AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480020263.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480020263.01.T01 MTR_4g045673 96.875 160 5 0 52 211 1 160 2.66e-111 315
MsG0480020263.01.T01 MTR_2g089050 71.519 158 45 0 52 209 1 158 1.18e-80 238
MsG0480020263.01.T01 MTR_4g092130 55.696 158 70 0 52 209 1 158 2.13e-67 204
MsG0480020263.01.T01 MTR_2g010840 55.063 158 71 0 52 209 1 158 3.01e-59 184
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480020263.01.T01 AT2G32280 63.750 160 58 0 52 211 1 160 9.39e-78 231
MsG0480020263.01.T01 AT2G32280 63.750 160 58 0 52 211 1 160 9.39e-78 231
MsG0480020263.01.T01 AT4G21310 63.291 158 58 0 52 209 1 158 1.78e-72 217
MsG0480020263.01.T01 AT4G21310 60.000 120 48 0 90 209 1 120 3.96e-51 162
MsG0480020263.01.T01 AT1G11500 39.157 166 94 1 51 209 5 170 6.37e-34 120
MsG0480020263.01.T01 AT1G11500 39.375 160 90 1 57 209 6 165 8.93e-34 119
MsG0480020263.01.T01 AT1G11500 42.105 114 66 0 96 209 24 137 3.17e-27 102
MsG0480020263.01.T01 AT1G05291 40.000 145 80 3 63 204 23 163 5.17e-24 94.7

Find 56 sgRNAs with CRISPR-Local

Find 160 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGTTGATTTCCTCTAATTT+AGG 0.158049 4:-37697564 MsG0480020263.01.T01:CDS
ATAGAAAACACAAATATTTC+AGG 0.228751 4:+37695992 None:intergenic
TGTTGATTTCCTCTAATTTA+GGG 0.237395 4:-37697563 MsG0480020263.01.T01:CDS
TCCATTCAACCCTAAATTAG+AGG 0.268775 4:+37697554 None:intergenic
GTTGGGTGCAGCAGTGCTAT+TGG 0.296588 4:-37695685 MsG0480020263.01.T01:CDS
TTGGGTGCAGCAGTGCTATT+GGG 0.315421 4:-37695684 MsG0480020263.01.T01:CDS
CAATTGTGTTTGTTCTCAAC+AGG 0.330421 4:-37695625 MsG0480020263.01.T01:CDS
ATTGCAACCACCTAACAAAT+TGG 0.332978 4:+37695644 None:intergenic
GATGTTGCAGCTGGTATTCT+TGG 0.343709 4:-37695916 MsG0480020263.01.T01:CDS
TATATTACCAGGTTAAAATA+AGG 0.351790 4:+37695559 None:intergenic
GGATTGTCCATGCTGGTGAT+AGG 0.356876 4:-37695074 MsG0480020263.01.T01:CDS
TCCTCTAATTTAGGGTTGAA+TGG 0.372615 4:-37697555 MsG0480020263.01.T01:CDS
AGTCATGATGCATTCATGTT+GGG 0.379872 4:-37695708 MsG0480020263.01.T01:CDS
CATTGTTACCACTGCTTCCA+TGG 0.385326 4:-37694940 MsG0480020263.01.T01:CDS
CACCATCACTTTCTGTCCAT+TGG 0.397413 4:-37695008 MsG0480020263.01.T01:CDS
AAAGTACTGAGAGTTGTCTA+TGG 0.408478 4:+37695583 None:intergenic
ATCAGGGTTGTAGTGGCTGT+TGG 0.413714 4:-37695095 MsG0480020263.01.T01:intron
TTGTCTCTTAATTGTTATCA+TGG 0.414420 4:-37695938 MsG0480020263.01.T01:CDS
GATGCATTCATGTTGGGGTT+GGG 0.417964 4:-37695702 MsG0480020263.01.T01:CDS
TGATGCATTCATGTTGGGGT+TGG 0.440154 4:-37695703 MsG0480020263.01.T01:CDS
