AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880041847.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880041847.01.T01 MTR_8g006755 96.186 236 9 0 49 284 235 470 4.96e-171 481
MsG0880041847.01.T01 MTR_4g068190 40.449 89 53 0 159 247 108 196 1.35e-13 68.9
MsG0880041847.01.T01 MTR_7g006570 30.201 149 71 5 151 267 90 237 4.40e-12 65.1
MsG0880041847.01.T01 MTR_4g094785 33.600 125 71 2 154 266 114 238 5.02e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880041847.01.T01 AT3G60370 66.390 241 64 4 50 284 13 242 2.94e-107 311
MsG0880041847.01.T01 AT3G60370 66.390 241 64 4 50 284 42 271 8.35e-107 311
MsG0880041847.01.T01 AT2G43560 39.640 111 66 1 137 247 81 190 1.30e-15 74.7
MsG0880041847.01.T01 AT2G43560 43.820 89 50 0 159 247 46 134 1.63e-15 73.2
MsG0880041847.01.T01 AT4G19830 29.932 147 70 4 159 272 83 229 5.47e-13 67.4
MsG0880041847.01.T01 AT5G13410 31.788 151 70 5 149 267 104 253 7.44e-12 64.7

Find 60 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTACCTTCTCTAATAAAATT+TGG 0.135782 8:+175656 None:intergenic
TGGTTCTTCTTTCACAGTTT+TGG 0.207260 8:+174101 None:intergenic
AACTATATAACGCGTGATTC+GGG 0.213117 8:-175456 MsG0880041847.01.T01:CDS
GAAACTTGCGCTTTCTGTTT+TGG 0.240114 8:-175807 MsG0880041847.01.T01:CDS
GTTCCATTGCACTATAGTTT+AGG 0.242569 8:-176579 MsG0880041847.01.T01:CDS
TATTGACAGCACTTATTTAC+AGG 0.273970 8:-174905 MsG0880041847.01.T01:CDS
TACTTTCTCAGGATGTAATA+TGG 0.285948 8:+175838 None:intergenic
CTTGTTACCCATGCGAATTT+TGG 0.288794 8:+174873 None:intergenic
TTCCATTGCACTATAGTTTA+GGG 0.302357 8:-176578 MsG0880041847.01.T01:CDS
TACCTTCTCTAATAAAATTT+GGG 0.314007 8:+175657 None:intergenic
ATAATTATTCCTCCTGATCT+TGG 0.323150 8:-174685 MsG0880041847.01.T01:CDS
TAACTATATAACGCGTGATT+CGG 0.332001 8:-175457 MsG0880041847.01.T01:CDS
AACTACTTTAGAACCTGATT+TGG 0.344434 8:-176068 MsG0880041847.01.T01:intron
AAATGATGATGATATTATAA+TGG 0.350199 8:+177414 None:intergenic
TTCCTCCTTAATACTTTCTC+AGG 0.354488 8:+175827 None:intergenic
CTTCAGCACAAATATTAGTT+AGG 0.355241 8:-174030 MsG0880041847.01.T01:three_prime_UTR
TACATCCTGAGAAAGTATTA+AGG 0.373534 8:-175832 MsG0880041847.01.T01:CDS
CACTCTTACATGGAATCCTT+TGG 0.373861 8:+175952 None:intergenic
CTTTATCAGAATACCAAATC+AGG 0.374037 8:+176055 None:intergenic
ATAAAATTTGGGAAGTCATC+TGG 0.374287 8:+175668 None:intergenic
GGTAACAAGGCATTGGTTCC+AGG 0.384493 8:-174859 MsG0880041847.01.T01:intron
TCACGCGTTATATAGTTATC+TGG 0.398419 8:+175462 None:intergenic
AATGATGATGATATTATAAT+GGG 0.402759 8:+177415 None:intergenic
CACTTATTTACAGGGTTCTC+CGG 0.422942 8:-174896 MsG0880041847.01.T01:CDS
TCCAATGGAATGAAAATAAG+AGG 0.433703 8:+173909 None:intergenic
AAAACCTGCTGACCATCCTT+TGG 0.437003 8:+175393 None:intergenic
CAGGTCACATTTCACTATGT+TGG 0.449348 8:-174949 MsG0880041847.01.T01:CDS
TTTGCATGAGAAGATAAAGT+TGG 0.475317 8:+175767 None:intergenic
