85243754 None:intergenic 25.0%
! ACAGAGAAATGTTGTAAAAT+TGG + Chr3:85241099-85241118 None:intergenic 25.0%
! ACTTCTTAATATGAAATCAG+GGG - Chr3:85242237-85242256 MsG0380016567.01.T01:intron 25.0%
! AGACTTCTTAATATGAAATC+AGG - Chr3:85242235-85242254 MsG0380016567.01.T01:intron 25.0%
! ATGTTGCAAAAATAAAACCA+TGG + Chr3:85244106-85244125 None:intergenic 25.0%
! ATTCATGTTATCTTCAATGT+TGG - Chr3:85244124-85244143 MsG0380016567.01.T01:intron 25.0%
! CAAATTTGAATAATGTTGGA+TGG - Chr3:85241756-85241775 MsG0380016567.01.T01:intron 25.0%
! GAAATGTTGTAAAATTGGAT+TGG + Chr3:85241094-85241113 None:intergenic 25.0%
! GACTTCTTAATATGAAATCA+GGG - Chr3:85242236-85242255 MsG0380016567.01.T01:intron 25.0%
! TAAGGGTAAAAATTGTATTG+TGG + Chr3:85243331-85243350 None:intergenic 25.0%
! TCCCGGAAAAAATAAAATAA+TGG + Chr3:85243837-85243856 None:intergenic 25.0%
! TGAAAACGATGTAATTGAAA+TGG - Chr3:85241488-85241507 MsG0380016567.01.T01:intron 25.0%
! TGCATTAATTAAATGTAGAG+TGG + Chr3:85245930-85245949 None:intergenic 25.0%
! TGTTGCAAAAATAAAACCAT+GGG + Chr3:85244105-85244124 None:intergenic 25.0%
! TTAATCAATTACAGGTTCAA+TGG + Chr3:85245560-85245579 None:intergenic 25.0%
! TTCATGTTATCTTCAATGTT+GGG - Chr3:85244125-85244144 MsG0380016567.01.T01:intron 25.0%
! TTCTCCTCAAGTAAAATAAT+AGG + Chr3:85245784-85245803 None:intergenic 25.0%
! TTGCAAAAAGCAAAAGATAT+AGG - Chr3:85244782-85244801 MsG0380016567.01.T01:CDS 25.0%
!! ACCTGTAATTGATTAAGTTT+TGG - Chr3:85245564-85245583 MsG0380016567.01.T01:intron 25.0%
!! ATAATTTGACTTTGTTACTG+TGG - Chr3:85244331-85244350 MsG0380016567.01.T01:intron 25.0%
!! CCTGTAATTGATTAAGTTTT+GGG - Chr3:85245565-85245584 MsG0380016567.01.T01:intron 25.0%
!! CTTACTTATGTCAATTCTTT+TGG - Chr3:85245825-85245844 MsG0380016567.01.T01:five_prime_UTR 25.0%
!! TACTTATGTCAATTCTTTTG+GGG - Chr3:85245827-85245846 MsG0380016567.01.T01:five_prime_UTR 25.0%
!! TGGTTTTCATATCCAATTTA+GGG - Chr3:85243101-85243120 MsG0380016567.01.T01:intron 25.0%
!! TTTTGTCATTGTTTATACAG+TGG - Chr3:85243742-85243761 MsG0380016567.01.T01:intron 25.0%
!!! ATAGTAGTGATGTGTTTTTT+TGG - Chr3:85241586-85241605 MsG0380016567.01.T01:intron 25.0%
!!! ATATCTTCATTGCTTGTTTT+TGG - Chr3:85243081-85243100 MsG0380016567.01.T01:intron 25.0%
!!! ATTGCCTATTATTTTACTTG+AGG - Chr3:85245777-85245796 MsG0380016567.01.T01:CDS 25.0%
!!! GCCATTATTTTATTTTTTCC+GGG - Chr3:85243833-85243852 MsG0380016567.01.T01:intron 25.0%
!!! GGCCATTATTTTATTTTTTC+CGG - Chr3:85243832-85243851 MsG0380016567.01.T01:intron 25.0%
!!! TAATAGGTTTCGTTTTTGTA+TGG - Chr3:85241993-85242012 MsG0380016567.01.T01:CDS 25.0%
!!! TAATTGATTAAGTTTTGGGA+AGG - Chr3:85245569-85245588 MsG0380016567.01.T01:intron 25.0%
!!! TACTCTTTTTCTTTGCTTTT+TGG - Chr3:85241629-85241648 MsG0380016567.01.T01:intron 25.0%
!!! TCAAAAGCATTATATCTAAG+CGG + Chr3:85244595-85244614 None:intergenic 25.0%
!!! TTATATAGTGGTTTTGTGAT+GGG + Chr3:85240962-85240981 None:intergenic 25.0%
!!! TTGGTTTTCATATCCAATTT+AGG - Chr3:85243100-85243119 MsG0380016567.01.T01:intron 25.0%
!!! TTTGAAAATGGTTTTAGATG+TGG - Chr3:85242782-85242801 MsG0380016567.01.T01:CDS 25.0%
AAAATGCTACGACATATGTA+TGG + Chr3:85242205-85242224 None:intergenic 30.0%
AAAGCAGAAGAAACAACTAA+TGG + Chr3:85243128-85243147 None:intergenic 30.0%
AAATGTCCTTGTTGATACAT+TGG - Chr3:85243541-85243560 MsG0380016567.01.T01:intron 30.0%
AAGAAAGGGTTTATAATTCC+AGG + Chr3:85244703-85244722 None:intergenic 30.0%
AAGGCTATATTTCTTGGAAA+TGG - Chr3:85243488-85243507 MsG0380016567.01.T01:intron 30.0%