GATTGTCCATGCTGGTGATA+GGG 0.456865 4:-37695073 MsG0480020263.01.T01:CDS
ATCACTTTCTGTCCATTGGT+GGG 0.474245 4:-37695004 MsG0480020263.01.T01:CDS
GGGAATGGCTTCTGATGGTA+TGG 0.489992 4:-37697377 MsG0480020263.01.T01:CDS
AAAACAGGTTAAGCATTTGA+AGG 0.491275 4:-37695757 MsG0480020263.01.T01:intron
CATCACTTTCTGTCCATTGG+TGG 0.493082 4:-37695005 MsG0480020263.01.T01:CDS
TAGAAAACACAAATATTTCA+GGG 0.504564 4:+37695993 None:intergenic
TTTAGGGTTGAATGGAAATG+AGG 0.515812 4:-37697547 MsG0480020263.01.T01:CDS
TACAAAATGGCTAGAGTAGG+AGG 0.525528 4:-37695970 MsG0480020263.01.T01:CDS
TAGGGGCTATGTCAAACAAC+AGG 0.531371 4:-37695055 MsG0480020263.01.T01:CDS
GGCTGTTGGATTGTCCATGC+TGG 0.538448 4:-37695081 MsG0480020263.01.T01:CDS
AGAAGCTGGTTCAGATGATG+TGG 0.541519 4:-37697398 MsG0480020263.01.T01:CDS
TTCTCAACAGGAATTTGAGA+AGG 0.542952 4:-37695613 MsG0480020263.01.T01:CDS
AACATGAATGCATCATGACT+TGG 0.543468 4:+37695711 None:intergenic
AGGGTTGAATGGAAATGAGG+AGG 0.547928 4:-37697544 MsG0480020263.01.T01:CDS
TCTTACAAAATACTAATCCA+TGG 0.550482 4:+37694923 None:intergenic
AGGTTAAGCATTTGAAGGTG+TGG 0.557434 4:-37695752 MsG0480020263.01.T01:CDS
AAGTCATGATGCATTCATGT+TGG 0.560649 4:-37695709 MsG0480020263.01.T01:CDS
CTATACAAAATGGCTAGAGT+AGG 0.569931 4:-37695973 MsG0480020263.01.T01:CDS
GTTGTTGATCAGGGTTGTAG+TGG 0.569996 4:-37695102 MsG0480020263.01.T01:intron
AGCTGGTATTCTTGGCGTTG+AGG 0.570451 4:-37695908 MsG0480020263.01.T01:CDS
GTTATCATGGATGTTGCAGC+TGG 0.584347 4:-37695925 MsG0480020263.01.T01:CDS
TTGAATGGAAATGAGGAGGA+TGG 0.587240 4:-37697540 MsG0480020263.01.T01:intron
AAGTACTGAGAGTTGTCTAT+GGG 0.588754 4:+37695584 None:intergenic
AAAACATGAAATCCCACCAA+TGG 0.590722 4:+37694992 None:intergenic
ATACTAATCCATGGAAGCAG+TGG 0.591196 4:+37694932 None:intergenic
ATTGTCCATGCTGGTGATAG+GGG 0.591559 4:-37695072 MsG0480020263.01.T01:CDS
TATGTCAAACAACAGGTCAA+AGG 0.592422 4:-37695048 MsG0480020263.01.T01:CDS
TGGTTCAGATGATGTGGGAA+TGG 0.604331 4:-37697392 MsG0480020263.01.T01:CDS
TACTGAGAGTTGTCTATGGG+AGG 0.604411 4:+37695587 None:intergenic
AACAGGTCAAAGGATTCTTG+TGG 0.609881 4:-37695038 MsG0480020263.01.T01:CDS
GTCATGATGCATTCATGTTG+GGG 0.612266 4:-37695707 MsG0480020263.01.T01:CDS
GGCTGAAATAGCACAAAACA+AGG 0.634712 4:-37695887 MsG0480020263.01.T01:intron
GAAGCTGGTTCAGATGATGT+GGG 0.642305 4:-37697397 MsG0480020263.01.T01:CDS
CATAGCCCCTATCACCAGCA+TGG 0.647824 4:+37695067 None:intergenic
CACCAATGGACAGAAAGTGA+TGG 0.668068 4:+37695006 None:intergenic
