Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280011113.01.T01 | XP_003597525.1 | 97.942 | 243 | 5 | 0 | 1 | 243 | 1 | 243 | 4.67E-178 | 498 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280011113.01.T01 | Q96288 | 57.48 | 254 | 91 | 7 | 1 | 243 | 1 | 248 | 2.89E-93 | 277 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280011113.01.T01 | G7IHV4 | 97.942 | 243 | 5 | 0 | 1 | 243 | 1 | 243 | 2.23e-178 | 498 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180002232.01 | MsG0280011113.01 | 0.941984 | 1.599683e-101 | 1.943715e-96 |
| MsG0180003624.01 | MsG0280011113.01 | 0.867001 | 1.886976e-65 | 6.486416e-62 |
| MsG0280010625.01 | MsG0280011113.01 | 0.806722 | 7.163753e-50 | 3.916723e-47 |
| MsG0280011113.01 | MsG0380013116.01 | 0.885241 | 9.635926e-72 | 6.563764e-68 |
| MsG0280011113.01 | MsG0380013368.01 | 0.837437 | 5.201367e-57 | 6.756148e-54 |
| MsG0280011113.01 | MsG0380016349.01 | 0.839570 | 1.463880e-57 | 2.029691e-54 |
| MsG0280011113.01 | MsG0480018239.01 | 0.855170 | 7.550893e-62 | 1.727635e-58 |
| MsG0280011113.01 | MsG0480020233.01 | 0.805777 | 1.133389e-49 | 6.048891e-47 |
| MsG0280011113.01 | MsG0580025052.01 | 0.805797 | 1.122395e-49 | 5.993217e-47 |
| MsG0280011113.01 | MsG0680034837.01 | 0.818399 | 2.000530e-52 | 1.495974e-49 |
| MsG0280011113.01 | MsG0780036586.01 | 0.811086 | 8.345576e-51 | 5.118340e-48 |
| MsG0280011113.01 | MsG0780036754.01 | 0.831685 | 1.451097e-55 | 1.586355e-52 |
| MsG0280011113.01 | MsG0780039315.01 | 0.822421 | 2.389948e-53 | 1.999535e-50 |
| MsG0280011113.01 | MsG0780041807.01 | 0.800541 | 1.373172e-48 | 6.410527e-46 |
| MsG0280011113.01 | MsG0880043624.01 | 0.846372 | 2.264544e-59 | 3.889275e-56 |
| MsG0280011113.01 | MsG0880043763.01 | 0.833540 | 5.029789e-56 | 5.810267e-53 |
| MsG0280006748.01 | MsG0280011113.01 | -0.813019 | 3.164170e-51 | 2.042885e-48 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280011113.01.T01 | MTR_2g099010 | 97.942 | 243 | 5 | 0 | 1 | 243 | 1 | 243 | 0.0 | 498 |
| MsG0280011113.01.T01 | MTR_2g099010 | 97.531 | 243 | 5 | 1 | 1 | 243 | 1 | 242 | 2.13e-179 | 492 |
| MsG0280011113.01.T01 | MTR_2g099010 | 95.722 | 187 | 8 | 0 | 57 | 243 | 31 | 217 | 1.93e-123 | 350 |
| MsG0280011113.01.T01 | MTR_4g067320 | 69.672 | 244 | 69 | 3 | 1 | 243 | 1 | 240 | 4.61e-123 | 349 |
| MsG0280011113.01.T01 | MTR_4g067320 | 69.262 | 244 | 69 | 4 | 1 | 243 | 1 | 239 | 8.74e-121 | 343 |
| MsG0280011113.01.T01 | MTR_2g073370 | 57.407 | 108 | 46 | 0 | 1 | 108 | 1 | 108 | 1.55e-41 | 144 |
| MsG0280011113.01.T01 | MTR_1g023260 | 35.338 | 266 | 142 | 6 | 1 | 242 | 1 | 260 | 9.37e-37 | 130 |
| MsG0280011113.01.T01 | MTR_1g023260 | 41.040 | 173 | 81 | 2 | 1 | 152 | 1 | 173 | 6.61e-35 | 124 |
| MsG0280011113.01.T01 | MTR_3g113070 | 34.529 | 223 | 123 | 5 | 1 | 217 | 1 | 206 | 1.16e-34 | 124 |
