AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380016853.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016853.01.T01 MTR_3g096520 96.804 438 14 0 1 438 18 455 0.0 890
MsG0380016853.01.T01 MTR_3g096520 96.804 438 14 0 1 438 1 438 0.0 890
MsG0380016853.01.T01 MTR_3g096520 96.575 438 14 1 1 438 1 437 0.0 884
MsG0380016853.01.T01 MTR_3g086520 60.500 400 134 5 62 437 68 467 9.47e-168 479
MsG0380016853.01.T01 MTR_3g075530 61.436 376 126 3 77 437 64 435 1.07e-167 478
MsG0380016853.01.T01 MTR_3g086520 60.500 400 134 5 62 437 71 470 1.18e-167 479
MsG0380016853.01.T01 MTR_3g086520 60.500 400 134 5 62 437 71 470 1.36e-167 479
MsG0380016853.01.T01 MTR_6g021730 58.690 397 126 3 75 437 94 486 3.29e-167 479
MsG0380016853.01.T01 MTR_7g033100 63.536 362 123 4 85 437 84 445 3.13e-166 475
MsG0380016853.01.T01 MTR_8g089670 59.126 389 143 3 63 437 89 475 9.63e-165 472
MsG0380016853.01.T01 MTR_2g063857 60.615 358 132 2 80 437 67 415 1.36e-157 452
MsG0380016853.01.T01 MTR_6g092020 59.229 363 131 4 80 438 46 395 9.75e-155 444
MsG0380016853.01.T01 MTR_2g063843 59.889 359 129 3 80 438 59 402 1.80e-154 443
MsG0380016853.01.T01 MTR_8g447220 55.961 411 160 5 42 438 3 406 3.36e-152 438
MsG0380016853.01.T01 MTR_7g033100 69.203 276 85 0 85 360 84 359 9.60e-143 414
MsG0380016853.01.T01 MTR_2g063907 60.542 332 119 2 79 410 52 371 1.60e-139 406
MsG0380016853.01.T01 MTR_2g063857 61.688 308 101 3 80 372 67 372 7.34e-134 390
MsG0380016853.01.T01 MTR_6g092100 65.836 281 92 2 83 363 4 280 4.12e-133 385
MsG0380016853.01.T01 MTR_8g447220 60.383 313 113 2 42 343 3 315 3.86e-126 368
MsG0380016853.01.T01 MTR_7g081160 57.377 244 99 3 104 343 10 252 2.39e-87 276
MsG0380016853.01.T01 MTR_7g081170 67.089 158 48 2 137 293 83 237 1.35e-73 231
MsG0380016853.01.T01 MTR_2g063877 51.351 111 41 2 160 270 3 100 1.60e-28 110
MsG0380016853.01.T01 MTR_8g096190 32.121 330 166 16 39 342 279 576 3.32e-22 99.8
MsG0380016853.01.T01 MTR_1g048160 30.375 293 151 12 87 357 319 580 3.26e-20 93.6
MsG0380016853.01.T01 MTR_8g096190 32.432 296 152 14 39 311 279 549 3.60e-20 93.2
MsG0380016853.01.T01 MTR_8g096190 32.472 271 144 12 39 295 279 524 1.17e-19 91.7
MsG0380016853.01.T01 MTR_7g114130 30.627 271 135 11 87 335 323 562 7.06e-19 89.4
MsG0380016853.01.T01 MTR_7g114100 30.797 276 141 11 79 335 149 393 1.13e-18 88.2
MsG0380016853.01.T01 MTR_8g447230 63.636 44 16 0 394 437 511 554 8.02e-15 77.0
MsG0380016853.01.T01 MTR_8g447290 40.698 86 48 1 352 437 427 509 2.45e-14 75.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016853.01.T01 AT5G63970 70.811 370 102 3 72 438 1 367 0.0 552
MsG0380016853.01.T01 AT5G63970 70.811 370 102 3 72 438 1 367 0.0 552
MsG0380016853.01.T01 AT3G01650 61.376 378 134 3 68 437 116 489 3.79e-168 481
MsG0380016853.01.T01 AT3G01650 61.376 378 134 3 68 437 116 489 3.79e-168 481
MsG0380016853.01.T01 AT5G14420 58.961 385 135 2 73 437 87 468 5.42e-164 470
MsG0380016853.01.T01 AT5G14420 58.961 385 135 2 73 437 87 468 5.42e-164 470
MsG0380016853.01.T01 AT5G14420 58.961 385 135 2 73 437 87 468 5.42e-164 470
MsG0380016853.01.T01 AT5G14420 58.961 385 135 2 73 437 87 468 5.42e-164 470
MsG0380016853.01.T01 AT1G67800 55.528 398 158 4 59 437 36 433 2.55e-156 449
MsG0380016853.01.T01 AT1G67800 55.528 398 158 4 59 437 36 433 2.55e-156 449
MsG0380016853.01.T01 AT1G67800 55.528 398 158 4 59 437 36 433 2.55e-156 449
MsG0380016853.01.T01 AT1G67800 55.528 398 158 4 59 437 36 433 2.55e-156 449
MsG0380016853.01.T01 AT1G67800 55.528 398 158 4 59 437 56 453 5.56e-156 449
MsG0380016853.01.T01 AT1G79380 57.474 388 152 3 54 438 24 401 7.05e-156 447
MsG0380016853.01.T01 AT1G67800 61.290 310 112 2 59 360 56 365 5.81e-135 394
MsG0380016853.01.T01 AT1G24545 45.872 109 21 1 123 231 46 116 1.67e-23 97.4
MsG0380016853.01.T01 AT5G61910 30.909 275 130 13 108 359 1109 1346 8.58e-20 93.2
MsG0380016853.01.T01 AT5G61900 30.909 275 130 13 108 359 341 578 2.49e-19 90.9
MsG0380016853.01.T01 AT5G61900 30.909 275 130 13 108 359 341 578 2.49e-19 90.9
MsG0380016853.01.T01 AT5G07300 32.932 249 121 12 108 335 344 567 5.96e-19 89.7
MsG0380016853.01.T01 AT1G08860 30.400 250 126 10 108 335 344 567 3.61e-18 87.4

Find 119 sgRNAs with CRISPR-Local

Find 266 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGCAAATTCTGTTTCCTTCT+TGG 0.060815 3:-88635877 None:intergenic
TTATCCTCTCTCAATTATTT+TGG 0.184417 3:+88635263 MsG0380016853.01.T01:CDS
GCGCGTATTTGACAACTTTC+AGG 0.205094 3:+88635344 MsG0380016853.01.T01:CDS
CAAGGTGACTATCACCTTTC+TGG 0.205885 3:+88632345 MsG0380016853.01.T01:five_prime_UTR
AGCAACTTCAGAGAAAATTT+AGG 0.214808 3:-88636980 None:intergenic