GATGTGGGAATGGCTTCTGA+TGG 0.689261 4:-37697382 MsG0480020263.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAATAAGAGTATAAATAAA+AGG + Chr4:37696402-37696421 None:intergenic 10.0%
!! AAGTTGCAATATTATATTTA+CGG + Chr4:37696147-37696166 None:intergenic 15.0%
!! ATATTTAGTGAATGATTATT+TGG + Chr4:37697363-37697382 None:intergenic 15.0%
!!! AAATAGTACCTTTTTTAATT+GGG - Chr4:37697255-37697274 MsG0480020263.01.T01:intron 15.0%
!!! ATATTTTTTTGTTTTGAACA+AGG - Chr4:37696685-37696704 MsG0480020263.01.T01:intron 15.0%
!!! TAATATATTTTCCAAAATGT+TGG + Chr4:37696659-37696678 None:intergenic 15.0%
!!! TAATTTTGTTTTGAAAATGA+AGG + Chr4:37696117-37696136 None:intergenic 15.0%
!!! TTTGCTTTATTATTTACTTT+TGG + Chr4:37696309-37696328 None:intergenic 15.0%
!! AGTTGCAATATTATATTTAC+GGG + Chr4:37696146-37696165 None:intergenic 20.0%
!! ATAGAAAACACAAATATTTC+AGG + Chr4:37696516-37696535 None:intergenic 20.0%
!! ATCCAAATAAAATATTCTAC+AGG + Chr4:37697093-37697112 None:intergenic 20.0%
!! CAAATAATCTTCAAATTACA+AGG + Chr4:37697121-37697140 None:intergenic 20.0%
!! CTTGTAATTTGAAGATTATT+TGG - Chr4:37697119-37697138 MsG0480020263.01.T01:intron 20.0%
!! TAGAAAACACAAATATTTCA+GGG + Chr4:37696515-37696534 None:intergenic 20.0%
!! TATATTACCAGGTTAAAATA+AGG + Chr4:37696949-37696968 None:intergenic 20.0%
!! TATCAGTTACATTTAGTTAT+TGG + Chr4:37697320-37697339 None:intergenic 20.0%
!! TATTGGATCAAAATACATTT+AGG + Chr4:37697303-37697322 None:intergenic 20.0%
!! TCCAAATAAAATATTCTACA+GGG + Chr4:37697092-37697111 None:intergenic 20.0%
!!! AATAGTACCTTTTTTAATTG+GGG - Chr4:37697256-37697275 MsG0480020263.01.T01:intron 20.0%
!!! CAAATAGTACCTTTTTTAAT+TGG - Chr4:37697254-37697273 MsG0480020263.01.T01:intron 20.0%
!!! TATGTTTCTGAATAAAACTA+TGG + Chr4:37697208-37697227 None:intergenic 20.0%
!!! TTTGTGTTTTCTATACAAAA+TGG - Chr4:37696522-37696541 MsG0480020263.01.T01:intron 20.0%
!!! TTTTTTATTGTCAACAAAAC+AGG - Chr4:37696733-37696752 MsG0480020263.01.T01:intron 20.0%
! ATATTCTCTTCTCCTATTTA+AGG - Chr4:37695683-37695702 MsG0480020263.01.T01:CDS 25.0%
! CCAAATAAAATATTCTACAG+GGG + Chr4:37697091-37697110 None:intergenic 25.0%
! GCAAAGTACAAATTATTTGA+AGG + Chr4:37697152-37697171 None:intergenic 25.0%
! TGTAATTGTGTGAATATAGT+GGG - Chr4:37695976-37695995 MsG0480020263.01.T01:CDS 25.0%
! TTGGAATAACAAAACTAGTT+AGG - Chr4:37696991-37697010 MsG0480020263.01.T01:intron 25.0%
! TTGTAATTGTGTGAATATAG+TGG - Chr4:37695975-37695994 MsG0480020263.01.T01:CDS 25.0%
! TTGTCTCTTAATTGTTATCA+TGG - Chr4:37696567-37696586 MsG0480020263.01.T01:intron 25.0%
!!! TGTTGATTTCCTCTAATTTA+GGG - Chr4:37694942-37694961 MsG0480020263.01.T01:CDS 25.0%
