Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016451.01.T01 | XP_013461369.1 | 93.684 | 570 | 36 | 0 | 1 | 570 | 1 | 570 | 0 | 1077 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016451.01.T01 | Q9SDQ3 | 59.396 | 596 | 195 | 16 | 5 | 570 | 15 | 593 | 0 | 643 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016451.01.T01 | A0A072V083 | 93.684 | 570 | 36 | 0 | 1 | 570 | 1 | 570 | 0.0 | 1077 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180002006.01 | MsG0380016451.01 | 0.819215 | 1.305777e-52 | 9.986045e-50 |
| MsG0180003908.01 | MsG0380016451.01 | -0.810747 | 9.885287e-51 | 6.008177e-48 |
| MsG0180005707.01 | MsG0380016451.01 | 0.852327 | 4.964415e-61 | 1.033731e-57 |
| MsG0180005720.01 | MsG0380016451.01 | 0.853985 | 1.662965e-61 | 3.659286e-58 |
| MsG0380015408.01 | MsG0380016451.01 | 0.817920 | 2.566876e-52 | 1.894277e-49 |
| MsG0380016451.01 | MsG0480019923.01 | 0.817080 | 3.970310e-52 | 2.863123e-49 |
| MsG0380016451.01 | MsG0480022389.01 | 0.800763 | 1.237265e-48 | 5.808639e-46 |
| MsG0380016451.01 | MsG0680030638.01 | 0.804469 | 2.128537e-49 | 1.098329e-46 |
| MsG0380016451.01 | MsG0680035841.01 | 0.806008 | 1.013329e-49 | 5.440309e-47 |
| MsG0380016451.01 | MsG0780038399.01 | 0.843003 | 1.829800e-58 | 2.823485e-55 |
| MsG0380016451.01 | MsG0880043321.01 | 0.826924 | 2.076458e-54 | 1.974903e-51 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016451.01.T01 | MTR_3g089055 | 93.684 | 570 | 36 | 0 | 1 | 570 | 1 | 570 | 0.0 | 1077 |
| MsG0380016451.01.T01 | MTR_3g089055 | 93.805 | 565 | 35 | 0 | 6 | 570 | 1 | 565 | 0.0 | 1068 |
| MsG0380016451.01.T01 | MTR_1g029420 | 69.282 | 599 | 143 | 7 | 6 | 570 | 1 | 592 | 0.0 | 787 |
| MsG0380016451.01.T01 | MTR_5g097480 | 50.962 | 416 | 198 | 1 | 161 | 570 | 129 | 544 | 6.59e-152 | 447 |
| MsG0380016451.01.T01 | MTR_2g082090 | 54.595 | 370 | 168 | 0 | 201 | 570 | 210 | 579 | 9.98e-145 | 430 |
| MsG0380016451.01.T01 | MTR_3g056110 | 49.344 | 381 | 192 | 1 | 191 | 570 | 162 | 542 | 2.56e-138 | 412 |
| MsG0380016451.01.T01 | MTR_5g094450 | 51.295 | 386 | 183 | 3 | 190 | 570 | 147 | 532 | 6.07e-137 | 409 |
| MsG0380016451.01.T01 | MTR_4g133660 | 47.568 | 370 | 193 | 1 | 201 | 569 | 173 | 542 | 2.99e-125 | 379 |
| MsG0380016451.01.T01 | MTR_2g026250 | 46.631 | 371 | 197 | 1 | 201 | 570 | 226 | 596 | 5.71e-121 | 370 |
| MsG0380016451.01.T01 | MTR_7g057230 | 38.106 | 454 | 258 | 9 | 124 | 569 | 218 | 656 | 5.65e-86 | 280 |
| MsG0380016451.01.T01 | MTR_6g047750 | 40.153 | 391 | 192 | 10 | 201 | 570 | 293 | 662 | 1.18e-79 | 264 |
| MsG0380016451.01.T01 | MTR_7g027190 | 37.468 | 387 | 212 | 5 | 202 | 570 | 299 | 673 | 3.34e-76 | 255 |
| MsG0380016451.01.T01 | MTR_3g065980 | 34.465 | 383 | 220 | 8 | 204 | 570 | 173 | 540 | 1.79e-65 | 223 |
| MsG0380016451.01.T01 | MTR_8g442410 | 35.171 | 381 | 222 | 7 | 204 | 570 | 156 | 525 | 1.46e-64 | 220 |
| MsG0380016451.01.T01 | MTR_4g064160 | 32.162 | 370 | 250 | 1 | 201 | 569 | 314 | 683 | 1.78e-62 | 218 |
| MsG0380016451.01.T01 | MTR_7g074650 | 36.066 | 366 | 219 | 6 | 206 | 570 | 441 | 792 | 1.02e-61 | 218 |
| MsG0380016451.01.T01 | MTR_4g104020 | 32.461 | 382 | 236 | 5 | 202 | 570 | 148 | 520 | 3.78e-60 | 208 |
| MsG0380016451.01.T01 | MTR_7g062120 | 30.730 | 397 | 268 | 2 | 181 | 570 | 344 | 740 | 2.73e-59 | 210 |
| MsG0380016451.01.T01 | MTR_4g064200 | 31.707 | 369 | 247 | 4 | 203 | 569 | 284 | 649 | 2.69e-57 | 203 |
| MsG0380016451.01.T01 | MTR_2g097310 | 30.645 | 372 | 251 | 3 | 201 | 569 | 270 | 637 | 1.43e-55 | 198 |
| MsG0380016451.01.T01 | MTR_4g076140 | 28.571 | 455 | 254 | 8 | 176 | 570 | 26 | 469 | 1.50e-55 | 194 |
| MsG0380016451.01.T01 | MTR_2g097350 | 32.086 | 374 | 243 | 6 | 201 | 569 | 272 | 639 | 1.50e-55 | 198 |
| MsG0380016451.01.T01 | MTR_4g097080 | 30.688 | 378 | 249 | 6 | 201 | 570 | 131 | 503 | 1.59e-55 | 195 |
| MsG0380016451.01.T01 | MTR_2g097390 | 30.376 | 372 | 252 | 3 | 201 | 569 | 273 | 640 | 3.93e-55 | 197 |
| MsG0380016451.01.T01 | MTR_4g064150 | 29.412 | 374 | 259 | 3 | 201 | 569 | 359 | 732 | 1.57e-54 | 197 |
| MsG0380016451.01.T01 | MTR_4g102790 | 35.602 | 382 | 219 | 14 | 203 | 569 | 292 | 661 | 1.58e-54 | 196 |
| MsG0380016451.01.T01 | MTR_4g064120 | 28.054 | 442 | 303 | 5 | 135 | 567 | 188 | 623 | 2.07e-54 | 195 |
| MsG0380016451.01.T01 | MTR_4g064180 | 28.217 | 443 | 303 | 5 | 135 | 568 | 188 | 624 | 5.34e-54 | 194 |