CATCAACCTTCTTCTTATAC+TGG 0.227724 3:+88633271 MsG0380016853.01.T01:CDS
AATCCGAAGGACATGGCTTT+TGG 0.260692 3:+88636299 MsG0380016853.01.T01:CDS
TTCTTCTTATACTGGGAGTT+TGG 0.282403 3:+88633279 MsG0380016853.01.T01:CDS
GCAACTTCAGAGAAAATTTA+GGG 0.284919 3:-88636979 None:intergenic
GATAATCTGATACCATGTTT+TGG 0.290225 3:+88634043 MsG0380016853.01.T01:CDS
ATGGAGATTGCTTGCTCATA+TGG 0.297924 3:-88633989 None:intergenic
CACTTTGACGATAACATTAC+TGG 0.306302 3:+88635321 MsG0380016853.01.T01:CDS
ACCTGTCCACTCATTGCTTT+TGG 0.308835 3:-88633828 None:intergenic
AGACAGAGTCCGGCCAATTA+TGG 0.312266 3:-88634008 None:intergenic
ATTTGCGCTTGCTGCCCTTA+TGG 0.316033 3:+88635893 MsG0380016853.01.T01:CDS
TGCTTTGAGAGAAGCTGGTT+TGG 0.319024 3:+88633772 MsG0380016853.01.T01:CDS
ACTGAACTCCCATCATAATT+AGG 0.320439 3:-88633235 None:intergenic
GAGCAAGCAATCTCCATAAT+TGG 0.320653 3:+88633995 MsG0380016853.01.T01:CDS
TCAATTGCTGCATCAATTAC+AGG 0.330436 3:-88634909 None:intergenic
TCTTCTTATACCGGAAGTTC+GGG 0.334270 3:+88633325 MsG0380016853.01.T01:CDS
CTCTTCTTATACCGGAAGTT+CGG 0.336374 3:+88633324 MsG0380016853.01.T01:CDS
AAGCAGGCTTAGTAGCAATA+TGG 0.340330 3:+88633159 MsG0380016853.01.T01:intron
AGCCGACAATTTCAGCTCAT+TGG 0.359139 3:+88633432 MsG0380016853.01.T01:CDS
GTTAGTATTCCCCGAACTTC+CGG 0.363457 3:-88633335 None:intergenic
CGGAAGAGCCTTCATCATAT+TGG 0.365540 3:+88633953 MsG0380016853.01.T01:CDS
CCTTGTTGATTTGATTTGCT+TGG 0.366947 3:-88632399 None:intergenic
TTAGTTGAATTGTAAAGAAA+TGG 0.367130 3:-88636884 None:intergenic
CTTCGGATTTGTTAGACAAA+TGG 0.368918 3:-88636285 None:intergenic
TTCGGATTTGTTAGACAAAT+GGG 0.372915 3:-88636284 None:intergenic
GAATCTTCAAATTTGATACT+TGG 0.376948 3:+88633794 MsG0380016853.01.T01:CDS
TCGTGATCTATTATTTCCTT+AGG 0.377030 3:-88636084 None:intergenic
ATTGCTTGCTCATATGGATT+AGG 0.378072 3:-88633983 None:intergenic
AATGTACCTTGCAGCAATTA+TGG 0.383001 3:-88635161 None:intergenic
ACGACTATTTATACATCAAT+GGG 0.389954 3:-88636851 None:intergenic
GTTCATTGAGTAAAGTATAT+AGG 0.393095 3:+88636938 MsG0380016853.01.T01:three_prime_UTR
CCATGACAAACTCTATTATC+AGG 0.398725 3:-88634194 None:intergenic
TACGACTATTTATACATCAA+TGG 0.406535 3:-88636852 None:intergenic
GTTTCTGCTTTGAGAGAAGC+TGG 0.409122 3:+88633767 MsG0380016853.01.T01:CDS
CAATTTCAGCTCATTGGATC+AGG 0.420851 3:+88633438 MsG0380016853.01.T01:CDS
GTAATGGTTGCTTGTTCTTG+TGG 0.423780 3:-88635136 None:intergenic
TCTATTATTTCCTTAGGTGG+TGG 0.431746 3:-88636078 None:intergenic
ATTCCACATTTGAAACTGTC+AGG 0.434663 3:+88634251 MsG0380016853.01.T01:CDS
AGCTTTCCATGCGGCGTACC+AGG 0.440711 3:-88635109 None:intergenic
TGTCATTATTGCTGATGGAC+AGG 0.443974 3:+88634968 MsG0380016853.01.T01:CDS
TCTGCACTGGCTGGAGCTGT+TGG 0.447629 3:-88636156 None:intergenic
AGCAGGCTTAGTAGCAATAT+GGG 0.454705 3:+88633160 MsG0380016853.01.T01:intron
CGCCAGGTTACTAGAAATCC+TGG 0.458101 3:+88635091 MsG0380016853.01.T01:intron
CTATTATTTCCTTAGGTGGT+GGG 0.465035 3:-88636077 None:intergenic
TGTGCTGCCCGGTACTGAAA+TGG 0.465356 3:-88635921 None:intergenic
GTTCTTGTCATTATTGCTGA+TGG 0.466502 3:+88634963 MsG0380016853.01.T01:CDS
CAACACCCTCCTAATTATGA+TGG 0.471709 3:+88633226 MsG0380016853.01.T01:CDS
TATCTTTATGCCCTATGTGC+AGG 0.472490 3:+88636751 MsG0380016853.01.T01:CDS
TAATTTGCTGCCTGCACATA+GGG 0.474321 3:-88636761 None:intergenic
TGGAGATTCCATTTCAGTAC+CGG 0.474482 3:+88635913 MsG0380016853.01.T01:CDS
CATCCAAAAGCCATGTCCTT+CGG 0.479435 3:-88636302 None:intergenic
ATCTTCACATGCTACAAGTT+CGG 0.483413 3:+88633369 MsG0380016853.01.T01:CDS
ATAAGAAGAGGGTCGATCAT+AGG 0.486114 3:-88633311 None:intergenic
ATCCAATGAGCTGAAATTGT+CGG 0.486210 3:-88633434 None:intergenic
ATTTCCTTAGGTGGTGGGAG+AGG 0.495075 3:-88636072 None:intergenic
CATCAAAAGTAGACAGAGTC+CGG 0.497235 3:-88634018 None:intergenic
TGATCTATTATTTCCTTAGG+TGG 0.501463 3:-88636081 None:intergenic
TGCAGCAATTATGGAAGTAA+TGG 0.506063 3:-88635152 None:intergenic
CATACTGGTTCTGCACTGGC+TGG 0.522210 3:-88636165 None:intergenic
ATCAACCTTCTTCTTATACT+GGG 0.532895 3:+88633272 MsG0380016853.01.T01:CDS
AAGACCTCTCCCACCACCTA+AGG 0.533866 3:+88636068 MsG0380016853.01.T01:CDS
GATCGACCCTCTTCTTATAC+CGG 0.536895 3:+88633316 MsG0380016853.01.T01:CDS
CAATTGCTGCATCAATTACA+GGG 0.538242 3:-88634908 None:intergenic
ACCAAAAGCAATGAGTGGAC+AGG 0.538547 3:+88633827 MsG0380016853.01.T01:CDS
CTGAAATGGAATCTCCATAA+GGG 0.542289 3:-88635907 None:intergenic
AGAAATCCTGGTACGCCGCA+TGG 0.545259 3:+88635103 MsG0380016853.01.T01:CDS
ATTACAGGGGCAAATGAAGT+TGG 0.548560 3:-88634894 None:intergenic
ACTGAAATGGAATCTCCATA+AGG 0.550689 3:-88635908 None:intergenic
AAACTCCCAGTATAAGAAGA+AGG 0.556963 3:-88633277 None:intergenic