TGTATTTATGGATAGAGTGC+AGG 0.475495 8:-175867 MsG0880041847.01.T01:intron
TAAATTATGATCTTGCTTCG+AGG 0.476673 8:-174004 MsG0880041847.01.T01:three_prime_UTR
TATGTTGGCTATAATGAATC+CGG 0.489665 8:-174934 MsG0880041847.01.T01:CDS
TCCTCCTGATCTTGGACCCC+CGG 0.496637 8:-174677 MsG0880041847.01.T01:intron
CAAAATTCGCATGGGTAACA+AGG 0.517528 8:-174872 MsG0880041847.01.T01:CDS
AGTGCTGTCAATACGCCGGC+CGG 0.518095 8:+174915 None:intergenic
AACATCAGAGTAAAATCCTA+TGG 0.519964 8:+174081 None:intergenic
TTGTCCAAAGGATGGTCAGC+AGG 0.523009 8:-175397 MsG0880041847.01.T01:intron
TCGCATGGGTAACAAGGCAT+TGG 0.532556 8:-174866 MsG0880041847.01.T01:CDS
AAATTCCTTTGTACAGTACA+AGG 0.543326 8:-176012 MsG0880041847.01.T01:CDS
CTGTACCAACTTCAAAATCT+CGG 0.552576 8:+175424 None:intergenic
TTCTCCGGCCAAAATTCGCA+TGG 0.552997 8:-174881 MsG0880041847.01.T01:CDS
GGAATTAGAGACATGAGAGC+AGG 0.554241 8:-174721 MsG0880041847.01.T01:CDS
TCTGATGTAGGATTTGAGGA+AGG 0.571358 8:-174742 MsG0880041847.01.T01:intron
ATTAGAGACATGAGAGCAGG+TGG 0.575545 8:-174718 MsG0880041847.01.T01:CDS
ACCCCTAAACTATAGTGCAA+TGG 0.592958 8:+176576 None:intergenic
ATTGACAGCACTTATTTACA+GGG 0.593497 8:-174904 MsG0880041847.01.T01:CDS
AACTGTGAAAGAAGAACCAT+AGG 0.596337 8:-174097 MsG0880041847.01.T01:CDS
CTGTTGTCAATAATCGAGAA+AGG 0.598520 8:-173981 MsG0880041847.01.T01:three_prime_UTR
GGACAAGGACAATCAACTCA+TGG 0.598798 8:-175991 MsG0880041847.01.T01:CDS
ACTATATAACGCGTGATTCG+GGG 0.601130 8:-175455 MsG0880041847.01.T01:CDS
CTTGTCCTTGTACTGTACAA+AGG 0.610580 8:+176007 None:intergenic
CTTTGTACAGTACAAGGACA+AGG 0.612700 8:-176006 MsG0880041847.01.T01:CDS
ACAGGTGATTGTCCAAAGGA+TGG 0.620639 8:-175405 MsG0880041847.01.T01:CDS
TCCATTGCACTATAGTTTAG+GGG 0.622868 8:-176577 MsG0880041847.01.T01:intron
GAAGATGGTGAAGATAAGAG+CGG 0.626564 8:+177365 None:intergenic
TCTCCGGCCAAAATTCGCAT+GGG 0.643150 8:-174880 MsG0880041847.01.T01:CDS
ATCCTGAGAAAGTATTAAGG+AGG 0.647507 8:-175829 MsG0880041847.01.T01:CDS
TGGTACAGGTGATTGTCCAA+AGG 0.660317 8:-175409 MsG0880041847.01.T01:CDS
AATAAGTGCTGTCAATACGC+CGG 0.677404 8:+174911 None:intergenic
TTGGCTATAATGAATCCGGC+CGG 0.687904 8:-174930 MsG0880041847.01.T01:CDS
CAAGGACAATCAACTCATGG+AGG 0.721666 8:-175988 MsG0880041847.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAGTTAATATTTTAGTTGA+TGG - Chr8:174158-174177 MsG0880041847.01.T01:CDS 15.0%
!!! AAGTTAATATTTTAGTTGAT+GGG - Chr8:174159-174178 MsG0880041847.01.T01:CDS 15.0%
!!! AATTTTCATCTTAATTGTTT+GGG - Chr8:175998-176017 MsG0880041847.01.T01:CDS 15.0%
!!! TAATTTTCATCTTAATTGTT+TGG - Chr8:175997-176016 MsG0880041847.01.T01:CDS 15.0%
!!! TCACATAATTTTTTACATTA+CGG - Chr8:177067-177086 MsG0880041847.01.T01:intron 15.0%
!!! TCATTTTCTCAAATTATTAT+CGG + Chr8:176795-176814 None:intergenic 15.0%
!! AAGAAGTTAACACAAATATT+AGG - Chr8:176023-176042 MsG0880041847.01.T01:CDS 20.0%
