AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380017775.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017775.01.T01 MTR_3g111870 97.638 254 6 0 87 340 1 254 0.0 521
MsG0380017775.01.T01 MTR_1g022260 81.702 235 43 0 106 340 103 337 1.41e-130 386
MsG0380017775.01.T01 MTR_5g082530 75.229 218 53 1 123 340 16 232 2.28e-112 336
MsG0380017775.01.T01 MTR_4g123980 37.441 211 127 4 131 340 135 341 9.44e-34 131
MsG0380017775.01.T01 MTR_4g123980 39.181 171 99 4 131 300 135 301 4.80e-27 112
MsG0380017775.01.T01 MTR_4g129920 33.023 215 134 5 129 340 86 293 2.57e-26 109
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017775.01.T01 AT1G75210 82.969 229 38 1 112 340 28 255 1.69e-137 401
MsG0380017775.01.T01 AT1G75210 82.969 229 38 1 112 340 28 255 1.69e-137 401
MsG0380017775.01.T01 AT1G75210 74.532 267 61 3 78 340 95 358 1.25e-136 402
MsG0380017775.01.T01 AT5G48960 35.268 224 138 5 118 340 154 371 2.83e-32 127
MsG0380017775.01.T01 AT2G23890 31.925 213 135 5 131 340 99 304 2.50e-24 103
MsG0380017775.01.T01 AT2G23890 31.925 213 135 5 131 340 9 214 2.73e-24 103
MsG0380017775.01.T01 AT2G23890 29.412 238 133 7 131 340 99 329 5.01e-20 91.7

Find 63 sgRNAs with CRISPR-Local

Find 232 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAGGGATTCAAAAGTTTC+AGG 0.270692 3:-100537022 None:intergenic
AGCCTACTTGTTTGCTCAAC+TGG 0.290849 3:+100537665 MsG0380017775.01.T01:CDS
GAAAATGTGAATAGCCTCTT+AGG 0.322939 3:-100535205 None:intergenic
CTTGAAATGCTCAGAGAATC+TGG 0.350796 3:+100538683 MsG0380017775.01.T01:CDS
TTTCAAGCATAGGCACTATC+AGG 0.363480 3:-100538667 None:intergenic
TGATTATATTCATACCTTCC+TGG 0.364027 3:-100538447 None:intergenic
CTCTTATGCAGTTACTAAGT+TGG 0.380663 3:+100537299 MsG0380017775.01.T01:intron
GAAGATAAAGTTGGGACCTA+TGG 0.391455 3:+100537570 MsG0380017775.01.T01:CDS
TTGAAGATTGAGAATGCAAT+TGG 0.405571 3:-100536787 None:intergenic
TTAACTGGAAGTACATGGTC+AGG 0.408967 3:+100537326 MsG0380017775.01.T01:CDS
ATTGCATTCTCAATCTTCAA+TGG 0.424909 3:+100536790 MsG0380017775.01.T01:CDS
CAACTCTCTAAATCCGTGAT+AGG 0.441165 3:-100537541 None:intergenic
TTTGAATCCCTTGCTTATCA+AGG 0.446765 3:+100537031 MsG0380017775.01.T01:CDS
GAAGTACATGGTCAGGGGCT+TGG 0.456945 3:+100537333 MsG0380017775.01.T01:CDS
GACTTGCCCGACGGTGATAG+TGG 0.458826 3:+100536854 MsG0380017775.01.T01:CDS
AAATATCTGTTTGCCTCTAT+CGG 0.461243 3:-100536924 None:intergenic
GTGGAAAACGGCCATGTGTA+TGG 0.469317 3:+100536873 MsG0380017775.01.T01:CDS
CTTAGAGCACAAGAATCATC+AGG 0.473434 3:-100535511 None:intergenic
CATGGATCTAAAACCGATAG+AGG 0.475390 3:+100536911 MsG0380017775.01.T01:CDS
TGTCAAAAGAAGATAAAGTT+GGG 0.490411 3:+100537562 MsG0380017775.01.T01:CDS
ACGAACTGGTGATGCGATGT+TGG 0.493424 3:-100535475 None:intergenic
TTGATTTGTGCCACCGTGAT+GGG 0.498763 3:+100538397 MsG0380017775.01.T01:CDS
TGTTCTTCATATTCAGTGAC+CGG 0.503871 3:-100536952 None:intergenic
CAAATGGTTGCTAAAGATCC+AGG 0.508528 3:+100538429 MsG0380017775.01.T01:CDS
CTGATAAGGCAAACCTCGCT+AGG 0.514474 3:-100537088 None:intergenic
TTGTCAAAAGAAGATAAAGT+TGG 0.516809 3:+100537561 MsG0380017775.01.T01:CDS
GTTGATTTGTGCCACCGTGA+TGG 0.524913 3:+100538396 MsG0380017775.01.T01:CDS
GTATCAATTAGAGCATAGTC+TGG 0.526169 3:-100537624 None:intergenic
GTTTAGCAACGAAAACGAAC+TGG 0.528679 3:-100535489 None:intergenic
AAAACGAGGAAATATCTTGA+AGG 0.533402 3:+100537366 MsG0380017775.01.T01:CDS
GCACGATGCGAATTCCTAAG+AGG 0.537707 3:+100535191 None:intergenic
ATCCGAGAAGAATTTAAAAG+AGG 0.557964 3:-100535409 None:intergenic
