AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280010868.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280010868.01.T01 MTR_2g093220 92.884 267 18 1 1 266 1 267 5.17e-162 451
MsG0280010868.01.T01 MTR_4g461080 54.510 255 67 10 13 245 2 229 5.00e-65 204
MsG0280010868.01.T01 MTR_3g091820 85.294 68 10 0 29 96 32 99 4.75e-38 135
MsG0280010868.01.T01 MTR_1g077600 63.736 91 29 2 8 94 7 97 3.97e-36 130
MsG0280010868.01.T01 MTR_1g077600 63.736 91 29 2 8 94 7 97 4.40e-36 130
MsG0280010868.01.T01 MTR_8g027295 62.626 99 23 3 23 116 9 98 5.52e-35 127
MsG0280010868.01.T01 MTR_2g096740 54.464 112 42 2 8 119 31 133 1.45e-34 126
MsG0280010868.01.T01 MTR_2g096740 54.464 112 42 2 8 119 46 148 1.91e-34 126
MsG0280010868.01.T01 MTR_3g090430 76.389 72 17 0 23 94 34 105 1.32e-33 124
MsG0280010868.01.T01 MTR_4g022370 51.938 129 40 2 7 126 62 177 3.43e-33 124
MsG0280010868.01.T01 MTR_4g063780 65.217 92 25 2 22 106 57 148 3.52e-33 123
MsG0280010868.01.T01 MTR_3g077750 54.074 135 49 5 11 140 29 155 3.55e-33 124
MsG0280010868.01.T01 MTR_8g068210 60.465 86 34 0 29 114 21 106 1.74e-31 119
MsG0280010868.01.T01 MTR_8g479350 64.198 81 29 0 37 117 65 145 2.88e-31 119
MsG0280010868.01.T01 MTR_4g088580 70.270 74 22 0 42 115 57 130 4.05e-31 119
MsG0280010868.01.T01 MTR_1g056810 90.741 54 5 0 41 94 13 66 9.87e-31 116
MsG0280010868.01.T01 MTR_5g031440 83.636 55 9 0 36 90 39 93 1.12e-29 114
MsG0280010868.01.T01 MTR_7g059400 67.123 73 24 0 22 94 58 130 1.29e-29 114
MsG0280010868.01.T01 MTR_8g079060 67.568 74 23 1 24 96 12 85 4.33e-29 110
MsG0280010868.01.T01 MTR_2g014060 79.310 58 9 1 34 91 22 76 9.85e-29 112
MsG0280010868.01.T01 MTR_7g024670 73.846 65 17 0 39 103 76 140 2.77e-28 111
MsG0280010868.01.T01 MTR_3g435480 67.123 73 23 1 26 98 123 194 1.92e-27 110
MsG0280010868.01.T01 MTR_8g015840 68.056 72 22 1 28 98 8 79 2.62e-27 105
MsG0280010868.01.T01 MTR_4g109980 79.245 53 11 0 38 90 38 90 5.51e-27 107
MsG0280010868.01.T01 MTR_2g013370 77.193 57 12 1 38 94 44 99 1.24e-26 105
MsG0280010868.01.T01 MTR_2g059540 86.000 50 7 0 39 88 30 79 1.65e-26 103
MsG0280010868.01.T01 MTR_4g089095 78.947 57 11 1 38 94 48 103 1.66e-26 105
MsG0280010868.01.T01 MTR_4g089095 78.947 57 11 1 38 94 14 69 2.08e-26 104
MsG0280010868.01.T01 MTR_7g010950 58.333 84 27 1 21 96 108 191 3.40e-26 107
MsG0280010868.01.T01 MTR_5g041420 65.217 69 23 1 28 96 127 194 4.60e-26 104
MsG0280010868.01.T01 MTR_2g014170 84.000 50 8 0 39 88 44 93 4.80e-26 104
MsG0280010868.01.T01 MTR_8g044220 61.429 70 26 1 26 95 105 173 3.01e-25 103
MsG0280010868.01.T01 MTR_4g082060 62.857 70 26 0 29 98 111 180 4.27e-25 103
MsG0280010868.01.T01 MTR_6g027460 42.742 124 67 2 15 138 72 191 1.44e-24 101
MsG0280010868.01.T01 MTR_6g012450 66.129 62 21 0 35 96 131 192 2.04e-24 102
MsG0280010868.01.T01 MTR_6g027450 51.250 80 38 1 15 94 65 143 2.40e-24 100
MsG0280010868.01.T01 MTR_7g086780 66.102 59 20 0 35 93 94 152 2.51e-24 101
MsG0280010868.01.T01 MTR_2g016030 68.421 57 18 0 37 93 44 100 1.35e-23 94.0
MsG0280010868.01.T01 MTR_5g041380 46.957 115 52 3 8 115 96 208 3.11e-23 97.4
MsG0280010868.01.T01 MTR_5g041400 60.811 74 29 0 36 109 115 188 2.36e-22 95.1
MsG0280010868.01.T01 MTR_5g041530 49.451 91 40 2 8 93 104 193 3.42e-21 92.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280010868.01.T01 AT5G60200 54.422 147 51 4 26 160 33 175 4.06e-43 147