| MsG0280011113.01.T01 | MTR_3g117320 | 53.211 | 109 | 50 | 1 | 1 | 108 | 1 | 109 | 8.49e-34 | 122 |
| MsG0280011113.01.T01 | MTR_4g071200 | 48.214 | 112 | 57 | 1 | 1 | 111 | 1 | 112 | 1.54e-32 | 118 |
| MsG0280011113.01.T01 | MTR_5g021580 | 47.959 | 98 | 48 | 2 | 1 | 98 | 1 | 95 | 1.36e-23 | 94.4 |
| MsG0280011113.01.T01 | MTR_5g021580 | 47.959 | 98 | 48 | 2 | 1 | 98 | 1 | 95 | 1.55e-23 | 94.0 |
| MsG0280011113.01.T01 | MTR_3g105710 | 42.708 | 96 | 46 | 1 | 5 | 100 | 6 | 92 | 2.61e-17 | 79.3 |
| MsG0280011113.01.T01 | MTR_7g018170 | 40.217 | 92 | 46 | 1 | 5 | 96 | 26 | 108 | 1.14e-16 | 78.6 |
| MsG0280011113.01.T01 | MTR_7g018170 | 50.000 | 50 | 25 | 0 | 5 | 54 | 69 | 118 | 4.68e-11 | 62.4 |
| MsG0280011113.01.T01 | MTR_1g013450 | 40.217 | 92 | 46 | 1 | 5 | 96 | 6 | 88 | 3.37e-16 | 76.6 |
| MsG0280011113.01.T01 | MTR_4g128930 | 36.957 | 92 | 49 | 1 | 5 | 96 | 22 | 104 | 4.11e-15 | 74.3 |
| MsG0280011113.01.T01 | MTR_7g108150 | 39.796 | 98 | 49 | 2 | 5 | 102 | 20 | 107 | 5.40e-13 | 68.2 |
| MsG0280011113.01.T01 | MTR_5g069480 | 33.333 | 96 | 55 | 1 | 1 | 96 | 1 | 87 | 8.65e-12 | 64.7 |
| MsG0280011113.01.T01 | MTR_5g069480 | 33.333 | 96 | 55 | 1 | 1 | 96 | 1 | 87 | 1.17e-11 | 63.5 |
| MsG0280011113.01.T01 | MTR_3g082630 | 35.417 | 96 | 52 | 2 | 1 | 96 | 1 | 86 | 7.67e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280011113.01.T01 | AT1G06040 | 57.480 | 254 | 91 | 7 | 1 | 243 | 1 | 248 | 2.95e-94 | 277 |
| MsG0280011113.01.T01 | AT2G31380 | 57.317 | 246 | 94 | 5 | 1 | 243 | 1 | 238 | 4.19e-94 | 276 |
| MsG0280011113.01.T01 | AT1G06040 | 63.529 | 170 | 51 | 4 | 1 | 161 | 1 | 168 | 2.80e-68 | 208 |
| MsG0280011113.01.T01 | AT1G78600 | 57.407 | 108 | 46 | 0 | 1 | 108 | 1 | 108 | 1.16e-40 | 141 |
| MsG0280011113.01.T01 | AT1G78600 | 57.407 | 108 | 46 | 0 | 1 | 108 | 1 | 108 | 2.14e-40 | 141 |
| MsG0280011113.01.T01 | AT4G10240 | 52.632 | 114 | 44 | 2 | 1 | 108 | 1 | 110 | 2.10e-35 | 124 |
| MsG0280011113.01.T01 | AT1G75540 | 52.174 | 115 | 52 | 1 | 1 | 112 | 1 | 115 | 3.68e-34 | 125 |
| MsG0280011113.01.T01 | AT4G39070 | 51.887 | 106 | 50 | 1 | 1 | 105 | 1 | 106 | 2.59e-30 | 113 |
| MsG0280011113.01.T01 | AT2G21320 | 48.980 | 98 | 47 | 2 | 1 | 98 | 1 | 95 | 2.56e-23 | 93.2 |
| MsG0280011113.01.T01 | AT4G38960 | 48.980 | 98 | 47 | 2 | 1 | 98 | 1 | 95 | 6.63e-23 | 92.4 |
| MsG0280011113.01.T01 | AT4G38960 | 48.980 | 98 | 47 | 2 | 1 | 98 | 1 | 95 | 6.63e-23 | 92.4 |
| MsG0280011113.01.T01 | AT5G15850 | 42.391 | 92 | 44 | 1 | 5 | 96 | 12 | 94 | 3.67e-17 | 79.7 |
| MsG0280011113.01.T01 | AT2G24790 | 40.625 | 96 | 48 | 1 | 5 | 100 | 8 | 94 | 9.68e-17 | 78.2 |
| MsG0280011113.01.T01 | AT2G24790 | 41.304 | 92 | 45 | 1 | 5 | 96 | 8 | 90 | 1.13e-16 | 76.6 |
| MsG0280011113.01.T01 | AT3G02380 | 30.220 | 182 | 108 | 5 | 5 | 182 | 16 | 182 | 1.24e-15 | 75.5 |