GTAATTTGCTGCCTGCACAT+AGG 0.558684 3:-88636762 None:intergenic
CATCATAATTAGGAGGGTGT+TGG 0.562931 3:-88633225 None:intergenic
TAGGTAAGTATTCGTTCCAT+CGG 0.563326 3:+88633933 MsG0380016853.01.T01:intron
TAGCATGTGAAGATGATTGA+TGG 0.566183 3:-88633360 None:intergenic
GAACTCCCATCATAATTAGG+AGG 0.569731 3:-88633232 None:intergenic
CCTGATAATAGAGTTTGTCA+TGG 0.570822 3:+88634194 MsG0380016853.01.T01:CDS
GAGCCCTTCCAATATGATGA+AGG 0.570882 3:-88633961 None:intergenic
GGAGATTCCATTTCAGTACC+GGG 0.571735 3:+88635914 MsG0380016853.01.T01:CDS
AGAGCCTTCATCATATTGGA+AGG 0.572099 3:+88633957 MsG0380016853.01.T01:CDS
AAGTGCTTCATCTCGTCCCA+TGG 0.572627 3:-88635303 None:intergenic
AAATTGTCGGCTATATATGC+TGG 0.574282 3:-88633421 None:intergenic
AAGCAATCTCCATAATTGGC+CGG 0.575523 3:+88633999 MsG0380016853.01.T01:CDS
GAAACATACTGGTTCTGCAC+TGG 0.575744 3:-88636169 None:intergenic
TCTAACAAATCCGAAGGACA+TGG 0.577510 3:+88636292 MsG0380016853.01.T01:CDS
TATGATGAAGGCTCTTCCGA+TGG 0.578630 3:-88633949 None:intergenic
GAATCGAAATTTGTTATGCG+TGG 0.586429 3:-88636126 None:intergenic
TTGGAGTTGGAGATGGACCA+TGG 0.589444 3:+88635286 MsG0380016853.01.T01:CDS
CGAACTTCCGGTATAAGAAG+AGG 0.593114 3:-88633323 None:intergenic
ATTTCACCAAAAGCAATGAG+TGG 0.597202 3:+88633822 MsG0380016853.01.T01:CDS
AACACCCTCCTAATTATGAT+GGG 0.599452 3:+88633227 MsG0380016853.01.T01:CDS
GAACTTCCGGTATAAGAAGA+GGG 0.603131 3:-88633322 None:intergenic
AACTCCCATCATAATTAGGA+GGG 0.620871 3:-88633231 None:intergenic
ACTTTGACGATAACATTACT+GGG 0.621667 3:+88635322 MsG0380016853.01.T01:CDS
TGATGCAGCAATTGACATTG+TGG 0.622992 3:+88634917 MsG0380016853.01.T01:CDS
TCGGATTTGTTAGACAAATG+GGG 0.624504 3:-88636283 None:intergenic
GACATTGTGGAACGAAACAA+CGG 0.625993 3:+88634930 MsG0380016853.01.T01:CDS
CCATCACCAAACCCAAAACA+TGG 0.626028 3:-88634055 None:intergenic
AAACCTGACAGTTTCAAATG+TGG 0.629100 3:-88634254 None:intergenic
AAAGATCATGTCTGAGAACA+CGG 0.629668 3:+88635848 MsG0380016853.01.T01:CDS
TGGAGTTGGAGATGGACCAT+GGG 0.631244 3:+88635287 MsG0380016853.01.T01:CDS
CTGGTTGCTTGTTATGACGA+TGG 0.637709 3:-88633402 None:intergenic
GTTGCTGCTGAACTCCAGAA+AGG 0.640597 3:-88632359 None:intergenic
TTACTTCCATAATTGCTGCA+AGG 0.643987 3:+88635155 MsG0380016853.01.T01:CDS
CCAACCAAAATAATTGAGAG+AGG 0.646003 3:-88635267 None:intergenic
CCAAGCAAATCAAATCAACA+AGG 0.646842 3:+88632399 MsG0380016853.01.T01:five_prime_UTR
GAGCCTTCATCATATTGGAA+GGG 0.649815 3:+88633958 MsG0380016853.01.T01:CDS
ATGTAGACTTGCAAGGAGTG+TGG 0.650354 3:+88636720 MsG0380016853.01.T01:intron
GACTATTTATACATCAATGG+GGG 0.651903 3:-88636849 None:intergenic
GAACACGGAAGCATCCAAGA+AGG 0.652615 3:+88635863 MsG0380016853.01.T01:CDS
CATTTGTCTAACAAATCCGA+AGG 0.659505 3:+88636286 MsG0380016853.01.T01:CDS
CAACTTCAGAGAAAATTTAG+GGG 0.660131 3:-88636978 None:intergenic
CGACTATTTATACATCAATG+GGG 0.674760 3:-88636850 None:intergenic
CTTCTTATACCGGAAGTTCG+GGG 0.677113 3:+88633326 MsG0380016853.01.T01:CDS
CATGTGAAGATGATTGATGG+TGG 0.687554 3:-88633357 None:intergenic
TGTGGACTAAGCTTTCCATG+CGG 0.719964 3:-88635118 None:intergenic
AATTGCTGCATCAATTACAG+GGG 0.724712 3:-88634907 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATCCTAATATTTATTATT+AGG - Chr3:88634563-88634582 None:intergenic 10.0%
!! TAATCCTAATAATAAATATT+AGG + Chr3:88634556-88634575 MsG0380016853.01.T01:intron 10.0%
!!! ATTTTTTGAAATAATTCTAT+TGG + Chr3:88632446-88632465 MsG0380016853.01.T01:intron 10.0%
!!! TTAAAATTTCATTCTTTTTA+CGG - Chr3:88636469-88636488 None:intergenic 10.0%
!! AAACTACAGAAATTATAAAA+TGG - Chr3:88635817-88635836 None:intergenic 15.0%
!! GCATTATAATTTATTGTATA+CGG + Chr3:88634368-88634387 MsG0380016853.01.T01:intron 15.0%
!! TAAAAAAAAAGAACAAAACA+AGG + Chr3:88632327-88632346 MsG0380016853.01.T01:five_prime_UTR 15.0%
!! TATTTCAAAAAATAAATAGC+TGG - Chr3:88632439-88632458 None:intergenic 15.0%
!!! AAGATTAATTTTCTAAGATA+CGG - Chr3:88635739-88635758 None:intergenic 15.0%
!!! CTTTTTTATTTCTTTCAAAT+AGG + Chr3:88634316-88634335 MsG0380016853.01.T01:intron 15.0%
!!! TACAATAAGTTCATTTTAAA+AGG - Chr3:88633858-88633877 None:intergenic 15.0%
!!! TTGTTTTGTTCTTTTTTTTT+AGG - Chr3:88632328-88632347 None:intergenic 15.0%
!! AAAGTATATAGGAAAAATGA+AGG + Chr3:88636949-88636968 MsG0380016853.01.T01:three_prime_UTR 20.0%
!! AAATATTAGGATTTGATTCT+TGG + Chr3:88634569-88634588 MsG0380016853.01.T01:intron 20.0%
!! ACTTATTGTATATGCATATA+TGG + Chr3:88633868-88633887 MsG0380016853.01.T01:intron 20.0%
!! GTATACTTTATCAATGTAAA+TGG + Chr3:88632996-88633015 MsG0380016853.01.T01:intron 20.0%
!! TTAACATATTCTTGTATTGA+AGG + Chr3:88636256-88636275 MsG0380016853.01.T01:intron 20.0%
