AlfalfaGEDB | MsG0280010868.01

M. sativa cultivar ZhongmuNo.1 / MsG0280010868.01

KEGG: -
GO: GO:0003677 GO:0006355
PFAM: PF02701

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280010868.01.T01	XP_003597150.1	92.884	267	18	1	1	266	1	267	4.27E-158	451

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280010868.01.T01	Q84TE9	54.422	147	51	4	26	160	33	175	3.98E-42	147

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280010868.01.T01	G7IU51	92.884	267	18	1	1	266	1	267	2.04e-158	451

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TFs/TRs:

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Gene ID	Type	Classification
MsG0280010868.01.T01	TF	C2C2-Dof

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047814.01	MsG0280010868.01	0.825401	4.781725e-54	4.353900e-51
MsG0080048700.01	MsG0280010868.01	0.819131	1.364042e-52	1.040749e-49
MsG0080048701.01	MsG0280010868.01	0.843900	1.054276e-58	1.673811e-55
MsG0080048842.01	MsG0280010868.01	-0.817974	2.495606e-52	1.844275e-49
MsG0080048952.01	MsG0280010868.01	0.807896	4.039681e-50	2.276952e-47
MsG0080049140.01	MsG0280010868.01	0.805536	1.273348e-49	6.753457e-47
MsG0180000024.01	MsG0280010868.01	0.815815	7.618410e-52	5.307068e-49
MsG0180000076.01	MsG0280010868.01	0.837001	6.723574e-57	8.618170e-54
MsG0180000197.01	MsG0280010868.01	0.803809	2.920152e-49	1.481475e-46
MsG0180000300.01	MsG0280010868.01	0.864309	1.334468e-64	4.170689e-61

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280010868.01.T01	MTR_2g093220	92.884	267	18	1	1	266	1	267	5.17e-162	451
MsG0280010868.01.T01	MTR_4g461080	54.510	255	67	10	13	245	2	229	5.00e-65	204
MsG0280010868.01.T01	MTR_3g091820	85.294	68	10	0	29	96	32	99	4.75e-38	135
MsG0280010868.01.T01	MTR_1g077600	63.736	91	29	2	8	94	7	97	3.97e-36	130
MsG0280010868.01.T01	MTR_1g077600	63.736	91	29	2	8	94	7	97	4.40e-36	130
MsG0280010868.01.T01	MTR_8g027295	62.626	99	23	3	23	116	9	98	5.52e-35	127
MsG0280010868.01.T01	MTR_2g096740	54.464	112	42	2	8	119	31	133	1.45e-34	126
MsG0280010868.01.T01	MTR_2g096740	54.464	112	42	2	8	119	46	148	1.91e-34	126
MsG0280010868.01.T01	MTR_3g090430	76.389	72	17	0	23	94	34	105	1.32e-33	124
MsG0280010868.01.T01	MTR_4g022370	51.938	129	40	2	7	126	62	177	3.43e-33	124

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280010868.01.T01	AT5G60200	54.422	147	51	4	26	160	33	175	4.06e-43	147
MsG0280010868.01.T01	AT3G45610	48.684	152	58	4	11	145	1	149	7.43e-39	136
MsG0280010868.01.T01	AT2G28510	65.179	112	30	4	38	142	46	155	6.37e-36	130
MsG0280010868.01.T01	AT4G24060	83.333	66	11	0	29	94	42	107	7.90e-36	130
MsG0280010868.01.T01	AT3G55370	64.211	95	28	2	12	105	52	141	8.51e-35	127
MsG0280010868.01.T01	AT3G55370	64.211	95	28	2	12	105	97	186	8.84e-35	129
MsG0280010868.01.T01	AT3G55370	64.211	95	28	2	12	105	52	141	1.16e-34	128
MsG0280010868.01.T01	AT3G61850	82.812	64	11	0	33	96	55	118	8.99e-34	124
MsG0280010868.01.T01	AT3G61850	82.812	64	11	0	33	96	55	118	8.99e-34	124
MsG0280010868.01.T01	AT3G61850	82.812	64	11	0	33	96	67	130	1.02e-33	124

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Find 87 sgRNAs with CRISPR-Local