AAAACAGGTTAAGCATTTGA+AGG - Chr4:37696748-37696767 MsG0480020263.01.T01:intron 30.0%
ACACTTTAATACTCAAAGAG+TGG + Chr4:37695868-37695887 None:intergenic 30.0%
ACAGTGGAAAATATATGAAG+TGG + Chr4:37696438-37696457 None:intergenic 30.0%
AGGAGAAGAGAATATAATAG+TGG + Chr4:37695678-37695697 None:intergenic 30.0%
ATGAACTCCCCAATTAAAAA+AGG + Chr4:37697266-37697285 None:intergenic 30.0%
ATGAGCGTTTGAAGAATATA+AGG - Chr4:37695709-37695728 MsG0480020263.01.T01:CDS 30.0%
CAGTGGAAAATATATGAAGT+GGG + Chr4:37696437-37696456 None:intergenic 30.0%
GATCAACAACACAATCAAAA+GGG + Chr4:37697393-37697412 None:intergenic 30.0%
GATCATTTCAAAAGAAGCAA+AGG - Chr4:37695550-37695569 MsG0480020263.01.T01:intron 30.0%
GTGATGATAATTATGAGACT+TGG + Chr4:37696380-37696399 None:intergenic 30.0%
TCAACGAAATTATCCATTAG+AGG - Chr4:37695589-37695608 MsG0480020263.01.T01:CDS 30.0%
TCAATGATTCACATTTAAGC+TGG - Chr4:37696234-37696253 MsG0480020263.01.T01:intron 30.0%
TGAGCGTTTGAAGAATATAA+GGG - Chr4:37695710-37695729 MsG0480020263.01.T01:CDS 30.0%
TGATCAACAACACAATCAAA+AGG + Chr4:37697394-37697413 None:intergenic 30.0%
TTATATTCTTCAAACGCTCA+TGG + Chr4:37695710-37695729 None:intergenic 30.0%
! AATGTGAATCATTGACTGTT+TGG + Chr4:37696229-37696248 None:intergenic 30.0%
! CCCCTGTAGAATATTTTATT+TGG - Chr4:37697088-37697107 MsG0480020263.01.T01:intron 30.0%
! TATGCTTGAATCCAACATTT+TGG - Chr4:37696645-37696664 MsG0480020263.01.T01:intron 30.0%
! TGAATATAGTGGGAAATCTT+TGG - Chr4:37695986-37696005 MsG0480020263.01.T01:CDS 30.0%
! TGGTTCTTTTTCTCAATTCT+TGG + Chr4:37696289-37696308 None:intergenic 30.0%
! TTTGAAAGTTTTGCCTCTAA+TGG + Chr4:37695605-37695624 None:intergenic 30.0%
! TTTGATTGTGTTGTTGATCA+GGG - Chr4:37697394-37697413 MsG0480020263.01.T01:CDS 30.0%
!! AGTTCTAAGATTAGAAACAG+TGG + Chr4:37696454-37696473 None:intergenic 30.0%
!! GTGTTGATTTCCTCTAATTT+AGG - Chr4:37694941-37694960 MsG0480020263.01.T01:CDS 30.0%
!! TTTTGATTGTGTTGTTGATC+AGG - Chr4:37697393-37697412 MsG0480020263.01.T01:CDS 30.0%
!!! CATGTTTTAGCCAATTTGTT+AGG - Chr4:37696851-37696870 MsG0480020263.01.T01:intron 30.0%
!!! TACTTTGCCTTATTTTAACC+TGG - Chr4:37696939-37696958 MsG0480020263.01.T01:intron 30.0%
!!! TAGTTTTGTTATTCCAAAGC+AGG + Chr4:37696988-37697007 None:intergenic 30.0%
AAAACATGAAATCCCACCAA+TGG + Chr4:37697516-37697535 None:intergenic 35.0%
AACATGAATGCATCATGACT+TGG + Chr4:37696797-37696816 None:intergenic 35.0%
AAGTCATGATGCATTCATGT+TGG - Chr4:37696796-37696815 MsG0480020263.01.T01:intron 35.0%
AATATTCTACAGGGGAAAAC+CGG + Chr4:37697083-37697102 None:intergenic 35.0%