!! TTAGTTGAATTGTAAAGAAA+TGG - Chr3:88636887-88636906 None:intergenic 20.0%
!!! AAATATTGTTTTAGTACTTC+TGG - Chr3:88632905-88632924 None:intergenic 20.0%
!!! ATTTGTTGTATAAATGACAA+AGG + Chr3:88635446-88635465 MsG0380016853.01.T01:intron 20.0%
!!! GTTGTGGATTAATAATATAA+TGG + Chr3:88635966-88635985 MsG0380016853.01.T01:intron 20.0%
!!! TAAATAGCTTTTCCAAAAAA+TGG - Chr3:88636427-88636446 None:intergenic 20.0%
!!! TAATTCTATTGGTATGATTT+TGG + Chr3:88632457-88632476 MsG0380016853.01.T01:intron 20.0%
!!! TTCTAGAAAAAACAATAGAA+AGG - Chr3:88635058-88635077 None:intergenic 20.0%
!!! TTTTTTTTTGCTGTTGTTTA+TGG + Chr3:88635201-88635220 MsG0380016853.01.T01:intron 20.0%
! AACAAAAAGGTTAACTTAGA+AGG - Chr3:88634686-88634705 None:intergenic 25.0%
! AATAATTGTCACATAGAAGA+TGG + Chr3:88632855-88632874 MsG0380016853.01.T01:intron 25.0%
! ACGACTATTTATACATCAAT+GGG - Chr3:88636854-88636873 None:intergenic 25.0%
! ATGTGAAGGCTAATTAATAT+TGG - Chr3:88633521-88633540 None:intergenic 25.0%
! GAATCTTCAAATTTGATACT+TGG + Chr3:88633794-88633813 MsG0380016853.01.T01:CDS 25.0%
! GTTCATTGAGTAAAGTATAT+AGG + Chr3:88636938-88636957 MsG0380016853.01.T01:three_prime_UTR 25.0%
! TACGACTATTTATACATCAA+TGG - Chr3:88636855-88636874 None:intergenic 25.0%
! TATGAATTATGCACACAATT+TGG + Chr3:88632540-88632559 MsG0380016853.01.T01:intron 25.0%
! TGAAAATAGAATGGTTCTTT+CGG - Chr3:88636585-88636604 None:intergenic 25.0%
! TGCACATTAATGTTTATGTT+TGG + Chr3:88636639-88636658 MsG0380016853.01.T01:intron 25.0%
! TTATTAATCCACAACTTACT+TGG - Chr3:88635961-88635980 None:intergenic 25.0%
!! AAATTTCATTCTTTTTACGG+TGG - Chr3:88636466-88636485 None:intergenic 25.0%
!! ATAATCTGATACCATGTTTT+GGG + Chr3:88634044-88634063 MsG0380016853.01.T01:CDS 25.0%
!! TATGGTATTTGTCTTTTATG+TGG + Chr3:88635219-88635238 MsG0380016853.01.T01:intron 25.0%
!! TCTAAGTTAACCTTTTTGTT+TGG + Chr3:88634686-88634705 MsG0380016853.01.T01:intron 25.0%
!! TTATCCTCTCTCAATTATTT+TGG + Chr3:88635263-88635282 MsG0380016853.01.T01:CDS 25.0%
!!! AGAACAAACTTGTTTCTAAT+AGG + Chr3:88632582-88632601 MsG0380016853.01.T01:intron 25.0%
!!! CTTTTATGTTGATAATGAAC+TGG - Chr3:88636051-88636070 None:intergenic 25.0%
!!! TGGAAGTGTATTTTCAAAAT+AGG - Chr3:88632960-88632979 None:intergenic 25.0%
!!! TTTTTTTATGTAGACTTGCA+AGG + Chr3:88636713-88636732 MsG0380016853.01.T01:intron 25.0%
AAATATCAAGAGAAAGTCTG+TGG - Chr3:88634739-88634758 None:intergenic 30.0%
AAATGACACCAAAATATGGT+TGG + Chr3:88632668-88632687 MsG0380016853.01.T01:intron 30.0%
AATGTAAGATGCCTTACAAA+TGG + Chr3:88635557-88635576 MsG0380016853.01.T01:intron 30.0%
AATTGTGAGGTAACTTGAAT+TGG + Chr3:88634801-88634820 MsG0380016853.01.T01:intron 30.0%
ACAAGAAACACTAGAATAAC+CGG + Chr3:88633021-88633040 MsG0380016853.01.T01:intron 30.0%
ACTTTGACGATAACATTACT+GGG + Chr3:88635322-88635341 MsG0380016853.01.T01:CDS 30.0%
AGAAAAAACAATAGAAAGGC+AGG - Chr3:88635054-88635073 None:intergenic 30.0%
AGAAGATTTATGACACTTTC+AGG + Chr3:88633742-88633761 MsG0380016853.01.T01:intron 30.0%
AGTCACACTGTGATAATTAT+AGG + Chr3:88633914-88633933 MsG0380016853.01.T01:intron 30.0%
ATACTATGGTTAGATTATGG+AGG + Chr3:88635596-88635615 MsG0380016853.01.T01:intron 30.0%
ATACTTCAGAAAAGACACTA+TGG - Chr3:88632980-88632999 None:intergenic 30.0%
ATAGAGCATATTAGCAGTAA+AGG + Chr3:88633490-88633509 MsG0380016853.01.T01:intron 30.0%
ATCAACCTTCTTCTTATACT+GGG + Chr3:88633272-88633291 MsG0380016853.01.T01:CDS 30.0%
ATGATTATCACAAAACAGCA+TGG - Chr3:88635686-88635705 None:intergenic 30.0%
ATGTAAGATGCCTTACAAAT+GGG + Chr3:88635558-88635577 MsG0380016853.01.T01:intron 30.0%
ATTAGGTAAACCCATTTGTA+AGG - Chr3:88635571-88635590 None:intergenic 30.0%
CCTTTAATATCTCTCTACAA+AGG - Chr3:88635420-88635439 None:intergenic 30.0%
CCTTTGTAGAGAGATATTAA+AGG + Chr3:88635417-88635436 MsG0380016853.01.T01:intron 30.0%
CGACTATTTATACATCAATG+GGG - Chr3:88636853-88636872 None:intergenic 30.0%
CTGATACTATGGTTAGATTA+TGG + Chr3:88635593-88635612 MsG0380016853.01.T01:intron 30.0%
CTGTAAATGACACCAAAATA+TGG + Chr3:88632664-88632683 MsG0380016853.01.T01:intron 30.0%
CTTGTTGACAACTTATTGTT+TGG + Chr3:88634646-88634665 MsG0380016853.01.T01:intron 30.0%
CTTTCAGTAATATGAAGCAA+CGG - Chr3:88633142-88633161 None:intergenic 30.0%
GACTATTTATACATCAATGG+GGG - Chr3:88636852-88636871 None:intergenic 30.0%
GCTATGTTGAATTTGTGATT+AGG + Chr3:88634450-88634469 MsG0380016853.01.T01:intron 30.0%
GTTCTGTATTACTAGATTCA+AGG + Chr3:88635988-88636007 MsG0380016853.01.T01:intron 30.0%
TAACCATAGTATCAGACATT+AGG - Chr3:88635588-88635607 None:intergenic 30.0%
TAGAGAGATATTAAAGGATC+AGG + Chr3:88635423-88635442 MsG0380016853.01.T01:intron 30.0%