!! AATCATGTATGAAAAAACAA+TGG + Chr8:175702-175721 None:intergenic 20.0%
!! AATTGAAACACATATATGTA+TGG + Chr8:174078-174097 None:intergenic 20.0%
!! AATTTATTGAAGAGATTAGA+AGG + Chr8:175053-175072 None:intergenic 20.0%
!! ATTTATTGAAGAGATTAGAA+GGG + Chr8:175052-175071 None:intergenic 20.0%
!! GTAATAAATACTTTCAACAT+TGG + Chr8:174993-175012 None:intergenic 20.0%
!! TAAAGAAAGAAATAGTTGAT+TGG + Chr8:175977-175996 None:intergenic 20.0%
!! TAACTATCATACAATGAATT+AGG + Chr8:175159-175178 None:intergenic 20.0%
!! TACCTTCTCTAATAAAATTT+GGG + Chr8:175675-175694 None:intergenic 20.0%
!! TATAAGCAATTCTTAAGTTT+AGG - Chr8:174646-174665 MsG0880041847.01.T01:intron 20.0%
!! TGAAAAGTTACAACAAATTA+GGG - Chr8:174348-174367 MsG0880041847.01.T01:intron 20.0%
!! TTACCTTCTCTAATAAAATT+TGG + Chr8:175676-175695 None:intergenic 20.0%
!! TTAGCAATAATTATCAAACA+TGG + Chr8:176730-176749 None:intergenic 20.0%
!! TTCATTTAATATCCTTCTAA+GGG - Chr8:175427-175446 MsG0880041847.01.T01:CDS 20.0%
!! TTGAAAAGTTACAACAAATT+AGG - Chr8:174347-174366 MsG0880041847.01.T01:intron 20.0%
!! TTTCATTTAATATCCTTCTA+AGG - Chr8:175426-175445 MsG0880041847.01.T01:CDS 20.0%
!!! ATTATACGGATTCATATTTT+TGG + Chr8:175590-175609 None:intergenic 20.0%
!!! GATATTTTTTTTTCTTTCTG+AGG - Chr8:174117-174136 MsG0880041847.01.T01:CDS 20.0%
!!! GCATTTTTTGTTTGTATTTA+TGG - Chr8:175450-175469 MsG0880041847.01.T01:CDS 20.0%
! AAAACATTGCCTATACATAA+GGG + Chr8:176965-176984 None:intergenic 25.0%
! AAAATAATGTCACTCTTACA+TGG + Chr8:175390-175409 None:intergenic 25.0%
! AAACAAGTCTATTTGTTTGT+TGG - Chr8:174690-174709 MsG0880041847.01.T01:CDS 25.0%
! AACAAGTCTATTTGTTTGTT+GGG - Chr8:174691-174710 MsG0880041847.01.T01:CDS 25.0%
! AATAAACTATCTATCCAAAC+AGG + Chr8:174816-174835 None:intergenic 25.0%
! AATACTACTACTTGTATGTT+TGG + Chr8:176215-176234 None:intergenic 25.0%
! ATAAACTATCTATCCAAACA+GGG + Chr8:174815-174834 None:intergenic 25.0%
! CTAAAGTAGTTAGATAAACA+TGG + Chr8:175252-175271 None:intergenic 25.0%
! TAAAACATTGCCTATACATA+AGG + Chr8:176966-176985 None:intergenic 25.0%
! TAAATACTTTCAACATTGGT+TGG + Chr8:174989-175008 None:intergenic 25.0%
! TATCATACAATGAATTAGGT+AGG + Chr8:175155-175174 None:intergenic 25.0%
! TCATTTAATATCCTTCTAAG+GGG - Chr8:175428-175447 MsG0880041847.01.T01:CDS 25.0%
! TTTATTGAAGAGATTAGAAG+GGG + Chr8:175051-175070 None:intergenic 25.0%
!! AAATACTTTCAACATTGGTT+GGG + Chr8:174988-175007 None:intergenic 25.0%
!! AAGACACGTTTTTCATTATA+CGG + Chr8:175604-175623 None:intergenic 25.0%
!! AATTTTAAACTATGCATGTG+TGG - Chr8:177113-177132 MsG0880041847.01.T01:intron 25.0%
!! AATTTTCAGTTAAGATTGCA+GGG + Chr8:174574-174593 None:intergenic 25.0%
!! ACATGCATAGTTTAAAATTG+TGG + Chr8:177112-177131 None:intergenic 25.0%
!! AGTGACATTATTTTCTTGAA+TGG - Chr8:175396-175415 MsG0880041847.01.T01:intron 25.0%
!! ATTACAGAGCACAAAATTTT+GGG + Chr8:175132-175151 None:intergenic 25.0%