AATTCATGAACATCTGTACT+AGG + Chr3:85243949-85243968 None:intergenic 30.0%
AGATGTGGATCATTATGTTT+AGG - Chr3:85242797-85242816 MsG0380016567.01.T01:CDS 30.0%
AGGCAGGATATATAACATAA+GGG + Chr3:85245185-85245204 None:intergenic 30.0%
AGTAAGAACTACTACCAAAA+TGG + Chr3:85245811-85245830 None:intergenic 30.0%
ATATTGCACTAATTTGAACC+TGG - Chr3:85244682-85244701 MsG0380016567.01.T01:intron 30.0%
ATGTAAATCACAGTACCAAT+GGG + Chr3:85244295-85244314 None:intergenic 30.0%
ATGTTATTCGGAACAATTGT+GGG - Chr3:85242126-85242145 MsG0380016567.01.T01:intron 30.0%
CAGACATCGTATTTAAGAAA+GGG + Chr3:85244717-85244736 None:intergenic 30.0%
CCCAAAACTTAATCAATTAC+AGG + Chr3:85245568-85245587 None:intergenic 30.0%
CTCATTTATTCTCTCATGAT+GGG - Chr3:85241260-85241279 MsG0380016567.01.T01:three_prime_UTR 30.0%
CTGTATAGGTAGTAAACATA+TGG + Chr3:85242045-85242064 None:intergenic 30.0%
CTTTCTTAAATACGATGTCT+GGG - Chr3:85244716-85244735 MsG0380016567.01.T01:intron 30.0%
GAGAAGATAATTGTTCTTGA+AGG + Chr3:85241243-85241262 None:intergenic 30.0%
GAGTAAAAATCACAACTTCA+AGG + Chr3:85241614-85241633 None:intergenic 30.0%
GTAGAATTCAACAAGATAAC+TGG + Chr3:85244746-85244765 None:intergenic 30.0%
GTTGATATGCCAGATAATAT+AGG + Chr3:85245356-85245375 None:intergenic 30.0%
GTTGCAAAAATAAAACCATG+GGG + Chr3:85244104-85244123 None:intergenic 30.0%
TACCCTTAAAATCTGACAAA+GGG - Chr3:85243343-85243362 MsG0380016567.01.T01:CDS 30.0%
TAGTTATTATAAGTACCACG+AGG - Chr3:85242588-85242607 MsG0380016567.01.T01:intron 30.0%
TATGATTACTTTATACACGC+AGG - Chr3:85242485-85242504 MsG0380016567.01.T01:CDS 30.0%
TCTCATTTATTCTCTCATGA+TGG - Chr3:85241259-85241278 MsG0380016567.01.T01:three_prime_UTR 30.0%
TGAAAACAGAAACAGAAGAT+TGG - Chr3:85245504-85245523 MsG0380016567.01.T01:intron 30.0%
TGATCGTGATATTATCTACA+TGG - Chr3:85243618-85243637 MsG0380016567.01.T01:intron 30.0%
TTACCCTTAAAATCTGACAA+AGG - Chr3:85243342-85243361 MsG0380016567.01.T01:CDS 30.0%
TTCAAGCTAAAAGGATATGT+GGG - Chr3:85245701-85245720 MsG0380016567.01.T01:CDS 30.0%
TTGAGATCTCATCTTCATAA+TGG + Chr3:85244471-85244490 None:intergenic 30.0%
TTGCAAAAATAAAACCATGG+GGG + Chr3:85244103-85244122 None:intergenic 30.0%
TTTGTAAGATTTGTGTGAGA+TGG + Chr3:85241046-85241065 None:intergenic 30.0%
! AAACCCTTTGTCAGATTTTA+AGG + Chr3:85243349-85243368 None:intergenic 30.0%
! AACCCTTTGTCAGATTTTAA+GGG + Chr3:85243348-85243367 None:intergenic 30.0%
! ACTTATGTCAATTCTTTTGG+GGG - Chr3:85245828-85245847 MsG0380016567.01.T01:five_prime_UTR 30.0%
! ATTTTACAATATCCTCCAAG+TGG - Chr3:85243283-85243302 MsG0380016567.01.T01:CDS 30.0%
! GATGAAAAAATAGCTTTGCT+TGG - Chr3:85243993-85244012 MsG0380016567.01.T01:intron 30.0%
! GCATGTTTATCTTGTTTAGA+GGG + Chr3:85243263-85243282 None:intergenic 30.0%
! TAGATTGTTTAAGATCAAGC+TGG + Chr3:85244652-85244671 None:intergenic 30.0%
! TGCATGTTTATCTTGTTTAG+AGG + Chr3:85243264-85243283 None:intergenic 30.0%
!! AATAAGTTTTGATCCCATTG+CGG + Chr3:85245057-85245076 None:intergenic 30.0%
!! TCCAAAAGATGTTGATTTCT+GGG - Chr3:85243218-85243237 MsG0380016567.01.T01:CDS 30.0%
!! TGTACTTTTGAAAGTTGTGT+TGG - Chr3:85244431-85244450 MsG0380016567.01.T01:intron 30.0%
!! TTCCAAAAGATGTTGATTTC+TGG - Chr3:85243217-85243236 MsG0380016567.01.T01:CDS 30.0%
!!! CTTTTGCTTTTTGCAAGAAA+GGG + Chr3:85244778-85244797 None:intergenic 30.0%
!!! GTTATATAGTGGTTTTGTGA+TGG + Chr3:85240963-85240982 None:intergenic 30.0%
!!! TCTTTTGCTTTTTGCAAGAA+AGG + Chr3:85244779-85244798 None:intergenic 30.0%
!!! TTTTGCTTTTTGCAAGAAAG+GGG + Chr3:85244777-85244796 None:intergenic 30.0%