| MsG0380016451.01.T01 | MTR_2g097410 | 30.851 | 376 | 249 | 7 | 201 | 569 | 369 | 740 | 5.90e-54 | 196 |
| MsG0380016451.01.T01 | MTR_5g009080 | 28.372 | 430 | 241 | 7 | 202 | 570 | 55 | 478 | 1.82e-53 | 189 |
| MsG0380016451.01.T01 | MTR_3g022830 | 28.741 | 421 | 244 | 5 | 200 | 570 | 22 | 436 | 1.07e-51 | 183 |
| MsG0380016451.01.T01 | MTR_4g077760 | 32.447 | 376 | 231 | 8 | 204 | 570 | 194 | 555 | 1.82e-50 | 182 |
| MsG0380016451.01.T01 | MTR_5g015490 | 31.538 | 390 | 244 | 9 | 197 | 570 | 108 | 490 | 1.19e-49 | 179 |
| MsG0380016451.01.T01 | MTR_2g097467 | 28.385 | 384 | 269 | 4 | 187 | 569 | 275 | 653 | 2.37e-49 | 181 |
| MsG0380016451.01.T01 | MTR_2g097463 | 28.500 | 400 | 279 | 4 | 171 | 569 | 261 | 654 | 9.65e-49 | 179 |
| MsG0380016451.01.T01 | MTR_4g076020 | 33.154 | 371 | 214 | 11 | 206 | 570 | 87 | 429 | 1.23e-48 | 175 |
| MsG0380016451.01.T01 | MTR_2g097473 | 27.312 | 465 | 310 | 9 | 122 | 569 | 200 | 653 | 1.50e-48 | 179 |
| MsG0380016451.01.T01 | MTR_3g072710 | 31.980 | 394 | 229 | 11 | 202 | 569 | 119 | 499 | 5.90e-48 | 175 |
| MsG0380016451.01.T01 | MTR_1g096030 | 29.471 | 397 | 236 | 12 | 202 | 570 | 79 | 459 | 1.12e-45 | 167 |
| MsG0380016451.01.T01 | MTR_1g069725 | 32.447 | 376 | 223 | 11 | 203 | 569 | 109 | 462 | 7.78e-45 | 165 |
| MsG0380016451.01.T01 | MTR_5g015950 | 27.488 | 422 | 244 | 8 | 201 | 569 | 33 | 445 | 5.88e-42 | 157 |
| MsG0380016451.01.T01 | MTR_3g053270 | 27.488 | 422 | 244 | 8 | 201 | 569 | 33 | 445 | 5.88e-42 | 157 |
| MsG0380016451.01.T01 | MTR_2g097380 | 27.978 | 361 | 228 | 4 | 210 | 569 | 231 | 560 | 3.38e-41 | 157 |
| MsG0380016451.01.T01 | MTR_2g099110 | 29.306 | 389 | 245 | 8 | 202 | 570 | 73 | 451 | 4.64e-41 | 154 |
| MsG0380016451.01.T01 | MTR_2g089100 | 26.244 | 442 | 278 | 8 | 161 | 569 | 16 | 442 | 1.76e-40 | 153 |
| MsG0380016451.01.T01 | MTR_5g058860 | 30.548 | 383 | 247 | 10 | 202 | 569 | 118 | 496 | 6.85e-39 | 149 |
| MsG0380016451.01.T01 | MTR_4g095500 | 26.606 | 436 | 274 | 7 | 179 | 569 | 33 | 467 | 3.88e-38 | 147 |
| MsG0380016451.01.T01 | MTR_2g034250 | 25.610 | 410 | 265 | 10 | 183 | 570 | 194 | 585 | 7.92e-29 | 121 |
| MsG0380016451.01.T01 | MTR_0092s0100 | 27.957 | 372 | 247 | 8 | 204 | 570 | 376 | 731 | 3.27e-28 | 120 |
| MsG0380016451.01.T01 | MTR_0092s0100 | 27.957 | 372 | 247 | 8 | 204 | 570 | 373 | 728 | 3.43e-28 | 120 |
| MsG0380016451.01.T01 | MTR_2g034260 | 27.642 | 369 | 220 | 12 | 183 | 527 | 194 | 539 | 1.16e-27 | 117 |
| MsG0380016451.01.T01 | MTR_7g109580 | 26.385 | 379 | 257 | 10 | 202 | 570 | 188 | 554 | 2.31e-27 | 116 |
| MsG0380016451.01.T01 | MTR_2g034280 | 25.123 | 406 | 269 | 11 | 183 | 570 | 187 | 575 | 1.29e-25 | 111 |
| MsG0380016451.01.T01 | MTR_8g093070 | 27.177 | 379 | 242 | 12 | 203 | 569 | 139 | 495 | 1.89e-24 | 107 |
| MsG0380016451.01.T01 | MTR_4g026485 | 25.995 | 377 | 247 | 11 | 204 | 570 | 270 | 624 | 1.06e-23 | 105 |
| MsG0380016451.01.T01 | MTR_8g020840 | 23.632 | 402 | 265 | 15 | 195 | 570 | 163 | 548 | 1.56e-19 | 92.4 |
| MsG0380016451.01.T01 | MTR_1g086970 | 27.526 | 287 | 186 | 9 | 292 | 570 | 206 | 478 | 1.82e-19 | 92.0 |
| MsG0380016451.01.T01 | MTR_3g022580 | 30.864 | 162 | 106 | 2 | 409 | 570 | 28 | 183 | 5.36e-18 | 82.8 |
| MsG0380016451.01.T01 | MTR_3g022005 | 37.634 | 93 | 58 | 0 | 478 | 570 | 33 | 125 | 1.82e-13 | 67.8 |
| MsG0380016451.01.T01 | MTR_4g074310 | 28.390 | 236 | 123 | 6 | 206 | 436 | 2 | 196 | 2.48e-12 | 67.0 |
| MsG0380016451.01.T01 | MTR_8g077940 | 21.642 | 402 | 237 | 14 | 204 | 570 | 183 | 541 | 2.82e-12 | 69.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016451.01.T01 | AT1G21450 | 59.396 | 596 | 195 | 16 | 5 | 570 | 15 | 593 | 0.0 | 643 |
| MsG0380016451.01.T01 | AT5G48150 | 52.658 | 395 | 184 | 2 | 177 | 570 | 98 | 490 | 4.57e-145 | 428 |
| MsG0380016451.01.T01 | AT5G48150 | 52.658 | 395 | 184 | 2 | 177 | 570 | 98 | 490 | 4.57e-145 | 428 |
| MsG0380016451.01.T01 | AT5G48150 | 52.658 | 395 | 184 | 2 | 177 | 570 | 98 | 490 | 4.57e-145 | 428 |
| MsG0380016451.01.T01 | AT5G48150 | 52.658 | 395 | 184 | 2 | 177 | 570 | 98 | 490 | 4.57e-145 | 428 |
| MsG0380016451.01.T01 | AT1G50600 | 51.948 | 385 | 184 | 1 | 187 | 570 | 142 | 526 | 7.47e-141 | 418 |
| MsG0380016451.01.T01 | AT1G50600 | 51.948 | 385 | 184 | 1 | 187 | 570 | 213 | 597 | 8.36e-140 | 418 |
| MsG0380016451.01.T01 | AT1G50600 | 51.948 | 385 | 184 | 1 | 187 | 570 | 217 | 601 | 1.25e-139 | 418 |
| MsG0380016451.01.T01 | AT2G04890 | 51.351 | 370 | 173 | 1 | 201 | 570 | 51 | 413 | 4.13e-133 | 394 |
