AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380015683.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015683.01.T01 MTR_3g089170 95.337 193 8 1 1 192 1 193 7.76e-120 337
MsG0380015683.01.T01 MTR_7g087480 35.955 89 52 1 107 190 187 275 1.44e-12 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 75 sgRNAs with CRISPR-Local

Find 145 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATAAATTCAATAGATTCTT+TGG 0.153478 3:-73694839 None:intergenic
GAATATCGTGCCTCGATTAA+AGG 0.236777 3:+73696084 MsG0380015683.01.T01:intron
CAGTGGCATTCCTTTGTTAA+AGG 0.273235 3:+73696923 MsG0380015683.01.T01:three_prime_UTR
GGTCGAGGTCATAGTCATTT+TGG 0.286432 3:-73694939 None:intergenic
TTCCCGTACTAATTCCCTTT+TGG 0.294888 3:-73696804 None:intergenic
TATTTACCATGGCTGAAAAT+TGG 0.305310 3:-73696678 None:intergenic
CAGTAGATTATGTCCTTGAT+TGG 0.333090 3:+73697077 MsG0380015683.01.T01:three_prime_UTR
AAAGGCAATGACATGGAATA+TGG 0.335763 3:+73696102 MsG0380015683.01.T01:CDS
AACGTTGTGGGGTCATTTGC+CGG 0.343410 3:+73694798 MsG0380015683.01.T01:CDS
GACATGGAATATGGCAAATC+AGG 0.347278 3:+73696111 MsG0380015683.01.T01:CDS
ATAGCGTGCATAAGTGAAAT+AGG 0.358914 3:-73696853 None:intergenic
TACAGCTGTTATTAATTTGA+AGG 0.367226 3:+73696153 MsG0380015683.01.T01:CDS
CTTTGGATAATCATCCTTGC+AGG 0.380031 3:-73695867 None:intergenic
AATTTATTCTTCAAGCCCTT+TGG 0.382156 3:+73694854 MsG0380015683.01.T01:CDS
CGGTCTTTCTTGTTCTCCAA+AGG 0.393295 3:-73694870 None:intergenic
AGTGGCATTCCTTTGTTAAA+GGG 0.403028 3:+73696924 MsG0380015683.01.T01:three_prime_UTR
CTTTGTTAAAGGGAGCAGTC+TGG 0.404121 3:+73696934 MsG0380015683.01.T01:three_prime_UTR
TTTGTTAAAGGGAGCAGTCT+GGG 0.415825 3:+73696935 MsG0380015683.01.T01:three_prime_UTR
TTTGCCTCCGAATGTTAATC+AGG 0.432673 3:+73695825 MsG0380015683.01.T01:CDS
ACTTCATCGGGAAACAACTT+TGG 0.435951 3:-73695884 None:intergenic
CAATTCAGGCAGAACTTCAT+CGG 0.443463 3:-73695897 None:intergenic
TTTGGAGTTGGAGCATGTCT+TGG 0.446201 3:-73694921 None:intergenic
CTACAGAATCTGTAGCCAAC+TGG 0.446864 3:-73696621 None:intergenic
GAGACGAAATCTCTCTGGTA+TGG 0.455206 3:+73697103 MsG0380015683.01.T01:three_prime_UTR
ATTTCGTCTCATTCCAATCA+AGG 0.458614 3:-73697090 None:intergenic
GGTCTTTCTTGTTCTCCAAA+GGG 0.474820 3:-73694869 None:intergenic
TACATCTGTCATCAGATTGA+AGG 0.478081 3:-73694894 None:intergenic
TGTCAGGATGAGGCACCAAA+AGG 0.480559 3:+73696789 MsG0380015683.01.T01:intron
AATGAGTTTGCATTTGAATG+AGG 0.491542 3:-73696884 None:intergenic
AGTTTAACAGCTGGTTGTTG+TGG 0.491663 3:+73697133 MsG0380015683.01.T01:three_prime_UTR