MsG0280010868.01.T01 AT3G45610 48.684 152 58 4 11 145 1 149 7.43e-39 136
MsG0280010868.01.T01 AT2G28510 65.179 112 30 4 38 142 46 155 6.37e-36 130
MsG0280010868.01.T01 AT4G24060 83.333 66 11 0 29 94 42 107 7.90e-36 130
MsG0280010868.01.T01 AT3G55370 64.211 95 28 2 12 105 52 141 8.51e-35 127
MsG0280010868.01.T01 AT3G55370 64.211 95 28 2 12 105 97 186 8.84e-35 129
MsG0280010868.01.T01 AT3G55370 64.211 95 28 2 12 105 52 141 1.16e-34 128
MsG0280010868.01.T01 AT3G61850 82.812 64 11 0 33 96 55 118 8.99e-34 124
MsG0280010868.01.T01 AT3G61850 82.812 64 11 0 33 96 55 118 8.99e-34 124
MsG0280010868.01.T01 AT3G61850 82.812 64 11 0 33 96 67 130 1.02e-33 124
MsG0280010868.01.T01 AT3G61850 82.812 64 11 0 33 96 55 118 1.47e-33 124
MsG0280010868.01.T01 AT3G61850 82.812 64 11 0 33 96 67 130 1.54e-33 124
MsG0280010868.01.T01 AT1G64620 46.067 178 87 3 29 198 38 214 5.96e-33 123
MsG0280010868.01.T01 AT2G37590 68.919 74 23 0 22 95 71 144 1.48e-32 122
MsG0280010868.01.T01 AT5G02460 81.967 61 11 0 34 94 89 149 5.04e-32 122
MsG0280010868.01.T01 AT5G60850 76.056 71 13 1 38 104 49 119 8.19e-32 119
MsG0280010868.01.T01 AT5G65590 66.265 83 24 1 23 101 20 102 3.97e-31 117
MsG0280010868.01.T01 AT3G52440 80.000 65 11 1 37 101 22 84 1.05e-30 115
MsG0280010868.01.T01 AT3G52440 80.000 65 11 1 37 101 41 103 1.36e-30 115
MsG0280010868.01.T01 AT2G46590 61.017 118 40 3 29 142 59 174 2.74e-30 116
MsG0280010868.01.T01 AT2G46590 61.017 118 40 3 29 142 71 186 3.05e-30 116
MsG0280010868.01.T01 AT1G51700 57.895 95 36 2 20 113 16 107 3.18e-30 112
MsG0280010868.01.T01 AT4G00940 80.000 60 12 0 35 94 63 122 5.44e-30 114
MsG0280010868.01.T01 AT4G00940 80.000 60 12 0 35 94 63 122 5.44e-30 114
MsG0280010868.01.T01 AT4G00940 80.000 60 12 0 35 94 63 122 5.44e-30 114
MsG0280010868.01.T01 AT1G07640 56.322 87 37 1 9 94 45 131 8.32e-30 114
MsG0280010868.01.T01 AT1G07640 56.322 87 37 1 9 94 53 139 9.86e-30 114
MsG0280010868.01.T01 AT2G28810 80.357 56 11 0 36 91 73 128 1.15e-29 114
MsG0280010868.01.T01 AT2G28810 80.357 56 11 0 36 91 90 145 1.68e-29 114
MsG0280010868.01.T01 AT1G21340 82.456 57 10 0 39 95 37 93 1.81e-29 112
MsG0280010868.01.T01 AT1G07640 65.333 75 25 1 21 94 1 75 3.68e-29 111
MsG0280010868.01.T01 AT5G62940 75.410 61 15 0 30 90 63 123 6.61e-29 113
MsG0280010868.01.T01 AT1G28310 81.818 55 10 0 40 94 27 81 7.15e-28 109
MsG0280010868.01.T01 AT1G28310 81.818 55 10 0 40 94 51 105 1.03e-27 109
MsG0280010868.01.T01 AT3G21270 84.906 53 8 0 40 92 29 81 2.13e-27 105
MsG0280010868.01.T01 AT5G66940 67.606 71 22 1 32 102 25 94 2.35e-27 105
MsG0280010868.01.T01 AT4G21050 66.667 69 21 1 33 101 19 85 5.10e-27 104
MsG0280010868.01.T01 AT5G62430 54.945 91 40 1 26 115 39 129 5.36e-27 106
MsG0280010868.01.T01 AT4G38000 67.692 65 20 1 30 93 31 95 5.73e-27 105
MsG0280010868.01.T01 AT1G47655 77.193 57 13 0 32 88 21 77 8.52e-27 103
MsG0280010868.01.T01 AT3G50410 70.000 60 18 0 37 96 27 86 3.26e-26 103
MsG0280010868.01.T01 AT3G47500 69.355 62 19 0 35 96 105 166 1.89e-25 104
MsG0280010868.01.T01 AT5G39660 61.538 78 24 2 22 99 124 195 3.28e-25 103
MsG0280010868.01.T01 AT5G39660 61.538 78 24 2 22 99 124 195 3.28e-25 103
MsG0280010868.01.T01 AT5G39660 61.538 78 24 2 22 99 124 195 3.28e-25 103
MsG0280010868.01.T01 AT1G69570 67.797 59 19 0 35 93 127 185 2.15e-24 101
MsG0280010868.01.T01 AT1G26790 54.054 74 34 0 20 93 91 164 3.14e-24 100