| MsG0380016451.01.T01 | AT4G17230 | 47.027 | 370 | 196 | 0 | 201 | 570 | 156 | 525 | 1.48e-123 | 374 |
| MsG0380016451.01.T01 | AT4G17230 | 47.027 | 370 | 196 | 0 | 201 | 570 | 156 | 525 | 1.48e-123 | 374 |
| MsG0380016451.01.T01 | AT5G52510 | 39.221 | 385 | 209 | 5 | 201 | 570 | 266 | 640 | 2.11e-84 | 276 |
| MsG0380016451.01.T01 | AT1G66350 | 37.366 | 372 | 207 | 9 | 204 | 570 | 156 | 506 | 1.33e-68 | 231 |
| MsG0380016451.01.T01 | AT3G03450 | 36.340 | 377 | 215 | 9 | 204 | 570 | 184 | 545 | 1.66e-67 | 228 |
| MsG0380016451.01.T01 | AT5G17490 | 35.242 | 454 | 246 | 13 | 141 | 570 | 87 | 516 | 3.56e-67 | 227 |
| MsG0380016451.01.T01 | AT3G54220 | 36.856 | 369 | 213 | 8 | 206 | 569 | 296 | 649 | 5.22e-66 | 227 |
| MsG0380016451.01.T01 | AT1G07530 | 34.015 | 391 | 253 | 3 | 181 | 569 | 377 | 764 | 9.93e-64 | 223 |
| MsG0380016451.01.T01 | AT5G66770 | 36.605 | 377 | 216 | 9 | 204 | 570 | 221 | 584 | 1.80e-60 | 211 |
| MsG0380016451.01.T01 | AT1G14920 | 34.048 | 373 | 224 | 10 | 204 | 570 | 173 | 529 | 7.70e-60 | 207 |
| MsG0380016451.01.T01 | AT2G01570 | 34.301 | 379 | 215 | 12 | 204 | 570 | 225 | 581 | 2.46e-58 | 205 |
| MsG0380016451.01.T01 | AT5G59450 | 30.273 | 403 | 269 | 5 | 177 | 570 | 199 | 598 | 8.91e-57 | 201 |
| MsG0380016451.01.T01 | AT2G29060 | 31.795 | 390 | 254 | 4 | 188 | 569 | 269 | 654 | 1.04e-56 | 202 |
| MsG0380016451.01.T01 | AT2G29060 | 31.795 | 390 | 254 | 4 | 188 | 569 | 306 | 691 | 1.66e-56 | 202 |
| MsG0380016451.01.T01 | AT2G37650 | 30.189 | 371 | 256 | 2 | 201 | 570 | 345 | 713 | 4.27e-56 | 201 |
| MsG0380016451.01.T01 | AT2G37650 | 30.189 | 371 | 256 | 2 | 201 | 570 | 333 | 701 | 5.04e-56 | 201 |
| MsG0380016451.01.T01 | AT3G46600 | 30.189 | 371 | 257 | 2 | 201 | 570 | 2 | 371 | 1.08e-53 | 187 |
| MsG0380016451.01.T01 | AT3G46600 | 30.189 | 371 | 257 | 2 | 201 | 570 | 178 | 547 | 1.52e-52 | 188 |
| MsG0380016451.01.T01 | AT2G29065 | 30.423 | 378 | 254 | 5 | 201 | 569 | 250 | 627 | 1.57e-52 | 190 |
| MsG0380016451.01.T01 | AT3G46600 | 30.189 | 371 | 257 | 2 | 201 | 570 | 210 | 579 | 1.77e-52 | 189 |
| MsG0380016451.01.T01 | AT5G41920 | 32.982 | 379 | 222 | 10 | 203 | 570 | 43 | 400 | 2.62e-51 | 181 |
| MsG0380016451.01.T01 | AT3G50650 | 33.705 | 359 | 210 | 7 | 226 | 570 | 198 | 542 | 5.02e-50 | 181 |
| MsG0380016451.01.T01 | AT4G37650 | 29.907 | 428 | 256 | 11 | 170 | 570 | 119 | 529 | 3.02e-49 | 179 |
| MsG0380016451.01.T01 | AT1G07520 | 27.820 | 399 | 272 | 5 | 187 | 569 | 130 | 528 | 1.81e-48 | 177 |
| MsG0380016451.01.T01 | AT1G07520 | 27.820 | 399 | 272 | 5 | 187 | 569 | 130 | 528 | 1.81e-48 | 177 |
| MsG0380016451.01.T01 | AT1G07520 | 27.820 | 399 | 272 | 5 | 187 | 569 | 294 | 692 | 3.86e-48 | 178 |
| MsG0380016451.01.T01 | AT1G07520 | 27.820 | 399 | 272 | 5 | 187 | 569 | 295 | 693 | 4.18e-48 | 178 |
| MsG0380016451.01.T01 | AT1G63100 | 33.141 | 347 | 212 | 7 | 203 | 541 | 252 | 586 | 7.72e-44 | 166 |
| MsG0380016451.01.T01 | AT1G63100 | 33.141 | 347 | 212 | 7 | 203 | 541 | 277 | 611 | 9.92e-44 | 166 |
| MsG0380016451.01.T01 | AT4G08250 | 30.117 | 342 | 219 | 7 | 238 | 569 | 145 | 476 | 2.62e-43 | 161 |
| MsG0380016451.01.T01 | AT1G55580 | 26.877 | 413 | 250 | 9 | 201 | 570 | 42 | 445 | 2.34e-39 | 149 |
| MsG0380016451.01.T01 | AT3G49950 | 27.202 | 386 | 258 | 9 | 201 | 569 | 28 | 407 | 1.06e-37 | 144 |
| MsG0380016451.01.T01 | AT1G50420 | 32.381 | 210 | 133 | 2 | 202 | 408 | 56 | 259 | 3.05e-30 | 124 |
| MsG0380016451.01.T01 | AT1G50420 | 37.748 | 151 | 91 | 2 | 422 | 570 | 330 | 479 | 1.04e-27 | 117 |
| MsG0380016451.01.T01 | AT3G60630 | 25.501 | 349 | 229 | 10 | 236 | 570 | 291 | 622 | 4.88e-21 | 97.8 |
| MsG0380016451.01.T01 | AT3G13840 | 25.750 | 400 | 268 | 11 | 183 | 570 | 128 | 510 | 7.47e-21 | 96.7 |
| MsG0380016451.01.T01 | AT2G45160 | 26.214 | 309 | 202 | 8 | 273 | 570 | 346 | 639 | 1.22e-20 | 96.3 |
| MsG0380016451.01.T01 | AT4G00150 | 23.782 | 349 | 235 | 10 | 227 | 570 | 232 | 554 | 1.38e-18 | 89.7 |
| MsG0380016451.01.T01 | AT5G67411 | 33.668 | 199 | 119 | 6 | 320 | 507 | 2 | 198 | 1.60e-17 | 81.6 |
| MsG0380016451.01.T01 | AT4G36710 | 23.580 | 352 | 245 | 9 | 227 | 570 | 150 | 485 | 6.63e-16 | 80.9 |
Find 118 sgRNAs with CRISPR-Local
Find 135 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTACAACCATGTCATTAAT+TGG | 0.171989 | 3:+83678020 | MsG0380016451.01.T01:CDS |
| GCTTATGAGAATAAGAAATT+TGG | 0.178504 | 3:-83678127 | None:intergenic |
