AlfalfaGEDB | MsG0380015738.01

M. sativa cultivar ZhongmuNo.1 / MsG0380015738.01

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380015738.01.T01	XP_013460981.1	49.819	277	53	5	1	191	15	291	3.51E-67	217

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380015738.01.T01	A0A072VA05	49.819	277	53	5	1	191	15	291	1.68e-67	217

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180003547.01	MsG0380015738.01	0.864129	1.518720e-64	4.716404e-61
MsG0180004714.01	MsG0380015738.01	0.800434	1.443907e-48	6.722613e-46
MsG0180006028.01	MsG0380015738.01	0.814760	1.307684e-51	8.850626e-49
MsG0280009675.01	MsG0380015738.01	0.848180	7.222966e-60	1.314374e-56
MsG0380015738.01	MsG0480020139.01	0.837810	4.173334e-57	5.483745e-54
MsG0380015738.01	MsG0480021213.01	0.836222	1.061771e-56	1.329637e-53
MsG0380015738.01	MsG0680030289.01	-0.802835	4.646974e-49	2.299567e-46
MsG0380015738.01	MsG0780037186.01	0.820437	6.863727e-53	5.430795e-50
MsG0380015738.01	MsG0780040105.01	0.816917	4.319266e-52	3.100922e-49
MsG0380015738.01	MsG0880041847.01	0.825350	4.918197e-54	4.471509e-51

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380015738.01.T01	MTR_3g075500	49.819	277	53	5	1	191	15	291	4.25e-71	217
MsG0380015738.01.T01	MTR_3g075500	45.703	256	53	5	1	170	15	270	4.72e-55	176

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 74 sgRNAs with CRISPR-Local

Find 352 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGATCATTGGCTGTTAACA+AGG	0.537173	3:-74473821	MsG0380015738.01.T01:CDS
AAGCTGGATTGAGTCTCGAT+GGG	0.545353	3:-74475122	MsG0380015738.01.T01:CDS
AAGGTGGTTTGGATTTGGAG+TGG	0.563883	3:+74475260	None:intergenic
ACAAATAAATAACAGTAAAA+TGG	0.277176	3:+74473173	None:intergenic
ACAAGGGAGAGAAGAGCGGT+TGG	0.605646	3:+74475190	None:intergenic
ACCACATAAATTCTTATGAC+AGG	0.477243	3:+74473742	None:intergenic
ACCAGCGGTTTCAGTTTCAG+CGG	0.623350	3:+74475083	None:intergenic
ACCTGTCATAAGAATTTATG+TGG	0.493099	3:-74473743	MsG0380015738.01.T01:intron
ACGAACAAGGGAGAGAAGAG+CGG	0.671530	3:+74475186	None:intergenic
ACTCAAAAGGAGCCGCGTCT+GGG	0.529406	3:+74473310	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAATTCCAAAAATACCCC+TGG	-	Chr3:74473347-74473366	MsG0380015738.01.T01:CDS	30.0%
AAAGAACTCAAGATAGGATT+AGG	+	Chr3:74471931-74471950	None:intergenic	30.0%
AAGAGTAAAGAACTCAAGAT+AGG	+	Chr3:74471937-74471956	None:intergenic	30.0%
AATGAACCATATTTATAGGG+AGG	+	Chr3:74474576-74474595	None:intergenic	30.0%
AATGTCGATATTTCAAGCTA+TGG	-	Chr3:74471638-74471657	MsG0380015738.01.T01:intron	30.0%
ACCACATAAATTCTTATGAC+AGG	+	Chr3:74472577-74472596	None:intergenic	30.0%
ACCTGTCATAAGAATTTATG+TGG	-	Chr3:74472573-74472592	MsG0380015738.01.T01:intron	30.0%
ACTATATAGTATGCGTTCTA+AGG	+	Chr3:74472088-74472107	None:intergenic	30.0%
ACTGGTATAGCTTATGTAAT+AGG	-	Chr3:74474907-74474926	MsG0380015738.01.T01:intron	30.0%
ATGAACCATATTTATAGGGA+GGG	+	Chr3:74474575-74474594	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	74471025	74475313	74471025	ID=MsG0380015738.01;Name=MsG0380015738.01
Chr3	mRNA	74471025	74475313	74471025	ID=MsG0380015738.01.T01;Parent=MsG0380015738.01;Name=MsG0380015738.01.T01;_AED=0.46;_eAED=0.46;_QI=0\|0.5\|0.4\|1\|0\|0\|5\|336\|191
Chr3	exon	74471025	74471082	74471025	ID=MsG0380015738.01.T01:exon:14349;Parent=MsG0380015738.01.T01
Chr3	exon	74473034	74473377	74473034	ID=MsG0380015738.01.T01:exon:14348;Parent=MsG0380015738.01.T01
Chr3	exon	74473566	74473652	74473566	ID=MsG0380015738.01.T01:exon:14347;Parent=MsG0380015738.01.T01
Chr3	exon	74473744	74473854	74473744	ID=MsG0380015738.01.T01:exon:14346;Parent=MsG0380015738.01.T01
Chr3	exon	74475002	74475313	74475002	ID=MsG0380015738.01.T01:exon:14345;Parent=MsG0380015738.01.T01
Chr3	CDS	74475002	74475313	74475002	ID=MsG0380015738.01.T01:cds;Parent=MsG0380015738.01.T01
Chr3	CDS	74473744	74473854	74473744	ID=MsG0380015738.01.T01:cds;Parent=MsG0380015738.01.T01
Chr3	CDS	74473566	74473652	74473566	ID=MsG0380015738.01.T01:cds;Parent=MsG0380015738.01.T01
Chr3	CDS	74473312	74473377	74473312	ID=MsG0380015738.01.T01:cds;Parent=MsG0380015738.01.T01
Chr3	three_prime_UTR	74473034	74473311	74473034	ID=MsG0380015738.01.T01:three_prime_utr;Parent=MsG0380015738.01.T01
Chr3	three_prime_UTR	74471025	74471082	74471025	ID=MsG0380015738.01.T01:three_prime_utr;Parent=MsG0380015738.01.T01