MsG0280010868.01.T01 AT4G21080 46.667 105 55 1 17 120 1 105 5.39e-24 97.4
MsG0280010868.01.T01 AT2G34140 64.407 59 21 0 35 93 53 111 6.87e-24 95.1
MsG0280010868.01.T01 AT1G29160 64.407 59 21 0 35 93 57 115 1.36e-23 94.4
MsG0280010868.01.T01 AT4G21040 49.057 106 51 3 17 120 1 105 7.83e-23 94.0
MsG0280010868.01.T01 AT4G21030 42.157 102 55 2 17 117 1 99 2.39e-15 72.8

Find 87 sgRNAs with CRISPR-Local

Find 143 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACTCCAACTTCATTGATTT+TGG 0.102202 2:-76127899 None:intergenic
AACCATAAACCATGGATTTA+TGG 0.149923 2:+76127119 MsG0280010868.01.T01:CDS
GCTTGTTCTGGTTGAGGTTT+TGG 0.170758 2:-76126715 None:intergenic
ATCCATAAATCCATGGTTTA+TGG 0.190178 2:-76127121 None:intergenic
TTCCATTACCAACCTCATTT+TGG 0.230948 2:+76125646 None:intergenic
ACGGTTCTAAATTGCAATTT+TGG 0.258946 2:+76127518 MsG0280010868.01.T01:three_prime_UTR
TTAATAGAGATTGATTTATC+TGG 0.261461 2:+76127727 MsG0280010868.01.T01:three_prime_UTR
AGGCATTGTGATCGCAATTA+TGG 0.276615 2:-76127596 None:intergenic
GATTCATTCATCTTATTGTT+TGG 0.284874 2:+76125790 MsG0280010868.01.T01:five_prime_UTR
ATTCCTTAGGGTTCCTCCTT+TGG 0.285324 2:-76126845 None:intergenic
TCAATTCTCTTAAGTAGTTT+TGG 0.289809 2:+76127703 MsG0280010868.01.T01:three_prime_UTR
ATTAGAAGTGGATTATTTCT+TGG 0.296220 2:+76127147 MsG0280010868.01.T01:CDS
GGACAGTTCAAAGCTTGTTC+TGG 0.303186 2:-76126727 None:intergenic
GAGATTGATTTATCTGGAAT+TGG 0.314042 2:+76127733 MsG0280010868.01.T01:three_prime_UTR
GTTGTTATAGTAACAGAATT+TGG 0.321643 2:-76126770 None:intergenic
GCAAGACCAAGTTGGAATAA+TGG 0.324229 2:+76127433 MsG0280010868.01.T01:three_prime_UTR
GAATGAGGGAGATTGTTAAA+TGG 0.326085 2:-76126967 None:intergenic
GATCATGATGCTTCAAATCT+AGG 0.329150 2:+76127072 MsG0280010868.01.T01:CDS
GCTTCAAATCTAGGAAATTC+AGG 0.333482 2:+76127081 MsG0280010868.01.T01:CDS
AGTGGATTATTTCTTGGAAA+TGG 0.336042 2:+76127153 MsG0280010868.01.T01:CDS
ATGTATGGTGTGTATGGAAA+TGG 0.354795 2:+76127204 MsG0280010868.01.T01:CDS
TGGTGGCAAACATACATATC+TGG 0.358027 2:-76127879 None:intergenic
GCAAATCTTGTAGAAGGTAT+TGG 0.358390 2:+76126821 MsG0280010868.01.T01:CDS
CAAGATTTGCAGAAATATCT+TGG 0.375372 2:-76126808 None:intergenic
ATTGTTAATTTCTTGATCAT+AGG 0.377525 2:-76127301 None:intergenic
AAAGCAATCATGTGGACAAA+TGG 0.379363 2:+76127041 MsG0280010868.01.T01:CDS
ATTTCTGCAAATCTTGTAGA+AGG 0.388906 2:+76126815 MsG0280010868.01.T01:CDS
CATTCATCTTATTGTTTGGA+TGG 0.393564 2:+76125794 MsG0280010868.01.T01:exon
TCATCAATGGAAAACATGTT+AGG 0.412061 2:+76126664 MsG0280010868.01.T01:CDS
AATGAGGGAGATTGTTAAAT+GGG 0.423268 2:-76126966 None:intergenic
TTGTTAATTTCTTGATCATA+GGG 0.429595 2:-76127300 None:intergenic
TTGCGATCACAATGCCTTTG+CGG 0.436397 2:+76127602 MsG0280010868.01.T01:three_prime_UTR
CAGAATATGTATGGTGTGTA+TGG 0.444454 2:+76127198 MsG0280010868.01.T01:CDS
TTCAAAGCTTGTTCTGGTTG+AGG 0.444926 2:-76126721 None:intergenic
CACCAACAGGAACATTCCTT+AGG 0.445109 2:-76126858 None:intergenic
TTGTTAAATGGGCTGAGATT+TGG 0.449385 2:-76126955 None:intergenic
TGTATGGTGTGTATGGAAAT+GGG 0.450678 2:+76127205 MsG0280010868.01.T01:CDS
AAGCAATCATGTGGACAAAT+GGG 0.452916 2:+76127042 MsG0280010868.01.T01:CDS
TAATGCTAATGCAAAATCAT+TGG 0.457564 2:-76127007 None:intergenic
TAGAATCAAAAGCTATATTA+CGG 0.458186 2:+76127499 MsG0280010868.01.T01:three_prime_UTR
TCCTTCTTGTGGACAACCTC+AGG 0.458211 2:+76125818 MsG0280010868.01.T01:CDS
GTGTTGGTTGAGTTGCATCT+TGG 0.458480 2:-76126748 None:intergenic