AGAAGATGTGTTGAAAGATC+AGG 0.495914 3:+73695967 MsG0380015683.01.T01:CDS
CAGTATGGAGCAAACGTTGT+GGG 0.505686 3:+73694786 None:intergenic
CACACCTCCTGATTAACATT+CGG 0.510944 3:-73695832 None:intergenic
AATTCAGGCAGAACTTCATC+GGG 0.511626 3:-73695896 None:intergenic
GCACCAAAAGGGAATTAGTA+CGG 0.514793 3:+73696801 MsG0380015683.01.T01:exon
CAGACTGCTCCCTTTAACAA+AGG 0.517555 3:-73696933 None:intergenic
TTCAAATTAATAACAGCTGT+AGG 0.520653 3:-73696151 None:intergenic
AGACGAAATCTCTCTGGTAT+GGG 0.523739 3:+73697104 MsG0380015683.01.T01:three_prime_UTR
GGAATGAGACGAAATCTCTC+TGG 0.528339 3:+73697098 MsG0380015683.01.T01:three_prime_UTR
CACCAAAAGGGAATTAGTAC+GGG 0.534282 3:+73696802 MsG0380015683.01.T01:exon
TAAGTGAAATAGGTCTCCTA+TGG 0.534972 3:-73696843 None:intergenic
TCAAATTAATAACAGCTGTA+GGG 0.537158 3:-73696150 None:intergenic
AAATTTAAAGTACCGGGTCG+AGG 0.541413 3:-73694954 None:intergenic
AAGGGAGCAGTCTGGGGTGA+CGG 0.541931 3:+73696942 MsG0380015683.01.T01:three_prime_UTR
TACTAATCACTGTCTTGCTA+AGG 0.552838 3:-73696979 None:intergenic
TCGATTTCACTCGGGAGAGT+TGG 0.553433 3:+73696588 MsG0380015683.01.T01:CDS
CTCTCTATCACTAAAACCAC+TGG 0.555472 3:-73697028 None:intergenic
TTGGTCTCTCATATTGTGCA+TGG 0.556584 3:-73696659 None:intergenic
GGGGAGACTAGTTTAACAGC+TGG 0.558423 3:+73697124 MsG0380015683.01.T01:three_prime_UTR
AAATGATGCTCGATTTCACT+CGG 0.558725 3:+73696579 MsG0380015683.01.T01:CDS
GTCAGGATGAGGCACCAAAA+GGG 0.564365 3:+73696790 MsG0380015683.01.T01:intron
CTTTGGAGAACAAGAAAGAC+CGG 0.567693 3:+73694871 MsG0380015683.01.T01:CDS
ATTGATTGAGAAGACTAGAA+AGG 0.568204 3:+73697001 MsG0380015683.01.T01:three_prime_UTR
CATGTCATTGCCTTTAATCG+AGG 0.568647 3:-73696094 None:intergenic
AAAACACTAATATGTACCAT+AGG 0.574591 3:+73696827 MsG0380015683.01.T01:three_prime_UTR
TTTGCATTTGAATGAGGCGG+AGG 0.577817 3:-73696878 None:intergenic
TAACAAAGGAATGCCACTGT+TGG 0.580758 3:-73696919 None:intergenic
TTGTTAAAGGGAGCAGTCTG+GGG 0.599351 3:+73696936 MsG0380015683.01.T01:three_prime_UTR
TGCAGAAGTTTCAGCAACAG+TGG 0.615101 3:+73695942 MsG0380015683.01.T01:CDS
GAGCTAGCATTTAGTAACAC+CGG 0.618190 3:-73694817 None:intergenic
CTCGATTAAAGGCAATGACA+TGG 0.622634 3:+73696095 MsG0380015683.01.T01:CDS
GTTGGATGTGAAGTTCCAGT+TGG 0.623177 3:+73696606 MsG0380015683.01.T01:CDS
GACGAAATCTCTCTGGTATG+GGG 0.629709 3:+73697105 MsG0380015683.01.T01:three_prime_UTR
GCCTCCGAATGTTAATCAGG+AGG 0.634445 3:+73695828 MsG0380015683.01.T01:CDS