| MsG0280011113.01.T01 | AT5G24930 | 39.583 | 96 | 49 | 1 | 5 | 100 | 6 | 92 | 1.60e-15 | 75.5 |
| MsG0280011113.01.T01 | AT5G15840 | 32.520 | 123 | 71 | 2 | 5 | 124 | 20 | 133 | 6.14e-15 | 73.6 |
| MsG0280011113.01.T01 | AT5G15840 | 32.520 | 123 | 71 | 2 | 5 | 124 | 20 | 133 | 7.68e-15 | 72.4 |
| MsG0280011113.01.T01 | AT2G33500 | 34.000 | 100 | 57 | 1 | 3 | 102 | 10 | 100 | 3.30e-12 | 65.9 |
| MsG0280011113.01.T01 | AT2G33500 | 34.000 | 100 | 57 | 1 | 3 | 102 | 10 | 100 | 3.42e-12 | 65.9 |
| MsG0280011113.01.T01 | AT1G28050 | 33.663 | 101 | 58 | 1 | 2 | 102 | 6 | 97 | 3.42e-12 | 65.9 |
| MsG0280011113.01.T01 | AT2G47890 | 37.647 | 85 | 44 | 1 | 5 | 89 | 13 | 88 | 6.26e-11 | 62.0 |
| MsG0280011113.01.T01 | AT2G47890 | 37.647 | 85 | 44 | 1 | 5 | 89 | 13 | 88 | 7.02e-11 | 61.6 |
Find 55 sgRNAs with CRISPR-Local
Find 114 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGTGGGAATAATTTATT+TGG | 0.153400 | 2:-79722049 | MsG0280011113.01.T01:three_prime_UTR |
| ACAATTTCAAAATCTTAATT+TGG | 0.164175 | 2:+79721967 | None:intergenic |
| GTGAGTTTGTTCGTCGTCTT+TGG | 0.207161 | 2:+79722915 | None:intergenic |
| TTGGGGTGTTGATGACTTAT+TGG | 0.211633 | 2:-79722815 | MsG0280011113.01.T01:CDS |
| GCCTGACTTTACACCTCCTT+GGG | 0.273748 | 2:-79722833 | MsG0280011113.01.T01:CDS |
| ACTTGATGTGTATTCCTCTT+AGG | 0.287737 | 2:+79722883 | None:intergenic |
| TCACGTATGAGTTCAATTCT+AGG | 0.311669 | 2:+79722133 | None:intergenic |
| TTTGTTCTTAAAGTTTCATT+AGG | 0.326962 | 2:-79724283 | MsG0280011113.01.T01:five_prime_UTR |
| ATTGTATAATATAATATTCA+TGG | 0.339896 | 2:+79724380 | None:intergenic |
| AGTTTCTGTGTGATGAATAA+TGG | 0.342501 | 2:+79722182 | None:intergenic |
| CAGAAGGATTCCATGCAGTT+TGG | 0.346227 | 2:-79722310 | MsG0280011113.01.T01:CDS |
| TTTGGCGCAGTTAGATTTCA+TGG | 0.360694 | 2:+79722933 | None:intergenic |
| TGATTTGCAGAAAGGCTTCC+TGG | 0.363066 | 2:+79722988 | None:intergenic |
| TGCCTGACTTTACACCTCCT+TGG | 0.369148 | 2:-79722834 | MsG0280011113.01.T01:CDS |
| TACTTTACCGTGCCTGATCT+TGG | 0.385640 | 2:-79722085 | MsG0280011113.01.T01:CDS |
| TCAACTCAAAGTATTGTATT+CGG | 0.385669 | 2:+79721928 | None:intergenic |
| TGGTTGCTAGCATGAGTTAC+TGG | 0.389027 | 2:+79722202 | None:intergenic |
| ACTTGGCATATGTCACATCT+AGG | 0.395238 | 2:+79724077 | None:intergenic |
| GCACAGCAAATCATTGTTGC+AGG | 0.405281 | 2:+79724206 | None:intergenic |
| TTCCATGCAGTTTGGAGAGA+TGG | 0.460835 | 2:-79722302 | MsG0280011113.01.T01:CDS |
| CAAAATATCAACTCAAGTAA+TGG | 0.465158 | 2:+79724302 | None:intergenic |
| CATTTGCTTCATCCAAGATC+AGG | 0.470656 | 2:+79722073 | None:intergenic |
| TATTGTATTCGGAGAGAAGT+AGG | 0.478824 | 2:+79721939 | None:intergenic |
| AGGAACTTCAGCTGCAGCCA+TGG | 0.492244 | 2:+79722231 | None:intergenic |
| TTTCATGGCAACTTGGATAC+CGG | 0.500273 | 2:+79722948 | None:intergenic |
| AAGTCAGGCACTTGCTGAGA+AGG | 0.502751 | 2:+79722847 | None:intergenic |