TAGAGCATATTAGCAGTAAA+GGG + Chr3:88633491-88633510 MsG0380016853.01.T01:intron 30.0%
TAGTTAAGTCTAACATGTGA+AGG - Chr3:88633700-88633719 None:intergenic 30.0%
TCGTGATCTATTATTTCCTT+AGG - Chr3:88636087-88636106 None:intergenic 30.0%
TGATCTATTATTTCCTTAGG+TGG - Chr3:88636084-88636103 None:intergenic 30.0%
TGTGCAAATAGTAAAACTTG+AGG + Chr3:88636357-88636376 MsG0380016853.01.T01:intron 30.0%
TTACCTAATGTCTGATACTA+TGG + Chr3:88635582-88635601 MsG0380016853.01.T01:intron 30.0%
TTACCTCACAATTCAAGATA+TGG - Chr3:88634794-88634813 None:intergenic 30.0%
TTTGGATGTTGGTACATAAT+AGG + Chr3:88634704-88634723 MsG0380016853.01.T01:intron 30.0%
! AAAGAAAGCACATCATGAAA+TGG - Chr3:88635022-88635041 None:intergenic 30.0%
! AAGAAAGCACATCATGAAAT+GGG - Chr3:88635021-88635040 None:intergenic 30.0%
! AGCATATACCAACCATATTT+TGG - Chr3:88632679-88632698 None:intergenic 30.0%
! CTAATAGGTTTGTTTGACTT+TGG + Chr3:88632597-88632616 MsG0380016853.01.T01:intron 30.0%
! GATAATCTGATACCATGTTT+TGG + Chr3:88634043-88634062 MsG0380016853.01.T01:CDS 30.0%
! GTGAACATTTTGAATGTCAT+TGG + Chr3:88636533-88636552 MsG0380016853.01.T01:intron 30.0%
!! AACTCCCTCATTTTTGTTAT+AGG + Chr3:88634870-88634889 MsG0380016853.01.T01:intron 30.0%
!! ACTCCCTCATTTTTGTTATA+GGG + Chr3:88634871-88634890 MsG0380016853.01.T01:intron 30.0%
!! TAACCTTTTTGTTTGGATGT+TGG + Chr3:88634693-88634712 MsG0380016853.01.T01:intron 30.0%
!! TTCGGATTTGTTAGACAAAT+GGG - Chr3:88636287-88636306 None:intergenic 30.0%
!!! CTTCTTTTTTTACCATCAGT+TGG + Chr3:88632715-88632734 MsG0380016853.01.T01:intron 30.0%
!!! CTTGGTTTTATGATTGATTG+AGG - Chr3:88632384-88632403 None:intergenic 30.0%
!!! TCAATTATTTTGGTTGGAGT+TGG + Chr3:88635273-88635292 MsG0380016853.01.T01:CDS 30.0%
!!! TTTCACTAAGCACCATTTTT+TGG + Chr3:88636412-88636431 MsG0380016853.01.T01:intron 30.0%
AAACCTGACAGTTTCAAATG+TGG - Chr3:88634257-88634276 None:intergenic 35.0%
AAACTCCCAGTATAAGAAGA+AGG - Chr3:88633280-88633299 None:intergenic 35.0%
AAAGATCATGTCTGAGAACA+CGG + Chr3:88635848-88635867 MsG0380016853.01.T01:CDS 35.0%
AAATAGAATGGTTCTTTCGG+TGG - Chr3:88636582-88636601 None:intergenic 35.0%
AACACCCTCCTAATTATGAT+GGG + Chr3:88633227-88633246 MsG0380016853.01.T01:CDS 35.0%
AACTCCCATCATAATTAGGA+GGG - Chr3:88633234-88633253 None:intergenic 35.0%
AATGTACCTTGCAGCAATTA+TGG - Chr3:88635164-88635183 None:intergenic 35.0%
AATTGCTGCATCAATTACAG+GGG - Chr3:88634910-88634929 None:intergenic 35.0%
ACTGAAATGGAATCTCCATA+AGG - Chr3:88635911-88635930 None:intergenic 35.0%
ACTGAACTCCCATCATAATT+AGG - Chr3:88633238-88633257 None:intergenic 35.0%
ACTTATTGATGAACTGCTTC+TGG + Chr3:88632499-88632518 MsG0380016853.01.T01:intron 35.0%
AGAGCATATTAGCAGTAAAG+GGG + Chr3:88633492-88633511 MsG0380016853.01.T01:intron 35.0%
ATCAAAGCTAATCCAACTGA+TGG - Chr3:88632730-88632749 None:intergenic 35.0%
ATCCAATGAGCTGAAATTGT+CGG - Chr3:88633437-88633456 None:intergenic 35.0%
ATCTTCACATGCTACAAGTT+CGG + Chr3:88633369-88633388 MsG0380016853.01.T01:CDS 35.0%
ATTGCTTGCTCATATGGATT+AGG - Chr3:88633986-88634005 None:intergenic 35.0%
ATTTCACCAAAAGCAATGAG+TGG + Chr3:88633822-88633841 MsG0380016853.01.T01:CDS 35.0%
CAATTGCTGCATCAATTACA+GGG - Chr3:88634911-88634930 None:intergenic 35.0%
CACTTTGACGATAACATTAC+TGG + Chr3:88635321-88635340 MsG0380016853.01.T01:CDS 35.0%
CATCAACCTTCTTCTTATAC+TGG + Chr3:88633271-88633290 MsG0380016853.01.T01:CDS 35.0%
CATTTGTCTAACAAATCCGA+AGG + Chr3:88636286-88636305 MsG0380016853.01.T01:CDS 35.0%
CCAACCAAAATAATTGAGAG+AGG - Chr3:88635270-88635289 None:intergenic 35.0%
CCAAGCAAATCAAATCAACA+AGG + Chr3:88632399-88632418 MsG0380016853.01.T01:five_prime_UTR 35.0%
CCATGACAAACTCTATTATC+AGG - Chr3:88634197-88634216 None:intergenic 35.0%
CCTGATAATAGAGTTTGTCA+TGG + Chr3:88634194-88634213 MsG0380016853.01.T01:CDS 35.0%
CTATTATTTCCTTAGGTGGT+GGG - Chr3:88636080-88636099 None:intergenic 35.0%
CTGAAATGGAATCTCCATAA+GGG - Chr3:88635910-88635929 None:intergenic 35.0%
GATGTTGGTACATAATAGGA+TGG + Chr3:88634708-88634727 MsG0380016853.01.T01:intron 35.0%
GTACCAACATCCAAACAAAA+AGG - Chr3:88634699-88634718 None:intergenic 35.0%
GTTCTTGTCATTATTGCTGA+TGG + Chr3:88634963-88634982 MsG0380016853.01.T01:CDS 35.0%
GTTTGTTCTAATGATTACCG+AGG - Chr3:88632571-88632590 None:intergenic 35.0%
TACCATAAACGCAGCAATAT+CGG - Chr3:88635390-88635409 None:intergenic 35.0%
TAGCATGTGAAGATGATTGA+TGG - Chr3:88633363-88633382 None:intergenic 35.0%
TAGGTAAGTATTCGTTCCAT+CGG + Chr3:88633933-88633952 MsG0380016853.01.T01:intron 35.0%
TAGTCAAGTCTAACATGTGA+AGG - Chr3:88633535-88633554 None:intergenic 35.0%
TCAATTGCTGCATCAATTAC+AGG - Chr3:88634912-88634931 None:intergenic 35.0%