GAGTTTGCATTTGAATGAGG+CGG 0.638062 3:-73696881 None:intergenic
TCTGTCATCAGATTGAAGGC+CGG 0.642453 3:-73694890 None:intergenic
TGGGGTGACGGATAAACACT+TGG 0.648113 3:+73696954 MsG0380015683.01.T01:three_prime_UTR
ACCTCCTGATTAACATTCGG+AGG 0.650917 3:-73695829 None:intergenic
CCAGTATGGAGCAAACGTTG+TGG 0.651908 3:+73694785 None:intergenic
AGACTAGAAAGGCGTTCCAG+TGG 0.651964 3:+73697012 MsG0380015683.01.T01:three_prime_UTR
AGTATGGAGCAAACGTTGTG+GGG 0.662397 3:+73694787 None:intergenic
AATGATGCTCGATTTCACTC+GGG 0.664094 3:+73696580 MsG0380015683.01.T01:CDS
TGTTGTAACTCGTCCAACAG+TGG 0.673856 3:+73696906 MsG0380015683.01.T01:three_prime_UTR
AAATGACTATGACCTCGACC+CGG 0.689031 3:+73694942 MsG0380015683.01.T01:CDS
TGTTTATGAAAATACCTGCA+AGG 0.724921 3:+73695853 MsG0380015683.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAACTAATTATTATAATACA+TGG + Chr3:73695173-73695192 MsG0380015683.01.T01:intron 10.0%
!! AAGAATGTATATGATAAAAA+GGG - Chr3:73696419-73696438 None:intergenic 15.0%
!! AATAAATTCAATAGATTCTT+TGG - Chr3:73694842-73694861 None:intergenic 15.0%
!! TAAGAATGTATATGATAAAA+AGG - Chr3:73696420-73696439 None:intergenic 15.0%
!!! AGTAAATAAAGTATTAATAC+TGG - Chr3:73695586-73695605 None:intergenic 15.0%
!!! TTTCTTAATACTTCATTTTT+TGG + Chr3:73695551-73695570 MsG0380015683.01.T01:intron 15.0%
!! AGTATTAAGAAACAAAACAT+AGG - Chr3:73695721-73695740 None:intergenic 20.0%
!! GAAAATAAATGGATATCTAT+AGG + Chr3:73695104-73695123 MsG0380015683.01.T01:intron 20.0%
!! GTATTAAGAAACAAAACATA+GGG - Chr3:73695720-73695739 None:intergenic 20.0%
!! TACATATATACATAACAACA+AGG - Chr3:73696489-73696508 None:intergenic 20.0%
!! TTCAAACACTAGAAAATAAA+TGG + Chr3:73695093-73695112 MsG0380015683.01.T01:intron 20.0%
!!! AATGAAGTATTAAGAAATGA+AGG - Chr3:73695548-73695567 None:intergenic 20.0%
!!! AATTAAGTTGTTTATCAACA+TGG + Chr3:73695494-73695513 MsG0380015683.01.T01:intron 20.0%
!!! ATTAAGTTGTTTATCAACAT+GGG + Chr3:73695495-73695514 MsG0380015683.01.T01:intron 20.0%
! AAAACACTAATATGTACCAT+AGG + Chr3:73696827-73696846 MsG0380015683.01.T01:three_prime_UTR 25.0%
! ACTTATCAGGAACAAAATAT+AGG - Chr3:73695630-73695649 None:intergenic 25.0%
! ACTTTATTAGAGAGTAAAGT+CGG + Chr3:73696249-73696268 MsG0380015683.01.T01:intron 25.0%
! AGCATAAGACTAAATGAAAT+AGG - Chr3:73695056-73695075 None:intergenic 25.0%
! CTTATCAGGAACAAAATATA+GGG - Chr3:73695629-73695648 None:intergenic 25.0%
! GTGTGTTAAATGATTACATA+TGG + Chr3:73696511-73696530 MsG0380015683.01.T01:intron 25.0%
! TAACTTTCACTTGATTGAAT+TGG + Chr3:73696709-73696728 MsG0380015683.01.T01:intron 25.0%