AATTGTGCCTTGATAAGCAA+GGG 0.558308 3:-100537038 None:intergenic
TGGTCGTCTTCTCCTGAACA+TGG 0.560021 3:+100536893 MsG0380017775.01.T01:CDS
TAACTGGAAGTACATGGTCA+GGG 0.561461 3:+100537327 MsG0380017775.01.T01:CDS
TAGCGGAAATTCAAATGCAA+AGG 0.562740 3:-100535434 None:intergenic
TCTCTGAGCATTTCAAGCAT+AGG 0.573880 3:-100538677 None:intergenic
TGTTGCTGTGGGATTTGACA+TGG 0.575271 3:+100536976 MsG0380017775.01.T01:CDS
TAAAAGAGGTGATACGAGTG+AGG 0.576177 3:-100535395 None:intergenic
CCGACGGTGATAGTGGAAAA+CGG 0.578107 3:+100536861 MsG0380017775.01.T01:CDS
ATTTGACATGGACTATACTC+TGG 0.580030 3:+100536988 MsG0380017775.01.T01:CDS
TGATGGGACGCTGAAGCAAA+TGG 0.587309 3:+100538413 MsG0380017775.01.T01:CDS
AACTGGAAGTACATGGTCAG+GGG 0.598866 3:+100537328 MsG0380017775.01.T01:CDS
TGGTGATGCGATGTTGGCGA+AGG 0.601010 3:-100535469 None:intergenic
ATGAAGAACATTGTTGCTGT+GGG 0.601622 3:+100536965 MsG0380017775.01.T01:CDS
AGGCTACTTTCACATACTTG+TGG 0.603729 3:-100537521 None:intergenic
TATGAAGAACATTGTTGCTG+TGG 0.616022 3:+100536964 MsG0380017775.01.T01:CDS
AATCCTGAAAAGATTCGAGA+AGG 0.617708 3:+100537705 MsG0380017775.01.T01:CDS
TAATTGTGCCTTGATAAGCA+AGG 0.618555 3:-100537039 None:intergenic
GCGTACTAAAGTATTTCCAT+AGG 0.618622 3:-100537586 None:intergenic
GAAGGGACGAGAAGATTTAG+CGG 0.620821 3:-100535451 None:intergenic
TTTGCTTCAGCGTCCCATCA+CGG 0.627991 3:-100538410 None:intergenic
TATGTGAAAGTAGCCTATCA+CGG 0.638434 3:+100537528 MsG0380017775.01.T01:CDS
CGATTTAGGATATCCTAGCG+AGG 0.642081 3:+100537075 MsG0380017775.01.T01:CDS
GGAGAAGACGACCATACACA+TGG 0.661957 3:-100536884 None:intergenic
TATACATGACTCAAGATCAG+TGG 0.663844 3:+100536832 MsG0380017775.01.T01:CDS
TCAATGGATGAGAATCATGA+TGG 0.666948 3:+100536806 MsG0380017775.01.T01:CDS
AGATCAGTGGACTTGCCCGA+CGG 0.675755 3:+100536845 MsG0380017775.01.T01:CDS
AACCAGTTGAGCAAACAAGT+AGG 0.686251 3:-100537667 None:intergenic
TGGTTGCTAAAGATCCAGGA+AGG 0.690107 3:+100538433 MsG0380017775.01.T01:CDS
GGTGATGCGATGTTGGCGAA+GGG 0.694520 3:-100535468 None:intergenic
GCTTCAGCGTCCCATCACGG+TGG 0.722141 3:-100538407 None:intergenic
ATGGATGAGAATCATGATGG+TGG 0.738478 3:+100536809 MsG0380017775.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTTAAACAAAAATCTG+AGG - Chr3:100538620-100538639 None:intergenic 15.0%
!! AAAGAAAAAATTATGACATT+GGG - Chr3:100538533-100538552 None:intergenic 15.0%
!!! ATAGCTCTATAATAAATATT+AGG + Chr3:100538084-100538103 MsG0380017775.01.T01:intron 15.0%
!!! ATTTTTACTTAAAATAGTCA+TGG + Chr3:100536658-100536677 MsG0380017775.01.T01:intron 15.0%
!!! TAAGAGTAATTAAGTTTTTT+TGG + Chr3:100536320-100536339 MsG0380017775.01.T01:intron 15.0%
!!! TTGTTTAAATTTTATCTATC+AGG + Chr3:100538627-100538646 MsG0380017775.01.T01:intron 15.0%
!!! TTTCTTTTTTTTCTTTTGAA+GGG + Chr3:100537828-100537847 MsG0380017775.01.T01:intron 15.0%
!! AAACAAACCAAATAAAGAAA+TGG - Chr3:100535546-100535565 None:intergenic 20.0%
!! AATTAGAATTAAAAAGAGAG+AGG - Chr3:100536233-100536252 None:intergenic 20.0%
!! CAAAGAAAAAATTATGACAT+TGG - Chr3:100538534-100538553 None:intergenic 20.0%
!! GTTATACAAGAGTAATAATT+AGG - Chr3:100536734-100536753 None:intergenic 20.0%
!! TATATTAGAATATTACCTTC+CGG + Chr3:100537898-100537917 MsG0380017775.01.T01:intron 20.0%
!! TATTAATATTCAGACCAAAA+AGG - Chr3:100536493-100536512 None:intergenic 20.0%
!! TTGTTAGTTGTAAATGAAAA+AGG + Chr3:100538141-100538160 MsG0380017775.01.T01:intron 20.0%
!! TTTCATTTACAACTAACAAT+GGG - Chr3:100538140-100538159 None:intergenic 20.0%
!!! ATTTTTAGCCAAAATATAAC+AGG - Chr3:100537274-100537293 None:intergenic 20.0%