TCATAGCAGTAGAAAGATAC+AGG - Chr3:88636205-88636224 None:intergenic 35.0%
TCTATTATTTCCTTAGGTGG+TGG - Chr3:88636081-88636100 None:intergenic 35.0%
TGCAGCAATTATGGAAGTAA+TGG - Chr3:88635155-88635174 None:intergenic 35.0%
TGCTTCATATTACTGAAAGC+AGG + Chr3:88633143-88633162 MsG0380016853.01.T01:intron 35.0%
TGGCCCTATAACAAAAATGA+GGG - Chr3:88634877-88634896 None:intergenic 35.0%
TTAACTTAGAAGGAGAGCTT+TGG - Chr3:88634676-88634695 None:intergenic 35.0%
TTACTTCCATAATTGCTGCA+AGG + Chr3:88635155-88635174 MsG0380016853.01.T01:CDS 35.0%
TTACTTTGTATGTGAGTTGC+TGG + Chr3:88632798-88632817 MsG0380016853.01.T01:intron 35.0%
TTCTTCTTATACTGGGAGTT+TGG + Chr3:88633279-88633298 MsG0380016853.01.T01:CDS 35.0%
TTGCCATATCTTGAATTGTG+AGG + Chr3:88634788-88634807 MsG0380016853.01.T01:intron 35.0%
TTGGCCCTATAACAAAAATG+AGG - Chr3:88634878-88634897 None:intergenic 35.0%
! AAATTGTCGGCTATATATGC+TGG - Chr3:88633424-88633443 None:intergenic 35.0%
! AGAAAGCACATCATGAAATG+GGG - Chr3:88635020-88635039 None:intergenic 35.0%
! ATTCCACATTTGAAACTGTC+AGG + Chr3:88634251-88634270 MsG0380016853.01.T01:CDS 35.0%
! CTGTCTGTCTAGAATAACTA+TGG - Chr3:88634346-88634365 None:intergenic 35.0%
! GTTTTGTGAAACTGTTCTCA+TGG + Chr3:88635495-88635514 MsG0380016853.01.T01:intron 35.0%
! TTTTACGTAACTTTGAGCCT+AGG + Chr3:88634416-88634435 MsG0380016853.01.T01:intron 35.0%
!! CCTTGTTGATTTGATTTGCT+TGG - Chr3:88632402-88632421 None:intergenic 35.0%
!! CTTCGGATTTGTTAGACAAA+TGG - Chr3:88636288-88636307 None:intergenic 35.0%
!! GAATCAGATCCACTTTTACA+TGG - Chr3:88636668-88636687 None:intergenic 35.0%
!! GAATCGAAATTTGTTATGCG+TGG - Chr3:88636129-88636148 None:intergenic 35.0%
!! TAAATTCAGAAGCATCTGCT+TGG - Chr3:88634087-88634106 None:intergenic 35.0%
!! TAGAGTTTGTCATGGTTTTG+AGG + Chr3:88634202-88634221 MsG0380016853.01.T01:CDS 35.0%
!! TCGGATTTGTTAGACAAATG+GGG - Chr3:88636286-88636305 None:intergenic 35.0%
!!! CCTCTCTCAATTATTTTGGT+TGG + Chr3:88635267-88635286 MsG0380016853.01.T01:CDS 35.0%
!!! TTTTCTAAGATACGGAATGC+TGG - Chr3:88635731-88635750 None:intergenic 35.0%
AACAAAAACCAAACCACCAG+AGG - Chr3:88633085-88633104 None:intergenic 40.0%
AAGCAATCTCCATAATTGGC+CGG + Chr3:88633999-88634018 MsG0380016853.01.T01:CDS 40.0%
AAGCAGGCTTAGTAGCAATA+TGG + Chr3:88633159-88633178 MsG0380016853.01.T01:intron 40.0%
AATCGATGCAGCTTGAAAAG+GGG - Chr3:88633642-88633661 None:intergenic 40.0%
ACAACTTGCCAAGTAAGTTG+TGG + Chr3:88635950-88635969 MsG0380016853.01.T01:intron 40.0%
ACAATCGATGCAGCTTGAAA+AGG - Chr3:88633644-88633663 None:intergenic 40.0%
AGAGCCTTCATCATATTGGA+AGG + Chr3:88633957-88633976 MsG0380016853.01.T01:CDS 40.0%
AGCAGGCTTAGTAGCAATAT+GGG + Chr3:88633160-88633179 MsG0380016853.01.T01:intron 40.0%
ATAAGAAGAGGGTCGATCAT+AGG - Chr3:88633314-88633333 None:intergenic 40.0%
ATCCGATATTGCTGCGTTTA+TGG + Chr3:88635385-88635404 MsG0380016853.01.T01:intron 40.0%
ATGGAGATTGCTTGCTCATA+TGG - Chr3:88633992-88634011 None:intergenic 40.0%
ATTACAGGGGCAAATGAAGT+TGG - Chr3:88634897-88634916 None:intergenic 40.0%
CAACACCCTCCTAATTATGA+TGG + Chr3:88633226-88633245 MsG0380016853.01.T01:CDS 40.0%
CAATCGATGCAGCTTGAAAA+GGG - Chr3:88633643-88633662 None:intergenic 40.0%
CAATTTCAGCTCATTGGATC+AGG + Chr3:88633438-88633457 MsG0380016853.01.T01:CDS 40.0%
CATAAACGGGATTTGACACT+CGG - Chr3:88636018-88636037 None:intergenic 40.0%
CATCAAAAGTAGACAGAGTC+CGG - Chr3:88634021-88634040 None:intergenic 40.0%
CATGTGAAGATGATTGATGG+TGG - Chr3:88633360-88633379 None:intergenic 40.0%
CGCAAATTCTGTTTCCTTCT+TGG - Chr3:88635880-88635899 None:intergenic 40.0%
CTCTTCTTATACCGGAAGTT+CGG + Chr3:88633324-88633343 MsG0380016853.01.T01:CDS 40.0%
CTGGTTCACTACTGCATAAA+CGG - Chr3:88636032-88636051 None:intergenic 40.0%
CTTGGATTCTAACAAGCTAC+TGG + Chr3:88634587-88634606 MsG0380016853.01.T01:intron 40.0%
GAACTCCCATCATAATTAGG+AGG - Chr3:88633235-88633254 None:intergenic 40.0%
GAACTTCCGGTATAAGAAGA+GGG - Chr3:88633325-88633344 None:intergenic 40.0%
GACATTGTGGAACGAAACAA+CGG + Chr3:88634930-88634949 MsG0380016853.01.T01:CDS 40.0%
GAGCAAGCAATCTCCATAAT+TGG + Chr3:88633995-88634014 MsG0380016853.01.T01:CDS 40.0%
GAGCCTTCATCATATTGGAA+GGG + Chr3:88633958-88633977 MsG0380016853.01.T01:CDS 40.0%
GAGTTAGCATAGCATCAAAC+AGG - Chr3:88634620-88634639 None:intergenic 40.0%
GTAATGGTTGCTTGTTCTTG+TGG - Chr3:88635139-88635158 None:intergenic 40.0%
GTTAGATTATGGAGGACAGT+GGG + Chr3:88635604-88635623 MsG0380016853.01.T01:intron 40.0%
TAACTTTGAGCCTAGGATTG+AGG + Chr3:88634423-88634442 MsG0380016853.01.T01:intron 40.0%
TATCTTTATGCCCTATGTGC+AGG + Chr3:88636751-88636770 MsG0380016853.01.T01:CDS 40.0%