| GAAAAGGGTGCCCTTCATTT+TGG | 0.247649 | 3:+83679661 | MsG0380016451.01.T01:CDS |
| CCATGTAGGCTGCAATTCTT+TGG | 0.255636 | 3:-83678724 | None:intergenic |
| CACCAAATCTGATCCGAAAT+TGG | 0.280682 | 3:-83678297 | None:intergenic |
| GGTATGAAGTCGCGGGAAAA+TGG | 0.287860 | 3:+83679527 | MsG0380016451.01.T01:CDS |
| CCATCACATGTTAGATTAAC+CGG | 0.296450 | 3:+83679016 | MsG0380016451.01.T01:CDS |
| GCTACTGATGCTGCTAATAT+TGG | 0.307471 | 3:-83678555 | None:intergenic |
| TCCACGACCGTTACAAGTTT+TGG | 0.308347 | 3:-83679310 | None:intergenic |
| AAGAAATAACGAAAATTTCT+AGG | 0.316566 | 3:+83678585 | MsG0380016451.01.T01:CDS |
| GTCCAATTTCGGATCAGATT+TGG | 0.328151 | 3:+83678295 | MsG0380016451.01.T01:CDS |
| TCGAAGCAAGTGTTTGAATC+AGG | 0.332729 | 3:-83678982 | None:intergenic |
| TTGATCCTAACATTATTGAT+TGG | 0.340862 | 3:+83678456 | MsG0380016451.01.T01:CDS |
| CTTATGAGAATAAGAAATTT+GGG | 0.359390 | 3:-83678126 | None:intergenic |
| TCAGCACCACGTTGCCTTGT+TGG | 0.374411 | 3:-83678269 | None:intergenic |
| GGTGCTGATCAGTCCAATTT+CGG | 0.378562 | 3:+83678284 | MsG0380016451.01.T01:CDS |
| TCACTCACATTTGTGCTCAT+TGG | 0.383131 | 3:-83679586 | None:intergenic |
| GTACAAGATAAAGGAGGAAA+AGG | 0.383813 | 3:+83679645 | MsG0380016451.01.T01:CDS |
| GGCAAGAGATATTGTTAATA+CGG | 0.384298 | 3:+83679474 | MsG0380016451.01.T01:CDS |
| GCCGCTCGCCTCGCTGAATC+CGG | 0.387906 | 3:+83678758 | MsG0380016451.01.T01:CDS |
| ATTGAGGAAGAAGAGGAATA+TGG | 0.391911 | 3:+83678413 | MsG0380016451.01.T01:CDS |
| TGATCCTAACATTATTGATT+GGG | 0.392056 | 3:+83678457 | MsG0380016451.01.T01:CDS |
| CGACGAATTGTCTCAATTCA+AGG | 0.402603 | 3:+83678692 | MsG0380016451.01.T01:CDS |
| CATTCATAAAGAAGTTGCTT+GGG | 0.414263 | 3:-83678611 | None:intergenic |
| AACAGCAGCATATTCTGAAT+TGG | 0.421315 | 3:-83678491 | None:intergenic |
| CTGTGATAGGTACAAGATAA+AGG | 0.425096 | 3:+83679636 | MsG0380016451.01.T01:CDS |
| GGGTTAACATCGATTTCCTT+TGG | 0.428305 | 3:-83678092 | None:intergenic |
| GTGAATTCAATTGAAGTTGA+TGG | 0.432801 | 3:+83678335 | MsG0380016451.01.T01:CDS |
| TCAGCCCAATCAATAATGTT+AGG | 0.434921 | 3:-83678461 | None:intergenic |
| ACCGTTGAAACGCTCTCGTC+AGG | 0.440496 | 3:-83679244 | None:intergenic |
| ATGCTGCTAATATTGGAATC+TGG | 0.446519 | 3:-83678548 | None:intergenic |
| CATGTAGGCTGCAATTCTTT+GGG | 0.448246 | 3:-83678723 | None:intergenic |
| GAATGTTGAGAGGCAATGTT+TGG | 0.449570 | 3:+83679453 | MsG0380016451.01.T01:CDS |
| ATGCAAGGAACCTCCTTCTT+CGG | 0.450058 | 3:+83678805 | MsG0380016451.01.T01:CDS |
| AAGTTAAGTTGTACTGTGAT+AGG | 0.450787 | 3:+83679623 | MsG0380016451.01.T01:CDS |
| CCAAAGAATTGCAGCCTACA+TGG | 0.451697 | 3:+83678724 | MsG0380016451.01.T01:CDS |
| TGTCTTCCCAACCAAAATGA+AGG | 0.452507 | 3:-83679672 | None:intergenic |
| GAGATCAAAACTAGAAGCAT+TGG | 0.459866 | 3:+83678364 | MsG0380016451.01.T01:CDS |
| TCTGGAGACGAATACTCCTT+TGG | 0.473491 | 3:-83678530 | None:intergenic |
| TTCGGATCAGATTTGGTGAT+GGG | 0.474390 | 3:+83678302 | MsG0380016451.01.T01:CDS |
| TGATTCAAACACTTGCTTCG+AGG | 0.476019 | 3:+83678984 | MsG0380016451.01.T01:CDS |
| TACTCTTCCTAGAGAGAGCC+AGG | 0.477900 | 3:+83679423 | MsG0380016451.01.T01:CDS |
| AGCATATTCTGAATTGGATC+AGG | 0.480387 | 3:-83678485 | None:intergenic |
| CGTCAGGCATGTGATGAAGC+TGG | 0.484030 | 3:-83679228 | None:intergenic |
| TTGCGTGTGAAGGTGAAGAT+AGG | 0.489717 | 3:+83679497 | MsG0380016451.01.T01:CDS |
| TCTCAACATTCATCCTATCC+TGG | 0.491515 | 3:-83679441 | None:intergenic |
| GTTGGAGGACTAAAGATCAT+AGG | 0.492091 | 3:+83679070 | MsG0380016451.01.T01:CDS |
| GTACAACCATGTCATTAATT+GGG | 0.493428 | 3:+83678021 | MsG0380016451.01.T01:CDS |
| AGCGATGCAGATACTGTTCG+AGG | 0.503528 | 3:+83678838 | MsG0380016451.01.T01:CDS |
| ACGAGACCAACTTCTTCGCT+TGG | 0.503960 | 3:+83679273 | MsG0380016451.01.T01:CDS |
| ACATTCATAAAGAAGTTGCT+TGG | 0.509000 | 3:-83678612 | None:intergenic |
| ATCCTATCCTGGCTCTCTCT+AGG | 0.512100 | 3:-83679430 | None:intergenic |
| TCTTTACCAAGCGAAGAAGT+TGG | 0.520115 | 3:-83679279 | None:intergenic |
| TCGCGGGAAAATGGAGAGCT+AGG | 0.521293 | 3:+83679536 | MsG0380016451.01.T01:CDS |
| ACGGATCGCTGCACGGACTC+AGG | 0.523145 | 3:-83679049 | None:intergenic |
| GAGTCCGTGCAGCGATCCGT+TGG | 0.523823 | 3:+83679052 | MsG0380016451.01.T01:CDS |
| GCTGCTAGACGGTCCGAAGA+AGG | 0.532544 | 3:-83678818 | None:intergenic |
| GTCTTCCCAACCAAAATGAA+GGG | 0.534092 | 3:-83679671 | None:intergenic |
| CGAAGCAAGTGTTTGAATCA+GGG | 0.537450 | 3:-83678981 | None:intergenic |