| TACCGGTGGCAAGGAAGCGC+TGG | 0.507223 | 2:+79722965 | None:intergenic |
| TGATGTGTATTCCTCTTAGG+TGG | 0.511604 | 2:+79722886 | None:intergenic |
| TTTGTTAGACATGTGTGACT+TGG | 0.512562 | 2:+79722159 | None:intergenic |
| CTCACTTGGAACCACCTAAG+AGG | 0.518615 | 2:-79722897 | MsG0280011113.01.T01:CDS |
| AGTTAGATTTCATGGCAACT+TGG | 0.524204 | 2:+79722941 | None:intergenic |
| AGCGCTGGTGATTTGCAGAA+AGG | 0.527070 | 2:+79722980 | None:intergenic |
| TGCAGTTTGGAGAGATGGAA+TGG | 0.544384 | 2:-79722297 | MsG0280011113.01.T01:CDS |
| CCCCAAGGAGGTGTAAAGTC+AGG | 0.545918 | 2:+79722832 | None:intergenic |
| TTCCATCTCTCCAAACTGCA+TGG | 0.555768 | 2:+79722300 | None:intergenic |
| CACCAGCGCTTCCTTGCCAC+CGG | 0.564595 | 2:-79722967 | MsG0280011113.01.T01:CDS |
| AGACGACGAACAAACTCACT+TGG | 0.565694 | 2:-79722911 | MsG0280011113.01.T01:CDS |
| GATGGAATGGTTCACAGAGG+AGG | 0.579999 | 2:-79722284 | MsG0280011113.01.T01:CDS |
| CTTGGCATATGTCACATCTA+GGG | 0.582493 | 2:+79724078 | None:intergenic |
| ATGGAATGGTTCACAGAGGA+GGG | 0.583205 | 2:-79722283 | MsG0280011113.01.T01:CDS |
| CAACTTGGATACCGGTGGCA+AGG | 0.586081 | 2:+79722956 | None:intergenic |
| AAGTATGTTTATAAGTTGTG+TGG | 0.591103 | 2:-79721906 | MsG0280011113.01.T01:three_prime_UTR |
| TGACTTCACTCAAGAAGCCA+TGG | 0.595191 | 2:-79722248 | MsG0280011113.01.T01:CDS |
| GACGAATCGATTCATTTACC+AGG | 0.619460 | 2:-79723006 | MsG0280011113.01.T01:CDS |
| GGATGAAGCAAATGATCATG+TGG | 0.623188 | 2:-79722064 | MsG0280011113.01.T01:exon |
| GCTTCATCCAAGATCAGGCA+CGG | 0.625901 | 2:+79722078 | None:intergenic |
| AGCTTGCAAGCAAACATCAG+AGG | 0.630860 | 2:-79724130 | MsG0280011113.01.T01:CDS |
| CATGGCAACTTGGATACCGG+TGG | 0.632565 | 2:+79722951 | None:intergenic |
| GCATGAGTTACTGGAAGCTG+AGG | 0.655267 | 2:+79722211 | None:intergenic |
| AATAAGTCATCAACACCCCA+AGG | 0.661072 | 2:+79722817 | None:intergenic |
| CCTGACTTTACACCTCCTTG+GGG | 0.669620 | 2:-79722832 | MsG0280011113.01.T01:CDS |
| GATGAAGCAAATGATCATGT+GGG | 0.669991 | 2:-79722063 | MsG0280011113.01.T01:exon |
| AGATAGGGCACTCTTCTGTG+AGG | 0.701688 | 2:-79723034 | MsG0280011113.01.T01:CDS |
| AAGTCATCAACACCCCAAGG+AGG | 0.755244 | 2:+79722820 | None:intergenic |
| AGAGATGGAATGGTTCACAG+AGG | 0.780922 | 2:-79722287 | MsG0280011113.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTGTATAATATAATATTCA+TGG | + | Chr2:79721891-79721910 | None:intergenic | 10.0% |
| !!! | TATTTCTATAATAAAAGATA+GGG | - | Chr2:79722694-79722713 | MsG0280011113.01.T01:intron | 10.0% |
| !!! | TTATTTCTATAATAAAAGAT+AGG | - | Chr2:79722693-79722712 | MsG0280011113.01.T01:intron | 10.0% |
| !! | AAAAAAACAAGAGAAAATTA+AGG | + | Chr2:79722229-79722248 | None:intergenic | 15.0% |
| !! | ACAATTTCAAAATCTTAATT+TGG | + | Chr2:79724304-79724323 | None:intergenic | 15.0% |
| !!! | ATTTGACTATTTTATCTTTT+AGG | + | Chr2:79722899-79722918 | None:intergenic | 15.0% |