AATGTTGTAGGTTGTTTGTG+TGG - Chr4:37694990-37695009 MsG0480020263.01.T01:CDS 35.0%
ACGTCATAGTCAATTCTGAT+GGG - Chr4:37695407-37695426 MsG0480020263.01.T01:intron 35.0%
ACTATGGTACGTAGTCTAAT+AGG + Chr4:37697192-37697211 None:intergenic 35.0%
AGTCATGATGCATTCATGTT+GGG - Chr4:37696797-37696816 MsG0480020263.01.T01:intron 35.0%
ATTCCTTTGTCAGTAAAGCA+AGG + Chr4:37696266-37696285 None:intergenic 35.0%
ATTGCAACCACCTAACAAAT+TGG + Chr4:37696864-37696883 None:intergenic 35.0%
CAATTGTGTTTGTTCTCAAC+AGG - Chr4:37696880-37696899 MsG0480020263.01.T01:intron 35.0%
CAGAAAATCTTAGACTTGTG+TGG - Chr4:37695944-37695963 MsG0480020263.01.T01:CDS 35.0%
CATGAAGCCAAATATACTGA+TGG - Chr4:37695323-37695342 MsG0480020263.01.T01:intron 35.0%
CCTGTAATATAGGTCATTTC+CGG - Chr4:37697061-37697080 MsG0480020263.01.T01:intron 35.0%
CGGAAATGACCTATATTACA+GGG + Chr4:37697063-37697082 None:intergenic 35.0%
CTATACAAAATGGCTAGAGT+AGG - Chr4:37696532-37696551 MsG0480020263.01.T01:intron 35.0%
CTTGCTTCCATCAGTATATT+TGG + Chr4:37695333-37695352 None:intergenic 35.0%
GGTGAGAAAAACAGAAAAGA+AGG + Chr4:37696096-37696115 None:intergenic 35.0%
GTGAACTAACCTCATATTGT+GGG - Chr4:37696022-37696041 MsG0480020263.01.T01:intron 35.0%
TATATGTCTTGTGGATACCT+CGG + Chr4:37696190-37696209 None:intergenic 35.0%
TATGTCAAACAACAGGTCAA+AGG - Chr4:37697457-37697476 MsG0480020263.01.T01:intron 35.0%
TCCATTCAACCCTAAATTAG+AGG + Chr4:37694954-37694973 None:intergenic 35.0%
TGAACTAACCTCATATTGTG+GGG - Chr4:37696023-37696042 MsG0480020263.01.T01:intron 35.0%
TTCTCAACAGGAATTTGAGA+AGG - Chr4:37696892-37696911 MsG0480020263.01.T01:intron 35.0%
! AAATCTTTGGAAGTGCAAGT+GGG - Chr4:37695999-37696018 MsG0480020263.01.T01:CDS 35.0%
! GATTTTCTTTCTGTTCTAGC+TGG + Chr4:37696493-37696512 None:intergenic 35.0%
! TCCTCTAATTTAGGGTTGAA+TGG - Chr4:37694950-37694969 MsG0480020263.01.T01:CDS 35.0%
! TTTAGGGTTGAATGGAAATG+AGG - Chr4:37694958-37694977 MsG0480020263.01.T01:CDS 35.0%
!! AAAGTACTGAGAGTTGTCTA+TGG + Chr4:37696925-37696944 None:intergenic 35.0%
!! AAGTACTGAGAGTTGTCTAT+GGG + Chr4:37696924-37696943 None:intergenic 35.0%
!! CACACAAGTCTAAGATTTTC+TGG + Chr4:37695946-37695965 None:intergenic 35.0%
!! CTTTGAGGTTATATGTCTTG+TGG + Chr4:37696199-37696218 None:intergenic 35.0%
!! GGGATTTCATGTTTTGTTCA+TGG - Chr4:37697521-37697540 MsG0480020263.01.T01:intron 35.0%
!!! GTGTTTTAGCCCTGTAATAT+AGG - Chr4:37697051-37697070 MsG0480020263.01.T01:intron 35.0%
!!! GTTTTAGCCAATTTGTTAGG+TGG - Chr4:37696854-37696873 MsG0480020263.01.T01:intron 35.0%