Find 143 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCAATCATGTGGACAAA+TGG	0.379363	2:+76127041	MsG0280010868.01.T01:CDS
AAATTGTGTAATTTCCGCAA+AGG	0.554252	2:-76127616	None:intergenic
AACCATAAACCATGGATTTA+TGG	0.149923	2:+76127119	MsG0280010868.01.T01:CDS
AAGCAATCATGTGGACAAAT+GGG	0.452916	2:+76127042	MsG0280010868.01.T01:CDS
AATAATGTTCAGAATATGTA+TGG	0.460682	2:+76127189	MsG0280010868.01.T01:CDS
AATCATTCAACCATAAACCA+TGG	0.606118	2:+76127111	MsG0280010868.01.T01:CDS
AATGAGGGAGATTGTTAAAT+GGG	0.423268	2:-76126966	None:intergenic
AATGCAAATAACAATGCTTG+TGG	0.543604	2:+76127255	MsG0280010868.01.T01:CDS
AATGTCGAGCCAATCATCAA+TGG	0.508256	2:+76126651	MsG0280010868.01.T01:CDS
ACCAACAGGAACATTCCTTA+GGG	0.541748	2:-76126857	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATTGTGTAATTTCCGCAA+AGG	-	Chr2:76127619-76127638	None:intergenic	30.0%
AACCATAAACCATGGATTTA+TGG	+	Chr2:76127119-76127138	MsG0280010868.01.T01:CDS	30.0%
AATCATTCAACCATAAACCA+TGG	+	Chr2:76127111-76127130	MsG0280010868.01.T01:CDS	30.0%
AATGAGGGAGATTGTTAAAT+GGG	-	Chr2:76126969-76126988	None:intergenic	30.0%
AATGCAAATAACAATGCTTG+TGG	+	Chr2:76127255-76127274	MsG0280010868.01.T01:CDS	30.0%
AGAGTGAAAAATCCAAAATG+AGG	-	Chr2:76125661-76125680	None:intergenic	30.0%
ATCCATAAATCCATGGTTTA+TGG	-	Chr2:76127124-76127143	None:intergenic	30.0%
ATGCAAATAACAATGCTTGT+GGG	+	Chr2:76127256-76127275	MsG0280010868.01.T01:CDS	30.0%
ATGGGAAAAAAGAAGAAGAA+AGG	-	Chr2:76125730-76125749	None:intergenic	30.0%
ATTTCTGCAAATCTTGTAGA+AGG	+	Chr2:76126815-76126834	MsG0280010868.01.T01:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	76125653	76127945	76125653	ID=MsG0280010868.01;Name=MsG0280010868.01
Chr2	mRNA	76125653	76127945	76125653	ID=MsG0280010868.01.T01;Parent=MsG0280010868.01;Name=MsG0280010868.01.T01;_AED=0.19;_eAED=0.19;_QI=160\|1\|1\|1\|0\|0\|2\|523\|266
Chr2	exon	76125653	76125839	76125653	ID=MsG0280010868.01.T01:exon:11228;Parent=MsG0280010868.01.T01
Chr2	exon	76126649	76127945	76126649	ID=MsG0280010868.01.T01:exon:11229;Parent=MsG0280010868.01.T01
Chr2	five_prime_UTR	76125653	76125812	76125653	ID=MsG0280010868.01.T01:five_prime_utr;Parent=MsG0280010868.01.T01
Chr2	CDS	76125813	76125839	76125813	ID=MsG0280010868.01.T01:cds;Parent=MsG0280010868.01.T01
Chr2	CDS	76126649	76127422	76126649	ID=MsG0280010868.01.T01:cds;Parent=MsG0280010868.01.T01
Chr2	three_prime_UTR	76127423	76127945	76127423	ID=MsG0280010868.01.T01:three_prime_utr;Parent=MsG0280010868.01.T01

Gene Sequence

>MsG0280010868.01.T01

ATGGATCCTTCTTGTGGACAACCTCAGCAAATGTCGAGCCAATCATCAATGGAAAACATGTTAGGTTGCTCAAAAGATGAGCAAGAAAGAAAGCCAAAACCTCAACCAGAACAAGCTTTGAACTGTCCAAGATGCAACTCAACCAACACCAAATTCTGTTACTATAACAACTATAGTCTTACTCAGCCAAGATATTTCTGCAAATCTTGTAGAAGGTATTGGACCAAAGGAGGAACCCTAAGGAATGTTCCTGTTGGTGGTGGATGCAGAAAAAACAAAAGATCATCACCATCATCATCATCTTCAAAGAGGATTCAAGATCAAACATTCACACCAAATCTCAGCCCATTTAACAATCTCCCTCATTCATCTTATGATCATAATTCCAATGATTTTGCATTAGCATTAGCTAGGCTTCAAAAGCAATCATGTGGACAAATGGGTTATGATGATCATGATGCTTCAAATCTAGGAAATTCAGGTATGAACAATCATTCAACCATAAACCATGGATTTATGGATGCAATTAGAAGTGGATTATTTCTTGGAAATGGACTACATTATAATAATAATGTTCAGAATATGTATGGTGTGTATGGAAATGGGGACAATGGTGAAGTAAATAGTGGTAACAATGCAAATAACAATGCTTGTGGGGTTAGTGAAGAAATGATGTTTCCCTATGATCAAGAAATTAACAATGTGAAGCAAGAAATGTGCAGTGGAAGGGAACAAATTAGTGAAAGTAAAAGTTTTTGGTGGGTTTCCAGGCCCGCTAAAGGAGGAAAAAAACATGGGTGA

Protein sequence

>MsG0280010868.01.T01

MDPSCGQPQQMSSQSSMENMLGCSKDEQERKPKPQPEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSPSSSSSKRIQDQTFTPNLSPFNNLPHSSYDHNSNDFALALARLQKQSCGQMGYDDHDASNLGNSGMNNHSTINHGFMDAIRSGLFLGNGLHYNNNVQNMYGVYGNGDNGEVNSGNNANNNACGVSEEMMFPYDQEINNVKQEMCSGREQISESKSFWWVSRPAKGGKKHG*