| !!! | TTTGACTATTTTATCTTTTA+GGG | + | Chr2:79722898-79722917 | None:intergenic | 15.0% |
| !! | AAAAGTTATAGTATACTTTC+TGG | - | Chr2:79722406-79722425 | MsG0280011113.01.T01:intron | 20.0% |
| !! | ACAAAATAAGTAACAGTTAT+AGG | + | Chr2:79723148-79723167 | None:intergenic | 20.0% |
| !! | ATCATGTATCATTAGATAAT+AGG | + | Chr2:79723858-79723877 | None:intergenic | 20.0% |
| !! | ATCTTCATATAGTATAAGAT+AGG | + | Chr2:79722464-79722483 | None:intergenic | 20.0% |
| !! | TGAAATCGAATATTTAACTA+AGG | + | Chr2:79723579-79723598 | None:intergenic | 20.0% |
| !! | TTTGTTCTTAAAGTTTCATT+AGG | - | Chr2:79721985-79722004 | MsG0280011113.01.T01:three_prime_UTR | 20.0% |
| !!! | GAGACAAAAAACATTTTATA+AGG | + | Chr2:79723617-79723636 | None:intergenic | 20.0% |
| !!! | TTACAAAACTACATGTTTTT+AGG | + | Chr2:79723649-79723668 | None:intergenic | 20.0% |
| !!! | TTGCAACTTTATTTCATAAT+TGG | - | Chr2:79723512-79723531 | MsG0280011113.01.T01:intron | 20.0% |
| !!! | TTTTGTTATAATTGAGCTAA+GGG | + | Chr2:79723825-79723844 | None:intergenic | 20.0% |
| ! | AAGTATGTTTATAAGTTGTG+TGG | - | Chr2:79724362-79724381 | MsG0280011113.01.T01:five_prime_UTR | 25.0% |
| ! | AATTTGTACGAACTAAAATG+TGG | - | Chr2:79723667-79723686 | MsG0280011113.01.T01:intron | 25.0% |
| ! | ACAAGTTAAAGAGCTTAAAA+AGG | + | Chr2:79722850-79722869 | None:intergenic | 25.0% |
| ! | CAAAATATCAACTCAAGTAA+TGG | + | Chr2:79721969-79721988 | None:intergenic | 25.0% |
| ! | CTTAGCTCAATTATAACAAA+AGG | - | Chr2:79723824-79723843 | MsG0280011113.01.T01:intron | 25.0% |
| ! | TACTATATGAAGATGAAATG+TGG | - | Chr2:79722470-79722489 | MsG0280011113.01.T01:intron | 25.0% |
| ! | TCATGTGGGAATAATTTATT+TGG | - | Chr2:79724219-79724238 | MsG0280011113.01.T01:CDS | 25.0% |
| ! | TGAAGCACAATAAGAAAAAA+AGG | + | Chr2:79723940-79723959 | None:intergenic | 25.0% |
| ! | TTCATACATGAGAAACTAAT+AGG | - | Chr2:79722308-79722327 | MsG0280011113.01.T01:CDS | 25.0% |
| ! | TTGAGTTTATCTACTAGTAT+TGG | + | Chr2:79723064-79723083 | None:intergenic | 25.0% |
| !! | CAAATGTAGAAAGTTTTTCT+TGG | - | Chr2:79722756-79722775 | MsG0280011113.01.T01:intron | 25.0% |
| !! | CATATTTTGTGTTGAAGATA+GGG | - | Chr2:79723219-79723238 | MsG0280011113.01.T01:intron | 25.0% |
| !! | TAACCTCTTTTATACACTTT+AGG | - | Chr2:79722630-79722649 | MsG0280011113.01.T01:intron | 25.0% |
| !! | TAAGGTGCTAATTAATTACT+TGG | + | Chr2:79722211-79722230 | None:intergenic | 25.0% |
| !! | TCATATTTTGTGTTGAAGAT+AGG | - | Chr2:79723218-79723237 | MsG0280011113.01.T01:intron | 25.0% |
| !! | TTACAAATTTTGTCAGTTCA+TGG | + | Chr2:79723551-79723570 | None:intergenic | 25.0% |
| !!! | CTTTTGTTATAATTGAGCTA+AGG | + | Chr2:79723826-79723845 | None:intergenic | 25.0% |
| !!! | TCAACTCAAAGTATTGTATT+CGG | + | Chr2:79724343-79724362 | None:intergenic | 25.0% |
| !!! | TGTTGACTGAATTTTACTTT+TGG | - | Chr2:79722502-79722521 | MsG0280011113.01.T01:intron | 25.0% |