| GTAGAGATGTCAGAACTAGA+TGG | 0.537559 | 3:-83678236 | None:intergenic |
| TCCGTGCAGCGATCCGTTGG+AGG | 0.540174 | 3:+83679055 | MsG0380016451.01.T01:CDS |
| TCCAAAACTTGTAACGGTCG+TGG | 0.541218 | 3:+83679309 | MsG0380016451.01.T01:CDS |
| TTATAGAGCTTTGAAATGCA+AGG | 0.546542 | 3:+83678790 | MsG0380016451.01.T01:CDS |
| TACAAGATAAAGGAGGAAAA+GGG | 0.547340 | 3:+83679646 | MsG0380016451.01.T01:CDS |
| AGAGCTAGGATGACAATGGC+TGG | 0.548519 | 3:+83679550 | MsG0380016451.01.T01:CDS |
| TTTGAATCCAAAACTTGTAA+CGG | 0.552516 | 3:+83679303 | MsG0380016451.01.T01:CDS |
| ACTTGATTGTTGCTTCAGCA+TGG | 0.554425 | 3:+83679698 | MsG0380016451.01.T01:CDS |
| TAGTGACATTGAGGAAGAAG+AGG | 0.556415 | 3:+83678406 | MsG0380016451.01.T01:CDS |
| GAGCAACTAGCAGAAGCACT+TGG | 0.557254 | 3:+83679103 | MsG0380016451.01.T01:CDS |
| CCGGTTAATCTAACATGTGA+TGG | 0.558165 | 3:-83679016 | None:intergenic |
| ACTTGATGATAGTGACATTG+AGG | 0.558721 | 3:+83678397 | MsG0380016451.01.T01:CDS |
| TTTCGGATCAGATTTGGTGA+TGG | 0.559466 | 3:+83678301 | MsG0380016451.01.T01:CDS |
| CATCACATGTTAGATTAACC+GGG | 0.560072 | 3:+83679017 | MsG0380016451.01.T01:CDS |
| ATATGGTAATTCTCAAAGCA+TGG | 0.562265 | 3:+83678430 | MsG0380016451.01.T01:CDS |
| CTCGTAACTCTCGCTCGAGT+AGG | 0.572630 | 3:-83678174 | None:intergenic |
| AATTGCAGCCTACATGGTGG+AGG | 0.577669 | 3:+83678730 | MsG0380016451.01.T01:CDS |
| TAGGCTGCAATTCTTTGGGA+AGG | 0.583102 | 3:-83678719 | None:intergenic |
| TCCTCCAACGGATCGCTGCA+CGG | 0.583327 | 3:-83679056 | None:intergenic |
| CAAAACTAGAAGCATTGGAG+AGG | 0.583413 | 3:+83678369 | MsG0380016451.01.T01:CDS |
| CTACAAGTTTCATGCCAACA+AGG | 0.584293 | 3:+83678255 | MsG0380016451.01.T01:CDS |
| TGTGCTACTGCAATTTCAGA+AGG | 0.584377 | 3:+83678632 | MsG0380016451.01.T01:CDS |
| GCCTGACGAGAGCGTTTCAA+CGG | 0.590858 | 3:+83679243 | MsG0380016451.01.T01:CDS |
| TCCGGATTCAGCGAGGCGAG+CGG | 0.592435 | 3:-83678759 | None:intergenic |
| GTTAATACGGTTGCGTGTGA+AGG | 0.601943 | 3:+83679487 | MsG0380016451.01.T01:CDS |
| AATACTCCTTTGGTGAGTCA+TGG | 0.604923 | 3:-83678520 | None:intergenic |
| CACTAAGCTCAAATCGCCAA+AGG | 0.608012 | 3:+83678076 | MsG0380016451.01.T01:CDS |
| TATGATCTTTAGTCCTCCAA+CGG | 0.609253 | 3:-83679068 | None:intergenic |
| GTATCTGCATCGCTGCTAGA+CGG | 0.609923 | 3:-83678829 | None:intergenic |
| ATTCATAAAGAAGTTGCTTG+GGG | 0.610084 | 3:-83678610 | None:intergenic |
| ATAGAACGGTATGAAGTCGC+GGG | 0.612894 | 3:+83679520 | MsG0380016451.01.T01:CDS |
| TAACTATGCAATAACAGAAG+CGG | 0.616342 | 3:+83678895 | MsG0380016451.01.T01:CDS |
| GATAGAACGGTATGAAGTCG+CGG | 0.616637 | 3:+83679519 | MsG0380016451.01.T01:CDS |
| TCGTCGTGGAGAAGCTCTTG+TGG | 0.619304 | 3:+83679192 | MsG0380016451.01.T01:CDS |
| CCTTTGGTGAGTCATGGTCA+TGG | 0.621918 | 3:-83678514 | None:intergenic |
| AAGGTGAAGATAGGATAGAA+CGG | 0.625100 | 3:+83679506 | MsG0380016451.01.T01:CDS |
| TTCCTAGAGAGAGCCAGGAT+AGG | 0.625909 | 3:+83679428 | MsG0380016451.01.T01:CDS |
| TTATGTGTGAACTGAATGAC+AGG | 0.629144 | 3:+83677999 | None:intergenic |
| GGACTCAGGATCATCAATCC+CGG | 0.632223 | 3:-83679035 | None:intergenic |
| TCGATGCTTGATTGTCGTCG+TGG | 0.642078 | 3:+83679178 | MsG0380016451.01.T01:CDS |
| AGAAGACCCAATTAATGACA+TGG | 0.648943 | 3:-83678027 | None:intergenic |
| AAAACTAGAAGCATTGGAGA+GGG | 0.649054 | 3:+83678370 | MsG0380016451.01.T01:CDS |
| ATTGCAGCCTACATGGTGGA+GGG | 0.650477 | 3:+83678731 | MsG0380016451.01.T01:CDS |
| GGCGAGTCCCTCCACCATGT+AGG | 0.652264 | 3:-83678738 | None:intergenic |
| GCTAGACGGTCCGAAGAAGG+AGG | 0.655079 | 3:-83678815 | None:intergenic |
| TTCATAAAGAAGTTGCTTGG+GGG | 0.656482 | 3:-83678609 | None:intergenic |
| ATGAGAATAAGAAATTTGGG+AGG | 0.658872 | 3:-83678123 | None:intergenic |
| AGGATAGGATGAATGTTGAG+AGG | 0.660140 | 3:+83679443 | MsG0380016451.01.T01:CDS |
| AATTTCAGAAGGAAATGAAG+AGG | 0.662867 | 3:+83678643 | MsG0380016451.01.T01:CDS |
| ATGGAGAGCTAGGATGACAA+TGG | 0.667953 | 3:+83679546 | MsG0380016451.01.T01:CDS |
| CCATGACCATGACTCACCAA+AGG | 0.671972 | 3:+83678514 | MsG0380016451.01.T01:CDS |
| CTTGAATTGAGACAATTCGT+CGG | 0.672967 | 3:-83678691 | None:intergenic |
| AAGAATTGCAGCCTACATGG+TGG | 0.682524 | 3:+83678727 | MsG0380016451.01.T01:CDS |
| AATTTCGAGCGATCTCATCG+AGG | 0.684994 | 3:+83679137 | MsG0380016451.01.T01:CDS |
| TGATAGGTACAAGATAAAGG+AGG | 0.692576 | 3:+83679639 | MsG0380016451.01.T01:CDS |
| ACGACAATCAAGCATCGATG+AGG | 0.692866 | 3:-83679173 | None:intergenic |