AACAGGTCAAAGGATTCTTG+TGG - Chr4:37697467-37697486 MsG0480020263.01.T01:intron 40.0%
AACGCTCATGGTCCTTAAAT+AGG + Chr4:37695698-37695717 None:intergenic 40.0%
ACAAAGGTTCAACGGTTGTT+TGG - Chr4:37695157-37695176 MsG0480020263.01.T01:intron 40.0%
AGAGGCAGAGATATATTACC+AGG + Chr4:37696960-37696979 None:intergenic 40.0%
AGGAGGATGGTTAATGTTGT+AGG - Chr4:37694978-37694997 MsG0480020263.01.T01:CDS 40.0%
AGGTTAAGCATTTGAAGGTG+TGG - Chr4:37696753-37696772 MsG0480020263.01.T01:intron 40.0%
ATCACTTTCTGTCCATTGGT+GGG - Chr4:37697501-37697520 MsG0480020263.01.T01:intron 40.0%
ATCTTAGACTTGTGTGGCTA+AGG - Chr4:37695950-37695969 MsG0480020263.01.T01:CDS 40.0%
CACGTCATAGTCAATTCTGA+TGG - Chr4:37695406-37695425 MsG0480020263.01.T01:intron 40.0%
CCGGAAATGACCTATATTAC+AGG + Chr4:37697064-37697083 None:intergenic 40.0%
CTGATGAAAGAACACTCTGA+AGG - Chr4:37695355-37695374 MsG0480020263.01.T01:intron 40.0%
GGCTGAAATAGCACAAAACA+AGG - Chr4:37696618-37696637 MsG0480020263.01.T01:intron 40.0%
GGTGAACTAACCTCATATTG+TGG - Chr4:37696021-37696040 MsG0480020263.01.T01:intron 40.0%
GTACCTTGCTTTACTGACAA+AGG - Chr4:37696260-37696279 MsG0480020263.01.T01:intron 40.0%
GTCATGATGCATTCATGTTG+GGG - Chr4:37696798-37696817 MsG0480020263.01.T01:intron 40.0%
TACAAAATGGCTAGAGTAGG+AGG - Chr4:37696535-37696554 MsG0480020263.01.T01:intron 40.0%
TATATGAAGTGGGACTGTGT+TGG + Chr4:37696427-37696446 None:intergenic 40.0%
TATGAGACTTGGAGAGAAGT+CGG + Chr4:37696369-37696388 None:intergenic 40.0%
TTGAATGGAAATGAGGAGGA+TGG - Chr4:37694965-37694984 MsG0480020263.01.T01:CDS 40.0%
TTGATTCACCCCACAATATG+AGG + Chr4:37696034-37696053 None:intergenic 40.0%
TTGCAACTTGAAAAACCAGC+TGG - Chr4:37696158-37696177 MsG0480020263.01.T01:intron 40.0%
TTGTAGGTTGTTTGTGTGGT+TGG - Chr4:37694994-37695013 MsG0480020263.01.T01:CDS 40.0%
! AATCTTTGGAAGTGCAAGTG+GGG - Chr4:37696000-37696019 MsG0480020263.01.T01:CDS 40.0%
! CTGTTTGGTCTTTGACTTTG+AGG + Chr4:37696214-37696233 None:intergenic 40.0%
! GAAATCTTTGGAAGTGCAAG+TGG - Chr4:37695998-37696017 MsG0480020263.01.T01:CDS 40.0%
! GATGGTATGGCTTTTGACAA+AGG - Chr4:37695141-37695160 MsG0480020263.01.T01:intron 40.0%
! GGCTTTTGACAAAGGTTCAA+CGG - Chr4:37695149-37695168 MsG0480020263.01.T01:intron 40.0%
! TTGTTATTCCAAAGCAGGAC+AGG + Chr4:37696983-37697002 None:intergenic 40.0%
!! ATTTTCTGGTCTCACACAAG+AGG + Chr4:37695932-37695951 None:intergenic 40.0%
ACCACGTGCAGAAACAAACA+AGG - Chr4:37695501-37695520 MsG0480020263.01.T01:intron 45.0%
AGGGTTGAATGGAAATGAGG+AGG - Chr4:37694961-37694980 MsG0480020263.01.T01:CDS 45.0%