! TAGTAAACTCAGAAAATCAA+TGG - Chr3:73696356-73696375 None:intergenic 25.0%
! TATTAGCATAAGCAATGTTT+GGG + Chr3:73695274-73695293 MsG0380015683.01.T01:intron 25.0%
! TCAAATTAATAACAGCTGTA+GGG - Chr3:73696153-73696172 None:intergenic 25.0%
! TCTTGCTAAATCAGTTTATT+GGG + Chr3:73695027-73695046 MsG0380015683.01.T01:intron 25.0%
! TTATTAGCATAAGCAATGTT+TGG + Chr3:73695273-73695292 MsG0380015683.01.T01:intron 25.0%
! TTCAAATTAATAACAGCTGT+AGG - Chr3:73696154-73696173 None:intergenic 25.0%
!! AAGACAGAAATTTAAAGTAC+CGG - Chr3:73694964-73694983 None:intergenic 25.0%
!! TAAAGTATTAATACTGGAAG+TGG - Chr3:73695580-73695599 None:intergenic 25.0%
!! TACAGCTGTTATTAATTTGA+AGG + Chr3:73696153-73696172 MsG0380015683.01.T01:CDS 25.0%
!!! TATGATAAAAAGGGTATTGA+AGG - Chr3:73696410-73696429 None:intergenic 25.0%
AATGAGTTTGCATTTGAATG+AGG - Chr3:73696887-73696906 None:intergenic 30.0%
AATTTATTCTTCAAGCCCTT+TGG + Chr3:73694854-73694873 MsG0380015683.01.T01:CDS 30.0%
AGATGTGCATTTCAATAATG+TGG + Chr3:73696458-73696477 MsG0380015683.01.T01:intron 30.0%
ATTGATTGAGAAGACTAGAA+AGG + Chr3:73697001-73697020 MsG0380015683.01.T01:three_prime_UTR 30.0%
CTCTTGCTAAATCAGTTTAT+TGG + Chr3:73695026-73695045 MsG0380015683.01.T01:intron 30.0%
CTTTCTCATTTGTTCTACAA+AGG + Chr3:73695206-73695225 MsG0380015683.01.T01:intron 30.0%
TATTTACCATGGCTGAAAAT+TGG - Chr3:73696681-73696700 None:intergenic 30.0%
TGTTTATGAAAATACCTGCA+AGG + Chr3:73695853-73695872 MsG0380015683.01.T01:CDS 30.0%
TTACAGCATAGTATTTACCA+TGG - Chr3:73696692-73696711 None:intergenic 30.0%
TTATCATATGATAAGCGCTT+AGG + Chr3:73695459-73695478 MsG0380015683.01.T01:intron 30.0%
TTCACTTGATTGAATTGGAA+TGG + Chr3:73696714-73696733 MsG0380015683.01.T01:intron 30.0%
TTGTTTGTGAGCTCAATTAT+TGG + Chr3:73696014-73696033 MsG0380015683.01.T01:intron 30.0%
! AGACAGAAATTTAAAGTACC+GGG - Chr3:73694963-73694982 None:intergenic 30.0%
! TACTTCACAGCTTTTTAATG+TGG + Chr3:73695737-73695756 MsG0380015683.01.T01:intron 30.0%
!! AAAAAGGGTATTGAAGGAAA+GGG - Chr3:73696404-73696423 None:intergenic 30.0%
!! GCTGTTTTCATATGATATCT+TGG - Chr3:73695370-73695389 None:intergenic 30.0%
!! TAAAAAGGGTATTGAAGGAA+AGG - Chr3:73696405-73696424 None:intergenic 30.0%
AAAGGCAATGACATGGAATA+TGG + Chr3:73696102-73696121 MsG0380015683.01.T01:CDS 35.0%
AAATGATGCTCGATTTCACT+CGG + Chr3:73696579-73696598 MsG0380015683.01.T01:CDS 35.0%
AGAAGATGTGTTGAAAGATC+AGG + Chr3:73695967-73695986 MsG0380015683.01.T01:CDS 35.0%