| AAAGTTAAGACAACATACCT+TGG | + | Chr2:79722338-79722357 | None:intergenic | 30.0% | |
| AAGCCTAAAGTGTATAAAAG+AGG | + | Chr2:79722636-79722655 | None:intergenic | 30.0% | |
| ACTGTTTACATAAGTCATTC+CGG | - | Chr2:79722939-79722958 | MsG0280011113.01.T01:CDS | 30.0% | |
| AGTTTCTGTGTGATGAATAA+TGG | + | Chr2:79724089-79724108 | None:intergenic | 30.0% | |
| ATAAAACAACAAAGACAGCT+AGG | - | Chr2:79723728-79723747 | MsG0280011113.01.T01:intron | 30.0% | |
| TAAAACAACAAAGACAGCTA+GGG | - | Chr2:79723729-79723748 | MsG0280011113.01.T01:intron | 30.0% | |
| TTTCACCTGTATGTACAAAT+AGG | - | Chr2:79723183-79723202 | MsG0280011113.01.T01:intron | 30.0% | |
| ! | CAAACAACATTGTCCATTTT+TGG | - | Chr2:79721912-79721931 | MsG0280011113.01.T01:three_prime_UTR | 30.0% |
| ! | TAACTGTTGAGATCTAGTTT+AGG | - | Chr2:79722546-79722565 | MsG0280011113.01.T01:intron | 30.0% |
| ! | TTTTCTTATTGTGCTTCAGA+AGG | - | Chr2:79723942-79723961 | MsG0280011113.01.T01:intron | 30.0% |
| !! | GAAGTGTTTTAAGCCAAAAA+TGG | + | Chr2:79721928-79721947 | None:intergenic | 30.0% |
| AATGTTAACTTATGCCCTTG+AGG | - | Chr2:79722718-79722737 | MsG0280011113.01.T01:intron | 35.0% | |
| ACTTGATGTGTATTCCTCTT+AGG | + | Chr2:79723388-79723407 | None:intergenic | 35.0% | |
| AGAAACTAATAGGTCATCCA+AGG | - | Chr2:79722318-79722337 | MsG0280011113.01.T01:intron | 35.0% | |
| AGTTAGATTTCATGGCAACT+TGG | + | Chr2:79723330-79723349 | None:intergenic | 35.0% | |
| CTTCTTAACTTATGCCTCAA+GGG | + | Chr2:79722735-79722754 | None:intergenic | 35.0% | |
| CTTGTCCTATTTGTACATAC+AGG | + | Chr2:79723191-79723210 | None:intergenic | 35.0% | |
| GATGAAGCAAATGATCATGT+GGG | - | Chr2:79724205-79724224 | MsG0280011113.01.T01:CDS | 35.0% | |
| GTACATACAGGTGAAACAAA+AGG | + | Chr2:79723179-79723198 | None:intergenic | 35.0% | |
| TATTGTATTCGGAGAGAAGT+AGG | + | Chr2:79724332-79724351 | None:intergenic | 35.0% | |
| TCACGTATGAGTTCAATTCT+AGG | + | Chr2:79724138-79724157 | None:intergenic | 35.0% | |
| TCTTCTTAACTTATGCCTCA+AGG | + | Chr2:79722736-79722755 | None:intergenic | 35.0% | |
| TTTGTTAGACATGTGTGACT+TGG | + | Chr2:79724112-79724131 | None:intergenic | 35.0% | |
| !! | GCTTATTTTCATAAGCTCTC+CGG | + | Chr2:79722961-79722980 | None:intergenic | 35.0% |
| !! | TGAATTTTACTTTTGGCCCT+TGG | - | Chr2:79722509-79722528 | MsG0280011113.01.T01:intron | 35.0% |
| AATAAGTCATCAACACCCCA+AGG | + | Chr2:79723454-79723473 | None:intergenic | 40.0% | |
| ACTTGGCATATGTCACATCT+AGG | + | Chr2:79722194-79722213 | None:intergenic | 40.0% | |
| CATACAGGTGAAACAAAAGG+AGG | + | Chr2:79723176-79723195 | None:intergenic | 40.0% | |
| CATTTGCTTCATCCAAGATC+AGG | + | Chr2:79724198-79724217 | None:intergenic | 40.0% | |
| CTTGGCATATGTCACATCTA+GGG | + | Chr2:79722193-79722212 | None:intergenic | 40.0% | |
| GCATTTGTGAGACTGTTTGA+AGG | + | Chr2:79723042-79723061 | None:intergenic | 40.0% | |