!! ATTCTGATAGTTGATATGTA+AGG - Chr8:174250-174269 MsG0880041847.01.T01:intron 25.0%
!! ATTTTAAACTATGCATGTGT+GGG - Chr8:177114-177133 MsG0880041847.01.T01:intron 25.0%
!! TAATTTTCAGTTAAGATTGC+AGG + Chr8:174575-174594 None:intergenic 25.0%
!! TAGTTGATATGTAAGGTTAA+TGG - Chr8:174257-174276 MsG0880041847.01.T01:intron 25.0%
!! TTCCCAAATTTTATTAGAGA+AGG - Chr8:175670-175689 MsG0880041847.01.T01:CDS 25.0%
!!! AATCTTGTTTTGTATTTTGC+AGG - Chr8:177141-177160 MsG0880041847.01.T01:intron 25.0%
!!! TAAATCTATCCTTTTTTACC+TGG + Chr8:176491-176510 None:intergenic 25.0%
!!! TGATAAAGCATTTCCTTTTT+TGG - Chr8:175289-175308 MsG0880041847.01.T01:intron 25.0%
AAAACAACTGTAACACTTAC+AGG + Chr8:175775-175794 None:intergenic 30.0%
AAAGAGAATAAGAGATGTAC+CGG + Chr8:176674-176693 None:intergenic 30.0%
AAATAATCAATAAGCTCGTG+AGG + Chr8:174462-174481 None:intergenic 30.0%
AAATCCTACATCAGAAAATG+TGG + Chr8:176582-176601 None:intergenic 30.0%
AAATTCCTTTGTACAGTACA+AGG - Chr8:175317-175336 MsG0880041847.01.T01:intron 30.0%
AACATCAGAGTAAAATCCTA+TGG + Chr8:177251-177270 None:intergenic 30.0%
AACTTATTCCGAACATATGT+CGG - Chr8:176824-176843 MsG0880041847.01.T01:intron 30.0%
ACAACAAATTAGGGTATGTT+TGG - Chr8:174357-174376 MsG0880041847.01.T01:intron 30.0%
AGGCACTAATAAAAAACCAA+AGG - Chr8:175361-175380 MsG0880041847.01.T01:intron 30.0%
ATAAAATTTGGGAAGTCATC+TGG + Chr8:175664-175683 None:intergenic 30.0%
ATAATTATTCCTCCTGATCT+TGG - Chr8:176644-176663 MsG0880041847.01.T01:intron 30.0%
ATAGGACTAAGATAGTTTAG+AGG - Chr8:174714-174733 MsG0880041847.01.T01:CDS 30.0%
ATTGACAGCACTTATTTACA+GGG - Chr8:176425-176444 MsG0880041847.01.T01:intron 30.0%
ATTGGAAATTGATGTTTGAG+TGG - Chr8:176284-176303 MsG0880041847.01.T01:intron 30.0%
CTTCAGCACAAATATTAGTT+AGG - Chr8:177299-177318 MsG0880041847.01.T01:intron 30.0%
CTTTATCAGAATACCAAATC+AGG + Chr8:175277-175296 None:intergenic 30.0%
GAGCTATAGTGTTTAAACAA+CGG - Chr8:174789-174808 MsG0880041847.01.T01:intron 30.0%
GTTGCTAAAAACTTATGCTA+AGG - Chr8:176911-176930 MsG0880041847.01.T01:intron 30.0%
GTTTATCTTCCCTTATGTAT+AGG - Chr8:176953-176972 MsG0880041847.01.T01:intron 30.0%
TAAATTATGATCTTGCTTCG+AGG - Chr8:177325-177344 MsG0880041847.01.T01:CDS 30.0%
TAACTATATAACGCGTGATT+CGG - Chr8:175872-175891 MsG0880041847.01.T01:intron 30.0%
TACTTTCTCAGGATGTAATA+TGG + Chr8:175494-175513 None:intergenic 30.0%
TATTGACAGCACTTATTTAC+AGG - Chr8:176424-176443 MsG0880041847.01.T01:intron 30.0%
TTCCATTGCACTATAGTTTA+GGG - Chr8:174751-174770 MsG0880041847.01.T01:intron 30.0%
TTGACTAAAAAAGACCTGTT+CGG - Chr8:174422-174441 MsG0880041847.01.T01:intron 30.0%
TTGTGGAAATAAGCTGAAAA+TGG - Chr8:174926-174945 MsG0880041847.01.T01:CDS 30.0%
TTTGAGCTGAAAAATGTTGA+AGG + Chr8:177172-177191 None:intergenic 30.0%
TTTGCATGAGAAGATAAAGT+TGG + Chr8:175565-175584 None:intergenic 30.0%
TTTGTTGAAATGGGGAAAAT+TGG - Chr8:176266-176285 MsG0880041847.01.T01:intron 30.0%