AAATGAAGGAATCAAGACGA+AGG + Chr3:85243381-85243400 None:intergenic 35.0%
AACATCAAGACTCTGTATTG+AGG + Chr3:85242327-85242346 None:intergenic 35.0%
AACTCTTCATTGCTGGATTT+GGG - Chr3:85242097-85242116 MsG0380016567.01.T01:intron 35.0%
AAGAACTATACCAGAAGCAA+TGG + Chr3:85243711-85243730 None:intergenic 35.0%
AAGCATTATATCTAAGCGGT+AGG + Chr3:85244591-85244610 None:intergenic 35.0%
AATGCGGAAAAAGTTCATGA+TGG + Chr3:85244519-85244538 None:intergenic 35.0%
ACAAACACACTAGTTGCTAT+CGG - Chr3:85242966-85242985 MsG0380016567.01.T01:intron 35.0%
ACACACACAAAAATGTTCAG+AGG + Chr3:85244542-85244561 None:intergenic 35.0%
ACTAAATTTATGCAACACGC+AGG + Chr3:85242824-85242843 None:intergenic 35.0%
AGATATAGGCTCTCTTTATC+TGG - Chr3:85244796-85244815 MsG0380016567.01.T01:CDS 35.0%
AGTACGTATGGATATGGAAA+AGG - Chr3:85242063-85242082 MsG0380016567.01.T01:intron 35.0%
ATAGCATACAGTGGTAAGAA+TGG + Chr3:85244249-85244268 None:intergenic 35.0%
ATATCAACTATGTGGTGTAG+TGG - Chr3:85242887-85242906 MsG0380016567.01.T01:CDS 35.0%
ATATGCCAGATAATATAGGC+AGG + Chr3:85245352-85245371 None:intergenic 35.0%
ATGCCAAACATAACAGTGAT+AGG + Chr3:85244922-85244941 None:intergenic 35.0%
ATGTTGAATTTGTACCGCAA+TGG - Chr3:85245040-85245059 MsG0380016567.01.T01:intron 35.0%
ATTGCCCACTTTGGTTAATT+GGG - Chr3:85245266-85245285 MsG0380016567.01.T01:intron 35.0%
ATTGGAAGAATAGCATACAG+TGG + Chr3:85244258-85244277 None:intergenic 35.0%
ATTTCAACATACATCACTCC+CGG + Chr3:85243854-85243873 None:intergenic 35.0%
CAAAAATGTTCAGAGGAATG+CGG + Chr3:85244535-85244554 None:intergenic 35.0%
CAATACAGAGTCTTGATGTT+GGG - Chr3:85242327-85242346 MsG0380016567.01.T01:intron 35.0%
CATATCCATACGTACTGTAT+AGG + Chr3:85242059-85242078 None:intergenic 35.0%
CATTAATCTACCTAACGAGT+GGG - Chr3:85243807-85243826 MsG0380016567.01.T01:intron 35.0%
CCAGACATCGTATTTAAGAA+AGG + Chr3:85244718-85244737 None:intergenic 35.0%
CCTTTCTTAAATACGATGTC+TGG - Chr3:85244715-85244734 MsG0380016567.01.T01:intron 35.0%
CTATACAGTACGTATGGATA+TGG - Chr3:85242057-85242076 MsG0380016567.01.T01:intron 35.0%
GACAGAAACTGCATTATGTA+AGG + Chr3:85245616-85245635 None:intergenic 35.0%
GAGGCAGGATATATAACATA+AGG + Chr3:85245186-85245205 None:intergenic 35.0%
GATCTACCAAAAATAGCTTG+AGG + Chr3:85245205-85245224 None:intergenic 35.0%
GATGTAAATCACAGTACCAA+TGG + Chr3:85244296-85244315 None:intergenic 35.0%
GATGTTATTCGGAACAATTG+TGG - Chr3:85242125-85242144 MsG0380016567.01.T01:intron 35.0%
GCCTTTAAGTAAAAGTCCAT+GGG - Chr3:85245301-85245320 MsG0380016567.01.T01:intron 35.0%
GCTATCATTAACATTCTCGA+AGG - Chr3:85243469-85243488 MsG0380016567.01.T01:intron 35.0%
GTACGTATGGATATGGAAAA+GGG - Chr3:85242064-85242083 MsG0380016567.01.T01:intron 35.0%
GTGAGCAAAAATCACTTTGT+TGG + Chr3:85243309-85243328 None:intergenic 35.0%
GTTCAAGCTAAAAGGATATG+TGG - Chr3:85245700-85245719 MsG0380016567.01.T01:CDS 35.0%
TAACGAAACAATTAAGGCAG+AGG - Chr3:85243029-85243048 MsG0380016567.01.T01:intron 35.0%
TACGTATGGATATGGAAAAG+GGG - Chr3:85242065-85242084 MsG0380016567.01.T01:intron 35.0%
TACTACCTATACAGTACGTA+TGG - Chr3:85242051-85242070 MsG0380016567.01.T01:intron 35.0%
TAGCATACAGTGGTAAGAAT+GGG + Chr3:85244248-85244267 None:intergenic 35.0%
TATACACTACACAAAGCCAA+AGG + Chr3:85245160-85245179 None:intergenic 35.0%
TATGCCAGATAATATAGGCA+GGG + Chr3:85245351-85245370 None:intergenic 35.0%
TCAATACAGAGTCTTGATGT+TGG - Chr3:85242326-85242345 MsG0380016567.01.T01:intron 35.0%
TCATGGCTAGTATCTTACAA+AGG - Chr3:85244959-85244978 MsG0380016567.01.T01:intron 35.0%