AATAATGTTCAGAATATGTA+TGG 0.460682 2:+76127189 MsG0280010868.01.T01:CDS
TTTCTGCATCCACCACCAAC+AGG 0.469608 2:-76126871 None:intergenic
GCCACCAAAATCAATGAAGT+TGG 0.480304 2:+76127895 MsG0280010868.01.T01:three_prime_UTR
ATGCAAATAACAATGCTTGT+GGG 0.493320 2:+76127256 MsG0280010868.01.T01:CDS
CGTTACGACTCTTGATATTG+TGG 0.494684 2:+76127544 MsG0280010868.01.T01:three_prime_UTR
AATGTCGAGCCAATCATCAA+TGG 0.508256 2:+76126651 MsG0280010868.01.T01:CDS
TGGGTTTCCAGGCCCGCTAA+AGG 0.510143 2:+76127381 MsG0280010868.01.T01:CDS
GACAATGGTGAAGTAAATAG+TGG 0.512707 2:+76127228 MsG0280010868.01.T01:CDS
AGGAATGTTCCTGTTGGTGG+TGG 0.512948 2:+76126862 MsG0280010868.01.T01:CDS
TTTATGGATGCAATTAGAAG+TGG 0.515360 2:+76127135 MsG0280010868.01.T01:CDS
CTAAGGAATGTTCCTGTTGG+TGG 0.527080 2:+76126859 MsG0280010868.01.T01:CDS
ATAGTAACAGAATTTGGTGT+TGG 0.529356 2:-76126764 None:intergenic
TAATTGCATCCATAAATCCA+TGG 0.534717 2:-76127128 None:intergenic
GTTTCACATCTCCTTGGCAA+GGG 0.535336 2:+76127455 MsG0280010868.01.T01:three_prime_UTR
GTTTGGATGGATCCTTCTTG+TGG 0.537133 2:+76125807 MsG0280010868.01.T01:exon
ACCAACAGGAACATTCCTTA+GGG 0.541748 2:-76126857 None:intergenic
GGTTTCACATCTCCTTGGCA+AGG 0.542507 2:+76127454 MsG0280010868.01.T01:three_prime_UTR
AATGCAAATAACAATGCTTG+TGG 0.543604 2:+76127255 MsG0280010868.01.T01:CDS
GTGCTTGGAGTGAAACTGAA+TGG 0.547945 2:-76125746 None:intergenic
ATAATGGTTTCACATCTCCT+TGG 0.549531 2:+76127449 MsG0280010868.01.T01:three_prime_UTR
TATGATCATAAGATGAATGA+GGG 0.553710 2:-76126981 None:intergenic
AAATTGTGTAATTTCCGCAA+AGG 0.554252 2:-76127616 None:intergenic
GTGAAACCATTATTCCAACT+TGG 0.559949 2:-76127439 None:intergenic
AGCAAGAAATGTGCAGTGGA+AGG 0.565157 2:+76127328 MsG0280010868.01.T01:CDS
TTATGATCATAAGATGAATG+AGG 0.565287 2:-76126982 None:intergenic
TTGAATCTGCAAGACCAAGT+TGG 0.568555 2:+76127425 MsG0280010868.01.T01:three_prime_UTR
ACCTGAGGTTGTCCACAAGA+AGG 0.573402 2:-76125819 None:intergenic
ACCCTAAGGAATGTTCCTGT+TGG 0.579058 2:+76126856 MsG0280010868.01.T01:CDS
CATCATCATCATCTTCAAAG+AGG 0.581905 2:+76126911 MsG0280010868.01.T01:CDS
TGCAAATAACAATGCTTGTG+GGG 0.582187 2:+76127257 MsG0280010868.01.T01:CDS
TGTAGAAGGTATTGGACCAA+AGG 0.585230 2:+76126829 MsG0280010868.01.T01:CDS
TGCTTGGAGTGAAACTGAAT+GGG 0.586484 2:-76125745 None:intergenic
CTCTTTGAAGATGATGATGA+TGG 0.589822 2:-76126910 None:intergenic
GGACCAAAGGAGGAACCCTA+AGG 0.594931 2:+76126842 MsG0280010868.01.T01:CDS
GCAAGAAATGTGCAGTGGAA+GGG 0.598256 2:+76127329 MsG0280010868.01.T01:CDS
GTGTATGGAAATGGGGACAA+TGG 0.598902 2:+76127213 MsG0280010868.01.T01:CDS
AATCATTCAACCATAAACCA+TGG 0.606118 2:+76127111 MsG0280010868.01.T01:CDS
AGAAGGTATTGGACCAAAGG+AGG 0.622045 2:+76126832 MsG0280010868.01.T01:CDS
CTATGAAGAAGCCCTTGCCA+AGG 0.626241 2:-76127466 None:intergenic
GTATGGTGTGTATGGAAATG+GGG 0.629075 2:+76127206 MsG0280010868.01.T01:CDS
TGGTAAAATGCAGACAAATG+CGG 0.631480 2:+76127564 MsG0280010868.01.T01:three_prime_UTR
AGGCTTCAAAAGCAATCATG+TGG 0.635965 2:+76127033 MsG0280010868.01.T01:CDS
GTTTCCAGGCCCGCTAAAGG+AGG 0.637650 2:+76127384 MsG0280010868.01.T01:CDS
GAAAATAATACAAACAAACA+AGG 0.669161 2:-76127773 None:intergenic
GTGAAGCAAGAAATGTGCAG+TGG 0.683660 2:+76127324 MsG0280010868.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAATTAAAGTACTAAAAT+TGG + Chr2:76126536-76126555 MsG0280010868.01.T01:intron 10.0%