! AACTTTTGGATATGATGTTC+TGG - Chr8:175801-175820 MsG0880041847.01.T01:CDS 30.0%
! AGGAATTTTACTGCCAAAAA+AGG + Chr8:175305-175324 None:intergenic 30.0%
! ATGTCTTTGATTAGAAGTGT+CGG - Chr8:176879-176898 MsG0880041847.01.T01:intron 30.0%
! ATTGTTGCTGTTAAGGTTAA+TGG - Chr8:174323-174342 MsG0880041847.01.T01:intron 30.0%
! ATTTTCAGTTAAGATTGCAG+GGG + Chr8:174573-174592 None:intergenic 30.0%
! ATTTTCTGATGTAGGATTTG+AGG - Chr8:176583-176602 MsG0880041847.01.T01:CDS 30.0%
! ATTTTGCAGTGAAAACAAAC+AGG + Chr8:176092-176111 None:intergenic 30.0%
! GATTACAGAGCACAAAATTT+TGG + Chr8:175133-175152 None:intergenic 30.0%
! TATGTTGGCTATAATGAATC+CGG - Chr8:176395-176414 MsG0880041847.01.T01:intron 30.0%
!! AACTACTTTAGAACCTGATT+TGG - Chr8:175261-175280 MsG0880041847.01.T01:intron 30.0%
!! CTTGATGAGTTTGTTGAAAT+GGG - Chr8:176257-176276 MsG0880041847.01.T01:intron 30.0%
!! GTTGTTTTGTGTCAAACTTT+TGG - Chr8:175787-175806 MsG0880041847.01.T01:CDS 30.0%
!! TACATCCTGAGAAAGTATTA+AGG - Chr8:175497-175516 MsG0880041847.01.T01:intron 30.0%
!! TTGATGAGTTTGTTGAAATG+GGG - Chr8:176258-176277 MsG0880041847.01.T01:intron 30.0%
!! TTGTTTTGTATTTTGCAGGT+AGG - Chr8:177145-177164 MsG0880041847.01.T01:intron 30.0%
!!! ATTTACCGAGATTTTGAAGT+TGG - Chr8:175900-175919 MsG0880041847.01.T01:intron 30.0%
!!! CACAAAATTTTGGGTTTGTT+TGG + Chr8:175123-175142 None:intergenic 30.0%
!!! GGTTTGTTAATATGCTTTTC+AGG - Chr8:175822-175841 MsG0880041847.01.T01:CDS 30.0%
AACAAAAAATGCCCCTTAGA+AGG + Chr8:175442-175461 None:intergenic 35.0%
AACTATATAACGCGTGATTC+GGG - Chr8:175873-175892 MsG0880041847.01.T01:intron 35.0%
AACTGTGAAAGAAGAACCAT+AGG - Chr8:177232-177251 MsG0880041847.01.T01:intron 35.0%
AAGAGAATAAGAGATGTACC+GGG + Chr8:176673-176692 None:intergenic 35.0%
AATTCTTCTAGACGTACGTT+TGG - Chr8:176109-176128 MsG0880041847.01.T01:intron 35.0%
AGATTAGAAGGGGTTATGTT+TGG + Chr8:175041-175060 None:intergenic 35.0%
CCATTTCAACAAACTCATCA+AGG + Chr8:176259-176278 None:intergenic 35.0%
CGAAGTTGAATTTATGTTGC+TGG - Chr8:174211-174230 MsG0880041847.01.T01:intron 35.0%
CTGTACCAACTTCAAAATCT+CGG + Chr8:175908-175927 None:intergenic 35.0%
CTGTTGTCAATAATCGAGAA+AGG - Chr8:177348-177367 MsG0880041847.01.T01:CDS 35.0%
CTTCTAATCAAAGACATGCT+TGG + Chr8:176876-176895 None:intergenic 35.0%
GAAATAAGGAAGCTACCAAT+TGG + Chr8:176144-176163 None:intergenic 35.0%
GAAGAAGAAGAAGAAGAAGA+TGG + Chr8:173982-174001 None:intergenic 35.0%
GTTCCATTGCACTATAGTTT+AGG - Chr8:174750-174769 MsG0880041847.01.T01:intron 35.0%
TCACGCGTTATATAGTTATC+TGG + Chr8:175870-175889 None:intergenic 35.0%
TCCATTGCACTATAGTTTAG+GGG - Chr8:174752-174771 MsG0880041847.01.T01:intron 35.0%
TGACAAAAAGCTTTCGTCAT+TGG - Chr8:176539-176558 MsG0880041847.01.T01:intron 35.0%
TGTATTTATGGATAGAGTGC+AGG - Chr8:175462-175481 MsG0880041847.01.T01:CDS 35.0%
