AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380016349.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016349.01.T01 MTR_3g087950 97.423 582 15 0 1 582 1 582 0.0 1167
MsG0380016349.01.T01 MTR_3g466000 75.045 561 139 1 22 582 18 577 0.0 854
MsG0380016349.01.T01 MTR_6g090280 52.028 567 259 4 28 582 58 623 0.0 551
MsG0380016349.01.T01 MTR_6g090280 50.840 476 222 3 118 582 1 475 1.49e-167 485
MsG0380016349.01.T01 MTR_6g090280 54.756 431 192 3 28 456 58 487 1.27e-151 446
MsG0380016349.01.T01 MTR_5g084180 86.792 106 14 0 11 116 17 122 1.47e-39 141
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016349.01.T01 AT4G39640 63.903 579 199 5 5 581 1 571 0.0 746
MsG0380016349.01.T01 AT4G39640 63.903 579 199 5 5 581 1 571 0.0 746
MsG0380016349.01.T01 AT4G39650 63.823 586 198 7 1 581 1 577 0.0 727
MsG0380016349.01.T01 AT4G29210 49.298 570 267 6 32 582 71 637 0.0 557
MsG0380016349.01.T01 AT4G29210 51.402 428 204 4 32 456 71 497 6.90e-156 457
MsG0380016349.01.T01 AT1G69820 71.556 225 63 1 286 509 1 225 2.05e-114 340

Find 165 sgRNAs with CRISPR-Local

Find 271 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGCTTCCTTCAGGCCTTTC+TGG 0.074565 3:-82298795 MsG0380016349.01.T01:CDS
TCCTACACCTTTATTTATTT+TGG 0.084530 3:+82297249 None:intergenic
TTGAACTTTCTGCTAATATC+AGG 0.251199 3:-82297360 MsG0380016349.01.T01:CDS
TGTGGCTGCTGCTCTTTGTT+TGG 0.260299 3:-82300312 MsG0380016349.01.T01:CDS
CATGTCCTTCAGAGCCTTGC+TGG 0.265745 3:-82297316 MsG0380016349.01.T01:CDS
GCAGGAAAACCACCCTTTCT+TGG 0.267405 3:+82297205 None:intergenic
GCGGTGCCTTTATGCTTCTT+AGG 0.281278 3:-82300256 MsG0380016349.01.T01:CDS
TCAGTTATATTTACAAAATC+AGG 0.292693 3:+82298702 None:intergenic
ATGTGGCTTGATGTGTATTT+TGG 0.296049 3:-82296972 MsG0380016349.01.T01:three_prime_UTR
CCTCCTCTTTGTTTCCAGTT+TGG 0.297674 3:-82300480 MsG0380016349.01.T01:CDS
TGGCTGCAGTTATGTTATTA+TGG 0.301381 3:-82300517 MsG0380016349.01.T01:CDS
TCAAAGCCTCGATTTCTCTA+TGG 0.303562 3:+82298760 None:intergenic
CTTGGTATGCCTCCTCCTTC+AGG 0.309472 3:-82299154 MsG0380016349.01.T01:CDS
CTAAGAGCAATTGCAAAGTT+TGG 0.312938 3:-82299325 MsG0380016349.01.T01:CDS
GTGGCTGCTGCTCTTTGTTT+GGG 0.314878 3:-82300311 MsG0380016349.01.T01:CDS
ACTTATGATTCAAGTCATTA+TGG 0.319436 3:-82298612 MsG0380016349.01.T01:CDS
GGACATGGCCCTTACTTCTA+AGG 0.324451 3:+82297332 None:intergenic
TCAGGCCTTTCTGGTTCCCT+TGG 0.331021 3:-82298786 MsG0380016349.01.T01:CDS
CTTCCCCGGCACGACGAAAT+TGG 0.336481 3:+82298278 None:intergenic
GGAGCAGTTACAGAAGAAAA+AGG 0.352470 3:+82298022 None:intergenic
GATCGTCGATGCTCGAAGAT+TGG 0.359812 3:-82300377 MsG0380016349.01.T01:CDS
TTTCAGTTAGAATGAATCTT+GGG 0.364796 3:-82298728 MsG0380016349.01.T01:CDS
GGCCTCTCGGTAGCAGTTCC+AGG 0.369742 3:-82299589 MsG0380016349.01.T01:CDS
CAGGCCTTTCTGGTTCCCTT+GGG 0.372651 3:-82298785 MsG0380016349.01.T01:CDS
ACTACAGTAAATTCGTATTT+CGG 0.375583 3:-82298408 MsG0380016349.01.T01:CDS
CCAAGAAAATCTATAGATAT+AGG 0.377085 3:+82299187 None:intergenic
TTTCTTCTGTAACTGCTCCT+AGG 0.377805 3:-82298018 MsG0380016349.01.T01:CDS
ATCGTCGATGCTCGAAGATT+GGG 0.379068 3:-82300376 MsG0380016349.01.T01:CDS
GAACATTCCAAAATAAATAA+AGG 0.380999 3:-82297256 MsG0380016349.01.T01:CDS
CCTGCCAATTTCGTCGTGCC+GGG 0.393581 3:-82298282 MsG0380016349.01.T01:CDS
GTTAAAGATGTTCAGAAGGC+TGG 0.400636 3:-82299262 MsG0380016349.01.T01:CDS
TCCTGCCAATTTCGTCGTGC+CGG 0.409726 3:-82298283 MsG0380016349.01.T01:CDS
ATGTGGTATATTATGAGAAC+TGG 0.410439 3:-82297405 MsG0380016349.01.T01:CDS
GCACAATATGAGCTTCCTTC+AGG 0.410702 3:-82298804 MsG0380016349.01.T01:CDS
GGCAGAAGCAGATGCCAAAC+TGG 0.410790 3:+82300466 None:intergenic
ATGTACTGTGGCTCCACATA+TGG 0.411147 3:+82296919 None:intergenic
AGTTCAGCTTCAAGTGGTAT+TGG 0.425763 3:-82300281 MsG0380016349.01.T01:CDS
TTCTTCTGTAACTGCTCCTA+GGG 0.425863 3:-82298017 MsG0380016349.01.T01:CDS
GCTTTGTATGGTGGAATAGT+TGG 0.425952 3:-82299295 MsG0380016349.01.T01:CDS
ATGCTTCTTAGGTTAGCTAA+TGG 0.427061 3:-82300245 MsG0380016349.01.T01:CDS
ACCCTTTCTTGGATCACTTA+CGG 0.430481 3:+82297216 None:intergenic
CTCGGGACTCCAGATCAATT+AGG 0.436728 3:+82297087 None:intergenic
AGCTAACCTAAGAAGCATAA+AGG 0.439391 3:+82300250 None:intergenic
TTTCTTGGATTAAAGATCCT+TGG 0.439838 3:-82299172 MsG0380016349.01.T01:CDS
ATCAGGAGTCCTAATTGATC+TGG 0.440048 3:-82297096 MsG0380016349.01.T01:three_prime_UTR
CAGGGAAAGCCTTAGAAGTA+AGG 0.450851 3:-82297341 MsG0380016349.01.T01:CDS
TTTGGTCCACAAGCTTTGTA+TGG 0.452119 3:-82299307 MsG0380016349.01.T01:CDS
TTCTCATAATATACCACATT+AGG 0.453122 3:+82297409 None:intergenic
GAATCACTTTGTCAAAGGAA+TGG 0.453749 3:-82298047 MsG0380016349.01.T01:CDS
TTTCAACACTTGAGCAAACT+TGG 0.459644 3:+82298656 None:intergenic
TGAAGGCCAGCTAGTTCTCC+TGG 0.462220 3:+82299571 None:intergenic
TTGAGTACTATTCCTGTACT+TGG 0.467003 3:+82298369 None:intergenic
TGCTCCTAGGGTCTATCATC+AGG 0.468787 3:-82298005 MsG0380016349.01.T01:intron