AGTGGCATTCCTTTGTTAAA+GGG + Chr3:73696924-73696943 MsG0380015683.01.T01:three_prime_UTR 35.0%
ATAGCGTGCATAAGTGAAAT+AGG - Chr3:73696856-73696875 None:intergenic 35.0%
ATGTGTTGAAAGATCAGGTA+TGG + Chr3:73695972-73695991 MsG0380015683.01.T01:intron 35.0%
ATTTCGTCTCATTCCAATCA+AGG - Chr3:73697093-73697112 None:intergenic 35.0%
CAACTCTACTGAACTTTAAG+AGG - Chr3:73696188-73696207 None:intergenic 35.0%
CAGTAGATTATGTCCTTGAT+TGG + Chr3:73697077-73697096 MsG0380015683.01.T01:three_prime_UTR 35.0%
CATGCATAATAAATCGTAGG+TGG + Chr3:73696318-73696337 MsG0380015683.01.T01:intron 35.0%
CTCTTAAAGTTCAGTAGAGT+TGG + Chr3:73696186-73696205 MsG0380015683.01.T01:intron 35.0%
GTGCATGCATAATAAATCGT+AGG + Chr3:73696315-73696334 MsG0380015683.01.T01:intron 35.0%
TAACATAAGTTGTCAGGATG+AGG + Chr3:73696779-73696798 MsG0380015683.01.T01:intron 35.0%
TAAGAAATGAAGGCGAACTT+TGG - Chr3:73695538-73695557 None:intergenic 35.0%
TAAGTGAAATAGGTCTCCTA+TGG - Chr3:73696846-73696865 None:intergenic 35.0%
TACAAAGGAAGAGAGGTTAA+GGG + Chr3:73695221-73695240 MsG0380015683.01.T01:intron 35.0%
TACATCTGTCATCAGATTGA+AGG - Chr3:73694897-73694916 None:intergenic 35.0%
TACTAATCACTGTCTTGCTA+AGG - Chr3:73696982-73697001 None:intergenic 35.0%
TCAAATAAGCCAATTCGAAC+AGG - Chr3:73695247-73695266 None:intergenic 35.0%
TGTGCTTAACATAAGTTGTC+AGG + Chr3:73696773-73696792 MsG0380015683.01.T01:intron 35.0%
TTGATGAACAACTCAATGGT+TGG + Chr3:73696284-73696303 MsG0380015683.01.T01:intron 35.0%
TTTGTTCTACAAAGGAAGAG+AGG + Chr3:73695214-73695233 MsG0380015683.01.T01:intron 35.0%
! AAAGGGATTTAGTTCCTCTT+CGG - Chr3:73696387-73696406 None:intergenic 35.0%
! ACTGTTGATGAACAACTCAA+TGG + Chr3:73696280-73696299 MsG0380015683.01.T01:intron 35.0%
! CAGCTTTTTAATGTGGTAGT+AGG + Chr3:73695744-73695763 MsG0380015683.01.T01:intron 35.0%
! GTCAATAGCTTTTGCAATTC+AGG - Chr3:73695914-73695933 None:intergenic 35.0%
!! GTAGAGTTGGTAATTTCCTT+CGG + Chr3:73696199-73696218 MsG0380015683.01.T01:intron 35.0%
!! GTTCCTGATAAGTTGATTGT+TGG + Chr3:73695637-73695656 MsG0380015683.01.T01:intron 35.0%
!! TAGAGTTGGTAATTTCCTTC+GGG + Chr3:73696200-73696219 MsG0380015683.01.T01:intron 35.0%
AATGATGCTCGATTTCACTC+GGG + Chr3:73696580-73696599 MsG0380015683.01.T01:CDS 40.0%
AATTCAGGCAGAACTTCATC+GGG - Chr3:73695899-73695918 None:intergenic 40.0%
ACTTCATCGGGAAACAACTT+TGG - Chr3:73695887-73695906 None:intergenic 40.0%
AGACGAAATCTCTCTGGTAT+GGG + Chr3:73697104-73697123 MsG0380015683.01.T01:three_prime_UTR 40.0%
AGTTTAACAGCTGGTTGTTG+TGG + Chr3:73697133-73697152 MsG0380015683.01.T01:three_prime_UTR 40.0%