!!! CTTTCTTTTTTTTCTTTTGA+AGG + Chr3:100537827-100537846 MsG0380017775.01.T01:intron 20.0%
!!! GCATATAAATTTTAGGAAAA+AGG - Chr3:100536280-100536299 None:intergenic 20.0%
!!! TTTGTTTTCTAGAATTACTT+GGG + Chr3:100536020-100536039 MsG0380017775.01.T01:intron 20.0%
!!! TTTTCATTTACAACTAACAA+TGG - Chr3:100538141-100538160 None:intergenic 20.0%
!!! TTTTGAACCATTTCTTTATT+TGG + Chr3:100535536-100535555 MsG0380017775.01.T01:intron 20.0%
!!! TTTTGTTTTCTAGAATTACT+TGG + Chr3:100536019-100536038 MsG0380017775.01.T01:intron 20.0%
! AACTATAAACAGTCAAACTT+AGG - Chr3:100535610-100535629 None:intergenic 25.0%
! AATAATTATCATGCAAGCAA+CGG + Chr3:100538497-100538516 MsG0380017775.01.T01:intron 25.0%
! AGATTACTATATGTTGTGAA+TGG + Chr3:100536520-100536539 MsG0380017775.01.T01:intron 25.0%
! ATATTAGAATATTACCTTCC+GGG + Chr3:100537899-100537918 MsG0380017775.01.T01:intron 25.0%
! GAAATGGAAAGAAAACAATT+AGG - Chr3:100537401-100537420 None:intergenic 25.0%
! GTAACAGATTAGTGATTAAT+AGG - Chr3:100535324-100535343 None:intergenic 25.0%
! TATTACAACTAAATGATTCC+AGG + Chr3:100537779-100537798 MsG0380017775.01.T01:intron 25.0%
! TCATAATTACTGCAAGAAAA+AGG - Chr3:100537140-100537159 None:intergenic 25.0%
! TGTCAAAAGAAGATAAAGTT+GGG + Chr3:100537562-100537581 MsG0380017775.01.T01:CDS 25.0%
! TTCCTAAAATTTATATGCTG+TGG + Chr3:100536282-100536301 MsG0380017775.01.T01:intron 25.0%
! TTCTTGCAGTAATTATGATA+GGG + Chr3:100537142-100537161 MsG0380017775.01.T01:intron 25.0%
! TTGTCAAAAGAAGATAAAGT+TGG + Chr3:100537561-100537580 MsG0380017775.01.T01:CDS 25.0%
! TTTCATAGAAATGATCAAAC+AGG + Chr3:100538182-100538201 MsG0380017775.01.T01:intron 25.0%
! TTTCTTGCAGTAATTATGAT+AGG + Chr3:100537141-100537160 MsG0380017775.01.T01:intron 25.0%
!! ATCCACAGCATATAAATTTT+AGG - Chr3:100536287-100536306 None:intergenic 25.0%
!! TATAAGGCATCATTTGTATA+CGG - Chr3:100535746-100535765 None:intergenic 25.0%
!! TCTTACATCCTGTTATATTT+TGG + Chr3:100537263-100537282 MsG0380017775.01.T01:intron 25.0%
!!! AAGTTCCACTAATTTTGAAA+TGG - Chr3:100536633-100536652 None:intergenic 25.0%
!!! CAACATTTTTAGTGACAAAT+AGG + Chr3:100538711-100538730 MsG0380017775.01.T01:CDS 25.0%
!!! TGGGAAATTTTTGAAATACT+AGG + Chr3:100536098-100536117 MsG0380017775.01.T01:intron 25.0%
!!! TTGTTTTCTAGAATTACTTG+GGG + Chr3:100536021-100536040 MsG0380017775.01.T01:intron 25.0%
AAAACGAGGAAATATCTTGA+AGG + Chr3:100537366-100537385 MsG0380017775.01.T01:CDS 30.0%
AAATATCTGTTTGCCTCTAT+CGG - Chr3:100536927-100536946 None:intergenic 30.0%
ACATAGGATAAATGATGCAA+CGG - Chr3:100538266-100538285 None:intergenic 30.0%
ACTGGGAAAACATAATAGAT+TGG + Chr3:100537428-100537447 MsG0380017775.01.T01:intron 30.0%
AGAACATAAAAGCTCCTATA+AGG - Chr3:100535762-100535781 None:intergenic 30.0%
AGTTGTAAATGAAAAAGGAC+TGG + Chr3:100538146-100538165 MsG0380017775.01.T01:intron 30.0%
ATAATTATCATGCAAGCAAC+GGG + Chr3:100538498-100538517 MsG0380017775.01.T01:intron 30.0%
ATACCGTTATATCAACATGT+AGG + Chr3:100535816-100535835 MsG0380017775.01.T01:intron 30.0%
ATCCGAGAAGAATTTAAAAG+AGG - Chr3:100535412-100535431 None:intergenic 30.0%
ATTGCATTCTCAATCTTCAA+TGG + Chr3:100536790-100536809 MsG0380017775.01.T01:CDS 30.0%
ATTTGTATACGGCTTAAACA+AGG - Chr3:100535735-100535754 None:intergenic 30.0%
CTCCTGATAGATTTAATCAA+CGG - Chr3:100536763-100536782 None:intergenic 30.0%
GAAAACAGTTCGAAGAAAAA+AGG + Chr3:100535635-100535654 MsG0380017775.01.T01:intron 30.0%
GGAAAACATAATAGATTGGA+TGG + Chr3:100537432-100537451 MsG0380017775.01.T01:intron 30.0%