TCTACATGGACAGAAAACTA+TGG - Chr3:85243632-85243651 MsG0380016567.01.T01:intron 35.0%
TGCCAAACATAACAGTGATA+GGG + Chr3:85244921-85244940 None:intergenic 35.0%
TGCCTTTAAGTAAAAGTCCA+TGG - Chr3:85245300-85245319 MsG0380016567.01.T01:intron 35.0%
TGTATACCTTTGTGTTCCTA+TGG - Chr3:85244045-85244064 MsG0380016567.01.T01:intron 35.0%
TGTTGAATTTGTACCGCAAT+GGG - Chr3:85245041-85245060 MsG0380016567.01.T01:intron 35.0%
TTATCTGGCATATCAACACA+TGG - Chr3:85245359-85245378 MsG0380016567.01.T01:intron 35.0%
TTCCACATGAATCTATCAGA+GGG - Chr3:85243430-85243449 MsG0380016567.01.T01:CDS 35.0%
TTCCCTATCACTGTTATGTT+TGG - Chr3:85244916-85244935 MsG0380016567.01.T01:CDS 35.0%
TTCTCGAAGGCTATATTTCT+TGG - Chr3:85243482-85243501 MsG0380016567.01.T01:intron 35.0%
TTGTTCTTCTACCTTGTCTT+CGG - Chr3:85241137-85241156 MsG0380016567.01.T01:three_prime_UTR 35.0%
TTTCCACATGAATCTATCAG+AGG - Chr3:85243429-85243448 MsG0380016567.01.T01:CDS 35.0%
TTTGAGTGTGAAGGTAAATC+TGG - Chr3:85245655-85245674 MsG0380016567.01.T01:CDS 35.0%
TTTGGGTCTTCGATGTTATT+CGG - Chr3:85242114-85242133 MsG0380016567.01.T01:intron 35.0%
! AAAGTTGTGTTGGCATATTC+TGG - Chr3:85244441-85244460 MsG0380016567.01.T01:intron 35.0%
! ACAACTAATGGACCCTAAAT+TGG + Chr3:85243116-85243135 None:intergenic 35.0%
! ACCCATGGACTTTTACTTAA+AGG + Chr3:85245305-85245324 None:intergenic 35.0%
! CATCTAGCTTGAAACATGTT+TGG + Chr3:85245246-85245265 None:intergenic 35.0%
! CTTATGTCAATTCTTTTGGG+GGG - Chr3:85245829-85245848 MsG0380016567.01.T01:five_prime_UTR 35.0%
! GAAGTGCTATAATTTGAAGG+TGG - Chr3:85242507-85242526 MsG0380016567.01.T01:CDS 35.0%
! GATCTCATCTTCATAATGGA+TGG + Chr3:85244467-85244486 None:intergenic 35.0%
! TTCATCTGAAACGCAATGAA+TGG + Chr3:85243979-85243998 None:intergenic 35.0%
! TTGAGGAGAAATCTCCATTT+TGG - Chr3:85245794-85245813 MsG0380016567.01.T01:exon 35.0%
!! ACTTTGGAACTCTTAATGTG+TGG - Chr3:85243784-85243803 MsG0380016567.01.T01:intron 35.0%
!! CAGGAAGTGCTATAATTTGA+AGG - Chr3:85242504-85242523 MsG0380016567.01.T01:CDS 35.0%
!! CCAAAAGATGTTGATTTCTG+GGG - Chr3:85243219-85243238 MsG0380016567.01.T01:CDS 35.0%
!! GTCTTGTTGCCATATTTTCT+GGG - Chr3:85243510-85243529 MsG0380016567.01.T01:intron 35.0%
!! TGCCACTTCACTTCTATTTT+CGG - Chr3:85242368-85242387 MsG0380016567.01.T01:CDS 35.0%
!!! GCGTGATTTTGAAATCTGAA+TGG - Chr3:85241517-85241536 MsG0380016567.01.T01:intron 35.0%
AAATCACTTTGTTGGCCACT+TGG + Chr3:85243301-85243320 None:intergenic 40.0%
AACAGAAGATTGGCAACTCA+AGG - Chr3:85245514-85245533 MsG0380016567.01.T01:intron 40.0%
AAGATTGGCAACTCAAGGAA+AGG - Chr3:85245519-85245538 MsG0380016567.01.T01:intron 40.0%
AAGCAACAGATCATAGTGTG+AGG + Chr3:85245020-85245039 None:intergenic 40.0%
ACCTTCAAAGAGAGACTGTA+TGG + Chr3:85244021-85244040 None:intergenic 40.0%
ACTACGCAATTTGAGTGTGA+AGG - Chr3:85245646-85245665 MsG0380016567.01.T01:CDS 40.0%
AGAAATTGCTCCTACACCTT+TGG - Chr3:85245141-85245160 MsG0380016567.01.T01:intron 40.0%
AGATGAAGAGAGAGAGAGAA+GGG + Chr3:85240994-85241013 None:intergenic 40.0%
AGATTGGCAACTCAAGGAAA+GGG - Chr3:85245520-85245539 MsG0380016567.01.T01:intron 40.0%
AGCAACAGATCATAGTGTGA+GGG + Chr3:85245019-85245038 None:intergenic 40.0%
CAACTCTTCATTGCTGGATT+TGG - Chr3:85242096-85242115 MsG0380016567.01.T01:intron 40.0%
CAAGAGCCAATGTATCAACA+AGG + Chr3:85243550-85243569 None:intergenic 40.0%
CATGCCCAATTAACCAAAGT+GGG + Chr3:85245273-85245292 None:intergenic 40.0%
CTTAATATGAAATCAGGGGC+CGG - Chr3:85242241-85242260 MsG0380016567.01.T01:intron 40.0%
GAGATCTCAATACATTCCTG+AGG - Chr3:85244481-85244500 MsG0380016567.01.T01:intron 40.0%