AAAGTACACTGTTAAACAAA+AGG 0.472586 3:-82299212 MsG0380016349.01.T01:CDS
ACGACGAAATTGGCAGGAGC+AGG 0.472614 3:+82298288 None:intergenic
CAGTTAAGGTCGAATAGATC+AGG 0.479105 3:-82297113 MsG0380016349.01.T01:three_prime_UTR
AACACTACTTTGAAGGCAAA+TGG 0.481370 3:-82299613 MsG0380016349.01.T01:CDS
TCCTTCAGAGCCTTGCTGGT+GGG 0.483076 3:-82297312 MsG0380016349.01.T01:CDS
ATATCTCACTTAAACTTAAG+TGG 0.484133 3:-82297147 MsG0380016349.01.T01:three_prime_UTR
TAACTTACCAGCATCATTTG+AGG 0.485318 3:+82299127 None:intergenic
TGGTGGCAACACTACTTTGA+AGG 0.485618 3:-82299620 MsG0380016349.01.T01:CDS
CGAATTTACTGTAGTGGTCA+TGG 0.494343 3:+82298416 None:intergenic
AGGGAAGTGAAAGCAGTAGT+AGG 0.496539 3:-82298118 MsG0380016349.01.T01:CDS
CAGTGATTCTTGCTAGTAGA+GGG 0.498771 3:-82299495 MsG0380016349.01.T01:CDS
GAGAACTGGACAACAGTGAC+CGG 0.499140 3:-82297391 MsG0380016349.01.T01:CDS
CGATTTCTCTATGGATCCCA+AGG 0.500870 3:+82298769 None:intergenic
AACAACATGGAAAGCTTCCA+TGG 0.507183 3:-82299537 MsG0380016349.01.T01:CDS
TCCATCTGCATGTGAAGGTA+TGG 0.508355 3:+82299460 None:intergenic
CCCGGCACGACGAAATTGGC+AGG 0.508773 3:+82298282 None:intergenic
TGGTCAATGAGCTTCAGTTA+AGG 0.509429 3:-82297127 MsG0380016349.01.T01:three_prime_UTR
TTTGATCGCTTTCATTAACT+AGG 0.510500 3:-82297064 MsG0380016349.01.T01:three_prime_UTR
GAAGTAATCATTGCTCATCA+TGG 0.511179 3:-82300416 MsG0380016349.01.T01:CDS
TAGCTGGCCTTCACAAGGCA+TGG 0.517657 3:-82299561 MsG0380016349.01.T01:CDS
GATGATAATGGTCTCTTCCC+CGG 0.518164 3:+82298264 None:intergenic
CTTCGAGCATCGACGATCAT+CGG 0.519186 3:+82300382 None:intergenic
TCCCACCAGCAAGGCTCTGA+AGG 0.522177 3:+82297311 None:intergenic
GTCACCAACTATTGTTCTCA+AGG 0.525838 3:-82298238 MsG0380016349.01.T01:intron
ACATGCAGTGGATGCAGCTG+TGG 0.526599 3:-82300330 MsG0380016349.01.T01:CDS
GGCCGTAAGTGATCCAAGAA+AGG 0.530949 3:-82297218 MsG0380016349.01.T01:CDS
GTCCTTCAGAGCCTTGCTGG+TGG 0.531940 3:-82297313 MsG0380016349.01.T01:CDS
TTTAGTTAAAGATGTTCAGA+AGG 0.532577 3:-82299266 MsG0380016349.01.T01:CDS
GTTGGTGACATGGATGATAA+TGG 0.536093 3:+82298252 None:intergenic
ATATGTTATAATAAGAAACT+AGG 0.536973 3:-82299355 MsG0380016349.01.T01:CDS
GGGATGGATGTTATCCAAGA+AGG 0.538671 3:-82300356 MsG0380016349.01.T01:CDS
TTAAGTTTAAGTGAGATATG+AGG 0.539640 3:+82297151 None:intergenic
TGAACTTTCTGCTAATATCA+GGG 0.539929 3:-82297359 MsG0380016349.01.T01:CDS
TCAGCTTCAAGTGGTATTGG+TGG 0.540011 3:-82300278 MsG0380016349.01.T01:CDS
GCTTCAAGTGGTATTGGTGG+CGG 0.540106 3:-82300275 MsG0380016349.01.T01:CDS
TTAATGAAAGCGATCAAACT+CGG 0.540330 3:+82297069 None:intergenic
GGTATGCCTCCTCCTTCAGG+TGG 0.549489 3:-82299151 MsG0380016349.01.T01:CDS
AGGTGGGCCTCAAATGATGC+TGG 0.553365 3:-82299134 MsG0380016349.01.T01:intron
GGCATTACAAGTCTATTCCA+TGG 0.553522 3:+82299520 None:intergenic
GATTATTGCTGCAACTTCAG+AGG 0.553592 3:-82298077 MsG0380016349.01.T01:CDS
AGAATTGAAATAATTAAATG+TGG 0.555500 3:-82296989 MsG0380016349.01.T01:three_prime_UTR
TGCTCCTCTTCATGCTTCCA+AGG 0.556551 3:-82300192 MsG0380016349.01.T01:intron
TGAGGCCCACCTGAAGGAGG+AGG 0.557428 3:+82299145 None:intergenic
GAAGGCAAATGGTGGCCTCT+CGG 0.562410 3:-82299602 MsG0380016349.01.T01:CDS
GGCTGGAGGGATATTGACAT+TGG 0.564181 3:-82299245 MsG0380016349.01.T01:CDS
ATCATTTGAGGCCCACCTGA+AGG 0.564377 3:+82299139 None:intergenic
AGGGAAAGCCTTAGAAGTAA+GGG 0.565321 3:-82297340 MsG0380016349.01.T01:CDS
GCCGTAAGTGATCCAAGAAA+GGG 0.566039 3:-82297217 MsG0380016349.01.T01:CDS
ACAATACTTTCACCAAGTAC+AGG 0.566632 3:-82298381 MsG0380016349.01.T01:CDS
CAGCAAGGCTCTGAAGGACA+TGG 0.566832 3:+82297317 None:intergenic
GCAGTTCCAGGAGAACTAGC+TGG 0.567970 3:-82299577 MsG0380016349.01.T01:CDS
GTTGTTCCCATGCCTTGTGA+AGG 0.569302 3:+82299554 None:intergenic
GGTCCACAAGCTTTGTATGG+TGG 0.569960 3:-82299304 MsG0380016349.01.T01:CDS
AGAACCTTGAGAACAATAGT+TGG 0.571389 3:+82298234 None:intergenic
TGGAATCAGATAAATGATCA+TGG 0.571447 3:-82298483 MsG0380016349.01.T01:CDS
AATAGTACTCAACAATGAGA+TGG 0.573475 3:-82298358 MsG0380016349.01.T01:CDS
AAAGCAGTAGTAGGTGCAAG+TGG 0.574642 3:-82298109 MsG0380016349.01.T01:CDS
GGATCCCAAGGGAACCAGAA+AGG 0.575413 3:+82298781 None:intergenic
GGATGGATGTTATCCAAGAA+GGG 0.577595 3:-82300355 MsG0380016349.01.T01:CDS
TCAGTGATTCTTGCTAGTAG+AGG 0.579772 3:-82299496 MsG0380016349.01.T01:CDS
GTATGCCTCCTCCTTCAGGT+GGG 0.584516 3:-82299150 MsG0380016349.01.T01:CDS
ACCATACCTTCACATGCAGA+TGG 0.585318 3:-82299461 MsG0380016349.01.T01:CDS
CATGGAAAACTCTTGAAAGC+AGG 0.586551 3:-82299382 MsG0380016349.01.T01:CDS
TCTTGAAATACAGCTACTAG+TGG 0.586782 3:+82297009 None:intergenic
AGAACTGGACAACAGTGACC+GGG 0.586985 3:-82297390 MsG0380016349.01.T01:CDS
AGAAAGTTCAAAGTGGTCCC+CGG 0.588081 3:+82297372 None:intergenic
AGCAGTTTCTCTCATATCAA+AGG 0.589334 3:+82300211 None:intergenic
TACAGCTACTAGTGGGACCA+AGG 0.592143 3:+82297017 None:intergenic
TAATGAAAGCGATCAAACTC+GGG 0.593238 3:+82297070 None:intergenic