CAATGACGATCTTCAATTCG+TGG - Chr3:73695673-73695692 None:intergenic 40.0%
CAATTCAGGCAGAACTTCAT+CGG - Chr3:73695900-73695919 None:intergenic 40.0%
CACACCTCCTGATTAACATT+CGG - Chr3:73695835-73695854 None:intergenic 40.0%
CACCAAAAGGGAATTAGTAC+GGG + Chr3:73696802-73696821 MsG0380015683.01.T01:exon 40.0%
CAGTGGCATTCCTTTGTTAA+AGG + Chr3:73696923-73696942 MsG0380015683.01.T01:three_prime_UTR 40.0%
CATGTCATTGCCTTTAATCG+AGG - Chr3:73696097-73696116 None:intergenic 40.0%
CTACAAAGGAAGAGAGGTTA+AGG + Chr3:73695220-73695239 MsG0380015683.01.T01:intron 40.0%
CTCGATTAAAGGCAATGACA+TGG + Chr3:73696095-73696114 MsG0380015683.01.T01:CDS 40.0%
CTCTCTATCACTAAAACCAC+TGG - Chr3:73697031-73697050 None:intergenic 40.0%
CTTTGGATAATCATCCTTGC+AGG - Chr3:73695870-73695889 None:intergenic 40.0%
GAATATCGTGCCTCGATTAA+AGG + Chr3:73696084-73696103 MsG0380015683.01.T01:intron 40.0%
GACATGGAATATGGCAAATC+AGG + Chr3:73696111-73696130 MsG0380015683.01.T01:CDS 40.0%
GAGCTAGCATTTAGTAACAC+CGG - Chr3:73694820-73694839 None:intergenic 40.0%
GAGTTTGCATTTGAATGAGG+CGG - Chr3:73696884-73696903 None:intergenic 40.0%
GCACCAAAAGGGAATTAGTA+CGG + Chr3:73696801-73696820 MsG0380015683.01.T01:exon 40.0%
GCACCAACAATCAACTTATC+AGG - Chr3:73695643-73695662 None:intergenic 40.0%
GGTCTTTCTTGTTCTCCAAA+GGG - Chr3:73694872-73694891 None:intergenic 40.0%
GTAACTCTATCTACAGCTTC+TGG + Chr3:73695802-73695821 MsG0380015683.01.T01:intron 40.0%
TAACAAAGGAATGCCACTGT+TGG - Chr3:73696922-73696941 None:intergenic 40.0%
TGAAAGATCAGGTATGGTCA+GGG + Chr3:73695978-73695997 MsG0380015683.01.T01:intron 40.0%
TTGAAAGATCAGGTATGGTC+AGG + Chr3:73695977-73695996 MsG0380015683.01.T01:intron 40.0%
TTGGTCTCTCATATTGTGCA+TGG - Chr3:73696662-73696681 None:intergenic 40.0%
TTTGCCTCCGAATGTTAATC+AGG + Chr3:73695825-73695844 MsG0380015683.01.T01:CDS 40.0%
TTTGTTAAAGGGAGCAGTCT+GGG + Chr3:73696935-73696954 MsG0380015683.01.T01:three_prime_UTR 40.0%
! ACTGATTTAGCAAGAGAGCA+CGG - Chr3:73695022-73695041 None:intergenic 40.0%
! CTCTACTGAACTTTAAGAGG+CGG - Chr3:73696185-73696204 None:intergenic 40.0%
! CTTTGGAGAACAAGAAAGAC+CGG + Chr3:73694871-73694890 MsG0380015683.01.T01:CDS 40.0%
! TTCCCGTACTAATTCCCTTT+TGG - Chr3:73696807-73696826 None:intergenic 40.0%
!! AAATTTAAAGTACCGGGTCG+AGG - Chr3:73694957-73694976 None:intergenic 40.0%
!!! CAGTGGTTTTAGTGATAGAG+AGG + Chr3:73697029-73697048 MsG0380015683.01.T01:three_prime_UTR 40.0%
!!! GGTCATAGTCATTTTGGAGT+TGG - Chr3:73694936-73694955 None:intergenic 40.0%