!! AATTATACACAAAATACAAT+TGG - Chr2:76126565-76126584 None:intergenic 15.0%
!!! AGAGACAAATTTTATTTTTT+TGG - Chr2:76126498-76126517 None:intergenic 15.0%
!!! TTAATTTTAACATTTAGCAA+CGG - Chr2:76126525-76126544 None:intergenic 15.0%
!!! TTGTATTTTGTGTATAATTT+TGG + Chr2:76126566-76126585 MsG0280010868.01.T01:intron 15.0%
!! AATAATGTTCAGAATATGTA+TGG + Chr2:76127189-76127208 MsG0280010868.01.T01:CDS 20.0%
!! AATTAGATATATAGAAGACA+TGG - Chr2:76126129-76126148 None:intergenic 20.0%
!! AGTTGAATCAAAGTTATAAT+AGG - Chr2:76126454-76126473 None:intergenic 20.0%
!! ATTGTTAATTTCTTGATCAT+AGG - Chr2:76127304-76127323 None:intergenic 20.0%
!! GAAAATAATACAAACAAACA+AGG - Chr2:76127776-76127795 None:intergenic 20.0%
!! TAGAATCAAAAGCTATATTA+CGG + Chr2:76127499-76127518 MsG0280010868.01.T01:three_prime_UTR 20.0%
!! TTGTTAATTTCTTGATCATA+GGG - Chr2:76127303-76127322 None:intergenic 20.0%
!!! AATATTATGTTTGAAGTTTG+AGG + Chr2:76125914-76125933 MsG0280010868.01.T01:intron 20.0%
!!! ATATTATGTTTGAAGTTTGA+GGG + Chr2:76125915-76125934 MsG0280010868.01.T01:intron 20.0%
!!! CAATATATTTTGTGTAAAGA+TGG - Chr2:76126010-76126029 None:intergenic 20.0%
!!! TCATATTTTAGTCAAACATT+AGG - Chr2:76127664-76127683 None:intergenic 20.0%
!!! TTAATAGAGATTGATTTATC+TGG + Chr2:76127727-76127746 MsG0280010868.01.T01:three_prime_UTR 20.0%
!!! TTAGTGAAAGTAAAAGTTTT+TGG + Chr2:76127358-76127377 MsG0280010868.01.T01:CDS 20.0%
!!! TTGCAATTTATGTATTTTGT+TGG - Chr2:76126235-76126254 None:intergenic 20.0%
! AAAAAATGTGACATCTTAGA+GGG - Chr2:76127814-76127833 None:intergenic 25.0%
! AACAGTATAAAAGATGAAGA+TGG - Chr2:76126203-76126222 None:intergenic 25.0%
! ACAGTATAAAAGATGAAGAT+GGG - Chr2:76126202-76126221 None:intergenic 25.0%
! GAGTAATGTGTATTTGTATA+TGG + Chr2:76126413-76126432 MsG0280010868.01.T01:intron 25.0%
! GATTCATTCATCTTATTGTT+TGG + Chr2:76125790-76125809 MsG0280010868.01.T01:five_prime_UTR 25.0%
! GTTGTTATAGTAACAGAATT+TGG - Chr2:76126773-76126792 None:intergenic 25.0%
! TAATGCTAATGCAAAATCAT+TGG - Chr2:76127010-76127029 None:intergenic 25.0%
! TATACTTAAACTGCTCTTAT+GGG - Chr2:76125970-76125989 None:intergenic 25.0%
! TATGATCATAAGATGAATGA+GGG - Chr2:76126984-76127003 None:intergenic 25.0%
! TTATACTTAAACTGCTCTTA+TGG - Chr2:76125971-76125990 None:intergenic 25.0%
! TTATGATCATAAGATGAATG+AGG - Chr2:76126985-76127004 None:intergenic 25.0%
!! AATTTATATGTCTTCTAGCT+TGG + Chr2:76126145-76126164 MsG0280010868.01.T01:intron 25.0%
!! TCAATTCTCTTAAGTAGTTT+TGG + Chr2:76127703-76127722 MsG0280010868.01.T01:three_prime_UTR 25.0%
!! TTTTATTAGATTTGCACTCA+TGG + Chr2:76126606-76126625 MsG0280010868.01.T01:intron 25.0%
!!! AGCTTTTGATTCTACATTAA+GGG - Chr2:76127493-76127512 None:intergenic 25.0%
!!! ATTAGAAGTGGATTATTTCT+TGG + Chr2:76127147-76127166 MsG0280010868.01.T01:CDS 25.0%
!!! TAGCTTTTGATTCTACATTA+AGG - Chr2:76127494-76127513 None:intergenic 25.0%
!!! TGAAAGTAAAAGTTTTTGGT+GGG + Chr2:76127362-76127381 MsG0280010868.01.T01:CDS 25.0%
AAATTGTGTAATTTCCGCAA+AGG - Chr2:76127619-76127638 None:intergenic 30.0%
AACCATAAACCATGGATTTA+TGG + Chr2:76127119-76127138 MsG0280010868.01.T01:CDS 30.0%
AATCATTCAACCATAAACCA+TGG + Chr2:76127111-76127130 MsG0280010868.01.T01:CDS 30.0%
AATGAGGGAGATTGTTAAAT+GGG - Chr2:76126969-76126988 None:intergenic 30.0%
AATGCAAATAACAATGCTTG+TGG + Chr2:76127255-76127274 MsG0280010868.01.T01:CDS 30.0%
AGAGTGAAAAATCCAAAATG+AGG - Chr2:76125661-76125680 None:intergenic 30.0%