AGCTGGCCTTCACAAGGCAT+GGG 0.593280 3:-82299560 MsG0380016349.01.T01:CDS
ACGAAATTGGCAGGAGCAGG+CGG 0.593667 3:+82298291 None:intergenic
TCAAATATATCGAATGACAT+TGG 0.595472 3:-82299427 MsG0380016349.01.T01:CDS
ATTCCACCATACAAAGCTTG+TGG 0.596836 3:+82299301 None:intergenic
GACATATTGTCCCACCAGCA+AGG 0.600088 3:+82297302 None:intergenic
CTGCCAATTTCGTCGTGCCG+GGG 0.602376 3:-82298281 MsG0380016349.01.T01:CDS
TTCAGTTAGAATGAATCTTG+GGG 0.603643 3:-82298727 MsG0380016349.01.T01:CDS
AACAAAGAGGAGGCATGCGA+TGG 0.603767 3:+82300490 None:intergenic
AAAGATGTTCAGAAGGCTGG+AGG 0.604111 3:-82299259 MsG0380016349.01.T01:CDS
GTTAGCTAATGGTGTAGCAA+AGG 0.604530 3:-82300234 MsG0380016349.01.T01:CDS
TCCAAAATAAATAAAGGTGT+AGG 0.605868 3:-82297250 MsG0380016349.01.T01:CDS
AGTAGTGTATTTGCACCACA+TGG 0.606382 3:-82299400 MsG0380016349.01.T01:CDS
AGGGAACCAGAAAGGCCTGA+AGG 0.606461 3:+82298789 None:intergenic
CATACCTGATGATAGACCCT+AGG 0.617223 3:+82298001 None:intergenic
GAAATACGAATTTACTGTAG+TGG 0.620251 3:+82298410 None:intergenic
TATGATTCAAGTCATTATGG+TGG 0.621095 3:-82298609 MsG0380016349.01.T01:CDS
ATTTGAGGCCCACCTGAAGG+AGG 0.625374 3:+82299142 None:intergenic
AGAACTAGCTGGCCTTCACA+AGG 0.628697 3:-82299566 MsG0380016349.01.T01:CDS
CTACTAGCAAGAATCACTGA+TGG 0.635765 3:+82299499 None:intergenic
TAAAGGTGTAGGAAAGCTTG+TGG 0.635981 3:-82297239 MsG0380016349.01.T01:CDS
CACAAGGCATGGGAACAACA+TGG 0.636359 3:-82299550 MsG0380016349.01.T01:CDS
GTTGTCAGTTCAGCTTCAAG+TGG 0.641203 3:-82300287 MsG0380016349.01.T01:CDS
ACAGCTACTAGTGGGACCAA+GGG 0.652254 3:+82297018 None:intergenic
CTGAAGGAGGAGGCATACCA+AGG 0.655629 3:+82299155 None:intergenic
CTTGAAATACAGCTACTAGT+GGG 0.656621 3:+82297010 None:intergenic
AGTACCTTGGAAGCATGAAG+AGG 0.656955 3:+82300188 None:intergenic
AAGATGTTCAGAAGGCTGGA+GGG 0.658153 3:-82299258 MsG0380016349.01.T01:CDS
ATGCCAAACTGGAAACAAAG+AGG 0.660398 3:+82300477 None:intergenic
TGGGATCCATAGAGAAATCG+AGG 0.663794 3:-82298766 MsG0380016349.01.T01:CDS
GCAGTAGTAGGTGCAAGTGG+AGG 0.669154 3:-82298106 MsG0380016349.01.T01:CDS
TCGATGCTCGAAGATTGGGA+TGG 0.670453 3:-82300372 MsG0380016349.01.T01:CDS
ACTACTTTGAAGGCAAATGG+TGG 0.671606 3:-82299610 MsG0380016349.01.T01:CDS
GATGGATGTTATCCAAGAAG+GGG 0.675440 3:-82300354 MsG0380016349.01.T01:CDS
CCAAACTGGAAACAAAGAGG+AGG 0.676783 3:+82300480 None:intergenic
TATGCAGCTGATACCTAATG+TGG 0.679757 3:-82297422 MsG0380016349.01.T01:intron
TGAGATATGAGGTGACAATG+TGG 0.681915 3:+82297162 None:intergenic
GAGAACAATAGTTGGTGACA+TGG 0.682147 3:+82298242 None:intergenic
TATTAGCAGAAAGTTCAAAG+TGG 0.683177 3:+82297365 None:intergenic
GTAAGTGATCCAAGAAAGGG+TGG 0.686908 3:-82297214 MsG0380016349.01.T01:CDS
CTCCTGGAACTGCTACCGAG+AGG 0.707943 3:+82299587 None:intergenic
ATGGATGTTATCCAAGAAGG+GGG 0.708511 3:-82300353 MsG0380016349.01.T01:CDS
GATTTCTCTATGGATCCCAA+GGG 0.710706 3:+82298770 None:intergenic
GAACTGGACAACAGTGACCG+GGG 0.715377 3:-82297389 MsG0380016349.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGTTTGTATATAAATAATTT+AGG + Chr3:82299746-82299765 None:intergenic 10.0%
!!! TATTTTTAAAAAATGATCAA+TGG + Chr3:82299883-82299902 None:intergenic 10.0%
!! AGAATTGAAATAATTAAATG+TGG - Chr3:82300435-82300454 MsG0380016349.01.T01:CDS 15.0%
!! ATATGTTATAATAAGAAACT+AGG - Chr3:82298069-82298088 MsG0380016349.01.T01:CDS 15.0%
!! TAAAAATATGAAGATAAATG+TGG - Chr3:82299895-82299914 MsG0380016349.01.T01:intron 15.0%
!! TCCTATTTATAAAAATAGAT+GGG - Chr3:82298367-82298386 MsG0380016349.01.T01:CDS 15.0%
!! TTAACTTAGTAAAGTATAAT+TGG - Chr3:82299770-82299789 MsG0380016349.01.T01:intron 15.0%
!! TTCCTATTTATAAAAATAGA+TGG - Chr3:82298366-82298385 MsG0380016349.01.T01:CDS 15.0%
!!! TAACTCAATATTTTAAAAAC+TGG + Chr3:82298505-82298524 None:intergenic 15.0%
!! AAGAAAAATTTAATGTACTG+TGG + Chr3:82300520-82300539 None:intergenic 20.0%
!! ACATGAAAAATAGTTATAAG+TGG - Chr3:82299638-82299657 MsG0380016349.01.T01:intron 20.0%
!! ACTGCAATTAATTAAATTAC+TGG + Chr3:82298894-82298913 None:intergenic 20.0%
!! CATGAAAAATAGTTATAAGT+GGG - Chr3:82299639-82299658 MsG0380016349.01.T01:intron 20.0%
!! CCACTATTTAATTAAAATCT+TGG + Chr3:82297302-82297321 None:intergenic 20.0%
!! CCTATTTATAAAAATAGATG+GGG - Chr3:82298368-82298387 MsG0380016349.01.T01:CDS 20.0%
!! CTATTTATAAAAATAGATGG+GGG - Chr3:82298369-82298388 MsG0380016349.01.T01:CDS 20.0%
!! GAACATTCCAAAATAAATAA+AGG - Chr3:82300168-82300187 MsG0380016349.01.T01:intron 20.0%
!! TCAGTTATATTTACAAAATC+AGG + Chr3:82298725-82298744 None:intergenic 20.0%
!!! AGATTTTAATTAAATAGTGG+CGG - Chr3:82297302-82297321 MsG0380016349.01.T01:CDS 20.0%
!!! CATATTTTTTGCTTATATTC+TGG - Chr3:82299469-82299488 MsG0380016349.01.T01:CDS 20.0%
!!! CCAAGATTTTAATTAAATAG+TGG - Chr3:82297299-82297318 MsG0380016349.01.T01:CDS 20.0%
!!! TTTTCTCTGTCAATAAAAAA+GGG - Chr3:82298554-82298573 MsG0380016349.01.T01:intron 20.0%