TCAGTAATATGAAGCAACGG+AGG - Chr3:88633139-88633158 None:intergenic 40.0%
TCTAACAAATCCGAAGGACA+TGG + Chr3:88636292-88636311 MsG0380016853.01.T01:CDS 40.0%
TCTTCTTATACCGGAAGTTC+GGG + Chr3:88633325-88633344 MsG0380016853.01.T01:CDS 40.0%
TGATGCAGCAATTGACATTG+TGG + Chr3:88634917-88634936 MsG0380016853.01.T01:CDS 40.0%
TGATTCAGAGACAGAGACTT+TGG - Chr3:88632257-88632276 None:intergenic 40.0%
TGGAGATTCCATTTCAGTAC+CGG + Chr3:88635913-88635932 MsG0380016853.01.T01:CDS 40.0%
TGGTTCACTACTGCATAAAC+GGG - Chr3:88636031-88636050 None:intergenic 40.0%
TTTGTATGTGAGTTGCTGGA+AGG + Chr3:88632802-88632821 MsG0380016853.01.T01:intron 40.0%
! CATCATAATTAGGAGGGTGT+TGG - Chr3:88633228-88633247 None:intergenic 40.0%
! GAATGTTTTTCTTTTCCGCC+AGG + Chr3:88635075-88635094 MsG0380016853.01.T01:intron 40.0%
! GTTGTATATTTTGTGCTGCC+CGG - Chr3:88635935-88635954 None:intergenic 40.0%
! TGTCATTATTGCTGATGGAC+AGG + Chr3:88634968-88634987 MsG0380016853.01.T01:CDS 40.0%
!! ACGTGTGTGATTTTGATCGA+AGG - Chr3:88636513-88636532 None:intergenic 40.0%
!! TAATTTGCTGCCTGCACATA+GGG - Chr3:88636764-88636783 None:intergenic 40.0%
!! TACCAGGATTTCTAGTAACC+TGG - Chr3:88635096-88635115 None:intergenic 40.0%
!! TCAGATCCACTTTTACATGG+AGG - Chr3:88636665-88636684 None:intergenic 40.0%
!!! ATTTTGGTTGGAGTTGGAGA+TGG + Chr3:88635279-88635298 MsG0380016853.01.T01:CDS 40.0%
!!! CTGATACCATGTTTTGGGTT+TGG + Chr3:88634049-88634068 MsG0380016853.01.T01:CDS 40.0%
ACCAAAAGCAATGAGTGGAC+AGG + Chr3:88633827-88633846 MsG0380016853.01.T01:CDS 45.0%
AGCCGACAATTTCAGCTCAT+TGG + Chr3:88633432-88633451 MsG0380016853.01.T01:CDS 45.0%
ATGTAGACTTGCAAGGAGTG+TGG + Chr3:88636720-88636739 MsG0380016853.01.T01:intron 45.0%
CAAGGTGACTATCACCTTTC+TGG + Chr3:88632345-88632364 MsG0380016853.01.T01:five_prime_UTR 45.0%
CATAGCTCAACCTCAATCCT+AGG - Chr3:88634436-88634455 None:intergenic 45.0%
CATCCAAAAGCCATGTCCTT+CGG - Chr3:88636305-88636324 None:intergenic 45.0%
CCATCACCAAACCCAAAACA+TGG - Chr3:88634058-88634077 None:intergenic 45.0%
CGAACTTCCGGTATAAGAAG+AGG - Chr3:88633326-88633345 None:intergenic 45.0%
CGGAAGAGCCTTCATCATAT+TGG + Chr3:88633953-88633972 MsG0380016853.01.T01:CDS 45.0%
CTTCTTATACCGGAAGTTCG+GGG + Chr3:88633326-88633345 MsG0380016853.01.T01:CDS 45.0%
GAGCCCTTCCAATATGATGA+AGG - Chr3:88633964-88633983 None:intergenic 45.0%
GATCGACCCTCTTCTTATAC+CGG + Chr3:88633316-88633335 MsG0380016853.01.T01:CDS 45.0%
GCGCGTATTTGACAACTTTC+AGG + Chr3:88635344-88635363 MsG0380016853.01.T01:CDS 45.0%
GCGGTTCATCGTAAACAAAC+CGG - Chr3:88633043-88633062 None:intergenic 45.0%
GGAGATTCCATTTCAGTACC+GGG + Chr3:88635914-88635933 MsG0380016853.01.T01:CDS 45.0%
GGTTAGATTATGGAGGACAG+TGG + Chr3:88635603-88635622 MsG0380016853.01.T01:intron 45.0%
GTTAGTATTCCCCGAACTTC+CGG - Chr3:88633338-88633357 None:intergenic 45.0%
GTTTGGCCTCCATGTAAAAG+TGG + Chr3:88636656-88636675 MsG0380016853.01.T01:intron 45.0%
TATGATGAAGGCTCTTCCGA+TGG - Chr3:88633952-88633971 None:intergenic 45.0%
TCAAGAGAAAGTCTGTGGTG+TGG - Chr3:88634734-88634753 None:intergenic 45.0%
! AAGGACATGGCTTTTGGATG+CGG + Chr3:88636305-88636324 MsG0380016853.01.T01:CDS 45.0%
! AATCCGAAGGACATGGCTTT+TGG + Chr3:88636299-88636318 MsG0380016853.01.T01:CDS 45.0%
! ACCTGTCCACTCATTGCTTT+TGG - Chr3:88633831-88633850 None:intergenic 45.0%
! CTTGGCGGGTGAAAATAGAA+TGG - Chr3:88636594-88636613 None:intergenic 45.0%
! TGTGGACTAAGCTTTCCATG+CGG - Chr3:88635121-88635140 None:intergenic 45.0%
! TTCTATTTTCACCCGCCAAG+TGG + Chr3:88636594-88636613 MsG0380016853.01.T01:intron 45.0%
!! CACACAATTTGGTTCTGCCT+CGG + Chr3:88632551-88632570 MsG0380016853.01.T01:intron 45.0%
!! CAGGATTTCTAGTAACCTGG+CGG - Chr3:88635093-88635112 None:intergenic 45.0%
!! CTGGTTGCTTGTTATGACGA+TGG - Chr3:88633405-88633424 None:intergenic 45.0%
!! GAAACATACTGGTTCTGCAC+TGG - Chr3:88636172-88636191 None:intergenic 45.0%
!! GTAATTTGCTGCCTGCACAT+AGG - Chr3:88636765-88636784 None:intergenic 45.0%
!! GTTTCTGCTTTGAGAGAAGC+TGG + Chr3:88633767-88633786 MsG0380016853.01.T01:CDS 45.0%
!! TGCTTTGAGAGAAGCTGGTT+TGG + Chr3:88633772-88633791 MsG0380016853.01.T01:CDS 45.0%
!!! CCATGTTTTGGGTTTGGTGA+TGG + Chr3:88634055-88634074 MsG0380016853.01.T01:CDS 45.0%
AAGTGCTTCATCTCGTCCCA+TGG - Chr3:88635306-88635325 None:intergenic 50.0%
AGACAGAGTCCGGCCAATTA+TGG - Chr3:88634011-88634030 None:intergenic 50.0%
CAAGTGGAATTACCACGCAG+AGG + Chr3:88636610-88636629 MsG0380016853.01.T01:intron 50.0%
CGCCAGGTTACTAGAAATCC+TGG + Chr3:88635091-88635110 MsG0380016853.01.T01:intron 50.0%
CTAGAAAGTGACAACGCGTG+CGG - Chr3:88633062-88633081 None:intergenic 50.0%
CTCTGCGTGGTAATTCCACT+TGG - Chr3:88636612-88636631 None:intergenic 50.0%