ATCCATAAATCCATGGTTTA+TGG - Chr2:76127124-76127143 None:intergenic 30.0%
ATGCAAATAACAATGCTTGT+GGG + Chr2:76127256-76127275 MsG0280010868.01.T01:CDS 30.0%
ATGGGAAAAAAGAAGAAGAA+AGG - Chr2:76125730-76125749 None:intergenic 30.0%
ATTTCTGCAAATCTTGTAGA+AGG + Chr2:76126815-76126834 MsG0280010868.01.T01:CDS 30.0%
CAAAAAATGTGACATCTTAG+AGG - Chr2:76127815-76127834 None:intergenic 30.0%
CAAGATTTGCAGAAATATCT+TGG - Chr2:76126811-76126830 None:intergenic 30.0%
CATTCATCTTATTGTTTGGA+TGG + Chr2:76125794-76125813 MsG0280010868.01.T01:exon 30.0%
CTAAAGGAGGAAAAAAACAT+GGG + Chr2:76127397-76127416 MsG0280010868.01.T01:CDS 30.0%
TAATTGCATCCATAAATCCA+TGG - Chr2:76127131-76127150 None:intergenic 30.0%
TACTCACACAACAAAAGTTA+GGG - Chr2:76126398-76126417 None:intergenic 30.0%
TAGAGGGACTAAAAAAAAGA+GGG - Chr2:76127798-76127817 None:intergenic 30.0%
TAGCTTGGAAATTGAAGTTA+GGG + Chr2:76126160-76126179 MsG0280010868.01.T01:intron 30.0%
TCATCAATGGAAAACATGTT+AGG + Chr2:76126664-76126683 MsG0280010868.01.T01:CDS 30.0%
TGAAAAATCCAAAATGAGGT+TGG - Chr2:76125657-76125676 None:intergenic 30.0%
TGGGAAAAAAGAAGAAGAAA+GGG - Chr2:76125729-76125748 None:intergenic 30.0%
TTACTCACACAACAAAAGTT+AGG - Chr2:76126399-76126418 None:intergenic 30.0%
TTAGAGGGACTAAAAAAAAG+AGG - Chr2:76127799-76127818 None:intergenic 30.0%
TTTATGGATGCAATTAGAAG+TGG + Chr2:76127135-76127154 MsG0280010868.01.T01:CDS 30.0%
! ATTTTGCATTAGCATTAGCT+AGG + Chr2:76127013-76127032 MsG0280010868.01.T01:CDS 30.0%
! GAAGGTATATACTAGTACTT+AGG - Chr2:76126269-76126288 None:intergenic 30.0%
! GAGATTGATTTATCTGGAAT+TGG + Chr2:76127733-76127752 MsG0280010868.01.T01:three_prime_UTR 30.0%
!! ACATGTTTTCCATTGATGAT+TGG - Chr2:76126663-76126682 None:intergenic 30.0%
!! AGTGGATTATTTCTTGGAAA+TGG + Chr2:76127153-76127172 MsG0280010868.01.T01:CDS 30.0%
!! ATAGTAACAGAATTTGGTGT+TGG - Chr2:76126767-76126786 None:intergenic 30.0%
!! GTGAAAGTAAAAGTTTTTGG+TGG + Chr2:76127361-76127380 MsG0280010868.01.T01:CDS 30.0%
!!! ACGGTTCTAAATTGCAATTT+TGG + Chr2:76127518-76127537 MsG0280010868.01.T01:three_prime_UTR 30.0%
!!! AGTAGCACTTTTTTTGAAGA+AGG - Chr2:76126287-76126306 None:intergenic 30.0%
!!! ATGTTTTTTTCCTCCTTTAG+CGG - Chr2:76127397-76127416 None:intergenic 30.0%
!!! CGACTGTCTTGTTTTAATAT+TGG + Chr2:76127837-76127856 MsG0280010868.01.T01:three_prime_UTR 30.0%
AAAATCCAAAATGAGGTTGG+TGG - Chr2:76125654-76125673 None:intergenic 35.0%
AAAGCAATCATGTGGACAAA+TGG + Chr2:76127041-76127060 MsG0280010868.01.T01:CDS 35.0%
AAGCAATCATGTGGACAAAT+GGG + Chr2:76127042-76127061 MsG0280010868.01.T01:CDS 35.0%
ATAATGGTTTCACATCTCCT+TGG + Chr2:76127449-76127468 MsG0280010868.01.T01:three_prime_UTR 35.0%
ATGTATGGTGTGTATGGAAA+TGG + Chr2:76127204-76127223 MsG0280010868.01.T01:CDS 35.0%
CAGAATATGTATGGTGTGTA+TGG + Chr2:76127198-76127217 MsG0280010868.01.T01:CDS 35.0%
CATCATCATCATCTTCAAAG+AGG + Chr2:76126911-76126930 MsG0280010868.01.T01:CDS 35.0%
CTAGCTTGGAAATTGAAGTT+AGG + Chr2:76126159-76126178 MsG0280010868.01.T01:intron 35.0%
GAAGAATATGTTAGCTAGCA+AGG - Chr2:76125878-76125897 None:intergenic 35.0%
GAATGAGGGAGATTGTTAAA+TGG - Chr2:76126970-76126989 None:intergenic 35.0%
GACAATGGTGAAGTAAATAG+TGG + Chr2:76127228-76127247 MsG0280010868.01.T01:CDS 35.0%
GATCATGATGCTTCAAATCT+AGG + Chr2:76127072-76127091 MsG0280010868.01.T01:CDS 35.0%
GCTAAAGGAGGAAAAAAACA+TGG + Chr2:76127396-76127415 MsG0280010868.01.T01:CDS 35.0%