!!! TTTTTCTCTGTCAATAAAAA+AGG - Chr3:82298553-82298572 MsG0380016349.01.T01:intron 20.0%
! AAAGTACACTGTTAAACAAA+AGG - Chr3:82298212-82298231 MsG0380016349.01.T01:intron 25.0%
! ACTACAGTAAATTCGTATTT+CGG - Chr3:82299016-82299035 MsG0380016349.01.T01:intron 25.0%
! ACTTATGATTCAAGTCATTA+TGG - Chr3:82298812-82298831 MsG0380016349.01.T01:CDS 25.0%
! ATATCTCACTTAAACTTAAG+TGG - Chr3:82300277-82300296 MsG0380016349.01.T01:CDS 25.0%
! CAATAACATCATTAAAACCT+AGG - Chr3:82299560-82299579 MsG0380016349.01.T01:CDS 25.0%
! CCAAGAAAATCTATAGATAT+AGG + Chr3:82298240-82298259 None:intergenic 25.0%
! GAAAAAATGGATGTATCATA+TGG + Chr3:82297773-82297792 None:intergenic 25.0%
! TCAAAAATTATTCTGCAATG+TGG + Chr3:82299217-82299236 None:intergenic 25.0%
! TCAAATATATCGAATGACAT+TGG - Chr3:82297997-82298016 MsG0380016349.01.T01:intron 25.0%
! TCCTTATATAGAAAAGAACA+CGG + Chr3:82298328-82298347 None:intergenic 25.0%
! TTAAGTTTAAGTGAGATATG+AGG + Chr3:82300276-82300295 None:intergenic 25.0%
! TTCTCATAATATACCACATT+AGG + Chr3:82300018-82300037 None:intergenic 25.0%
! TTTAGTTAAAGATGTTCAGA+AGG - Chr3:82298158-82298177 MsG0380016349.01.T01:intron 25.0%
! TTTCAGTTAGAATGAATCTT+GGG - Chr3:82298696-82298715 MsG0380016349.01.T01:CDS 25.0%
!! AATGAGAAGAGAAAATTTTG+AGG + Chr3:82297691-82297710 None:intergenic 25.0%
!! CCTATATCTATAGATTTTCT+TGG - Chr3:82298237-82298256 MsG0380016349.01.T01:intron 25.0%
!! TCCAAAATAAATAAAGGTGT+AGG - Chr3:82300174-82300193 MsG0380016349.01.T01:intron 25.0%
!! TGTAATATTTGTGTTACTAC+AGG - Chr3:82299281-82299300 MsG0380016349.01.T01:CDS 25.0%
!! TTCTAGAAATTTATTCTCTG+TGG + Chr3:82297591-82297610 None:intergenic 25.0%
!! TTTTCAGTTAGAATGAATCT+TGG - Chr3:82298695-82298714 MsG0380016349.01.T01:CDS 25.0%
!!! ATAACATTTTGAGTTTTCCT+AGG + Chr3:82299580-82299599 None:intergenic 25.0%
!!! CCCCATCTATTTTTATAAAT+AGG + Chr3:82298371-82298390 None:intergenic 25.0%
!!! TCCTACACCTTTATTTATTT+TGG + Chr3:82300178-82300197 None:intergenic 25.0%
AATAGTACTCAACAATGAGA+TGG - Chr3:82299066-82299085 MsG0380016349.01.T01:intron 30.0%
AGTAAGAAAAGTCTAGTAGA+TGG - Chr3:82297498-82297517 MsG0380016349.01.T01:intron 30.0%
ATCTTGGAAACTATATGCAA+AGG + Chr3:82297286-82297305 None:intergenic 30.0%
ATGGAATCTTACATTTGTTC+TGG - Chr3:82299443-82299462 MsG0380016349.01.T01:CDS 30.0%
ATGTGGTATATTATGAGAAC+TGG - Chr3:82300019-82300038 MsG0380016349.01.T01:intron 30.0%
ATTCAGAGCTATGTGAAATA+TGG - Chr3:82299501-82299520 MsG0380016349.01.T01:CDS 30.0%
ATTTGTTTGGAAAAACCATG+TGG - Chr3:82297439-82297458 MsG0380016349.01.T01:intron 30.0%
CATACATATCCTGGAAAAAA+TGG + Chr3:82297786-82297805 None:intergenic 30.0%
GAAATACGAATTTACTGTAG+TGG + Chr3:82299017-82299036 None:intergenic 30.0%
GATATAATTGACACATGGTT+AGG - Chr3:82297523-82297542 MsG0380016349.01.T01:intron 30.0%
TAAAAAATATGCTACTCCCT+TGG - Chr3:82300390-82300409 MsG0380016349.01.T01:CDS 30.0%
TATGATTCAAGTCATTATGG+TGG - Chr3:82298815-82298834 MsG0380016349.01.T01:CDS 30.0%
TATTAGCAGAAAGTTCAAAG+TGG + Chr3:82300062-82300081 None:intergenic 30.0%
TCATCAGTTATGTGATTGAT+TGG + Chr3:82299957-82299976 None:intergenic 30.0%
TGAACTTTCTGCTAATATCA+GGG - Chr3:82300065-82300084 MsG0380016349.01.T01:intron 30.0%
TGGAATCAGATAAATGATCA+TGG - Chr3:82298941-82298960 MsG0380016349.01.T01:intron 30.0%
TGGATGATATAATTGACACA+TGG - Chr3:82297518-82297537 MsG0380016349.01.T01:intron 30.0%
TTAATGAAAGCGATCAAACT+CGG + Chr3:82300358-82300377 None:intergenic 30.0%
TTCAGTTAGAATGAATCTTG+GGG - Chr3:82298697-82298716 MsG0380016349.01.T01:CDS 30.0%
TTCATTCATTCCCTCTTTAT+AGG - Chr3:82298918-82298937 MsG0380016349.01.T01:intron 30.0%
TTGAACTTTCTGCTAATATC+AGG - Chr3:82300064-82300083 MsG0380016349.01.T01:intron 30.0%
TTTCTTGGATTAAAGATCCT+TGG - Chr3:82298252-82298271 MsG0380016349.01.T01:CDS 30.0%
TTTGATCGCTTTCATTAACT+AGG - Chr3:82300360-82300379 MsG0380016349.01.T01:CDS 30.0%
! ACCGTGTTCTTTTCTATATA+AGG - Chr3:82298324-82298343 MsG0380016349.01.T01:CDS 30.0%
! CTTTTGAATCACTTTGTCAA+AGG - Chr3:82299372-82299391 MsG0380016349.01.T01:CDS 30.0%
!! GTTTAACAGTGTACTTTTTG+AGG + Chr3:82298209-82298228 None:intergenic 30.0%
!! TGTTTTTGTGTGTCCATTTT+TGG + Chr3:82296982-82297001 None:intergenic 30.0%
!! TTATGTGATTGATTGGTTTG+AGG + Chr3:82299950-82299969 None:intergenic 30.0%
!! TTTTAATTAAATAGTGGCGG+TGG - Chr3:82297305-82297324 MsG0380016349.01.T01:CDS 30.0%
!!! ATGATACATCCATTTTTTCC+AGG - Chr3:82297774-82297793 MsG0380016349.01.T01:intron 30.0%
!!! CATTTTTTCCAGGATATGTA+TGG - Chr3:82297784-82297803 MsG0380016349.01.T01:intron 30.0%
!!! TCCTTCGAAACATTTTTTAC+AGG + Chr3:82299106-82299125 None:intergenic 30.0%
AAAAACTCAAGTGCCATATG+TGG - Chr3:82300492-82300511 MsG0380016349.01.T01:CDS 35.0%
AACCCAACTGCAATGTAAAT+GGG - Chr3:82298419-82298438 MsG0380016349.01.T01:CDS 35.0%
AATGAAAAGGACACATGTAG+AGG - Chr3:82297470-82297489 MsG0380016349.01.T01:intron 35.0%
ACAATACTTTCACCAAGTAC+AGG - Chr3:82299043-82299062 MsG0380016349.01.T01:intron 35.0%