TTACATTACGGCCACAATTA+TGG - Chr8:177079-177098 MsG0880041847.01.T01:intron 35.0%
TTCCTCCTTAATACTTTCTC+AGG + Chr8:175505-175524 None:intergenic 35.0%
! AACTCTCATTGTTGCTGTTA+AGG - Chr8:174316-174335 MsG0880041847.01.T01:intron 35.0%
! CAAGTAGTAGTATTTTGCAG+TGG - Chr8:176221-176240 MsG0880041847.01.T01:intron 35.0%
! GTCTATTTGTTTGTTGGGAT+AGG - Chr8:174696-174715 MsG0880041847.01.T01:CDS 35.0%
! TAAGATAGTTTAGAGGTGCA+GGG - Chr8:174721-174740 MsG0880041847.01.T01:CDS 35.0%
! TGGTTCTTCTTTCACAGTTT+TGG + Chr8:177231-177250 None:intergenic 35.0%
! TTCTCCACATTTTCTGATGT+AGG - Chr8:176575-176594 MsG0880041847.01.T01:intron 35.0%
!! ATCCTGAGAAAGTATTAAGG+AGG - Chr8:175500-175519 MsG0880041847.01.T01:intron 35.0%
!! CCTTGATGAGTTTGTTGAAA+TGG - Chr8:176256-176275 MsG0880041847.01.T01:intron 35.0%
!! GTTGTTTTCAGAAGCTATCA+TGG - Chr8:174898-174917 MsG0880041847.01.T01:CDS 35.0%
AAGCTATCATGGAAAGCTTG+TGG - Chr8:174909-174928 MsG0880041847.01.T01:CDS 40.0%
ACCCCTAAACTATAGTGCAA+TGG + Chr8:174756-174775 None:intergenic 40.0%
ACTATATAACGCGTGATTCG+GGG - Chr8:175874-175893 MsG0880041847.01.T01:intron 40.0%
AGAGAATAAGAGATGTACCG+GGG + Chr8:176672-176691 None:intergenic 40.0%
ATAGTGAAATGTGACCTGCA+AGG + Chr8:176378-176397 None:intergenic 40.0%
CAAAATTCGCATGGGTAACA+AGG - Chr8:176457-176476 MsG0880041847.01.T01:intron 40.0%
CACTCTTACATGGAATCCTT+TGG + Chr8:175380-175399 None:intergenic 40.0%
CACTTATTTACAGGGTTCTC+CGG - Chr8:176433-176452 MsG0880041847.01.T01:intron 40.0%
CAGGTCACATTTCACTATGT+TGG - Chr8:176380-176399 MsG0880041847.01.T01:intron 40.0%
CTTGTCCTTGTACTGTACAA+AGG + Chr8:175325-175344 None:intergenic 40.0%
CTTTGTACAGTACAAGGACA+AGG - Chr8:175323-175342 MsG0880041847.01.T01:intron 40.0%
GAAGATGGTGAAGATAAGAG+CGG + Chr8:173967-173986 None:intergenic 40.0%
GACAATTTCAGTTCTCAGTC+TGG + Chr8:176058-176077 None:intergenic 40.0%
GCAATCTCGACGTTGAAATA+AGG + Chr8:176158-176177 None:intergenic 40.0%
GGTGTCAACATGTACATGTT+CGG + Chr8:176774-176793 None:intergenic 40.0%
GTTTGGTTAGAAGCTCCAAT+TGG - Chr8:176126-176145 MsG0880041847.01.T01:intron 40.0%
TCTGATGTAGGATTTGAGGA+AGG - Chr8:176587-176606 MsG0880041847.01.T01:CDS 40.0%
TTCAACGTCGAGATTGCATT+GGG - Chr8:176161-176180 MsG0880041847.01.T01:intron 40.0%
TTTCAACGTCGAGATTGCAT+TGG - Chr8:176160-176179 MsG0880041847.01.T01:intron 40.0%
! AAGATAGTTTAGAGGTGCAG+GGG - Chr8:174722-174741 MsG0880041847.01.T01:CDS 40.0%
! AATAAGTGCTGTCAATACGC+CGG + Chr8:176421-176440 None:intergenic 40.0%
! CTAAGATAGTTTAGAGGTGC+AGG - Chr8:174720-174739 MsG0880041847.01.T01:CDS 40.0%
! CTTGTTACCCATGCGAATTT+TGG + Chr8:176459-176478 None:intergenic 40.0%
! GAAACTTGCGCTTTCTGTTT+TGG - Chr8:175522-175541 MsG0880041847.01.T01:intron 40.0%
!! GCATTGGTTCCAGGTAAAAA+AGG - Chr8:176479-176498 MsG0880041847.01.T01:intron 40.0%
!!! CGAGATTTTGAAGTTGGTAC+AGG - Chr8:175906-175925 MsG0880041847.01.T01:intron 40.0%