GTACCTACATGTTGATATAA+CGG - Chr3:100535822-100535841 None:intergenic 30.0%
GTATACAAATGATGCCTTAT+AGG + Chr3:100535745-100535764 MsG0380017775.01.T01:intron 30.0%
TAGAACACTGTCATAAATGT+TGG + Chr3:100537951-100537970 MsG0380017775.01.T01:intron 30.0%
TGAGTCCAAAATCTTGATAA+AGG - Chr3:100536579-100536598 None:intergenic 30.0%
TGATTATATTCATACCTTCC+TGG - Chr3:100538450-100538469 None:intergenic 30.0%
TGCAAGAAAAAGGAAAAACA+TGG - Chr3:100537130-100537149 None:intergenic 30.0%
TTATAATTCTTTCACAACCG+AGG + Chr3:100536165-100536184 MsG0380017775.01.T01:intron 30.0%
TTGAAATACTAGGAACTTAG+AGG + Chr3:100536108-100536127 MsG0380017775.01.T01:intron 30.0%
TTGAAGATTGAGAATGCAAT+TGG - Chr3:100536790-100536809 None:intergenic 30.0%
TTTAGGTGTAAGCGTTTATA+GGG - Chr3:100535878-100535897 None:intergenic 30.0%
! AAAAAGCTGGTTTACGATTT+AGG + Chr3:100537061-100537080 MsG0380017775.01.T01:CDS 30.0%
! CACCTCTTTTAAATTCTTCT+CGG + Chr3:100535407-100535426 MsG0380017775.01.T01:CDS 30.0%
! GCAAACAGATATTTTGTAAC+CGG + Chr3:100536933-100536952 MsG0380017775.01.T01:CDS 30.0%
! GCATTCCTTTATCAAGATTT+TGG + Chr3:100536571-100536590 MsG0380017775.01.T01:intron 30.0%
!!! TACTAAGTTGGTCTTTTAAC+TGG + Chr3:100537311-100537330 MsG0380017775.01.T01:CDS 30.0%
!!! TAGGTACTGCTTTTTTTTGT+CGG + Chr3:100535835-100535854 MsG0380017775.01.T01:intron 30.0%
!!! TGATACACTTTTTTCTCTTG+CGG + Chr3:100537641-100537660 MsG0380017775.01.T01:CDS 30.0%
!!! TTTTTTTTCTTTTGAAGGGC+TGG + Chr3:100537832-100537851 MsG0380017775.01.T01:intron 30.0%
AAAGTTCACTGCAAAGAAAG+GGG + Chr3:100536197-100536216 MsG0380017775.01.T01:intron 35.0%
AACTAAATGATTCCAGGACT+AGG + Chr3:100537785-100537804 MsG0380017775.01.T01:intron 35.0%
AATCCTGAAAAGATTCGAGA+AGG + Chr3:100537705-100537724 MsG0380017775.01.T01:CDS 35.0%
AATTGTGCCTTGATAAGCAA+GGG - Chr3:100537041-100537060 None:intergenic 35.0%
ACTGCTACAACATGAATAGT+AGG + Chr3:100538045-100538064 MsG0380017775.01.T01:intron 35.0%
AGAAATGTGAATAGCCTCTT+AGG - Chr3:100535361-100535380 None:intergenic 35.0%
AGACCAAAAAGGCAACAATT+AGG - Chr3:100536482-100536501 None:intergenic 35.0%
AGATTTGTGATGTGAATTGG+TGG + Chr3:100536078-100536097 MsG0380017775.01.T01:intron 35.0%
ATAAACGCTTACACCTAAAG+TGG + Chr3:100535879-100535898 MsG0380017775.01.T01:intron 35.0%
ATGAAGAACATTGTTGCTGT+GGG + Chr3:100536965-100536984 MsG0380017775.01.T01:CDS 35.0%
ATGCAATTCACAATCACAAC+TGG - Chr3:100535255-100535274 None:intergenic 35.0%
CAAAGTTCACTGCAAAGAAA+GGG + Chr3:100536196-100536215 MsG0380017775.01.T01:intron 35.0%
CAAATCTCTCATCACTTTAC+TGG + Chr3:100536370-100536389 MsG0380017775.01.T01:intron 35.0%
CATAGAAATGATCAAACAGG+TGG + Chr3:100538185-100538204 MsG0380017775.01.T01:intron 35.0%
CTCTTATGCAGTTACTAAGT+TGG + Chr3:100537299-100537318 MsG0380017775.01.T01:intron 35.0%
CTTTAGGTGTAAGCGTTTAT+AGG - Chr3:100535879-100535898 None:intergenic 35.0%
GAAAATGTGAATAGCCTCTT+AGG - Chr3:100535208-100535227 None:intergenic 35.0%
GAGATCATTGTTACATGTTG+TGG + Chr3:100536685-100536704 MsG0380017775.01.T01:intron 35.0%
GATAAATGATGCAACGGTAA+AGG - Chr3:100538260-100538279 None:intergenic 35.0%
GATTTGTGATGTGAATTGGT+GGG + Chr3:100536079-100536098 MsG0380017775.01.T01:intron 35.0%
GGGTACCATTTCAAAATTAG+TGG + Chr3:100536625-100536644 MsG0380017775.01.T01:intron 35.0%
GGTATGTCTATGAACTCAAA+AGG - Chr3:100535801-100535820 None:intergenic 35.0%
GTATCAATTAGAGCATAGTC+TGG - Chr3:100537627-100537646 None:intergenic 35.0%
GTGAGATTTGTGATGTGAAT+TGG + Chr3:100536075-100536094 MsG0380017775.01.T01:intron 35.0%
GTTCACTTCTCACTTTGATA+GGG - Chr3:100538476-100538495 None:intergenic 35.0%