AGAACCTTGAGAACAATAGT+TGG + Chr3:82299193-82299212 None:intergenic 35.0%
AGCAGTTTCTCTCATATCAA+AGG + Chr3:82297216-82297235 None:intergenic 35.0%
ATCCCATTTACATTGCAGTT+GGG + Chr3:82298424-82298443 None:intergenic 35.0%
ATCTACTTGTAGTCTCATCT+TGG - Chr3:82299598-82299617 MsG0380016349.01.T01:CDS 35.0%
ATCTGATTCCACCTATAAAG+AGG + Chr3:82298932-82298951 None:intergenic 35.0%
ATTCATTCCCTCTTTATAGG+TGG - Chr3:82298921-82298940 MsG0380016349.01.T01:intron 35.0%
CTAAGAGCAATTGCAAAGTT+TGG - Chr3:82298099-82298118 MsG0380016349.01.T01:CDS 35.0%
CTTGAAATACAGCTACTAGT+GGG + Chr3:82300417-82300436 None:intergenic 35.0%
GAAGTAATCATTGCTCATCA+TGG - Chr3:82297008-82297027 MsG0380016349.01.T01:three_prime_UTR 35.0%
GAATCACTTTGTCAAAGGAA+TGG - Chr3:82299377-82299396 MsG0380016349.01.T01:CDS 35.0%
GCCTGTAAAAAATGTTTCGA+AGG - Chr3:82299102-82299121 MsG0380016349.01.T01:intron 35.0%
TAACTTACCAGCATCATTTG+AGG + Chr3:82298300-82298319 None:intergenic 35.0%
TAATGAAAGCGATCAAACTC+GGG + Chr3:82300357-82300376 None:intergenic 35.0%
TCTGATTCCACCTATAAAGA+GGG + Chr3:82298931-82298950 None:intergenic 35.0%
TCTTGAAATACAGCTACTAG+TGG + Chr3:82300418-82300437 None:intergenic 35.0%
TGAGAAATTAACTCACCGTA+TGG - Chr3:82299974-82299993 MsG0380016349.01.T01:intron 35.0%
TGGCTGCAGTTATGTTATTA+TGG - Chr3:82296907-82296926 MsG0380016349.01.T01:three_prime_UTR 35.0%
TGTGGTGTAGAGAAATGAAA+AGG - Chr3:82297457-82297476 MsG0380016349.01.T01:intron 35.0%
TTGAGTACTATTCCTGTACT+TGG + Chr3:82299058-82299077 None:intergenic 35.0%
TTTCAACACTTGAGCAAACT+TGG + Chr3:82298771-82298790 None:intergenic 35.0%
TTTCATTTCTCTACACCACA+TGG + Chr3:82297457-82297476 None:intergenic 35.0%
! AACACTACTTTGAAGGCAAA+TGG - Chr3:82297811-82297830 MsG0380016349.01.T01:intron 35.0%
! AGCTAACCTAAGAAGCATAA+AGG + Chr3:82297177-82297196 None:intergenic 35.0%
! ATGCTTCTTAGGTTAGCTAA+TGG - Chr3:82297179-82297198 MsG0380016349.01.T01:exon 35.0%
! ATGTGGCTTGATGTGTATTT+TGG - Chr3:82300452-82300471 MsG0380016349.01.T01:CDS 35.0%
! ATTTGTGTTACTACAGGACA+GGG - Chr3:82299287-82299306 MsG0380016349.01.T01:CDS 35.0%
! TATTTGTGTTACTACAGGAC+AGG - Chr3:82299286-82299305 MsG0380016349.01.T01:CDS 35.0%
! TTTTTCCAGGATATGTATGG+TGG - Chr3:82297787-82297806 MsG0380016349.01.T01:intron 35.0%
!! TAAAAACTGGTTTGAACTGC+CGG + Chr3:82298492-82298511 None:intergenic 35.0%
!! TCCAAGGTACTTTTCAATCA+TGG - Chr3:82297248-82297267 MsG0380016349.01.T01:CDS 35.0%
!! TCCATGATTGAAAAGTACCT+TGG + Chr3:82297252-82297271 None:intergenic 35.0%
!!! AGTGTTTTGATATGTCAACG+CGG + Chr3:82297385-82297404 None:intergenic 35.0%
!!! CGAAACATTTTTTACAGGCA+TGG + Chr3:82299101-82299120 None:intergenic 35.0%
!!! TTTTTTCCATCTGCATGTGA+AGG + Chr3:82297972-82297991 None:intergenic 35.0%
AACAACATGGAAAGCTTCCA+TGG - Chr3:82297887-82297906 MsG0380016349.01.T01:intron 40.0%
ACCCTTTCTTGGATCACTTA+CGG + Chr3:82300211-82300230 None:intergenic 40.0%
AGGGAAAGCCTTAGAAGTAA+GGG - Chr3:82300084-82300103 MsG0380016349.01.T01:intron 40.0%
AGTAGTGTATTTGCACCACA+TGG - Chr3:82298024-82298043 MsG0380016349.01.T01:CDS 40.0%
AGTTCAGCTTCAAGTGGTAT+TGG - Chr3:82297143-82297162 MsG0380016349.01.T01:three_prime_UTR 40.0%
ATCAGGAGTCCTAATTGATC+TGG - Chr3:82300328-82300347 MsG0380016349.01.T01:CDS 40.0%
ATGCCAAACTGGAAACAAAG+AGG + Chr3:82296950-82296969 None:intergenic 40.0%
ATGGATGTTATCCAAGAAGG+GGG - Chr3:82297071-82297090 MsG0380016349.01.T01:three_prime_UTR 40.0%
ATTCCACCATACAAAGCTTG+TGG + Chr3:82298126-82298145 None:intergenic 40.0%
CAACCCAACTGCAATGTAAA+TGG - Chr3:82298418-82298437 MsG0380016349.01.T01:CDS 40.0%
CAGCTGCATAATCAACCATA+CGG + Chr3:82299992-82300011 None:intergenic 40.0%
CAGTGATTCTTGCTAGTAGA+GGG - Chr3:82297929-82297948 MsG0380016349.01.T01:intron 40.0%
CAGTTAAGGTCGAATAGATC+AGG - Chr3:82300311-82300330 MsG0380016349.01.T01:CDS 40.0%
CATGGAAAACTCTTGAAAGC+AGG - Chr3:82298042-82298061 MsG0380016349.01.T01:CDS 40.0%
CGAATTTACTGTAGTGGTCA+TGG + Chr3:82299011-82299030 None:intergenic 40.0%
CTACTAGCAAGAATCACTGA+TGG + Chr3:82297928-82297947 None:intergenic 40.0%
CTGTAACAGAAAGATGAGAG+TGG + Chr3:82298585-82298604 None:intergenic 40.0%
GATCCCATTTACATTGCAGT+TGG + Chr3:82298425-82298444 None:intergenic 40.0%
GATGACATAACTCCATACGT+AGG + Chr3:82299715-82299734 None:intergenic 40.0%
GATGGATGTTATCCAAGAAG+GGG - Chr3:82297070-82297089 MsG0380016349.01.T01:three_prime_UTR 40.0%
GATTATTGCTGCAACTTCAG+AGG - Chr3:82299347-82299366 MsG0380016349.01.T01:CDS 40.0%
GATTTCTCTATGGATCCCAA+GGG + Chr3:82298657-82298676 None:intergenic 40.0%
GGAGCAGTTACAGAAGAAAA+AGG + Chr3:82299405-82299424 None:intergenic 40.0%
GGATGGATGTTATCCAAGAA+GGG - Chr3:82297069-82297088 MsG0380016349.01.T01:three_prime_UTR 40.0%
GGCATTACAAGTCTATTCCA+TGG + Chr3:82297907-82297926 None:intergenic 40.0%
GTAAATGGGATCAAACCAAC+CGG - Chr3:82298433-82298452 MsG0380016349.01.T01:CDS 40.0%