AAAACCTGCTGACCATCCTT+TGG + Chr8:175939-175958 None:intergenic 45.0%
AAGTAAGTGATGGTCCGAAC+AGG + Chr8:174439-174458 None:intergenic 45.0%
ACAGGTGATTGTCCAAAGGA+TGG - Chr8:175924-175943 MsG0880041847.01.T01:intron 45.0%
ACTTACAGGAGAGACATCAC+AGG + Chr8:175761-175780 None:intergenic 45.0%
ATTAGAGACATGAGAGCAGG+TGG - Chr8:176611-176630 MsG0880041847.01.T01:intron 45.0%
CAAGGACAATCAACTCATGG+AGG - Chr8:175341-175360 MsG0880041847.01.T01:intron 45.0%
CTTACAGGAGAGACATCACA+GGG + Chr8:175760-175779 None:intergenic 45.0%
GAGAATAAGAGATGTACCGG+GGG + Chr8:176671-176690 None:intergenic 45.0%
GAGAGAGAGAGAGAGTTACA+TGG + Chr8:174030-174049 None:intergenic 45.0%
GGAATTAGAGACATGAGAGC+AGG - Chr8:176608-176627 MsG0880041847.01.T01:intron 45.0%
GGACAAGGACAATCAACTCA+TGG - Chr8:175338-175357 MsG0880041847.01.T01:intron 45.0%
GTCTGACACCGACATATGTT+CGG + Chr8:176835-176854 None:intergenic 45.0%
GTGGCTCACAACCATAATTG+TGG + Chr8:177093-177112 None:intergenic 45.0%
GTTTAAACAACGGCCCTGTT+TGG - Chr8:174799-174818 MsG0880041847.01.T01:intron 45.0%
TACAGTATACCATGCCTTGC+AGG - Chr8:176361-176380 MsG0880041847.01.T01:intron 45.0%
TCAAACATGGAAAGACTCGC+AGG + Chr8:176717-176736 None:intergenic 45.0%
TGGTACAGGTGATTGTCCAA+AGG - Chr8:175920-175939 MsG0880041847.01.T01:intron 45.0%
TTGCTTTCGCGATGTAGTTG+TGG - Chr8:177041-177060 MsG0880041847.01.T01:intron 45.0%
TTGGCTATAATGAATCCGGC+CGG - Chr8:176399-176418 MsG0880041847.01.T01:intron 45.0%
! AGATAGTTTAGAGGTGCAGG+GGG - Chr8:174723-174742 MsG0880041847.01.T01:CDS 45.0%
!! TTACCCATGCGAATTTTGGC+CGG + Chr8:176455-176474 None:intergenic 45.0%
CTCGCAGGTACAGTAGTGAA+TGG + Chr8:176702-176721 None:intergenic 50.0%
GAAATGTGACCTGCAAGGCA+TGG + Chr8:176373-176392 None:intergenic 50.0%
GCTCGTGAGGAAGTAAGTGA+TGG + Chr8:174449-174468 None:intergenic 50.0%
TCGCATGGGTAACAAGGCAT+TGG - Chr8:176463-176482 MsG0880041847.01.T01:intron 50.0%
TCTCCGGCCAAAATTCGCAT+GGG - Chr8:176449-176468 MsG0880041847.01.T01:intron 50.0%
TTCTCCGGCCAAAATTCGCA+TGG - Chr8:176448-176467 MsG0880041847.01.T01:intron 50.0%
TTGTCCAAAGGATGGTCAGC+AGG - Chr8:175932-175951 MsG0880041847.01.T01:intron 50.0%
!! GGTAACAAGGCATTGGTTCC+AGG - Chr8:176470-176489 MsG0880041847.01.T01:intron 50.0%
AGTGCTGTCAATACGCCGGC+CGG + Chr8:176417-176436 None:intergenic 60.0%
TCCTCCTGATCTTGGACCCC+CGG - Chr8:176652-176671 MsG0880041847.01.T01:intron 60.0%
TGTACCGGGGGTCCAAGATC+AGG + Chr8:176659-176678 None:intergenic 60.0%
ACCGGGGGTCCAAGATCAGG+AGG + Chr8:176656-176675 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr8 gene 173917 177434 173917 ID=MsG0880041847.01;Name=MsG0880041847.01
Chr8 mRNA 173917 177434 173917 ID=MsG0880041847.01.T01;Parent=MsG0880041847.01;Name=MsG0880041847.01.T01;_AED=0.45;_eAED=0.48;_QI=41|0.71|0.75|1|0.71|0.62|8|152|284
Chr8 exon 177321 177434 177321 ID=MsG0880041847.01.T01:exon:293;Parent=MsG0880041847.01.T01