TAATTGTGCCTTGATAAGCA+AGG - Chr3:100537042-100537061 None:intergenic 35.0%
TAGCGGAAATTCAAATGCAA+AGG - Chr3:100535437-100535456 None:intergenic 35.0%
TAGTAGGCAGGTGAAATTAA+TGG + Chr3:100538061-100538080 MsG0380017775.01.T01:intron 35.0%
TATACATGACTCAAGATCAG+TGG + Chr3:100536832-100536851 MsG0380017775.01.T01:CDS 35.0%
TATGAAGAACATTGTTGCTG+TGG + Chr3:100536964-100536983 MsG0380017775.01.T01:CDS 35.0%
TATGTGAAAGTAGCCTATCA+CGG + Chr3:100537528-100537547 MsG0380017775.01.T01:CDS 35.0%
TCAAGGCACAATTAAAAAGC+TGG + Chr3:100537048-100537067 MsG0380017775.01.T01:CDS 35.0%
TCAATGGATGAGAATCATGA+TGG + Chr3:100536806-100536825 MsG0380017775.01.T01:CDS 35.0%
TCACAAATCTCACACTATGA+AGG - Chr3:100536068-100536087 None:intergenic 35.0%
TGCAGTAATTATGATAGGGA+TGG + Chr3:100537146-100537165 MsG0380017775.01.T01:intron 35.0%
TGCTGCTGTATGTATTTAGA+TGG + Chr3:100537494-100537513 MsG0380017775.01.T01:intron 35.0%
TGTTCACTTCTCACTTTGAT+AGG - Chr3:100538477-100538496 None:intergenic 35.0%
TGTTCTTCATATTCAGTGAC+CGG - Chr3:100536955-100536974 None:intergenic 35.0%
TGTTGTAGCAGTTTACAATC+AGG - Chr3:100538037-100538056 None:intergenic 35.0%
TTAGGTGTAAGCGTTTATAG+GGG - Chr3:100535877-100535896 None:intergenic 35.0%
TTTAACATAGTGAACCACGA+GGG - Chr3:100537210-100537229 None:intergenic 35.0%
TTTCCATTTCTTTCAGCACT+GGG + Chr3:100537411-100537430 MsG0380017775.01.T01:intron 35.0%
TTTGAATCCCTTGCTTATCA+AGG + Chr3:100537031-100537050 MsG0380017775.01.T01:CDS 35.0%
! AGTCCTAATTGTTGCCTTTT+TGG + Chr3:100536476-100536495 MsG0380017775.01.T01:intron 35.0%
! ATTTGACATGGACTATACTC+TGG + Chr3:100536988-100537007 MsG0380017775.01.T01:CDS 35.0%
! GCGTACTAAAGTATTTCCAT+AGG - Chr3:100537589-100537608 None:intergenic 35.0%
! TGCCGTTGATTAAATCTATC+AGG + Chr3:100536758-100536777 MsG0380017775.01.T01:intron 35.0%
! TGTATTATCCCGCCTATTTT+TGG + Chr3:100536602-100536621 MsG0380017775.01.T01:intron 35.0%
! TTGGTTCTTGACAAAAAACG+AGG + Chr3:100537352-100537371 MsG0380017775.01.T01:CDS 35.0%
!! AAAGTGCTGTAAGACTGATA+AGG - Chr3:100537105-100537124 None:intergenic 35.0%
!! GTATGAGTGTTTTTGTTTGC+AGG + Chr3:100536423-100536442 MsG0380017775.01.T01:intron 35.0%
!! GTATTATCCCGCCTATTTTT+GGG + Chr3:100536603-100536622 MsG0380017775.01.T01:intron 35.0%
!! GTCTTTTAACTGGAAGTACA+TGG + Chr3:100537321-100537340 MsG0380017775.01.T01:CDS 35.0%
!! TGCTCAACTGGTTGATTTTA+AGG + Chr3:100537677-100537696 MsG0380017775.01.T01:CDS 35.0%
!!! TATTATCCCGCCTATTTTTG+GGG + Chr3:100536604-100536623 MsG0380017775.01.T01:intron 35.0%
!!! TGCTTTTTTTTGTCGGTTGA+CGG + Chr3:100535842-100535861 MsG0380017775.01.T01:intron 35.0%
AAAGGAATGCATTCACTTCC+TGG - Chr3:100536561-100536580 None:intergenic 40.0%
AACCAGTTGAGCAAACAAGT+AGG - Chr3:100537670-100537689 None:intergenic 40.0%
ATAAAGAAGCCAAGTCTTCC+CGG - Chr3:100537920-100537939 None:intergenic 40.0%
ATGGATGAGAATCATGATGG+TGG + Chr3:100536809-100536828 MsG0380017775.01.T01:CDS 40.0%
CAAATGGTTGCTAAAGATCC+AGG + Chr3:100538429-100538448 MsG0380017775.01.T01:CDS 40.0%
CAACTCTCTAAATCCGTGAT+AGG - Chr3:100537544-100537563 None:intergenic 40.0%
CAAGGTGGAGTTAACTACAT+AGG - Chr3:100538282-100538301 None:intergenic 40.0%
CACAACGGTATGACATTGTT+AGG - Chr3:100535948-100535967 None:intergenic 40.0%
CCAAAGTTCACTGCAAAGAA+AGG + Chr3:100536195-100536214 MsG0380017775.01.T01:intron 40.0%
CCTTTCTTTGCAGTGAACTT+TGG - Chr3:100536198-100536217 None:intergenic 40.0%
CTACAACATGAATAGTAGGC+AGG + Chr3:100538049-100538068 MsG0380017775.01.T01:intron 40.0%