GTCACCAACTATTGTTCTCA+AGG - Chr3:82299186-82299205 MsG0380016349.01.T01:CDS 40.0%
GTTAAAGATGTTCAGAAGGC+TGG - Chr3:82298162-82298181 MsG0380016349.01.T01:intron 40.0%
GTTAGCTAATGGTGTAGCAA+AGG - Chr3:82297190-82297209 MsG0380016349.01.T01:exon 40.0%
GTTGAACAACGATTGTACCA+CGG + Chr3:82298402-82298421 None:intergenic 40.0%
TATGCAGCTGATACCTAATG+TGG - Chr3:82300002-82300021 MsG0380016349.01.T01:intron 40.0%
TCAAAGCCTCGATTTCTCTA+TGG + Chr3:82298667-82298686 None:intergenic 40.0%
TCAGTGATTCTTGCTAGTAG+AGG - Chr3:82297928-82297947 MsG0380016349.01.T01:intron 40.0%
TCCATACGTAGGACTAAGTT+AGG + Chr3:82299704-82299723 None:intergenic 40.0%
TCCTAACTTAGTCCTACGTA+TGG - Chr3:82299700-82299719 MsG0380016349.01.T01:intron 40.0%
TGAGATATGAGGTGACAATG+TGG + Chr3:82300265-82300284 None:intergenic 40.0%
TGGTCAATGAGCTTCAGTTA+AGG - Chr3:82300297-82300316 MsG0380016349.01.T01:CDS 40.0%
TTCTTCTGTAACTGCTCCTA+GGG - Chr3:82299407-82299426 MsG0380016349.01.T01:CDS 40.0%
TTGAACAACGATTGTACCAC+GGG + Chr3:82298401-82298420 None:intergenic 40.0%
TTTCTTCTGTAACTGCTCCT+AGG - Chr3:82299406-82299425 MsG0380016349.01.T01:CDS 40.0%
! ACTACTTTGAAGGCAAATGG+TGG - Chr3:82297814-82297833 MsG0380016349.01.T01:intron 40.0%
! GAATTTTCTCAAATGCCTGC+AGG + Chr3:82300240-82300259 None:intergenic 40.0%
! GCTTTCAAGAGTTTTCCATG+TGG + Chr3:82298042-82298061 None:intergenic 40.0%
! GCTTTGTATGGTGGAATAGT+TGG - Chr3:82298129-82298148 MsG0380016349.01.T01:intron 40.0%
! TAAAGGTGTAGGAAAGCTTG+TGG - Chr3:82300185-82300204 MsG0380016349.01.T01:intron 40.0%
! TTTGGTCCACAAGCTTTGTA+TGG - Chr3:82298117-82298136 MsG0380016349.01.T01:CDS 40.0%
!! GAGAACAATAGTTGGTGACA+TGG + Chr3:82299185-82299204 None:intergenic 40.0%
!! GTTGGTGACATGGATGATAA+TGG + Chr3:82299175-82299194 None:intergenic 40.0%
AAAGATGTTCAGAAGGCTGG+AGG - Chr3:82298165-82298184 MsG0380016349.01.T01:intron 45.0%
AAAGCAGTAGTAGGTGCAAG+TGG - Chr3:82299315-82299334 MsG0380016349.01.T01:CDS 45.0%
AAGATGTTCAGAAGGCTGGA+GGG - Chr3:82298166-82298185 MsG0380016349.01.T01:intron 45.0%
ACCATACCTTCACATGCAGA+TGG - Chr3:82297963-82297982 MsG0380016349.01.T01:intron 45.0%
AGAAAGTTCAAAGTGGTCCC+CGG + Chr3:82300055-82300074 None:intergenic 45.0%
AGGGAAGTGAAAGCAGTAGT+AGG - Chr3:82299306-82299325 MsG0380016349.01.T01:CDS 45.0%
ATCGTCGATGCTCGAAGATT+GGG - Chr3:82297048-82297067 MsG0380016349.01.T01:three_prime_UTR 45.0%
ATGTACTGTGGCTCCACATA+TGG + Chr3:82300508-82300527 None:intergenic 45.0%
CAGGGAAAGCCTTAGAAGTA+AGG - Chr3:82300083-82300102 MsG0380016349.01.T01:intron 45.0%
CATACCTGATGATAGACCCT+AGG + Chr3:82299426-82299445 None:intergenic 45.0%
CCAAACTGGAAACAAAGAGG+AGG + Chr3:82296947-82296966 None:intergenic 45.0%
CGATTTCTCTATGGATCCCA+AGG + Chr3:82298658-82298677 None:intergenic 45.0%
CGCACTTGCAGACATTTGTT+TGG - Chr3:82297426-82297445 MsG0380016349.01.T01:intron 45.0%
CTAGGGTCTATCATCAGGTA+TGG - Chr3:82299424-82299443 MsG0380016349.01.T01:CDS 45.0%
GCACAATATGAGCTTCCTTC+AGG - Chr3:82298620-82298639 MsG0380016349.01.T01:CDS 45.0%
GCATCTGCTTCTGCCAAAAA+TGG - Chr3:82296966-82296985 MsG0380016349.01.T01:three_prime_UTR 45.0%
GCCGTAAGTGATCCAAGAAA+GGG - Chr3:82300207-82300226 MsG0380016349.01.T01:CDS 45.0%
GGATGTACAGCAAGATCACA+AGG - Chr3:82299916-82299935 MsG0380016349.01.T01:intron 45.0%
GGGATGGATGTTATCCAAGA+AGG - Chr3:82297068-82297087 MsG0380016349.01.T01:three_prime_UTR 45.0%
GTAAGTGATCCAAGAAAGGG+TGG - Chr3:82300210-82300229 MsG0380016349.01.T01:CDS 45.0%
GTTGTCAGTTCAGCTTCAAG+TGG - Chr3:82297137-82297156 MsG0380016349.01.T01:three_prime_UTR 45.0%
TCCATCTGCATGTGAAGGTA+TGG + Chr3:82297967-82297986 None:intergenic 45.0%
TGGGATCCATAGAGAAATCG+AGG - Chr3:82298658-82298677 MsG0380016349.01.T01:CDS 45.0%
TGGTGGCAACACTACTTTGA+AGG - Chr3:82297804-82297823 MsG0380016349.01.T01:intron 45.0%
TGTTGCCACCATACATATCC+TGG + Chr3:82297795-82297814 None:intergenic 45.0%
! AGTACCTTGGAAGCATGAAG+AGG + Chr3:82297239-82297258 None:intergenic 45.0%
! CCTCCTCTTTGTTTCCAGTT+TGG - Chr3:82296944-82296963 MsG0380016349.01.T01:three_prime_UTR 45.0%
! TCAGCTTCAAGTGGTATTGG+TGG - Chr3:82297146-82297165 MsG0380016349.01.T01:three_prime_UTR 45.0%
!! GATGATAATGGTCTCTTCCC+CGG + Chr3:82299163-82299182 None:intergenic 45.0%
AATGGGATCAAACCAACCGG+CGG - Chr3:82298436-82298455 MsG0380016349.01.T01:CDS 50.0%
ACAGCTACTAGTGGGACCAA+GGG + Chr3:82300409-82300428 None:intergenic 50.0%
AGAACTGGACAACAGTGACC+GGG - Chr3:82300034-82300053 MsG0380016349.01.T01:intron 50.0%
AGGTTGAACCGGAAACCAGA+CGG + Chr3:82298463-82298482 None:intergenic 50.0%
ATCTGATGCAGCCTCAATCG+CGG - Chr3:82297350-82297369 MsG0380016349.01.T01:CDS 50.0%
ATGTCTGCAAGTGCGCAACT+TGG + Chr3:82297421-82297440 None:intergenic 50.0%
CACAAGGCATGGGAACAACA+TGG - Chr3:82297874-82297893 MsG0380016349.01.T01:intron 50.0%
CTCGGGACTCCAGATCAATT+AGG + Chr3:82300340-82300359 None:intergenic 50.0%
GACATATTGTCCCACCAGCA+AGG + Chr3:82300125-82300144 None:intergenic 50.0%