| GGATGAAGCAAATGATCATG+TGG | - | Chr2:79724204-79724223 | MsG0280011113.01.T01:CDS | 40.0% | |
| TAACCAAGCACAAAGTCCAA+GGG | + | Chr2:79722528-79722547 | None:intergenic | 40.0% | |
| TGATGTGTATTCCTCTTAGG+TGG | + | Chr2:79723385-79723404 | None:intergenic | 40.0% | |
| TTAACCAAGCACAAAGTCCA+AGG | + | Chr2:79722529-79722548 | None:intergenic | 40.0% | |
| TTTCATGGCAACTTGGATAC+CGG | + | Chr2:79723323-79723342 | None:intergenic | 40.0% | |
| TTTGGCGCAGTTAGATTTCA+TGG | + | Chr2:79723338-79723357 | None:intergenic | 40.0% | |
| ! | GACGAATCGATTCATTTACC+AGG | - | Chr2:79723262-79723281 | MsG0280011113.01.T01:intron | 40.0% |
| !! | CATGTTAACTTGTGCCCTAA+GGG | + | Chr2:79722874-79722893 | None:intergenic | 40.0% |
| !! | CTCTTTAACTTGTGCCCTTA+GGG | - | Chr2:79722857-79722876 | MsG0280011113.01.T01:CDS | 40.0% |
| !! | GACTGTTTGAAGGCATGTTT+TGG | + | Chr2:79723032-79723051 | None:intergenic | 40.0% |
| !! | TCATGTTAACTTGTGCCCTA+AGG | + | Chr2:79722875-79722894 | None:intergenic | 40.0% |
| !! | TTGGGGTGTTGATGACTTAT+TGG | - | Chr2:79723453-79723472 | MsG0280011113.01.T01:intron | 40.0% |
| AGACGACGAACAAACTCACT+TGG | - | Chr2:79723357-79723376 | MsG0280011113.01.T01:intron | 45.0% | |
| AGAGATGGAATGGTTCACAG+AGG | - | Chr2:79723981-79724000 | MsG0280011113.01.T01:intron | 45.0% | |
| AGCTTGCAAGCAAACATCAG+AGG | - | Chr2:79722138-79722157 | MsG0280011113.01.T01:CDS | 45.0% | |
| ATGGAATGGTTCACAGAGGA+GGG | - | Chr2:79723985-79724004 | MsG0280011113.01.T01:intron | 45.0% | |
| CAGAAGGATTCCATGCAGTT+TGG | - | Chr2:79723958-79723977 | MsG0280011113.01.T01:intron | 45.0% | |
| GCACAGCAAATCATTGTTGC+AGG | + | Chr2:79722065-79722084 | None:intergenic | 45.0% | |
| TACTTTACCGTGCCTGATCT+TGG | - | Chr2:79724183-79724202 | MsG0280011113.01.T01:CDS | 45.0% | |
| TGACTTCACTCAAGAAGCCA+TGG | - | Chr2:79724020-79724039 | MsG0280011113.01.T01:intron | 45.0% | |
| TGCAGTTTGGAGAGATGGAA+TGG | - | Chr2:79723971-79723990 | MsG0280011113.01.T01:intron | 45.0% | |
| TGGTTGCTAGCATGAGTTAC+TGG | + | Chr2:79724069-79724088 | None:intergenic | 45.0% | |
| TTCCATCTCTCCAAACTGCA+TGG | + | Chr2:79723971-79723990 | None:intergenic | 45.0% | |
| TTCCATGCAGTTTGGAGAGA+TGG | - | Chr2:79723966-79723985 | MsG0280011113.01.T01:intron | 45.0% | |
| ! | CTTTCTGGAGATGTAGTGTG+AGG | - | Chr2:79722421-79722440 | MsG0280011113.01.T01:intron | 45.0% |
| ! | GTGAGTTTGTTCGTCGTCTT+TGG | + | Chr2:79723356-79723375 | None:intergenic | 45.0% |
| ! | TGATTTGCAGAAAGGCTTCC+TGG | + | Chr2:79723283-79723302 | None:intergenic | 45.0% |
| ! | TTCACAGAGGAGGGTCTTTT+TGG | - | Chr2:79723994-79724013 | MsG0280011113.01.T01:intron | 45.0% |
| !! | GCTCTTTAACTTGTGCCCTT+AGG | - | Chr2:79722856-79722875 | MsG0280011113.01.T01:CDS | 45.0% |
| AAGTCATCAACACCCCAAGG+AGG | + | Chr2:79723451-79723470 | None:intergenic | 50.0% | |