CTCGTGGTTCACTATGTTAA+AGG + Chr3:100537209-100537228 MsG0380017775.01.T01:intron 40.0%
CTTAGAGCACAAGAATCATC+AGG - Chr3:100535514-100535533 None:intergenic 40.0%
CTTGAAATGCTCAGAGAATC+TGG + Chr3:100538683-100538702 MsG0380017775.01.T01:CDS 40.0%
CTTTAACATAGTGAACCACG+AGG - Chr3:100537211-100537230 None:intergenic 40.0%
CTTTCCATTTCTTTCAGCAC+TGG + Chr3:100537410-100537429 MsG0380017775.01.T01:intron 40.0%
GAAATGGTACCCCCAAAAAT+AGG - Chr3:100536617-100536636 None:intergenic 40.0%
GAAGATAAAGTTGGGACCTA+TGG + Chr3:100537570-100537589 MsG0380017775.01.T01:CDS 40.0%
GCAAGGGATTCAAAAGTTTC+AGG - Chr3:100537025-100537044 None:intergenic 40.0%
GGAAGACTTGGCTTCTTTAT+GGG + Chr3:100537920-100537939 MsG0380017775.01.T01:intron 40.0%
GTTTAGCAACGAAAACGAAC+TGG - Chr3:100535492-100535511 None:intergenic 40.0%
TAAAAGAGGTGATACGAGTG+AGG - Chr3:100535398-100535417 None:intergenic 40.0%
TCTCTGAGCATTTCAAGCAT+AGG - Chr3:100538680-100538699 None:intergenic 40.0%
TGAACTTTGGCATCATACCT+CGG - Chr3:100536185-100536204 None:intergenic 40.0%
TGATCAGCACAGATTTAACG+AGG - Chr3:100536349-100536368 None:intergenic 40.0%
TGTAGTTAACTCCACCTTGT+AGG + Chr3:100538283-100538302 MsG0380017775.01.T01:intron 40.0%
TTTAGAAGGTCGACATACCT+TGG + Chr3:100537997-100538016 MsG0380017775.01.T01:intron 40.0%
TTTCAAGCATAGGCACTATC+AGG - Chr3:100538670-100538689 None:intergenic 40.0%
! ACTCAAAAGGACTTTTCCAC+TGG - Chr3:100535788-100535807 None:intergenic 40.0%
! AGGATTAGCATTAAGCTCCA+AGG - Chr3:100538017-100538036 None:intergenic 40.0%
! AGGCTACTTTCACATACTTG+TGG - Chr3:100537524-100537543 None:intergenic 40.0%
! CATGGATCTAAAACCGATAG+AGG + Chr3:100536911-100536930 MsG0380017775.01.T01:CDS 40.0%
! GCTTTTATGTTCTTCACCAG+TGG + Chr3:100535769-100535788 MsG0380017775.01.T01:intron 40.0%
! TAACTGGAAGTACATGGTCA+GGG + Chr3:100537327-100537346 MsG0380017775.01.T01:CDS 40.0%
! TTAACTGGAAGTACATGGTC+AGG + Chr3:100537326-100537345 MsG0380017775.01.T01:CDS 40.0%
! TTTCCCAGTGCTGAAAGAAA+TGG - Chr3:100537417-100537436 None:intergenic 40.0%
!! CTTGCTAATAGGGCTTTAGA+AGG + Chr3:100537983-100538002 MsG0380017775.01.T01:intron 40.0%
!! GGGGAGAAGTTTTTCAAAAC+TGG + Chr3:100536040-100536059 MsG0380017775.01.T01:intron 40.0%
!!! ATTATCCCGCCTATTTTTGG+GGG + Chr3:100536605-100536624 MsG0380017775.01.T01:intron 40.0%
!!! TCGGTTTTAGATCCATGTTC+AGG - Chr3:100536908-100536927 None:intergenic 40.0%
AAACAATGATCGCCTAGTCC+TGG - Chr3:100537800-100537819 None:intergenic 45.0%
AACCCTAGACCTTCCACTTT+AGG - Chr3:100535895-100535914 None:intergenic 45.0%
ACACCTAAAGTGGAAGGTCT+AGG + Chr3:100535889-100535908 MsG0380017775.01.T01:intron 45.0%
ACGCTTACACCTAAAGTGGA+AGG + Chr3:100535883-100535902 MsG0380017775.01.T01:intron 45.0%
ACGGTATGACATTGTTAGGC+TGG - Chr3:100535944-100535963 None:intergenic 45.0%
ACTGGTCAGACAGATTGAAC+TGG + Chr3:100536388-100536407 MsG0380017775.01.T01:intron 45.0%
AGCCTACTTGTTTGCTCAAC+TGG + Chr3:100537665-100537684 MsG0380017775.01.T01:CDS 45.0%
AGCCTCTTAGGAATTCGCAT+CGG - Chr3:100535196-100535215 None:intergenic 45.0%
AGCTAGCTACATGATCCGTA+AGG - Chr3:100535976-100535995 None:intergenic 45.0%
ATGGTACCCCCAAAAATAGG+CGG - Chr3:100536614-100536633 None:intergenic 45.0%
CAATGTCATACCGTTGTGCT+AGG + Chr3:100535950-100535969 MsG0380017775.01.T01:intron 45.0%
CACCTAAAGTGGAAGGTCTA+GGG + Chr3:100535890-100535909 MsG0380017775.01.T01:intron 45.0%
CACTTCTCACTTTGATAGGG+TGG - Chr3:100538473-100538492 None:intergenic 45.0%
CCACCTTGTAGGAAATGCTT+TGG + Chr3:100538294-100538313 MsG0380017775.01.T01:intron 45.0%