Gene Sequence

>MsG0380015738.01.T01

ATGGCCGATTCCTGCTCCTCTCATCCCTCTTCCACTCCAAATCCAAACCACCTTCTTCTCCCTTCCCTCCAAACCCCTCAATCTCCATCTCTCCATCAAAACCAACCGCTCTTCTCTCCCTTGTTCGTTGCTCAAGAAGGCGACACGCTCACCACTTCTCTAGACGAAGAAGCTGGATTGAGTCTCGATGGGGAGCCCACTACCGACGCCGCTGAAACTGAAACCGCTGGTGATGATTCTGCTGAAGCTGATTTTGTTGAACCACCTGAGGAAGCAAAATTATTTGTTGGTAATTGCCTTTTGATGTTGATAGACTACGATGGAAGATCATTGGCTGTTAACAAGGCTTCTCCTAAAGGATCTCGACCCGAGCGTACTGAGCGTGCACCTCGCAGTTTTGAACCTGTCATAAGAATTTATGTGAGAGACTGGTCGATCACGTGGATTTGGCTTTGTCACAATGTCGATGAAACTGAAATGAATGATGCCATTGCCGCTCTTGATGGTCAGAGTTTGGAGGGTAGGACAATAAGAGTGAGCGTTGCCGAAGACAGGCCCAGACGCGGCTCCTTTTGA

Protein sequence

>MsG0380015738.01.T01

MADSCSSHPSSTPNPNHLLLPSLQTPQSPSLHQNQPLFSPLFVAQEGDTLTTSLDEEAGLSLDGEPTTDAAETETAGDDSAEADFVEPPEEAKLFVGNCLLMLIDYDGRSLAVNKASPKGSRPERTERAPRSFEPVIRIYVRDWSITWIWLCHNVDETEMNDAIAALDGQSLEGRTIRVSVAEDRPRRGSF*