Chr8 exon 176578 176609 176578 ID=MsG0880041847.01.T01:exon:294;Parent=MsG0880041847.01.T01
Chr8 exon 175961 176079 175961 ID=MsG0880041847.01.T01:exon:295;Parent=MsG0880041847.01.T01
Chr8 exon 175660 175874 175660 ID=MsG0880041847.01.T01:exon:296;Parent=MsG0880041847.01.T01
Chr8 exon 175398 175507 175398 ID=MsG0880041847.01.T01:exon:297;Parent=MsG0880041847.01.T01
Chr8 exon 174860 174968 174860 ID=MsG0880041847.01.T01:exon:298;Parent=MsG0880041847.01.T01
Chr8 exon 174678 174754 174678 ID=MsG0880041847.01.T01:exon:299;Parent=MsG0880041847.01.T01
Chr8 exon 173917 174188 173917 ID=MsG0880041847.01.T01:exon:300;Parent=MsG0880041847.01.T01
Chr8 five_prime_UTR 177394 177434 177394 ID=MsG0880041847.01.T01:five_prime_utr;Parent=MsG0880041847.01.T01
Chr8 CDS 177321 177393 177321 ID=MsG0880041847.01.T01:cds;Parent=MsG0880041847.01.T01
Chr8 CDS 176578 176609 176578 ID=MsG0880041847.01.T01:cds;Parent=MsG0880041847.01.T01
Chr8 CDS 175961 176079 175961 ID=MsG0880041847.01.T01:cds;Parent=MsG0880041847.01.T01
Chr8 CDS 175660 175874 175660 ID=MsG0880041847.01.T01:cds;Parent=MsG0880041847.01.T01
Chr8 CDS 175398 175507 175398 ID=MsG0880041847.01.T01:cds;Parent=MsG0880041847.01.T01
Chr8 CDS 174860 174968 174860 ID=MsG0880041847.01.T01:cds;Parent=MsG0880041847.01.T01
Chr8 CDS 174678 174754 174678 ID=MsG0880041847.01.T01:cds;Parent=MsG0880041847.01.T01
Chr8 CDS 174069 174188 174069 ID=MsG0880041847.01.T01:cds;Parent=MsG0880041847.01.T01
Chr8 three_prime_UTR 173917 174068 173917 ID=MsG0880041847.01.T01:three_prime_utr;Parent=MsG0880041847.01.T01
Gene Sequence

>MsG0880041847.01.T01

ATGCTACCGCTCTTATCTTCACCATCTTCTTCTTCTTCTTCTTCTTCTTCTTCACTCATGCAATCTTTTCCATGGGGCGATGTTCCATTGCACTATAGTTTAGGGAACCTGATTTGGTATTCTGATAAAGCATTTCCTTTTTTGGCAGTAAAATTCCTTTGTACAGTACAAGGACAAGGACAATCAACTCATGGAGGCACTAATAAAAAACCAAAGGATTCCATAGTGCAGGATAACACCATATTACATCCTGAGAAAGTATTAAGGAGGAAACTTGCGCTTTCTGTTTTGGTCTCAACTTGTGTTTTTCCAACTTTATCTTCTCATGCAAAGACCAAAAATATGAATCCGTATAATGAAAAACGTGTCTTGCAACAAAACAAGAATATACAAAAACAAAACAACGCACCAGATGACTTCCCAAATTTTATTAGAGAAGGTTTTGAAGTCAAAGTAATAGCACCAGATAACTATATAACGCGTGATTCGGGGCTCATTTACCGAGATTTTGAAGTTGGTACAGGTGATTGTCCAAAGGATGGTCAGCAGGTCACATTTCACTATGTTGGCTATAATGAATCCGGCCGGCGTATTGACAGCACTTATTTACAGGGTTCTCCGGCCAAAATTCGCATGGGTAACAAGGCATTGGTTCCAGGATTTGAGGAAGGAATTAGAGACATGAGAGCAGGTGGAAAGAGAAGAATAATTATTCCTCCTGATCTTGGACCCCCGGTAGGACCTTCAACATTTTTCAGCTCAAAACAATTTGAAGTTTTTGATGTTGAATTATTAAGCATCCAAAACTGTGAAAGAAGAACCATAGGATTTTACTCTGATGTTGTATGCAATTGA

Protein sequence

>MsG0880041847.01.T01

MLPLLSSPSSSSSSSSSSLMQSFPWGDVPLHYSLGNLIWYSDKAFPFLAVKFLCTVQGQGQSTHGGTNKKPKDSIVQDNTILHPEKVLRRKLALSVLVSTCVFPTLSSHAKTKNMNPYNEKRVLQQNKNIQKQNNAPDDFPNFIREGFEVKVIAPDNYITRDSGLIYRDFEVGTGDCPKDGQQVTFHYVGYNESGRRIDSTYLQGSPAKIRMGNKALVPGFEEGIRDMRAGGKRRIIIPPDLGPPVGPSTFFSSKQFEVFDVELLSIQNCERRTIGFYSDVVCN*