GAGAACTGGACAACAGTGAC+CGG - Chr3:82300033-82300052 MsG0380016349.01.T01:intron 50.0%
GATCGTCGATGCTCGAAGAT+TGG - Chr3:82297047-82297066 MsG0380016349.01.T01:three_prime_UTR 50.0%
GCAGGAAAACCACCCTTTCT+TGG + Chr3:82300222-82300241 None:intergenic 50.0%
GCGGTGCCTTTATGCTTCTT+AGG - Chr3:82297168-82297187 MsG0380016349.01.T01:three_prime_UTR 50.0%
GGACATGGCCCTTACTTCTA+AGG + Chr3:82300095-82300114 None:intergenic 50.0%
GGCCGTAAGTGATCCAAGAA+AGG - Chr3:82300206-82300225 MsG0380016349.01.T01:CDS 50.0%
GGCTGGAGGGATATTGACAT+TGG - Chr3:82298179-82298198 MsG0380016349.01.T01:intron 50.0%
GTTGTTCCCATGCCTTGTGA+AGG + Chr3:82297873-82297892 None:intergenic 50.0%
GTTTGAACTGCCGGATCAAC+AGG + Chr3:82298483-82298502 None:intergenic 50.0%
TACAGCTACTAGTGGGACCA+AGG + Chr3:82300410-82300429 None:intergenic 50.0%
TCCGGTTCAACCTGTTGATC+CGG - Chr3:82298470-82298489 MsG0380016349.01.T01:CDS 50.0%
TCGATGCTCGAAGATTGGGA+TGG - Chr3:82297052-82297071 MsG0380016349.01.T01:three_prime_UTR 50.0%
TGCTCCTAGGGTCTATCATC+AGG - Chr3:82299419-82299438 MsG0380016349.01.T01:CDS 50.0%
TGCTCCTCTTCATGCTTCCA+AGG - Chr3:82297232-82297251 MsG0380016349.01.T01:CDS 50.0%
TGTGGCTGCTGCTCTTTGTT+TGG - Chr3:82297112-82297131 MsG0380016349.01.T01:three_prime_UTR 50.0%
TTAAATAGTGGCGGTGGACG+AGG - Chr3:82297311-82297330 MsG0380016349.01.T01:CDS 50.0%
! AACAAAGAGGAGGCATGCGA+TGG + Chr3:82296937-82296956 None:intergenic 50.0%
! AGAAAGGGTGGTTTTCCTGC+AGG - Chr3:82300222-82300241 MsG0380016349.01.T01:CDS 50.0%
! ATCATTTGAGGCCCACCTGA+AGG + Chr3:82298288-82298307 None:intergenic 50.0%
! GGTCCACAAGCTTTGTATGG+TGG - Chr3:82298120-82298139 MsG0380016349.01.T01:CDS 50.0%
! GTGGCTGCTGCTCTTTGTTT+GGG - Chr3:82297113-82297132 MsG0380016349.01.T01:three_prime_UTR 50.0%
!! AGAACTAGCTGGCCTTCACA+AGG - Chr3:82297858-82297877 MsG0380016349.01.T01:intron 50.0%
!! CTTCGAGCATCGACGATCAT+CGG + Chr3:82297045-82297064 None:intergenic 50.0%
!! GCTTCAAGTGGTATTGGTGG+CGG - Chr3:82297149-82297168 MsG0380016349.01.T01:three_prime_UTR 50.0%
ACATGCAGTGGATGCAGCTG+TGG - Chr3:82297094-82297113 MsG0380016349.01.T01:three_prime_UTR 55.0%
ACGAAATTGGCAGGAGCAGG+CGG + Chr3:82299136-82299155 None:intergenic 55.0%
ACGACGAAATTGGCAGGAGC+AGG + Chr3:82299139-82299158 None:intergenic 55.0%
AGGGAACCAGAAAGGCCTGA+AGG + Chr3:82298638-82298657 None:intergenic 55.0%
AGGTGGGCCTCAAATGATGC+TGG - Chr3:82298290-82298309 MsG0380016349.01.T01:CDS 55.0%
CATGTCCTTCAGAGCCTTGC+TGG - Chr3:82300108-82300127 MsG0380016349.01.T01:intron 55.0%
CTTGGTATGCCTCCTCCTTC+AGG - Chr3:82298270-82298289 MsG0380016349.01.T01:CDS 55.0%
GAACTGGACAACAGTGACCG+GGG - Chr3:82300035-82300054 MsG0380016349.01.T01:intron 55.0%
GAAGGCAAATGGTGGCCTCT+CGG - Chr3:82297822-82297841 MsG0380016349.01.T01:intron 55.0%
GAGCTTCCTTCAGGCCTTTC+TGG - Chr3:82298629-82298648 MsG0380016349.01.T01:CDS 55.0%
GCAGTAGTAGGTGCAAGTGG+AGG - Chr3:82299318-82299337 MsG0380016349.01.T01:CDS 55.0%
GCAGTTCCAGGAGAACTAGC+TGG - Chr3:82297847-82297866 MsG0380016349.01.T01:intron 55.0%
GGATCCCAAGGGAACCAGAA+AGG + Chr3:82298646-82298665 None:intergenic 55.0%
GGCAGAAGCAGATGCCAAAC+TGG + Chr3:82296961-82296980 None:intergenic 55.0%
GTATGCCTCCTCCTTCAGGT+GGG - Chr3:82298274-82298293 MsG0380016349.01.T01:CDS 55.0%
GTGGGACAGCTCTCATGACA+TGG - Chr3:82299657-82299676 MsG0380016349.01.T01:intron 55.0%
TCCTGCCAATTTCGTCGTGC+CGG - Chr3:82299141-82299160 MsG0380016349.01.T01:CDS 55.0%
TCCTTCAGAGCCTTGCTGGT+GGG - Chr3:82300112-82300131 MsG0380016349.01.T01:intron 55.0%
! ATTTGAGGCCCACCTGAAGG+AGG + Chr3:82298285-82298304 None:intergenic 55.0%
! CTGAAGGAGGAGGCATACCA+AGG + Chr3:82298272-82298291 None:intergenic 55.0%
! GCCGGATCAACAGGTTGAAC+CGG + Chr3:82298474-82298493 None:intergenic 55.0%
! TGAAGGCCAGCTAGTTCTCC+TGG + Chr3:82297856-82297875 None:intergenic 55.0%
!! AGCTGGCCTTCACAAGGCAT+GGG - Chr3:82297864-82297883 MsG0380016349.01.T01:intron 55.0%
!! CAGCAAGGCTCTGAAGGACA+TGG + Chr3:82300110-82300129 None:intergenic 55.0%
!! CAGGCCTTTCTGGTTCCCTT+GGG - Chr3:82298639-82298658 MsG0380016349.01.T01:CDS 55.0%
!! TAGCTGGCCTTCACAAGGCA+TGG - Chr3:82297863-82297882 MsG0380016349.01.T01:intron 55.0%
!! TCAGGCCTTTCTGGTTCCCT+TGG - Chr3:82298638-82298657 MsG0380016349.01.T01:CDS 55.0%
CCAAGAAGGGGGACATGCAG+TGG - Chr3:82297082-82297101 MsG0380016349.01.T01:three_prime_UTR 60.0%
CCACTGCATGTCCCCCTTCT+TGG + Chr3:82297085-82297104 None:intergenic 60.0%
CCTGCCAATTTCGTCGTGCC+GGG - Chr3:82299142-82299161 MsG0380016349.01.T01:CDS 60.0%
CTCCTGGAACTGCTACCGAG+AGG + Chr3:82297840-82297859 None:intergenic 60.0%
CTGCCAATTTCGTCGTGCCG+GGG - Chr3:82299143-82299162 MsG0380016349.01.T01:CDS 60.0%
CTTCCCCGGCACGACGAAAT+TGG + Chr3:82299149-82299168 None:intergenic 60.0%
GGTATGCCTCCTCCTTCAGG+TGG - Chr3:82298273-82298292 MsG0380016349.01.T01:CDS 60.0%
GTCCTTCAGAGCCTTGCTGG+TGG - Chr3:82300111-82300130 MsG0380016349.01.T01:intron 60.0%