!!! TGGTTTTAGTGATAGAGAGG+CGG + Chr3:73697032-73697051 MsG0380015683.01.T01:three_prime_UTR 40.0%
AAATGACTATGACCTCGACC+CGG + Chr3:73694942-73694961 MsG0380015683.01.T01:CDS 45.0%
ACCTCCTGATTAACATTCGG+AGG - Chr3:73695832-73695851 None:intergenic 45.0%
CAGACTGCTCCCTTTAACAA+AGG - Chr3:73696936-73696955 None:intergenic 45.0%
CGGTCTTTCTTGTTCTCCAA+AGG - Chr3:73694873-73694892 None:intergenic 45.0%
CTACAGAATCTGTAGCCAAC+TGG - Chr3:73696624-73696643 None:intergenic 45.0%
CTTTGTTAAAGGGAGCAGTC+TGG + Chr3:73696934-73696953 MsG0380015683.01.T01:three_prime_UTR 45.0%
GACGAAATCTCTCTGGTATG+GGG + Chr3:73697105-73697124 MsG0380015683.01.T01:three_prime_UTR 45.0%
GAGACGAAATCTCTCTGGTA+TGG + Chr3:73697103-73697122 MsG0380015683.01.T01:three_prime_UTR 45.0%
GGAATGAGACGAAATCTCTC+TGG + Chr3:73697098-73697117 MsG0380015683.01.T01:three_prime_UTR 45.0%
GTTGGATGTGAAGTTCCAGT+TGG + Chr3:73696606-73696625 MsG0380015683.01.T01:CDS 45.0%
TCTGTCATCAGATTGAAGGC+CGG - Chr3:73694893-73694912 None:intergenic 45.0%
TGCAGAAGTTTCAGCAACAG+TGG + Chr3:73695942-73695961 MsG0380015683.01.T01:CDS 45.0%
TGTTGTAACTCGTCCAACAG+TGG + Chr3:73696906-73696925 MsG0380015683.01.T01:three_prime_UTR 45.0%
TTACTAACTACTCGCCGAAG+AGG + Chr3:73696370-73696389 MsG0380015683.01.T01:intron 45.0%
TTGTTAAAGGGAGCAGTCTG+GGG + Chr3:73696936-73696955 MsG0380015683.01.T01:three_prime_UTR 45.0%
TTTGCATTTGAATGAGGCGG+AGG - Chr3:73696881-73696900 None:intergenic 45.0%
! GAGAGACCAATTTTCAGCCA+TGG + Chr3:73696672-73696691 MsG0380015683.01.T01:CDS 45.0%
! GGTCGAGGTCATAGTCATTT+TGG - Chr3:73694942-73694961 None:intergenic 45.0%
! TTGGTAATTTCCTTCGGGCA+AGG + Chr3:73696205-73696224 MsG0380015683.01.T01:intron 45.0%
! TTTGGAGTTGGAGCATGTCT+TGG - Chr3:73694924-73694943 None:intergenic 45.0%
AACGTTGTGGGGTCATTTGC+CGG + Chr3:73694798-73694817 MsG0380015683.01.T01:CDS 50.0%
GCCTCCGAATGTTAATCAGG+AGG + Chr3:73695828-73695847 MsG0380015683.01.T01:CDS 50.0%
GGTTAAGGGCCTGTTCGAAT+TGG + Chr3:73695235-73695254 MsG0380015683.01.T01:intron 50.0%
TCGATTTCACTCGGGAGAGT+TGG + Chr3:73696588-73696607 MsG0380015683.01.T01:CDS 50.0%
! GTCAGGATGAGGCACCAAAA+GGG + Chr3:73696790-73696809 MsG0380015683.01.T01:intron 50.0%
! TGTCAGGATGAGGCACCAAA+AGG + Chr3:73696789-73696808 MsG0380015683.01.T01:intron 50.0%
!! AGACTAGAAAGGCGTTCCAG+TGG + Chr3:73697012-73697031 MsG0380015683.01.T01:three_prime_UTR 50.0%
!! GGGGAGACTAGTTTAACAGC+TGG + Chr3:73697124-73697143 MsG0380015683.01.T01:three_prime_UTR 50.0%