CCTTGTAGGAAATGCTTTGG+TGG + Chr3:100538297-100538316 MsG0380017775.01.T01:intron 45.0%
CTTCCTGGTTTCCTCAACAT+TGG - Chr3:100536546-100536565 None:intergenic 45.0%
GAAGGGACGAGAAGATTTAG+CGG - Chr3:100535454-100535473 None:intergenic 45.0%
GGGAAGACTTGGCTTCTTTA+TGG + Chr3:100537919-100537938 MsG0380017775.01.T01:intron 45.0%
GTTAGGCTGGATATCTTCTG+CGG - Chr3:100535931-100535950 None:intergenic 45.0%
GTTGTGAATGGCCAATGTTG+AGG + Chr3:100536532-100536551 MsG0380017775.01.T01:intron 45.0%
TATTACCTTCCGGGAAGACT+TGG + Chr3:100537908-100537927 MsG0380017775.01.T01:intron 45.0%
TGGTTGCTAAAGATCCAGGA+AGG + Chr3:100538433-100538452 MsG0380017775.01.T01:CDS 45.0%
TGTTGCTGTGGGATTTGACA+TGG + Chr3:100536976-100536995 MsG0380017775.01.T01:CDS 45.0%
! AACTGGAAGTACATGGTCAG+GGG + Chr3:100537328-100537347 MsG0380017775.01.T01:CDS 45.0%
! ACGCCTTCTCGAATCTTTTC+AGG - Chr3:100537711-100537730 None:intergenic 45.0%
! CCAAAGCATTTCCTACAAGG+TGG - Chr3:100538297-100538316 None:intergenic 45.0%
! CCACCAAAGCATTTCCTACA+AGG - Chr3:100538300-100538319 None:intergenic 45.0%
! CGATTTAGGATATCCTAGCG+AGG + Chr3:100537075-100537094 MsG0380017775.01.T01:CDS 45.0%
! GCTTCAGCTGCTTGCTAATA+GGG + Chr3:100537973-100537992 MsG0380017775.01.T01:intron 45.0%
!! TAGTTTTACCAACTCCCTCG+TGG + Chr3:100537193-100537212 MsG0380017775.01.T01:intron 45.0%
!! TTGATTTGTGCCACCGTGAT+GGG + Chr3:100538397-100538416 MsG0380017775.01.T01:CDS 45.0%
!!! ATTTTTGAATTAAAAATTAA+TGG - Chr3:100538110-100538129 None:intergenic 5.0%
!!! TAATTTTTAATTCAAAAATT+TGG + Chr3:100538111-100538130 MsG0380017775.01.T01:intron 5.0%
ATAGTGAACCACGAGGGAGT+TGG - Chr3:100537204-100537223 None:intergenic 50.0%
ATCCGTAAGGCCTAGCACAA+CGG - Chr3:100535963-100535982 None:intergenic 50.0%
CTGATAAGGCAAACCTCGCT+AGG - Chr3:100537091-100537110 None:intergenic 50.0%
GATATCTTCTGCGGTGTCCT+GGG - Chr3:100535922-100535941 None:intergenic 50.0%
GGAGAAGACGACCATACACA+TGG - Chr3:100536887-100536906 None:intergenic 50.0%
GTGGAAAACGGCCATGTGTA+TGG + Chr3:100536873-100536892 MsG0380017775.01.T01:CDS 50.0%
TACCGTTGTGCTAGGCCTTA+CGG + Chr3:100535958-100535977 MsG0380017775.01.T01:intron 50.0%
TGATGGGACGCTGAAGCAAA+TGG + Chr3:100538413-100538432 MsG0380017775.01.T01:CDS 50.0%
TGCCGATGCGAATTCCTAAG+AGG + Chr3:100535344-100535363 MsG0380017775.01.T01:intron 50.0%
TGGCCAATGTTGAGGAAACC+AGG + Chr3:100536540-100536559 MsG0380017775.01.T01:intron 50.0%
TGGTACCCCCAAAAATAGGC+GGG - Chr3:100536613-100536632 None:intergenic 50.0%
TGGTCGTCTTCTCCTGAACA+TGG + Chr3:100536893-100536912 MsG0380017775.01.T01:CDS 50.0%
TTTGCTTCAGCGTCCCATCA+CGG - Chr3:100538413-100538432 None:intergenic 50.0%
! ACGAACTGGTGATGCGATGT+TGG - Chr3:100535478-100535497 None:intergenic 50.0%
! CCGTTTTCCACTATCACCGT+CGG - Chr3:100536864-100536883 None:intergenic 50.0%
! CGTTTTCCACTATCACCGTC+GGG - Chr3:100536863-100536882 None:intergenic 50.0%
! GGCTTCAGCTGCTTGCTAAT+AGG + Chr3:100537972-100537991 MsG0380017775.01.T01:intron 50.0%
!! CCGACGGTGATAGTGGAAAA+CGG + Chr3:100536861-100536880 MsG0380017775.01.T01:CDS 50.0%
!! GTTGATTTGTGCCACCGTGA+TGG + Chr3:100538396-100538415 MsG0380017775.01.T01:CDS 50.0%
AGAAGCCAAGTCTTCCCGGA+AGG - Chr3:100537916-100537935 None:intergenic 55.0%
GAAGTACATGGTCAGGGGCT+TGG + Chr3:100537333-100537352 MsG0380017775.01.T01:CDS 55.0%
GGATATCTTCTGCGGTGTCC+TGG - Chr3:100535923-100535942 None:intergenic 55.0%
GGTGATGCGATGTTGGCGAA+GGG - Chr3:100535471-100535490 None:intergenic 55.0%
! AAGGTCTAGGGTTCGAACCC+AGG + Chr3:100535902-100535921 MsG0380017775.01.T01:intron 55.0%