| CCTGACTTTACACCTCCTTG+GGG | - | Chr2:79723436-79723455 | MsG0280011113.01.T01:intron | 50.0% | |
| CTCACTTGGAACCACCTAAG+AGG | - | Chr2:79723371-79723390 | MsG0280011113.01.T01:intron | 50.0% | |
| GATGGAATGGTTCACAGAGG+AGG | - | Chr2:79723984-79724003 | MsG0280011113.01.T01:intron | 50.0% | |
| GCATGAGTTACTGGAAGCTG+AGG | + | Chr2:79724060-79724079 | None:intergenic | 50.0% | |
| GCCTGACTTTACACCTCCTT+GGG | - | Chr2:79723435-79723454 | MsG0280011113.01.T01:intron | 50.0% | |
| GCTTCATCCAAGATCAGGCA+CGG | + | Chr2:79724193-79724212 | None:intergenic | 50.0% | |
| TGCCTGACTTTACACCTCCT+TGG | - | Chr2:79723434-79723453 | MsG0280011113.01.T01:intron | 50.0% | |
| ! | AAGTCAGGCACTTGCTGAGA+AGG | + | Chr2:79723424-79723443 | None:intergenic | 50.0% |
| ! | AGATAGGGCACTCTTCTGTG+AGG | - | Chr2:79723234-79723253 | MsG0280011113.01.T01:intron | 50.0% |
| !! | AGCGCTGGTGATTTGCAGAA+AGG | + | Chr2:79723291-79723310 | None:intergenic | 50.0% |
| AGGAACTTCAGCTGCAGCCA+TGG | + | Chr2:79724040-79724059 | None:intergenic | 55.0% | |
| CAACTTGGATACCGGTGGCA+AGG | + | Chr2:79723315-79723334 | None:intergenic | 55.0% | |
| CATGGCAACTTGGATACCGG+TGG | + | Chr2:79723320-79723339 | None:intergenic | 55.0% | |
| TGGCCCTTGGACTTTGTGCT+TGG | - | Chr2:79722522-79722541 | MsG0280011113.01.T01:intron | 55.0% | |
| ! | CCCCAAGGAGGTGTAAAGTC+AGG | + | Chr2:79723439-79723458 | None:intergenic | 55.0% |
| CACCAGCGCTTCCTTGCCAC+CGG | - | Chr2:79723301-79723320 | MsG0280011113.01.T01:intron | 65.0% | |
| ! | TACCGGTGGCAAGGAAGCGC+TGG | + | Chr2:79723306-79723325 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr2 | gene | 79721865 | 79724425 | 79721865 | ID=MsG0280011113.01;Name=MsG0280011113.01 |
| Chr2 | mRNA | 79721865 | 79724425 | 79721865 | ID=MsG0280011113.01.T01;Parent=MsG0280011113.01;Name=MsG0280011113.01.T01;_AED=0.50;_eAED=0.50;_QI=164|1|1|1|1|1|3|216|243 |
| Chr2 | exon | 79721865 | 79722329 | 79721865 | ID=MsG0280011113.01.T01:exon:10091;Parent=MsG0280011113.01.T01 |
| Chr2 | exon | 79722786 | 79723085 | 79722786 | ID=MsG0280011113.01.T01:exon:10090;Parent=MsG0280011113.01.T01 |
| Chr2 | exon | 79724079 | 79724425 | 79724079 | ID=MsG0280011113.01.T01:exon:10089;Parent=MsG0280011113.01.T01 |
| Chr2 | five_prime_UTR | 79724262 | 79724425 | 79724262 | ID=MsG0280011113.01.T01:five_prime_utr;Parent=MsG0280011113.01.T01 |
| Chr2 | CDS | 79724079 | 79724261 | 79724079 | ID=MsG0280011113.01.T01:cds;Parent=MsG0280011113.01.T01 |
| Chr2 | CDS | 79722786 | 79723085 | 79722786 | ID=MsG0280011113.01.T01:cds;Parent=MsG0280011113.01.T01 |
| Chr2 | CDS | 79722081 | 79722329 | 79722081 | ID=MsG0280011113.01.T01:cds;Parent=MsG0280011113.01.T01 |
| Chr2 | three_prime_UTR | 79721865 | 79722080 | 79721865 | ID=MsG0280011113.01.T01:three_prime_utr;Parent=MsG0280011113.01.T01 |
| Gene Sequence |
| Protein sequence |