GCTAGCTAACATATTCTTCA+TGG + Chr2:76125879-76125898 MsG0280010868.01.T01:intron 35.0%
GCTTCAAATCTAGGAAATTC+AGG + Chr2:76127081-76127100 MsG0280010868.01.T01:CDS 35.0%
GGGAAAAAAGAAGAAGAAAG+GGG - Chr2:76125728-76125747 None:intergenic 35.0%
GTGAAACCATTATTCCAACT+TGG - Chr2:76127442-76127461 None:intergenic 35.0%
TGCAAATAACAATGCTTGTG+GGG + Chr2:76127257-76127276 MsG0280010868.01.T01:CDS 35.0%
TGGTAAAATGCAGACAAATG+CGG + Chr2:76127564-76127583 MsG0280010868.01.T01:three_prime_UTR 35.0%
TGTATGGTGTGTATGGAAAT+GGG + Chr2:76127205-76127224 MsG0280010868.01.T01:CDS 35.0%
! CTCTTTGAAGATGATGATGA+TGG - Chr2:76126913-76126932 None:intergenic 35.0%
! GCAAATCTTGTAGAAGGTAT+TGG + Chr2:76126821-76126840 MsG0280010868.01.T01:CDS 35.0%
!! CTAGTACAAGTTTTCAAGAG+TGG + Chr2:76126305-76126324 MsG0280010868.01.T01:intron 35.0%
!! TTGTTAAATGGGCTGAGATT+TGG - Chr2:76126958-76126977 None:intergenic 35.0%
!!! AACTTTGTTTTGTGTGTGCT+TGG - Chr2:76125764-76125783 None:intergenic 35.0%
!!! CACTCCAACTTCATTGATTT+TGG - Chr2:76127902-76127921 None:intergenic 35.0%
!!! TCCAACTTCATTGATTTTGG+TGG - Chr2:76127899-76127918 None:intergenic 35.0%
!!! TGTTTTTTTCCTCCTTTAGC+GGG - Chr2:76127396-76127415 None:intergenic 35.0%
AATGTCGAGCCAATCATCAA+TGG + Chr2:76126651-76126670 MsG0280010868.01.T01:CDS 40.0%
ACCAACAGGAACATTCCTTA+GGG - Chr2:76126860-76126879 None:intergenic 40.0%
AGGCTTCAAAAGCAATCATG+TGG + Chr2:76127033-76127052 MsG0280010868.01.T01:CDS 40.0%
CGTTACGACTCTTGATATTG+TGG + Chr2:76127544-76127563 MsG0280010868.01.T01:three_prime_UTR 40.0%
GCCACCAAAATCAATGAAGT+TGG + Chr2:76127895-76127914 MsG0280010868.01.T01:three_prime_UTR 40.0%
GTATGGTGTGTATGGAAATG+GGG + Chr2:76127206-76127225 MsG0280010868.01.T01:CDS 40.0%
TGCTTGGAGTGAAACTGAAT+GGG - Chr2:76125748-76125767 None:intergenic 40.0%
TGGTGGCAAACATACATATC+TGG - Chr2:76127882-76127901 None:intergenic 40.0%
TTGAATCTGCAAGACCAAGT+TGG + Chr2:76127425-76127444 MsG0280010868.01.T01:three_prime_UTR 40.0%
! AGGCATTGTGATCGCAATTA+TGG - Chr2:76127599-76127618 None:intergenic 40.0%
! GCAAGACCAAGTTGGAATAA+TGG + Chr2:76127433-76127452 MsG0280010868.01.T01:three_prime_UTR 40.0%
! TTCAAAGCTTGTTCTGGTTG+AGG - Chr2:76126724-76126743 None:intergenic 40.0%
!! TGTAGAAGGTATTGGACCAA+AGG + Chr2:76126829-76126848 MsG0280010868.01.T01:CDS 40.0%
!!! AAAGTTTTTGGTGGGTTTCC+AGG + Chr2:76127370-76127389 MsG0280010868.01.T01:CDS 40.0%
ACCCTAAGGAATGTTCCTGT+TGG + Chr2:76126856-76126875 MsG0280010868.01.T01:CDS 45.0%
AGCAAGAAATGTGCAGTGGA+AGG + Chr2:76127328-76127347 MsG0280010868.01.T01:CDS 45.0%
ATTCCTTAGGGTTCCTCCTT+TGG - Chr2:76126848-76126867 None:intergenic 45.0%
CACCAACAGGAACATTCCTT+AGG - Chr2:76126861-76126880 None:intergenic 45.0%
CTAAGGAATGTTCCTGTTGG+TGG + Chr2:76126859-76126878 MsG0280010868.01.T01:CDS 45.0%
CTAATGAGTAGTCCTACCTG+AGG - Chr2:76125837-76125856 None:intergenic 45.0%
CTCAGGTAGGACTACTCATT+AGG + Chr2:76125835-76125854 MsG0280010868.01.T01:intron 45.0%
GCAAGAAATGTGCAGTGGAA+GGG + Chr2:76127329-76127348 MsG0280010868.01.T01:CDS 45.0%
GTGAAGCAAGAAATGTGCAG+TGG + Chr2:76127324-76127343 MsG0280010868.01.T01:CDS 45.0%
GTGCTTGGAGTGAAACTGAA+TGG - Chr2:76125749-76125768 None:intergenic 45.0%
GTGTATGGAAATGGGGACAA+TGG + Chr2:76127213-76127232 MsG0280010868.01.T01:CDS 45.0%
GTTTCACATCTCCTTGGCAA+GGG + Chr2:76127455-76127474 MsG0280010868.01.T01:three_prime_UTR 45.0%
GTTTGGATGGATCCTTCTTG+TGG + Chr2:76125807-76125826 MsG0280010868.01.T01:exon 45.0%