| ATAAACCCGAATTTAAAACA+CGG | 0.716869 | 3:-83678866 | None:intergenic |
| TTCATGCCAACAAGGCAACG+TGG | 0.722675 | 3:+83678263 | MsG0380016451.01.T01:CDS |
| TGATTGTTGCTTCAGCATGG+AGG | 0.748962 | 3:+83679701 | MsG0380016451.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGAAATAACGAAAATTTCT+AGG | + | Chr3:83678585-83678604 | MsG0380016451.01.T01:CDS | 20.0% |
| !! | CTTATGAGAATAAGAAATTT+GGG | - | Chr3:83678129-83678148 | None:intergenic | 20.0% |
| !!! | AATTTTCGTTATTTCTTTGT+TGG | - | Chr3:83678582-83678601 | None:intergenic | 20.0% |
| !!! | ATAGATTTTGATATCAATCA+AGG | + | Chr3:83678944-83678963 | MsG0380016451.01.T01:CDS | 20.0% |
| ! | GCTTATGAGAATAAGAAATT+TGG | - | Chr3:83678130-83678149 | None:intergenic | 25.0% |
| ! | TTGATCCTAACATTATTGAT+TGG | + | Chr3:83678456-83678475 | MsG0380016451.01.T01:CDS | 25.0% |
| ! | TTTGAATCCAAAACTTGTAA+CGG | + | Chr3:83679303-83679322 | MsG0380016451.01.T01:CDS | 25.0% |
| !! | ATAAACCCGAATTTAAAACA+CGG | - | Chr3:83678869-83678888 | None:intergenic | 25.0% |
| !! | TGATCCTAACATTATTGATT+GGG | + | Chr3:83678457-83678476 | MsG0380016451.01.T01:CDS | 25.0% |
| !!! | AGCTCTATAAATACTTTTTC+CGG | - | Chr3:83678780-83678799 | None:intergenic | 25.0% |
| !!! | AGTACAACTTAACTTGTTTT+CGG | - | Chr3:83679618-83679637 | None:intergenic | 25.0% |
| AAATTTGGGAGGAAAAATCA+GGG | - | Chr3:83678115-83678134 | None:intergenic | 30.0% | |
| AATTTCAGAAGGAAATGAAG+AGG | + | Chr3:83678643-83678662 | MsG0380016451.01.T01:CDS | 30.0% | |
| ACATTCATAAAGAAGTTGCT+TGG | - | Chr3:83678615-83678634 | None:intergenic | 30.0% | |
| ATATGGTAATTCTCAAAGCA+TGG | + | Chr3:83678430-83678449 | MsG0380016451.01.T01:CDS | 30.0% | |
| ATGAGAATAAGAAATTTGGG+AGG | - | Chr3:83678126-83678145 | None:intergenic | 30.0% | |
| ATTCATAAAGAAGTTGCTTG+GGG | - | Chr3:83678613-83678632 | None:intergenic | 30.0% | |
| CATTCATAAAGAAGTTGCTT+GGG | - | Chr3:83678614-83678633 | None:intergenic | 30.0% | |
| GGCAAGAGATATTGTTAATA+CGG | + | Chr3:83679474-83679493 | MsG0380016451.01.T01:CDS | 30.0% | |
| GTACAACCATGTCATTAATT+GGG | + | Chr3:83678021-83678040 | MsG0380016451.01.T01:CDS | 30.0% | |
| GTGAATTCAATTGAAGTTGA+TGG | + | Chr3:83678335-83678354 | MsG0380016451.01.T01:CDS | 30.0% | |
| TAACTATGCAATAACAGAAG+CGG | + | Chr3:83678895-83678914 | MsG0380016451.01.T01:CDS | 30.0% | |
| TACAAGATAAAGGAGGAAAA+GGG | + | Chr3:83679646-83679665 | MsG0380016451.01.T01:CDS | 30.0% | |
| TCAACAAATCTCTGCAAAAA+CGG | - | Chr3:83679361-83679380 | None:intergenic | 30.0% | |
| ! | AAGTTAAGTTGTACTGTGAT+AGG | + | Chr3:83679623-83679642 | MsG0380016451.01.T01:CDS | 30.0% |
| !! | GTTTGTCCGTGTTTTAAATT+CGG | + | Chr3:83678860-83678879 | MsG0380016451.01.T01:CDS | 30.0% |
| !! | TTATAGAGCTTTGAAATGCA+AGG | + | Chr3:83678790-83678809 | MsG0380016451.01.T01:CDS | 30.0% |
| !! | TTTGTCCGTGTTTTAAATTC+GGG | + | Chr3:83678861-83678880 | MsG0380016451.01.T01:CDS | 30.0% |
| AACAAATCTCTGCAAAAACG+GGG | - | Chr3:83679359-83679378 | None:intergenic | 35.0% | |
| AACAGCAGCATATTCTGAAT+TGG | - | Chr3:83678494-83678513 | None:intergenic | 35.0% | |
| AAGGTGAAGATAGGATAGAA+CGG | + | Chr3:83679506-83679525 | MsG0380016451.01.T01:CDS | 35.0% | |
| AGAAGACCCAATTAATGACA+TGG | - | Chr3:83678030-83678049 | None:intergenic | 35.0% | |
| AGCATATTCTGAATTGGATC+AGG | - | Chr3:83678488-83678507 | None:intergenic | 35.0% | |
| ATGCTGCTAATATTGGAATC+TGG | - | Chr3:83678551-83678570 | None:intergenic | 35.0% | |
| ATTGAGGAAGAAGAGGAATA+TGG | + | Chr3:83678413-83678432 | MsG0380016451.01.T01:CDS | 35.0% | |
| CAACAAATCTCTGCAAAAAC+GGG | - | Chr3:83679360-83679379 | None:intergenic | 35.0% | |
| CATCACATGTTAGATTAACC+GGG | + | Chr3:83679017-83679036 | MsG0380016451.01.T01:CDS | 35.0% | |
| CCATCACATGTTAGATTAAC+CGG | + | Chr3:83679016-83679035 | MsG0380016451.01.T01:CDS | 35.0% | |
| CTGTGATAGGTACAAGATAA+AGG | + | Chr3:83679636-83679655 | MsG0380016451.01.T01:CDS | 35.0% | |
| CTTGAATTGAGACAATTCGT+CGG | - | Chr3:83678694-83678713 | None:intergenic | 35.0% | |
| GAAATTTGGGAGGAAAAATC+AGG | - | Chr3:83678116-83678135 | None:intergenic | 35.0% | |
| GGTACAACCATGTCATTAAT+TGG | + | Chr3:83678020-83678039 | MsG0380016451.01.T01:CDS | 35.0% | |
| GTACAAGATAAAGGAGGAAA+AGG | + | Chr3:83679645-83679664 | MsG0380016451.01.T01:CDS | 35.0% | |
| TATGATCTTTAGTCCTCCAA+CGG | - | Chr3:83679071-83679090 | None:intergenic | 35.0% | |
| TCAGCCCAATCAATAATGTT+AGG | - | Chr3:83678464-83678483 | None:intergenic | 35.0% | |