GATTGCCCACTTTGGTTAAT+TGG - Chr3:85245265-85245284 MsG0380016567.01.T01:intron 40.0%
GCAATTTCTCAGATAAGACG+CGG + Chr3:85245130-85245149 None:intergenic 40.0%
GCATTAATCTACCTAACGAG+TGG - Chr3:85243806-85243825 MsG0380016567.01.T01:intron 40.0%
GCTTTCGATGACATTGTTGT+TGG - Chr3:85241910-85241929 MsG0380016567.01.T01:intron 40.0%
GGATCTAAGTTTGTCTCGTT+GGG - Chr3:85245854-85245873 MsG0380016567.01.T01:five_prime_UTR 40.0%
GGGTGAAGAAGGTTATATAG+TGG + Chr3:85240974-85240993 None:intergenic 40.0%
GTAAGATACTAGCCATGAAG+AGG + Chr3:85244957-85244976 None:intergenic 40.0%
GTGAAGGAGTTCAAGCTAAA+AGG - Chr3:85245692-85245711 MsG0380016567.01.T01:CDS 40.0%
TAAATCACAGTACCAATGGG+TGG + Chr3:85244292-85244311 None:intergenic 40.0%
TACCAAAAATAGCTTGAGGC+AGG + Chr3:85245201-85245220 None:intergenic 40.0%
TAGATGAAGAGAGAGAGAGA+AGG + Chr3:85240995-85241014 None:intergenic 40.0%
TATCTTTGTCACACAGTGAC+AGG + Chr3:85245091-85245110 None:intergenic 40.0%
TCATCATTTGGGCTTAATGC+AGG + Chr3:85244074-85244093 None:intergenic 40.0%
TCCAAACAGCCCAGAAAATA+TGG + Chr3:85243522-85243541 None:intergenic 40.0%
TCCACATGAATCTATCAGAG+GGG - Chr3:85243431-85243450 MsG0380016567.01.T01:CDS 40.0%
TCTCTGTTAACTCGCGATAA+TGG - Chr3:85241112-85241131 MsG0380016567.01.T01:three_prime_UTR 40.0%
TCTGTATTGAGGAGAATGCT+TGG + Chr3:85242316-85242335 None:intergenic 40.0%
TCTTAAATACGATGTCTGGG+TGG - Chr3:85244719-85244738 MsG0380016567.01.T01:intron 40.0%
TGCCGAAAATAGAAGTGAAG+TGG + Chr3:85242373-85242392 None:intergenic 40.0%
! ATAGCTGGTGATTGGTTACA+AGG - Chr3:85242018-85242037 MsG0380016567.01.T01:intron 40.0%
! ATGTATTTGGTTCGTGTAGC+TGG + Chr3:85245405-85245424 None:intergenic 40.0%
! CAATACAGTTTGATGGCATC+TGG - Chr3:85243052-85243071 MsG0380016567.01.T01:intron 40.0%
! CCCCAGAAATCAACATCTTT+TGG + Chr3:85243222-85243241 None:intergenic 40.0%
! CGTTTTTGTATGGCTATAGC+TGG - Chr3:85242003-85242022 MsG0380016567.01.T01:CDS 40.0%
! GCTGCAGGTTTTCTTACAAT+TGG - Chr3:85243593-85243612 MsG0380016567.01.T01:intron 40.0%
! TATTTTCGGCATTTGAGTCG+TGG - Chr3:85242382-85242401 MsG0380016567.01.T01:CDS 40.0%
! TTAGCTTGAACTCCTTCACT+TGG + Chr3:85245691-85245710 None:intergenic 40.0%
! TTGGAATCAACCTAGTTTGC+AGG + Chr3:85243203-85243222 None:intergenic 40.0%
! TTTTGCAAGAAAGGGGTTGT+AGG + Chr3:85244770-85244789 None:intergenic 40.0%
!! ATCCTGCCTCAAGCTATTTT+TGG - Chr3:85245196-85245215 MsG0380016567.01.T01:intron 40.0%
!! CTTGTTGATACATTGGCTCT+TGG - Chr3:85243548-85243567 MsG0380016567.01.T01:intron 40.0%
!!! GGTCTTGTTGCCATATTTTC+TGG - Chr3:85243509-85243528 MsG0380016567.01.T01:intron 40.0%
AACTCCTTCACTTGGTTGGT+GGG + Chr3:85245683-85245702 None:intergenic 45.0%
AAGTCACACAAGCTCTCTTC+CGG + Chr3:85242263-85242282 None:intergenic 45.0%
AATACATTCCTGAGGAAGCC+AGG - Chr3:85244489-85244508 MsG0380016567.01.T01:intron 45.0%
AATGATGAAGAGATCCCCCA+TGG - Chr3:85244086-85244105 MsG0380016567.01.T01:intron 45.0%
AGATCTCTGATACTGCAGCA+AGG - Chr3:85245220-85245239 MsG0380016567.01.T01:intron 45.0%
AGCAGCAAAGGAAAAACCCA+TGG + Chr3:85245320-85245339 None:intergenic 45.0%
AGCTAGATGATTGCCCACTT+TGG - Chr3:85245257-85245276 MsG0380016567.01.T01:intron 45.0%
AGGAGTCCATAGGAACACAA+AGG + Chr3:85244054-85244073 None:intergenic 45.0%
AGTACCACGAGGAGAAAAGT+AGG - Chr3:85242599-85242618 MsG0380016567.01.T01:intron 45.0%
ATCGGACAACTCTTCATTGC+TGG - Chr3:85242090-85242109 MsG0380016567.01.T01:intron 45.0%
CATAGTGTGAGGGTCTTACT+TGG + Chr3:85245009-85245028 None:intergenic 45.0%