TTGCGATCACAATGCCTTTG+CGG + Chr2:76127602-76127621 MsG0280010868.01.T01:three_prime_UTR 45.0%
! GGACAGTTCAAAGCTTGTTC+TGG - Chr2:76126730-76126749 None:intergenic 45.0%
!! AGAAGGTATTGGACCAAAGG+AGG + Chr2:76126832-76126851 MsG0280010868.01.T01:CDS 45.0%
!! GCTTGTTCTGGTTGAGGTTT+TGG - Chr2:76126718-76126737 None:intergenic 45.0%
!! GTGTTGGTTGAGTTGCATCT+TGG - Chr2:76126751-76126770 None:intergenic 45.0%
ACCTGAGGTTGTCCACAAGA+AGG - Chr2:76125822-76125841 None:intergenic 50.0%
CTATGAAGAAGCCCTTGCCA+AGG - Chr2:76127469-76127488 None:intergenic 50.0%
GGTTTCACATCTCCTTGGCA+AGG + Chr2:76127454-76127473 MsG0280010868.01.T01:three_prime_UTR 50.0%
TCCTTCTTGTGGACAACCTC+AGG + Chr2:76125818-76125837 MsG0280010868.01.T01:CDS 50.0%
TCTTGTGGACAACCTCAGGT+AGG + Chr2:76125822-76125841 MsG0280010868.01.T01:intron 50.0%
TTTCTGCATCCACCACCAAC+AGG - Chr2:76126874-76126893 None:intergenic 50.0%
! AGGAATGTTCCTGTTGGTGG+TGG + Chr2:76126862-76126881 MsG0280010868.01.T01:CDS 50.0%
GGACCAAAGGAGGAACCCTA+AGG + Chr2:76126842-76126861 MsG0280010868.01.T01:CDS 55.0%
!! TTTTCCTCCTTTAGCGGGCC+TGG - Chr2:76127391-76127410 None:intergenic 55.0%
GTTTCCAGGCCCGCTAAAGG+AGG + Chr2:76127384-76127403 MsG0280010868.01.T01:CDS 60.0%
TGGGTTTCCAGGCCCGCTAA+AGG + Chr2:76127381-76127400 MsG0280010868.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr2 gene 76125653 76127945 76125653 ID=MsG0280010868.01;Name=MsG0280010868.01
Chr2 mRNA 76125653 76127945 76125653 ID=MsG0280010868.01.T01;Parent=MsG0280010868.01;Name=MsG0280010868.01.T01;_AED=0.19;_eAED=0.19;_QI=160|1|1|1|0|0|2|523|266
Chr2 exon 76125653 76125839 76125653 ID=MsG0280010868.01.T01:exon:11228;Parent=MsG0280010868.01.T01
Chr2 exon 76126649 76127945 76126649 ID=MsG0280010868.01.T01:exon:11229;Parent=MsG0280010868.01.T01
Chr2 five_prime_UTR 76125653 76125812 76125653 ID=MsG0280010868.01.T01:five_prime_utr;Parent=MsG0280010868.01.T01
Chr2 CDS 76125813 76125839 76125813 ID=MsG0280010868.01.T01:cds;Parent=MsG0280010868.01.T01
Chr2 CDS 76126649 76127422 76126649 ID=MsG0280010868.01.T01:cds;Parent=MsG0280010868.01.T01
Chr2 three_prime_UTR 76127423 76127945 76127423 ID=MsG0280010868.01.T01:three_prime_utr;Parent=MsG0280010868.01.T01
Gene Sequence

>MsG0280010868.01.T01

ATGGATCCTTCTTGTGGACAACCTCAGCAAATGTCGAGCCAATCATCAATGGAAAACATGTTAGGTTGCTCAAAAGATGAGCAAGAAAGAAAGCCAAAACCTCAACCAGAACAAGCTTTGAACTGTCCAAGATGCAACTCAACCAACACCAAATTCTGTTACTATAACAACTATAGTCTTACTCAGCCAAGATATTTCTGCAAATCTTGTAGAAGGTATTGGACCAAAGGAGGAACCCTAAGGAATGTTCCTGTTGGTGGTGGATGCAGAAAAAACAAAAGATCATCACCATCATCATCATCTTCAAAGAGGATTCAAGATCAAACATTCACACCAAATCTCAGCCCATTTAACAATCTCCCTCATTCATCTTATGATCATAATTCCAATGATTTTGCATTAGCATTAGCTAGGCTTCAAAAGCAATCATGTGGACAAATGGGTTATGATGATCATGATGCTTCAAATCTAGGAAATTCAGGTATGAACAATCATTCAACCATAAACCATGGATTTATGGATGCAATTAGAAGTGGATTATTTCTTGGAAATGGACTACATTATAATAATAATGTTCAGAATATGTATGGTGTGTATGGAAATGGGGACAATGGTGAAGTAAATAGTGGTAACAATGCAAATAACAATGCTTGTGGGGTTAGTGAAGAAATGATGTTTCCCTATGATCAAGAAATTAACAATGTGAAGCAAGAAATGTGCAGTGGAAGGGAACAAATTAGTGAAAGTAAAAGTTTTTGGTGGGTTTCCAGGCCCGCTAAAGGAGGAAAAAAACATGGGTGA

Protein sequence

>MsG0280010868.01.T01

MDPSCGQPQQMSSQSSMENMLGCSKDEQERKPKPQPEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSPSSSSSKRIQDQTFTPNLSPFNNLPHSSYDHNSNDFALALARLQKQSCGQMGYDDHDASNLGNSGMNNHSTINHGFMDAIRSGLFLGNGLHYNNNVQNMYGVYGNGDNGEVNSGNNANNNACGVSEEMMFPYDQEINNVKQEMCSGREQISESKSFWWVSRPAKGGKKHG*