!! TGGGGTGACGGATAAACACT+TGG + Chr3:73696954-73696973 MsG0380015683.01.T01:three_prime_UTR 50.0%
TTTAGACGAGCCTTGCCCGA+AGG - Chr3:73696218-73696237 None:intergenic 55.0%
! AAGGGAGCAGTCTGGGGTGA+CGG + Chr3:73696942-73696961 MsG0380015683.01.T01:three_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
Chr3 gene 73694790 73697185 73694790 ID=MsG0380015683.01;Name=MsG0380015683.01
Chr3 mRNA 73694790 73697185 73694790 ID=MsG0380015683.01.T01;Parent=MsG0380015683.01;Name=MsG0380015683.01.T01;_AED=0.41;_eAED=0.41;_QI=0|0.5|0.4|1|1|1|5|367|192
Chr3 exon 73694790 73694963 73694790 ID=MsG0380015683.01.T01:exon:819;Parent=MsG0380015683.01.T01
Chr3 exon 73695818 73695988 73695818 ID=MsG0380015683.01.T01:exon:820;Parent=MsG0380015683.01.T01
Chr3 exon 73696085 73696174 73696085 ID=MsG0380015683.01.T01:exon:821;Parent=MsG0380015683.01.T01
Chr3 exon 73696574 73696693 73696574 ID=MsG0380015683.01.T01:exon:822;Parent=MsG0380015683.01.T01
Chr3 exon 73696795 73697185 73696795 ID=MsG0380015683.01.T01:exon:823;Parent=MsG0380015683.01.T01
Chr3 CDS 73694790 73694963 73694790 ID=MsG0380015683.01.T01:cds;Parent=MsG0380015683.01.T01
Chr3 CDS 73695818 73695988 73695818 ID=MsG0380015683.01.T01:cds;Parent=MsG0380015683.01.T01
Chr3 CDS 73696085 73696174 73696085 ID=MsG0380015683.01.T01:cds;Parent=MsG0380015683.01.T01
Chr3 CDS 73696574 73696693 73696574 ID=MsG0380015683.01.T01:cds;Parent=MsG0380015683.01.T01
Chr3 CDS 73696795 73696818 73696795 ID=MsG0380015683.01.T01:cds;Parent=MsG0380015683.01.T01
Chr3 three_prime_UTR 73696819 73697185 73696819 ID=MsG0380015683.01.T01:three_prime_utr;Parent=MsG0380015683.01.T01
Gene Sequence

>MsG0380015683.01.T01

ATGGAGCAAACGTTGTGGGGTCATTTGCCGGTGTTACTAAATGCTAGCTCCAAAGAATCTATTGAATTTATTCTTCAAGCCCTTTGGAGAACAAGAAAGACCGGCCTTCAATCTGATGACAGATGTATCATCCAAGACATGCTCCAACTCCAAAATGACTATGACCTCGACCCGCTTCTGGTTTGCCTCCGAATGTTAATCAGGAGGTGTGTTTATGAAAATACCTGCAAGGATGATTATCCAAAGTTGTTTCCCGATGAAGTTCTGCCTGAATTGCAAAAGCTATTGACACTTCTATTGCAGAAGTTTCAGCAACAGTGGCAAGAAGATGTGTTGAAAGATCAGAATATCGTGCCTCGATTAAAGGCAATGACATGGAATATGGCAAATCAGGATAAAGAATCAGCAGACCCTACAGCTGTTATTAATTTGAAGCTTCAAAATGATGCTCGATTTCACTCGGGAGAGTTGGATGTGAAGTTCCAGTTGGCTACAGATTCTGTAGAGATGATGCTAAAAGCCATGCACAATATGAGAGACCAATTTTCAGCCATGGATGAGGCACCAAAAGGGAATTAG
Protein sequence

>MsG0380015683.01.T01

MEQTLWGHLPVLLNASSKESIEFILQALWRTRKTGLQSDDRCIIQDMLQLQNDYDLDPLLVCLRMLIRRCVYENTCKDDYPKLFPDEVLPELQKLLTLLLQKFQQQWQEDVLKDQNIVPRLKAMTWNMANQDKESADPTAVINLKLQNDARFHSGELDVKFQLATDSVEMMLKAMHNMRDQFSAMDEAPKGN*