ATTGTCCATGCTGGTGATAG+GGG - Chr4:37697433-37697452 MsG0480020263.01.T01:intron 45.0%
CACCAATGGACAGAAAGTGA+TGG + Chr4:37697502-37697521 None:intergenic 45.0%
CACCATCACTTTCTGTCCAT+TGG - Chr4:37697497-37697516 MsG0480020263.01.T01:intron 45.0%
CATCACTTTCTGTCCATTGG+TGG - Chr4:37697500-37697519 MsG0480020263.01.T01:intron 45.0%
CATTGTTACCACTGCTTCCA+TGG - Chr4:37697565-37697584 MsG0480020263.01.T01:CDS 45.0%
GATGCATTCATGTTGGGGTT+GGG - Chr4:37696803-37696822 MsG0480020263.01.T01:intron 45.0%
GATGTTGCAGCTGGTATTCT+TGG - Chr4:37696589-37696608 MsG0480020263.01.T01:intron 45.0%
GATTGTCCATGCTGGTGATA+GGG - Chr4:37697432-37697451 MsG0480020263.01.T01:intron 45.0%
GTTATCATGGATGTTGCAGC+TGG - Chr4:37696580-37696599 MsG0480020263.01.T01:intron 45.0%
GTTGTTGATCAGGGTTGTAG+TGG - Chr4:37697403-37697422 MsG0480020263.01.T01:intron 45.0%
TACTGAGAGTTGTCTATGGG+AGG + Chr4:37696921-37696940 None:intergenic 45.0%
TAGGGGCTATGTCAAACAAC+AGG - Chr4:37697450-37697469 MsG0480020263.01.T01:intron 45.0%
TGATGCATTCATGTTGGGGT+TGG - Chr4:37696802-37696821 MsG0480020263.01.T01:intron 45.0%
TGGTTCAGATGATGTGGGAA+TGG - Chr4:37695113-37695132 MsG0480020263.01.T01:intron 45.0%
! AACCAGCTTCTGAGAACATC+AGG + Chr4:37695098-37695117 None:intergenic 45.0%
! ACCAGCTTCTGAGAACATCA+GGG + Chr4:37695097-37695116 None:intergenic 45.0%
! AGAAGCTGGTTCAGATGATG+TGG - Chr4:37695107-37695126 MsG0480020263.01.T01:intron 45.0%
! CACTCTGAAGGACACATCAT+TGG - Chr4:37695367-37695386 MsG0480020263.01.T01:intron 45.0%
! GAAGCTGGTTCAGATGATGT+GGG - Chr4:37695108-37695127 MsG0480020263.01.T01:intron 45.0%
!! ACCTTGTTTGTTTCTGCACG+TGG + Chr4:37695505-37695524 None:intergenic 45.0%
AAACCAGCTGGTTATCACCG+AGG - Chr4:37696170-37696189 MsG0480020263.01.T01:intron 50.0%
AATGACAAGACGACTGCGTC+TGG - Chr4:37695045-37695064 MsG0480020263.01.T01:CDS 50.0%
AGCTGGTATTCTTGGCGTTG+AGG - Chr4:37696597-37696616 MsG0480020263.01.T01:intron 50.0%
ATACCTCGGTGATAACCAGC+TGG + Chr4:37696176-37696195 None:intergenic 50.0%
ATCAGGGTTGTAGTGGCTGT+TGG - Chr4:37697410-37697429 MsG0480020263.01.T01:intron 50.0%
ATTCCAAAGCAGGACAGGAG+AGG + Chr4:37696978-37696997 None:intergenic 50.0%
GATGTGGGAATGGCTTCTGA+TGG - Chr4:37695123-37695142 MsG0480020263.01.T01:intron 50.0%
GGATTGTCCATGCTGGTGAT+AGG - Chr4:37697431-37697450 MsG0480020263.01.T01:intron 50.0%
GGGAATGGCTTCTGATGGTA+TGG - Chr4:37695128-37695147 MsG0480020263.01.T01:intron 50.0%
! TTGGGTGCAGCAGTGCTATT+GGG - Chr4:37696821-37696840 MsG0480020263.01.T01:intron 50.0%
CATAGCCCCTATCACCAGCA+TGG + Chr4:37697441-37697460 None:intergenic 55.0%