! TCCCACCAGCAAGGCTCTGA+AGG + Chr3:82300116-82300135 None:intergenic 60.0%
!! TAGATGGGGGCATTGTCCCG+TGG - Chr3:82298382-82298401 MsG0380016349.01.T01:CDS 60.0%
AAACCAACCGGCGGACCGTC+TGG - Chr3:82298445-82298464 MsG0380016349.01.T01:CDS 65.0%
AAACCAGACGGTCCGCCGGT+TGG + Chr3:82298451-82298470 None:intergenic 65.0%
CCCGGCACGACGAAATTGGC+AGG + Chr3:82299145-82299164 None:intergenic 65.0%
GGCCTCTCGGTAGCAGTTCC+AGG - Chr3:82297835-82297854 MsG0380016349.01.T01:intron 65.0%
GGTCAGCGCAACCGCGATTG+AGG + Chr3:82297364-82297383 None:intergenic 65.0%
TGAGGCCCACCTGAAGGAGG+AGG + Chr3:82298282-82298301 None:intergenic 65.0%
CCGGAAACCAGACGGTCCGC+CGG + Chr3:82298455-82298474 None:intergenic 70.0%
! CCGGCGGACCGTCTGGTTTC+CGG - Chr3:82298452-82298471 MsG0380016349.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr3 gene 82296906 82300540 82296906 ID=MsG0380016349.01;Name=MsG0380016349.01
Chr3 mRNA 82296906 82300540 82296906 ID=MsG0380016349.01.T01;Parent=MsG0380016349.01;Name=MsG0380016349.01.T01;_AED=0.34;_eAED=0.34;_QI=0|1|0.83|1|1|1|6|289|582
Chr3 exon 82296906 82297437 82296906 ID=MsG0380016349.01.T01:exon:11776;Parent=MsG0380016349.01.T01
Chr3 exon 82298006 82298143 82298006 ID=MsG0380016349.01.T01:exon:11775;Parent=MsG0380016349.01.T01
Chr3 exon 82298239 82298506 82298239 ID=MsG0380016349.01.T01:exon:11774;Parent=MsG0380016349.01.T01
Chr3 exon 82298606 82298841 82298606 ID=MsG0380016349.01.T01:exon:11773;Parent=MsG0380016349.01.T01
Chr3 exon 82299135 82299650 82299135 ID=MsG0380016349.01.T01:exon:11772;Parent=MsG0380016349.01.T01
Chr3 exon 82300193 82300540 82300193 ID=MsG0380016349.01.T01:exon:11771;Parent=MsG0380016349.01.T01
Chr3 CDS 82300193 82300540 82300193 ID=MsG0380016349.01.T01:cds;Parent=MsG0380016349.01.T01
Chr3 CDS 82299135 82299650 82299135 ID=MsG0380016349.01.T01:cds;Parent=MsG0380016349.01.T01
Chr3 CDS 82298606 82298841 82298606 ID=MsG0380016349.01.T01:cds;Parent=MsG0380016349.01.T01
Chr3 CDS 82298239 82298506 82298239 ID=MsG0380016349.01.T01:cds;Parent=MsG0380016349.01.T01
Chr3 CDS 82298006 82298143 82298006 ID=MsG0380016349.01.T01:cds;Parent=MsG0380016349.01.T01
Chr3 CDS 82297195 82297437 82297195 ID=MsG0380016349.01.T01:cds;Parent=MsG0380016349.01.T01
Chr3 three_prime_UTR 82296906 82297194 82296906 ID=MsG0380016349.01.T01:three_prime_utr;Parent=MsG0380016349.01.T01
Gene Sequence

>MsG0380016349.01.T01

ATGGCTGCAGTTATGTTATTATGGCGTGCCATCGCATGCCTCCTCTTTGTTTCCAGTTTGGCATCTGCTTCTGCCAAAAATGGACACACAAAAACAAGAAATGAAGTAATCATTGCTCATCATGGAGCTGTTGCAACCGATGATCGTCGATGCTCGAAGATTGGGATGGATGTTATCCAAGAAGGGGGACATGCAGTGGATGCAGCTGTGGCTGCTGCTCTTTGTTTGGGAGTTGTCAGTTCAGCTTCAAGTGGTATTGGTGGCGGTGCCTTTATGCTTCTTAGGTTAGCTAATGGTGTAGCAAAGGCCTTTGATATGAGAGAAACTGCTCCTCTTCATGCTTCCAAGGATATGTATGGTGGCAACACTACTTTGAAGGCAAATGGTGGCCTCTCGGTAGCAGTTCCAGGAGAACTAGCTGGCCTTCACAAGGCATGGGAACAACATGGAAAGCTTCCATGGAATAGACTTGTAATGCCATCAGTGATTCTTGCTAGTAGAGGGTTTAAAATATCACCATACCTTCACATGCAGATGGAAAAAACAGAATCAAATATATCGAATGACATTGGTCTTAGTAGTGTATTTGCACCACATGGAAAACTCTTGAAAGCAGGTGAAATATGTTATAATAAGAAACTAGGAGAAACTCTAAGAGCAATTGCAAAGTTTGGTCCACAAGCTTTGTATGGTGGAATAGTTGGCATTAATTTAGTTAAAGATGTTCAGAAGGCTGGAGGGATATTGACATTGGAAGACCTCAAAAAGTACACTGTTAAACAAAAGGAACCTATATCTATAGATTTTCTTGGATTAAAGATCCTTGGTATGCCTCCTCCTTCAGGTGGGCCTCAAATGATGCTGCTGCTGAACATTCTAGCACAATATGAGCTTCCTTCAGGCCTTTCTGGTTCCCTTGGGATCCATAGAGAAATCGAGGCTTTGAAACATGTATTTTCAGTTAGAATGAATCTTGGGGATCCTGATTTTGTAAATATAACTGAAGTTCTTTCTGACATGCTTTCTACCAAGTTTGCTCAAGTGTTGAAAAAAGACATCAATGATAATAAGACTTATGATTCAAGTCATTATGGTGGCAAGTGGAATCAGATAAATGATCATGGTACAAGTCATTTAAGCATAATAGATTTTGAGAGAAATGCTGTTTCCATGACCACTACAGTAAATTCGTATTTCGGTGCAACAATACTTTCACCAAGTACAGGAATAGTACTCAACAATGAGATGGATGATTTTTCCATGCCTGTAAAAAATGTTTCGAAGGATGTTCGACCGCCTGCTCCTGCCAATTTCGTCGTGCCGGGGAAGAGACCATTATCATCCATGTCACCAACTATTGTTCTCAAGGACAGGGAAGTGAAAGCAGTAGTAGGTGCAAGTGGAGGAATTATGATTATTGCTGCAACTTCAGAGGTTCTTTTGAATCACTTTGTCAAAGGAATGGATCCTTTTTCTTCTGTAACTGCTCCTAGGGTCTATCATCAGCTGATACCTAATGTGGTATATTATGAGAACTGGACAACAGTGACCGGGGACCACTTTGAACTTTCTGCTAATATCAGGGAAAGCCTTAGAAGTAAGGGCCATGTCCTTCAGAGCCTTGCTGGTGGGACAATATGTCAATTTATCGTTTCAGACACTTCTGAACATTCCAAAATAAATAAAGGTGTAGGAAAGCTTGTGGCCGTAAGTGATCCAAGAAAGGGTGGTTTTCCTGCAGGCATTTGA
Protein sequence

>MsG0380016349.01.T01

MAAVMLLWRAIACLLFVSSLASASAKNGHTKTRNEVIIAHHGAVATDDRRCSKIGMDVIQEGGHAVDAAVAAALCLGVVSSASSGIGGGAFMLLRLANGVAKAFDMRETAPLHASKDMYGGNTTLKANGGLSVAVPGELAGLHKAWEQHGKLPWNRLVMPSVILASRGFKISPYLHMQMEKTESNISNDIGLSSVFAPHGKLLKAGEICYNKKLGETLRAIAKFGPQALYGGIVGINLVKDVQKAGGILTLEDLKKYTVKQKEPISIDFLGLKILGMPPPSGGPQMMLLLNILAQYELPSGLSGSLGIHREIEALKHVFSVRMNLGDPDFVNITEVLSDMLSTKFAQVLKKDINDNKTYDSSHYGGKWNQINDHGTSHLSIIDFERNAVSMTTTVNSYFGATILSPSTGIVLNNEMDDFSMPVKNVSKDVRPPAPANFVVPGKRPLSSMSPTIVLKDREVKAVVGASGGIMIIAATSEVLLNHFVKGMDPFSSVTAPRVYHQLIPNVVYYENWTTVTGDHFELSANIRESLRSKGHVLQSLAGGTICQFIVSDTSEHSKINKGVGKLVAVSDPRKGGFPAGI*