CTTGAACTCCTTCACTTGGT+TGG + Chr3:85245687-85245706 None:intergenic 45.0%
CTTGCCCTGCCTATATTATC+TGG - Chr3:85245344-85245363 MsG0380016567.01.T01:intron 45.0%
GCAGAGGCAATACAGTTTGA+TGG - Chr3:85243045-85243064 MsG0380016567.01.T01:intron 45.0%
GCAGTTCCTACTAAAGCAAC+AGG - Chr3:85244365-85244384 MsG0380016567.01.T01:intron 45.0%
GCATGCCCAATTAACCAAAG+TGG + Chr3:85245274-85245293 None:intergenic 45.0%
GCCATACAGTCTCTCTTTGA+AGG - Chr3:85244017-85244036 MsG0380016567.01.T01:intron 45.0%
GCTAGTTGCTGAGCATTTCA+AGG - Chr3:85242404-85242423 MsG0380016567.01.T01:CDS 45.0%
GGATATGGAAAAGGGGAGAT+CGG - Chr3:85242072-85242091 MsG0380016567.01.T01:intron 45.0%
GGGATCTAAGTTTGTCTCGT+TGG - Chr3:85245853-85245872 MsG0380016567.01.T01:five_prime_UTR 45.0%
GGGGGATCTCTTCATCATTT+GGG + Chr3:85244085-85244104 None:intergenic 45.0%
GTATGGCTATAGCTGGTGAT+TGG - Chr3:85242010-85242029 MsG0380016567.01.T01:intron 45.0%
GTTCCTACTAAAGCAACAGG+TGG - Chr3:85244368-85244387 MsG0380016567.01.T01:intron 45.0%
TCAACGTGTTCCTGCAAACT+AGG - Chr3:85243190-85243209 MsG0380016567.01.T01:intron 45.0%
TGGGGGATCTCTTCATCATT+TGG + Chr3:85244086-85244105 None:intergenic 45.0%
TTCATACCACTCTTGTCTCG+TGG - Chr3:85241018-85241037 MsG0380016567.01.T01:three_prime_UTR 45.0%
TTCTTCTACCTTGTCTTCGG+TGG - Chr3:85241140-85241159 MsG0380016567.01.T01:three_prime_UTR 45.0%
TTGATGTTGGGCCGTATCTT+GGG - Chr3:85242339-85242358 MsG0380016567.01.T01:intron 45.0%
! AAAGTTCATGATGGTGCTCC+TGG + Chr3:85244510-85244529 None:intergenic 45.0%
! AGAGCTTGCTTGCCCAATTT+AGG - Chr3:85243672-85243691 MsG0380016567.01.T01:intron 45.0%
! AGCTTGCTTGCCCAATTTAG+GGG - Chr3:85243674-85243693 MsG0380016567.01.T01:intron 45.0%
! AGTCACTGAGGCATGGTTTT+TGG - Chr3:85242910-85242929 MsG0380016567.01.T01:CDS 45.0%
! CTACACAAAGCCAAAGGTGT+AGG + Chr3:85245154-85245173 None:intergenic 45.0%
! CTCGCTTGCATCTAAGTTGA+TGG - Chr3:85244151-85244170 MsG0380016567.01.T01:intron 45.0%
! GAGCTTGCTTGCCCAATTTA+GGG - Chr3:85243673-85243692 MsG0380016567.01.T01:intron 45.0%
! GCCATATTTTCTGGGCTGTT+TGG - Chr3:85243518-85243537 MsG0380016567.01.T01:intron 45.0%
! GGGTTTTTCCTTTGCTGCTA+AGG - Chr3:85245321-85245340 MsG0380016567.01.T01:intron 45.0%
!! ACAACCTACTTTTCTCCTCG+TGG + Chr3:85242606-85242625 None:intergenic 45.0%
!! ATGTCAATTCTTTTGGGGGG+CGG - Chr3:85245832-85245851 MsG0380016567.01.T01:five_prime_UTR 45.0%
AAAACCTGCAGCAGCGTCAA+AGG + Chr3:85243585-85243604 None:intergenic 50.0%
AAACCTGCAGCAGCGTCAAA+GGG + Chr3:85243584-85243603 None:intergenic 50.0%
AATCTACCTAACGAGTGGGC+TGG - Chr3:85243811-85243830 MsG0380016567.01.T01:intron 50.0%
ACACACTCTGCAAGAGAGAC+TGG - Chr3:85241065-85241084 MsG0380016567.01.T01:three_prime_UTR 50.0%
ATCACAGTACCAATGGGTGG+AGG + Chr3:85244289-85244308 None:intergenic 50.0%
ATGGTACCACGAGACAAGAG+TGG + Chr3:85241027-85241046 None:intergenic 50.0%
CACACTCTGCAAGAGAGACT+GGG - Chr3:85241066-85241085 MsG0380016567.01.T01:three_prime_UTR 50.0%
CCTACTAAAGCAACAGGTGG+TGG - Chr3:85244371-85244390 MsG0380016567.01.T01:intron 50.0%
CTCGAGAACAGCAACAACAG+CGG + Chr3:85241171-85241190 None:intergenic 50.0%
CTTGATGTTGGGCCGTATCT+TGG - Chr3:85242338-85242357 MsG0380016567.01.T01:intron 50.0%
GAACTCCTTCACTTGGTTGG+TGG + Chr3:85245684-85245703 None:intergenic 50.0%
GAGAGAGAGAAGGGTGAAGA+AGG + Chr3:85240985-85241004 None:intergenic 50.0%
GCCCCTCTGATAGATTCATG+TGG + Chr3:85243435-85243454 None:intergenic 50.0%
GGCTTAATGCAGGAGTCCAT+AGG + Chr3:85244064-85244083 None:intergenic 50.0%
GGTGATGCAGCTTGCAATGT+AGG + Chr3:85242295-85242314 None:intergenic 50.0%