| TGATAGGTACAAGATAAAGG+AGG | + | Chr3:83679639-83679658 | MsG0380016451.01.T01:CDS | 35.0% | |
| TTCATAAAGAAGTTGCTTGG+GGG | - | Chr3:83678612-83678631 | None:intergenic | 35.0% | |
| ! | ACTTGATGATAGTGACATTG+AGG | + | Chr3:83678397-83678416 | MsG0380016451.01.T01:CDS | 35.0% |
| ! | AGCTTAGTGCTTTTATGTGA+TGG | - | Chr3:83678065-83678084 | None:intergenic | 35.0% |
| ! | GAGATCAAAACTAGAAGCAT+TGG | + | Chr3:83678364-83678383 | MsG0380016451.01.T01:CDS | 35.0% |
| ! | TTAGTGCTTTTATGTGATGG+TGG | - | Chr3:83678062-83678081 | None:intergenic | 35.0% |
| !! | AAAACTAGAAGCATTGGAGA+GGG | + | Chr3:83678370-83678389 | MsG0380016451.01.T01:CDS | 35.0% |
| AATACTCCTTTGGTGAGTCA+TGG | - | Chr3:83678523-83678542 | None:intergenic | 40.0% | |
| AGGATAGGATGAATGTTGAG+AGG | + | Chr3:83679443-83679462 | MsG0380016451.01.T01:CDS | 40.0% | |
| CACCAAATCTGATCCGAAAT+TGG | - | Chr3:83678300-83678319 | None:intergenic | 40.0% | |
| CATGTAGGCTGCAATTCTTT+GGG | - | Chr3:83678726-83678745 | None:intergenic | 40.0% | |
| CCGGTTAATCTAACATGTGA+TGG | - | Chr3:83679019-83679038 | None:intergenic | 40.0% | |
| CGAAGCAAGTGTTTGAATCA+GGG | - | Chr3:83678984-83679003 | None:intergenic | 40.0% | |
| CGACGAATTGTCTCAATTCA+AGG | + | Chr3:83678692-83678711 | MsG0380016451.01.T01:CDS | 40.0% | |
| CTACAAGTTTCATGCCAACA+AGG | + | Chr3:83678255-83678274 | MsG0380016451.01.T01:CDS | 40.0% | |
| GAATGTTGAGAGGCAATGTT+TGG | + | Chr3:83679453-83679472 | MsG0380016451.01.T01:CDS | 40.0% | |
| GCTACTGATGCTGCTAATAT+TGG | - | Chr3:83678558-83678577 | None:intergenic | 40.0% | |
| GTAGAGATGTCAGAACTAGA+TGG | - | Chr3:83678239-83678258 | None:intergenic | 40.0% | |
| GTCCAATTTCGGATCAGATT+TGG | + | Chr3:83678295-83678314 | MsG0380016451.01.T01:CDS | 40.0% | |
| GTCTTCCCAACCAAAATGAA+GGG | - | Chr3:83679674-83679693 | None:intergenic | 40.0% | |
| GTTGGAGGACTAAAGATCAT+AGG | + | Chr3:83679070-83679089 | MsG0380016451.01.T01:CDS | 40.0% | |
| TAGTGACATTGAGGAAGAAG+AGG | + | Chr3:83678406-83678425 | MsG0380016451.01.T01:CDS | 40.0% | |
| TCACTCACATTTGTGCTCAT+TGG | - | Chr3:83679589-83679608 | None:intergenic | 40.0% | |
| TCGAAGCAAGTGTTTGAATC+AGG | - | Chr3:83678985-83679004 | None:intergenic | 40.0% | |
| TCTCAACATTCATCCTATCC+TGG | - | Chr3:83679444-83679463 | None:intergenic | 40.0% | |
| TCTTTACCAAGCGAAGAAGT+TGG | - | Chr3:83679282-83679301 | None:intergenic | 40.0% | |
| TGATTCAAACACTTGCTTCG+AGG | + | Chr3:83678984-83679003 | MsG0380016451.01.T01:CDS | 40.0% | |
| TGTCTTCCCAACCAAAATGA+AGG | - | Chr3:83679675-83679694 | None:intergenic | 40.0% | |
| ! | ACTTGATTGTTGCTTCAGCA+TGG | + | Chr3:83679698-83679717 | MsG0380016451.01.T01:CDS | 40.0% |
| ! | TGTGCTACTGCAATTTCAGA+AGG | + | Chr3:83678632-83678651 | MsG0380016451.01.T01:CDS | 40.0% |
| !! | CAAAACTAGAAGCATTGGAG+AGG | + | Chr3:83678369-83678388 | MsG0380016451.01.T01:CDS | 40.0% |
| !! | GGGTTAACATCGATTTCCTT+TGG | - | Chr3:83678095-83678114 | None:intergenic | 40.0% |
| !! | TTCGGATCAGATTTGGTGAT+GGG | + | Chr3:83678302-83678321 | MsG0380016451.01.T01:CDS | 40.0% |
| !! | TTTCGGATCAGATTTGGTGA+TGG | + | Chr3:83678301-83678320 | MsG0380016451.01.T01:CDS | 40.0% |
| AAATCTCTGCAAAAACGGGG+CGG | - | Chr3:83679356-83679375 | None:intergenic | 45.0% | |
| AAGAATTGCAGCCTACATGG+TGG | + | Chr3:83678727-83678746 | MsG0380016451.01.T01:CDS | 45.0% | |
| AATTTCGAGCGATCTCATCG+AGG | + | Chr3:83679137-83679156 | MsG0380016451.01.T01:CDS | 45.0% | |
| ATAGAACGGTATGAAGTCGC+GGG | + | Chr3:83679520-83679539 | MsG0380016451.01.T01:CDS | 45.0% | |
| ATGCAAGGAACCTCCTTCTT+CGG | + | Chr3:83678805-83678824 | MsG0380016451.01.T01:CDS | 45.0% | |
| ATGGAGAGCTAGGATGACAA+TGG | + | Chr3:83679546-83679565 | MsG0380016451.01.T01:CDS | 45.0% | |
| CACTAAGCTCAAATCGCCAA+AGG | + | Chr3:83678076-83678095 | MsG0380016451.01.T01:CDS | 45.0% | |
| CCAAAGAATTGCAGCCTACA+TGG | + | Chr3:83678724-83678743 | MsG0380016451.01.T01:CDS | 45.0% | |
| CCATGTAGGCTGCAATTCTT+TGG | - | Chr3:83678727-83678746 | None:intergenic | 45.0% | |
| GATAGAACGGTATGAAGTCG+CGG | + | Chr3:83679519-83679538 | MsG0380016451.01.T01:CDS | 45.0% | |
| GTTAATACGGTTGCGTGTGA+AGG | + | Chr3:83679487-83679506 | MsG0380016451.01.T01:CDS | 45.0% | |
| TCCAAAACTTGTAACGGTCG+TGG | + | Chr3:83679309-83679328 | MsG0380016451.01.T01:CDS | 45.0% | |
| TCTGGAGACGAATACTCCTT+TGG | - | Chr3:83678533-83678552 | None:intergenic | 45.0% | |
| TTGCGTGTGAAGGTGAAGAT+AGG | + | Chr3:83679497-83679516 | MsG0380016451.01.T01:CDS | 45.0% | |