! AGATCAGTGGACTTGCCCGA+CGG + Chr3:100536845-100536864 MsG0380017775.01.T01:CDS 55.0%
! TGGTGATGCGATGTTGGCGA+AGG - Chr3:100535472-100535491 None:intergenic 55.0%
GACTTGCCCGACGGTGATAG+TGG + Chr3:100536854-100536873 MsG0380017775.01.T01:CDS 60.0%
GCTTCAGCGTCCCATCACGG+TGG - Chr3:100538410-100538429 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 100535196 100538736 100535196 ID=MsG0380017775.01;Name=MsG0380017775.01
Chr3 mRNA 100535196 100538736 100535196 ID=MsG0380017775.01.T01;Parent=MsG0380017775.01;Name=MsG0380017775.01.T01;_AED=0.47;_eAED=0.49;_QI=0|0.66|0.57|1|0.66|0.71|7|0|341
Chr3 exon 100535196 100535257 100535196 ID=MsG0380017775.01.T01:exon:2784;Parent=MsG0380017775.01.T01
Chr3 exon 100535366 100535532 100535366 ID=MsG0380017775.01.T01:exon:2785;Parent=MsG0380017775.01.T01
Chr3 exon 100536780 100537096 100536780 ID=MsG0380017775.01.T01:exon:2786;Parent=MsG0380017775.01.T01
Chr3 exon 100537310 100537387 100537310 ID=MsG0380017775.01.T01:exon:2787;Parent=MsG0380017775.01.T01
Chr3 exon 100537513 100537733 100537513 ID=MsG0380017775.01.T01:exon:2788;Parent=MsG0380017775.01.T01
Chr3 exon 100538362 100538454 100538362 ID=MsG0380017775.01.T01:exon:2789;Parent=MsG0380017775.01.T01
Chr3 exon 100538649 100538736 100538649 ID=MsG0380017775.01.T01:exon:2790;Parent=MsG0380017775.01.T01
Chr3 CDS 100535196 100535257 100535196 ID=MsG0380017775.01.T01:cds;Parent=MsG0380017775.01.T01
Chr3 CDS 100535366 100535532 100535366 ID=MsG0380017775.01.T01:cds;Parent=MsG0380017775.01.T01
Chr3 CDS 100536780 100537096 100536780 ID=MsG0380017775.01.T01:cds;Parent=MsG0380017775.01.T01
Chr3 CDS 100537310 100537387 100537310 ID=MsG0380017775.01.T01:cds;Parent=MsG0380017775.01.T01
Chr3 CDS 100537513 100537733 100537513 ID=MsG0380017775.01.T01:cds;Parent=MsG0380017775.01.T01
Chr3 CDS 100538362 100538454 100538362 ID=MsG0380017775.01.T01:cds;Parent=MsG0380017775.01.T01
Chr3 CDS 100538649 100538736 100538649 ID=MsG0380017775.01.T01:cds;Parent=MsG0380017775.01.T01
Gene Sequence

>MsG0380017775.01.T01

ATGCGAATTCCTAAGAGGCTATTCACATTTTCTCTCTCTAACTTCTCTTGCTTATGCCAGTTGCTATTCACATTTCTCTCTCTAACTCTCTCCTCACTCGTATCACCTCTTTTAAATTCTTCTCGGATTTCCTTTGCATTTGAATTTCCGCTAAATCTTCTCGTCCCTTCGCCAACATCGCATCACCAGTTCGTTTTCGTTGCTAAACCTGATGATTCTTGTGCTCTAAGAGCTAGCCAATTGCATTCTCAATCTTCAATGGATGAGAATCATGATGGTGGTATACATGACTCAAGATCAGTGGACTTGCCCGACGGTGATAGTGGAAAACGGCCATGTGTATGGTCGTCTTCTCCTGAACATGGATCTAAAACCGATAGAGGCAAACAGATATTTTGTAACCGGTCACTGAATATGAAGAACATTGTTGCTGTGGGATTTGACATGGACTATACTCTGGCACAATACAAGCCTGAAACTTTTGAATCCCTTGCTTATCAAGGCACAATTAAAAAGCTGGTTTACGATTTAGGATATCCTAGCGAGTTACTAAGTTGGTCTTTTAACTGGAAGTACATGGTCAGGGGCTTGGTTCTTGACAAAAAACGAGGAAATATCTTGAAGATGGATCGCCACAAGTATGTGAAAGTAGCCTATCACGGATTTAGAGAGTTGTCAAAAGAAGATAAAGTTGGGACCTATGGAAATACTTTAGTACGCGATTCATTTGACGAGCCAGACTATGCTCTAATTGATACACTTTTTTCTCTTGCGGAAGCCTACTTGTTTGCTCAACTGGTTGATTTTAAGGATAGTAATCCTGAAAAGATTCGAGAAGGCGTTGATTATTCTCGCATGTATAAAGATGTTCGAGCTGCTGTTGATTTGTGCCACCGTGATGGGACGCTGAAGCAAATGGTTGCTAAAGATCCAGGAAGGTATATCAATGAAGACAACCTGATAGTGCCTATGCTTGAAATGCTCAGAGAATCTGGACGTGCAACATTTTTAGTGACAAATAGGTAG

Protein sequence

>MsG0380017775.01.T01

MRIPKRLFTFSLSNFSCLCQLLFTFLSLTLSSLVSPLLNSSRISFAFEFPLNLLVPSPTSHHQFVFVAKPDDSCALRASQLHSQSSMDENHDGGIHDSRSVDLPDGDSGKRPCVWSSSPEHGSKTDRGKQIFCNRSLNMKNIVAVGFDMDYTLAQYKPETFESLAYQGTIKKLVYDLGYPSELLSWSFNWKYMVRGLVLDKKRGNILKMDRHKYVKVAYHGFRELSKEDKVGTYGNTLVRDSFDEPDYALIDTLFSLAEAYLFAQLVDFKDSNPEKIREGVDYSRMYKDVRAAVDLCHRDGTLKQMVAKDPGRYINEDNLIVPMLEMLRESGRATFLVTNR*