TATACTCTCCCTCCACCCAT+TGG - Chr3:85244277-85244296 MsG0380016567.01.T01:intron 50.0%
TCACAGTACCAATGGGTGGA+GGG + Chr3:85244288-85244307 None:intergenic 50.0%
TCACTTTGTTGGCCACTTGG+AGG + Chr3:85243298-85243317 None:intergenic 50.0%
TCTGCATGTAGCTCTCCACA+CGG + Chr3:85244190-85244209 None:intergenic 50.0%
TGGCAATGCCACCCAAGATA+CGG + Chr3:85242353-85242372 None:intergenic 50.0%
! AGAGGGGCTTTGATCAGCAA+TGG - Chr3:85243447-85243466 MsG0380016567.01.T01:CDS 50.0%
! TGGGTGGAGGGAGAGTATAT+TGG + Chr3:85244276-85244295 None:intergenic 50.0%
!! CAGGTTCAATGGCTCTGACT+CGG + Chr3:85245549-85245568 None:intergenic 50.0%
!! CCACCACCTGTTGCTTTAGT+AGG + Chr3:85244374-85244393 None:intergenic 50.0%
!! TACATTGGCTCTTGGACCAG+TGG - Chr3:85243556-85243575 MsG0380016567.01.T01:intron 50.0%
!! TGTCAATTCTTTTGGGGGGC+GGG - Chr3:85245833-85245852 MsG0380016567.01.T01:five_prime_UTR 50.0%
AACCTGCAGCAGCGTCAAAG+GGG + Chr3:85243583-85243602 None:intergenic 55.0%
AAGGCGACTGCTCGTGATTG+CGG - Chr3:85244978-85244997 MsG0380016567.01.T01:intron 55.0%
AGGGCAAGCCTTAGCAGCAA+AGG + Chr3:85245332-85245351 None:intergenic 55.0%
ATGTTGGGCCGTATCTTGGG+TGG - Chr3:85242342-85242361 MsG0380016567.01.T01:intron 55.0%
CACCGCAGCACCCCTAAATT+GGG + Chr3:85243687-85243706 None:intergenic 55.0%
CGGCTAATCCACCGAAGACA+AGG + Chr3:85241151-85241170 None:intergenic 55.0%
GCCCAAAAGCTGAATGCACC+CGG + Chr3:85244408-85244427 None:intergenic 55.0%
GGCTCGTTCATCATTCCGTG+TGG - Chr3:85244172-85244191 MsG0380016567.01.T01:intron 55.0%
TAATGGCCAGCCCACTCGTT+AGG + Chr3:85243820-85243839 None:intergenic 55.0%
! GCCGGGTGCATTCAGCTTTT+GGG - Chr3:85244404-85244423 MsG0380016567.01.T01:intron 55.0%
! GTAGTGGAGTCACTGAGGCA+TGG - Chr3:85242903-85242922 MsG0380016567.01.T01:CDS 55.0%
! GTGGTGTAGTGGAGTCACTG+AGG - Chr3:85242898-85242917 MsG0380016567.01.T01:CDS 55.0%
!! TGCCCAATTTAGGGGTGCTG+CGG - Chr3:85243682-85243701 MsG0380016567.01.T01:intron 55.0%
ACCTGCAGCAGCGTCAAAGG+GGG + Chr3:85243582-85243601 None:intergenic 60.0%
ATGGTGCTCCTGGCTTCCTC+AGG + Chr3:85244500-85244519 None:intergenic 60.0%
CCACCGCAGCACCCCTAAAT+TGG + Chr3:85243688-85243707 None:intergenic 60.0%
GGTGCCCACCAACCAAGTGA+AGG - Chr3:85245676-85245695 MsG0380016567.01.T01:CDS 60.0%
GTGGTGGTCTCTCATTCGCC+GGG - Chr3:85244387-85244406 MsG0380016567.01.T01:intron 60.0%
! CGCCGGGTGCATTCAGCTTT+TGG - Chr3:85244403-85244422 MsG0380016567.01.T01:intron 60.0%
! GGTGGTGGTCTCTCATTCGC+CGG - Chr3:85244386-85244405 MsG0380016567.01.T01:intron 60.0%
!! CCAATTTAGGGGTGCTGCGG+TGG - Chr3:85243685-85243704 MsG0380016567.01.T01:intron 60.0%
GCTGCGGTGGCCATTGCTTC+TGG - Chr3:85243698-85243717 MsG0380016567.01.T01:intron 65.0%
GCAGCGTCAAAGGGGGCCAC+TGG + Chr3:85243575-85243594 None:intergenic 70.0%
GCCCCCTTTGACGCTGCTGC+AGG - Chr3:85243578-85243597 MsG0380016567.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr3 gene 85240953 85245976 85240953 ID=MsG0380016567.01;Name=MsG0380016567.01
Chr3 mRNA 85240953 85245976 85240953 ID=MsG0380016567.01.T01;Parent=MsG0380016567.01;Name=MsG0380016567.01.T01;_AED=0.31;_eAED=0.31;_QI=178|0.85|0.75|1|0.85|0.75|8|405|482
Chr3 exon 85240953 85241416 85240953 ID=MsG0380016567.01.T01:exon:14516;Parent=MsG0380016567.01.T01
Chr3 exon 85241920 85242022 85241920 ID=MsG0380016567.01.T01:exon:14515;Parent=MsG0380016567.01.T01
Chr3 exon 85242355 85242570 85242355 ID=MsG0380016567.01.T01:exon:14514;Parent=MsG0380016567.01.T01
Chr3 exon 85242670 85242935 85242670 ID=MsG0380016567.01.T01:exon:14513;Parent=MsG0380016567.01.T01