| ! | TAGGCTGCAATTCTTTGGGA+AGG | - | Chr3:83678722-83678741 | None:intergenic | 45.0% |
| ! | TCCACGACCGTTACAAGTTT+TGG | - | Chr3:83679313-83679332 | None:intergenic | 45.0% |
| ! | TGATTGTTGCTTCAGCATGG+AGG | + | Chr3:83679701-83679720 | MsG0380016451.01.T01:CDS | 45.0% |
| !! | ACGACAATCAAGCATCGATG+AGG | - | Chr3:83679176-83679195 | None:intergenic | 45.0% |
| !! | GGTGCTGATCAGTCCAATTT+CGG | + | Chr3:83678284-83678303 | MsG0380016451.01.T01:CDS | 45.0% |
| !!! | GAAAAGGGTGCCCTTCATTT+TGG | + | Chr3:83679661-83679680 | MsG0380016451.01.T01:CDS | 45.0% |
| !!! | TACTTTTTCCGGATTCAGCG+AGG | - | Chr3:83678769-83678788 | None:intergenic | 45.0% |
| AATTGCAGCCTACATGGTGG+AGG | + | Chr3:83678730-83678749 | MsG0380016451.01.T01:CDS | 50.0% | |
| ACGAGACCAACTTCTTCGCT+TGG | + | Chr3:83679273-83679292 | MsG0380016451.01.T01:CDS | 50.0% | |
| AGAGCTAGGATGACAATGGC+TGG | + | Chr3:83679550-83679569 | MsG0380016451.01.T01:CDS | 50.0% | |
| AGCGATGCAGATACTGTTCG+AGG | + | Chr3:83678838-83678857 | MsG0380016451.01.T01:CDS | 50.0% | |
| CCATGACCATGACTCACCAA+AGG | + | Chr3:83678514-83678533 | MsG0380016451.01.T01:CDS | 50.0% | |
| CCTTTGGTGAGTCATGGTCA+TGG | - | Chr3:83678517-83678536 | None:intergenic | 50.0% | |
| GGACTCAGGATCATCAATCC+CGG | - | Chr3:83679038-83679057 | None:intergenic | 50.0% | |
| GGTATGAAGTCGCGGGAAAA+TGG | + | Chr3:83679527-83679546 | MsG0380016451.01.T01:CDS | 50.0% | |
| GTATCTGCATCGCTGCTAGA+CGG | - | Chr3:83678832-83678851 | None:intergenic | 50.0% | |
| TACTCTTCCTAGAGAGAGCC+AGG | + | Chr3:83679423-83679442 | MsG0380016451.01.T01:CDS | 50.0% | |
| TCGATGCTTGATTGTCGTCG+TGG | + | Chr3:83679178-83679197 | MsG0380016451.01.T01:CDS | 50.0% | |
| TTCATGCCAACAAGGCAACG+TGG | + | Chr3:83678263-83678282 | MsG0380016451.01.T01:CDS | 50.0% | |
| TTCCTAGAGAGAGCCAGGAT+AGG | + | Chr3:83679428-83679447 | MsG0380016451.01.T01:CDS | 50.0% | |
| ! | ATCCTATCCTGGCTCTCTCT+AGG | - | Chr3:83679433-83679452 | None:intergenic | 50.0% |
| ! | ATTGCAGCCTACATGGTGGA+GGG | + | Chr3:83678731-83678750 | MsG0380016451.01.T01:CDS | 50.0% |
| !! | AGGGTGCCCTTCATTTTGGT+TGG | + | Chr3:83679665-83679684 | MsG0380016451.01.T01:CDS | 50.0% |
| !! | GAGCAACTAGCAGAAGCACT+TGG | + | Chr3:83679103-83679122 | MsG0380016451.01.T01:CDS | 50.0% |
| !!! | GGGTGCCCTTCATTTTGGTT+GGG | + | Chr3:83679666-83679685 | MsG0380016451.01.T01:CDS | 50.0% |
| ACCGTTGAAACGCTCTCGTC+AGG | - | Chr3:83679247-83679266 | None:intergenic | 55.0% | |
| CGTCAGGCATGTGATGAAGC+TGG | - | Chr3:83679231-83679250 | None:intergenic | 55.0% | |
| CTCGTAACTCTCGCTCGAGT+AGG | - | Chr3:83678177-83678196 | None:intergenic | 55.0% | |
| CTGCAAAAACGGGGCGGTAT+TGG | - | Chr3:83679350-83679369 | None:intergenic | 55.0% | |
| TCAGCACCACGTTGCCTTGT+TGG | - | Chr3:83678272-83678291 | None:intergenic | 55.0% | |
| TCGCGGGAAAATGGAGAGCT+AGG | + | Chr3:83679536-83679555 | MsG0380016451.01.T01:CDS | 55.0% | |
| TCGTCGTGGAGAAGCTCTTG+TGG | + | Chr3:83679192-83679211 | MsG0380016451.01.T01:CDS | 55.0% | |
| !! | GCCTGACGAGAGCGTTTCAA+CGG | + | Chr3:83679243-83679262 | MsG0380016451.01.T01:CDS | 55.0% |
| GCTAGACGGTCCGAAGAAGG+AGG | - | Chr3:83678818-83678837 | None:intergenic | 60.0% | |
| GCTGCTAGACGGTCCGAAGA+AGG | - | Chr3:83678821-83678840 | None:intergenic | 60.0% | |
| TCCTCCAACGGATCGCTGCA+CGG | - | Chr3:83679059-83679078 | None:intergenic | 60.0% | |
| ACGGATCGCTGCACGGACTC+AGG | - | Chr3:83679052-83679071 | None:intergenic | 65.0% | |
| GAGTCCGTGCAGCGATCCGT+TGG | + | Chr3:83679052-83679071 | MsG0380016451.01.T01:CDS | 65.0% | |
| GGCGAGTCCCTCCACCATGT+AGG | - | Chr3:83678741-83678760 | None:intergenic | 65.0% | |
| TCCGGATTCAGCGAGGCGAG+CGG | - | Chr3:83678762-83678781 | None:intergenic | 65.0% | |
| TCCGTGCAGCGATCCGTTGG+AGG | + | Chr3:83679055-83679074 | MsG0380016451.01.T01:CDS | 65.0% | |
| GCCGCTCGCCTCGCTGAATC+CGG | + | Chr3:83678758-83678777 | MsG0380016451.01.T01:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 83678014 | 83679726 | 83678014 | ID=MsG0380016451.01;Name=MsG0380016451.01 |
| Chr3 | mRNA | 83678014 | 83679726 | 83678014 | ID=MsG0380016451.01.T01;Parent=MsG0380016451.01;Name=MsG0380016451.01.T01;_AED=0.24;_eAED=0.24;_QI=0|-1|0|1|-1|1|1|0|570 |
| Chr3 | exon | 83678014 | 83679726 | 83678014 | ID=MsG0380016451.01.T01:exon:33320;Parent=MsG0380016451.01.T01 |
| Chr3 | CDS | 83678014 | 83679726 | 83678014 | ID=MsG0380016451.01.T01:cds;Parent=MsG0380016451.01.T01 |
| Gene Sequence |
| Protein sequence |