GCCCTGATGTTCTCAGAAGC+TGG - Chr4:37695093-37695112 MsG0480020263.01.T01:CDS 55.0%
GGCTGTTGGATTGTCCATGC+TGG - Chr4:37697424-37697443 MsG0480020263.01.T01:intron 55.0%
GTTGGGTGCAGCAGTGCTAT+TGG - Chr4:37696820-37696839 MsG0480020263.01.T01:intron 55.0%
CTGCCTCTCCTGTCCTGCTT+TGG - Chr4:37696972-37696991 MsG0480020263.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr4 gene 37694935 37697592 37694935 ID=MsG0480020263.01;Name=MsG0480020263.01
Chr4 mRNA 37694935 37697592 37694935 ID=MsG0480020263.01.T01;Parent=MsG0480020263.01;Name=MsG0480020263.01.T01;_AED=0.40;_eAED=0.45;_QI=0|0|0|0.6|0.75|0.8|5|0|211
Chr4 exon 37697541 37697592 37697541 ID=MsG0480020263.01.T01:exon:7218;Parent=MsG0480020263.01.T01
Chr4 exon 37697365 37697418 37697365 ID=MsG0480020263.01.T01:exon:7219;Parent=MsG0480020263.01.T01
Chr4 exon 37695888 37696033 37695888 ID=MsG0480020263.01.T01:exon:7220;Parent=MsG0480020263.01.T01
Chr4 exon 37695567 37695772 37695567 ID=MsG0480020263.01.T01:exon:7221;Parent=MsG0480020263.01.T01
Chr4 exon 37694935 37695112 37694935 ID=MsG0480020263.01.T01:exon:7222;Parent=MsG0480020263.01.T01
Chr4 CDS 37697541 37697592 37697541 ID=MsG0480020263.01.T01:cds;Parent=MsG0480020263.01.T01
Chr4 CDS 37697365 37697418 37697365 ID=MsG0480020263.01.T01:cds;Parent=MsG0480020263.01.T01
Chr4 CDS 37695888 37696033 37695888 ID=MsG0480020263.01.T01:cds;Parent=MsG0480020263.01.T01
Chr4 CDS 37695567 37695772 37695567 ID=MsG0480020263.01.T01:cds;Parent=MsG0480020263.01.T01
Chr4 CDS 37694935 37695112 37694935 ID=MsG0480020263.01.T01:cds;Parent=MsG0480020263.01.T01
Gene Sequence

>MsG0480020263.01.T01

ATGACTGTGTTGATTTCCTCTAATTTAGGGTTGAATGGAAATGAGGAGGATGAAGCTGGTTCAGATGATGTGGGAATGGCTTCTGATGGTATGGCTTTTGACAAAGCTAGAACAGAAAGAAAATCCCTGAAATATTTGTGTTTTCTATACAAAATGGCTAGAGTAGGAGGCATTGTTGTTTGTCTCTTAATTGTTATCATGGATGTTGCAGCTGGTATTCTTGGCGTTGAGGCTGAAATAGCACAAAACAAGGTTAAGCATTTGAAGGTGTGGATATTTGAGTGTAGAGAACCAAGTCATGATGCATTCATGTTGGGGTTGGGTGCAGCAGTGCTATTGGGACTATCACATGTTTTAGCCAATTTGTTAGGTGGTTGCAATTGTGTTTGTTCTCAACAGGAATTTGAGAAGGCTTCCTCCCATAGACAACTCTCAGTACTTTGCCTTATTTTAACCTGGGTTGTAGTGGCTGTTGGATTGTCCATGCTGGTGATAGGGGCTATGTCAAACAACAGGTCAAAGGATTCTTGTGGTTTCTCACACCATCACTTTCTGTCCATTGGTGGGATTTCATGTTTTGTTCATGGTCTCTTCTCTGTTATATATTACATTGTTACCACTGCTTCCATGGATTAG

Protein sequence

>MsG0480020263.01.T01

MTVLISSNLGLNGNEEDEAGSDDVGMASDGMAFDKARTERKSLKYLCFLYKMARVGGIVVCLLIVIMDVAAGILGVEAEIAQNKVKHLKVWIFECREPSHDAFMLGLGAAVLLGLSHVLANLLGGCNCVCSQQEFEKASSHRQLSVLCLILTWVVVAVGLSMLVIGAMSNNRSKDSCGFSHHHFLSIGGISCFVHGLFSVIYYIVTTASMD*