Chr3 exon 85243210 85243480 85243210 ID=MsG0380016567.01.T01:exon:14512;Parent=MsG0380016567.01.T01
Chr3 exon 85244504 85244672 85244504 ID=MsG0380016567.01.T01:exon:14511;Parent=MsG0380016567.01.T01
Chr3 exon 85244763 85244974 85244763 ID=MsG0380016567.01.T01:exon:14510;Parent=MsG0380016567.01.T01
Chr3 exon 85245646 85245976 85245646 ID=MsG0380016567.01.T01:exon:14509;Parent=MsG0380016567.01.T01
Chr3 five_prime_UTR 85245799 85245976 85245799 ID=MsG0380016567.01.T01:five_prime_utr;Parent=MsG0380016567.01.T01
Chr3 CDS 85245646 85245798 85245646 ID=MsG0380016567.01.T01:cds;Parent=MsG0380016567.01.T01
Chr3 CDS 85244763 85244974 85244763 ID=MsG0380016567.01.T01:cds;Parent=MsG0380016567.01.T01
Chr3 CDS 85244504 85244672 85244504 ID=MsG0380016567.01.T01:cds;Parent=MsG0380016567.01.T01
Chr3 CDS 85243210 85243480 85243210 ID=MsG0380016567.01.T01:cds;Parent=MsG0380016567.01.T01
Chr3 CDS 85242670 85242935 85242670 ID=MsG0380016567.01.T01:cds;Parent=MsG0380016567.01.T01
Chr3 CDS 85242355 85242570 85242355 ID=MsG0380016567.01.T01:cds;Parent=MsG0380016567.01.T01
Chr3 CDS 85241920 85242022 85241920 ID=MsG0380016567.01.T01:cds;Parent=MsG0380016567.01.T01
Chr3 CDS 85241358 85241416 85241358 ID=MsG0380016567.01.T01:cds;Parent=MsG0380016567.01.T01
Chr3 three_prime_UTR 85240953 85241357 85240953 ID=MsG0380016567.01.T01:three_prime_utr;Parent=MsG0380016567.01.T01
Gene Sequence

>MsG0380016567.01.T01

ATGGAGTTGTTCTTCTACCTTGTCTTCGGTGGATTAGCCGCTGTTGTTGCTGTTCTCGAGCTTAGCAAAAACAACAAAGATCGTATCAACACTTCTTCTGTTTTCAATTCCTTCAAGAACAATTATCTTCTCATTTATTCTCTCATGATGGGTATCGTAATTGTTAGTAGAGATGTTAGTTTTAGTGATCTTAATAGGTTTCGTTTTTGTATGGCTATAGCTGGTGATTGGTTACAAGGTCCATATGTTTACTACCTATACAGTACGTATGGATATGGAAAAGGGGAGATCGGACAACTCTTCATTGCTGGATTTGGGTCTTCGATGTTATTCGGAACAATTGTGGGATCTCTTGCTGACAAACAGGGCCGGAAGAGAGCTTGTGTGACTTACTGTATAACCTACATTGCAAGCTGCATCACCAAGCATTCTCCTCAATACAGAGTCTTGATGTTGGGCCGTATCTTGGGTGGCATTGCCACTTCACTTCTATTTTCGGCATTTGAGTCGTGGCTAGTTGCTGAGCATTTCAAGAGGGGCTTTGATCAGCAATGGCTATCATTAACATTCTCGAAGGCTATATTTCTTGGAAATGGTCTTGTTGCCATATTTTCTGGGCTGTTTGGAAATGTCCTTGTTGATACATTGGCTCTTGGACCAGTGGCCCCCTTTGACGCTGCTGCAGGTTTTCTTACAATTGGTATGATCGTGATATTATCTACATGGACAGAAAACTATGGAGATGCTTCTGAAAACAAGAGCTTGCTTGCCCAATTTAGGGGTGCTGCGGTGGCCATTGCTTCTGATGAAAAAATAGCTTTGCTTGGTGCCATACAGTCTCTCTTTGAAGGTTCAATGTATACCTTTGTGTTCCTATGGACTCCTGCATTAAGCCCAAATGATGAAGAGATCCCCCATGGTTTTATTTTTGCAACATTCATGTTATCTTCAATGTTGGGAAGCTCGCTTGCATCTAAGTTGATGGCTCGTTCATCATTCCGTGTGGAGAGCTACATGCAGATTGTTTTTGCAGTTTCTTCTGCTTCTCTAATGCTTCCCATTCTTACCACTTTTTTTGCAGTTCCTACTAAAGCAACAGGTGGTGGTCTCTCATTCGCCGGGTGCATTCAGCTTTTGGGCTTCTGTACTTTTGAAAGTTGTGTTGGCATATTCTGGCCATCCATTATGAAGATGAGATCTCAATACATTCCTGAGGAAGCCAGGAGCACCATCATGAACTTTTTCCGCATTCCTCTGAACATTTTTGTGTGTGTTGTGCTGTACAATGTTGATGCATTCCCTATCACTGTTATGTTTGGCATGTGCTCAATTTTCCTCTTCATGGCTAGTATCTTACAAAGGCGACTGCTCGTGATTGCGGATAAGCCAAAAACAGAAGATTGGCAACTCAAGGAAAGGGACACCGAGTCAGAGCCATTGAACCTGTAA

Protein sequence

>MsG0380016567.01.T01

MELFFYLVFGGLAAVVAVLELSKNNKDRINTSSVFNSFKNNYLLIYSLMMGIVIVSRDVSFSDLNRFRFCMAIAGDWLQGPYVYYLYSTYGYGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYIASCITKHSPQYRVLMLGRILGGIATSLLFSAFESWLVAEHFKRGFDQQWLSLTFSKAIFLGNGLVAIFSGLFGNVLVDTLALGPVAPFDAAAGFLTIGMIVILSTWTENYGDASENKSLLAQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLSSMLGSSLASKLMARSSFRVESYMQIVFAVSSASLMLPILTTFFAVPTKATGGGLSFAGCIQLLGFCTFESCVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPLNIFVCVVLYNVDAFPITVMFGMCSIFLFMASILQRRLLVIADKPKTEDWQLKERDTESEPLNL*