GGAGCGACAAGGAAACATAC+TGG - Chr3:88636183-88636202 None:intergenic 50.0%
GTTGCTGCTGAACTCCAGAA+AGG - Chr3:88632362-88632381 None:intergenic 50.0%
TGCGTGGTAATTCCACTTGG+CGG - Chr3:88636609-88636628 None:intergenic 50.0%
TGGAGTTGGAGATGGACCAT+GGG + Chr3:88635287-88635306 MsG0380016853.01.T01:CDS 50.0%
TGTGCATTTGTTCCTCTGCG+TGG - Chr3:88636625-88636644 None:intergenic 50.0%
TTGGAGTTGGAGATGGACCA+TGG + Chr3:88635286-88635305 MsG0380016853.01.T01:CDS 50.0%
! ATTTGCGCTTGCTGCCCTTA+TGG + Chr3:88635893-88635912 MsG0380016853.01.T01:CDS 50.0%
! CTTTCTAGCCTCTGGTGGTT+TGG + Chr3:88633074-88633093 MsG0380016853.01.T01:intron 50.0%
!! ATTTCCTTAGGTGGTGGGAG+AGG - Chr3:88636075-88636094 None:intergenic 50.0%
!! CGTTGTCACTTTCTAGCCTC+TGG + Chr3:88633066-88633085 MsG0380016853.01.T01:intron 50.0%
!! GAACACGGAAGCATCCAAGA+AGG + Chr3:88635863-88635882 MsG0380016853.01.T01:CDS 50.0%
!! TGTCACTTTCTAGCCTCTGG+TGG + Chr3:88633069-88633088 MsG0380016853.01.T01:intron 50.0%
AAGACCTCTCCCACCACCTA+AGG + Chr3:88636068-88636087 MsG0380016853.01.T01:CDS 55.0%
AGAAATCCTGGTACGCCGCA+TGG + Chr3:88635103-88635122 MsG0380016853.01.T01:CDS 55.0%
GCGTGGTAATTCCACTTGGC+GGG - Chr3:88636608-88636627 None:intergenic 55.0%
! TGTGCTGCCCGGTACTGAAA+TGG - Chr3:88635924-88635943 None:intergenic 55.0%
!! CATACTGGTTCTGCACTGGC+TGG - Chr3:88636168-88636187 None:intergenic 55.0%
AGCTTTCCATGCGGCGTACC+AGG - Chr3:88635112-88635131 None:intergenic 60.0%
!! TCTGCACTGGCTGGAGCTGT+TGG - Chr3:88636159-88636178 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr3 gene 88632203 88636992 88632203 ID=MsG0380016853.01;Name=MsG0380016853.01
Chr3 mRNA 88632203 88636992 88632203 ID=MsG0380016853.01.T01;Parent=MsG0380016853.01;Name=MsG0380016853.01.T01;_AED=0.35;_eAED=0.35;_QI=211|1|1|1|0.83|0.76|13|183|438
Chr3 exon 88632203 88632254 88632203 ID=MsG0380016853.01.T01:exon:5632;Parent=MsG0380016853.01.T01
Chr3 exon 88632275 88632420 88632275 ID=MsG0380016853.01.T01:exon:5633;Parent=MsG0380016853.01.T01
Chr3 exon 88633165 88633459 88633165 ID=MsG0380016853.01.T01:exon:5634;Parent=MsG0380016853.01.T01
Chr3 exon 88633764 88633848 88633764 ID=MsG0380016853.01.T01:exon:5635;Parent=MsG0380016853.01.T01
Chr3 exon 88633936 88634076 88633936 ID=MsG0380016853.01.T01:exon:5636;Parent=MsG0380016853.01.T01
Chr3 exon 88634159 88634272 88634159 ID=MsG0380016853.01.T01:exon:5637;Parent=MsG0380016853.01.T01
Chr3 exon 88634892 88634989 88634892 ID=MsG0380016853.01.T01:exon:5638;Parent=MsG0380016853.01.T01
Chr3 exon 88635097 88635176 88635097 ID=MsG0380016853.01.T01:exon:5639;Parent=MsG0380016853.01.T01
Chr3 exon 88635260 88635365 88635260 ID=MsG0380016853.01.T01:exon:5640;Parent=MsG0380016853.01.T01
Chr3 exon 88635834 88635961 88635834 ID=MsG0380016853.01.T01:exon:5641;Parent=MsG0380016853.01.T01
Chr3 exon 88636041 88636182 88636041 ID=MsG0380016853.01.T01:exon:5642;Parent=MsG0380016853.01.T01
Chr3 exon 88636278 88636334 88636278 ID=MsG0380016853.01.T01:exon:5643;Parent=MsG0380016853.01.T01
Chr3 exon 88636726 88636992 88636726 ID=MsG0380016853.01.T01:exon:5644;Parent=MsG0380016853.01.T01
Chr3 five_prime_UTR 88632203 88632254 88632203 ID=MsG0380016853.01.T01:five_prime_utr;Parent=MsG0380016853.01.T01
Chr3 five_prime_UTR 88632275 88632420 88632275 ID=MsG0380016853.01.T01:five_prime_utr;Parent=MsG0380016853.01.T01
Chr3 five_prime_UTR 88633165 88633177 88633165 ID=MsG0380016853.01.T01:five_prime_utr;Parent=MsG0380016853.01.T01
Chr3 CDS 88633178 88633459 88633178 ID=MsG0380016853.01.T01:cds;Parent=MsG0380016853.01.T01
Chr3 CDS 88633764 88633848 88633764 ID=MsG0380016853.01.T01:cds;Parent=MsG0380016853.01.T01
Chr3 CDS 88633936 88634076 88633936 ID=MsG0380016853.01.T01:cds;Parent=MsG0380016853.01.T01
Chr3 CDS 88634159 88634272 88634159 ID=MsG0380016853.01.T01:cds;Parent=MsG0380016853.01.T01
Chr3 CDS 88634892 88634989 88634892 ID=MsG0380016853.01.T01:cds;Parent=MsG0380016853.01.T01
Chr3 CDS 88635097 88635176 88635097 ID=MsG0380016853.01.T01:cds;Parent=MsG0380016853.01.T01
Chr3 CDS 88635260 88635365 88635260 ID=MsG0380016853.01.T01:cds;Parent=MsG0380016853.01.T01
Chr3 CDS 88635834 88635961 88635834 ID=MsG0380016853.01.T01:cds;Parent=MsG0380016853.01.T01
Chr3 CDS 88636041 88636182 88636041 ID=MsG0380016853.01.T01:cds;Parent=MsG0380016853.01.T01
Chr3 CDS 88636278 88636334 88636278 ID=MsG0380016853.01.T01:cds;Parent=MsG0380016853.01.T01
Chr3 CDS 88636726 88636809 88636726 ID=MsG0380016853.01.T01:cds;Parent=MsG0380016853.01.T01
Chr3 three_prime_UTR 88636810 88636992 88636810 ID=MsG0380016853.01.T01:three_prime_utr;Parent=MsG0380016853.01.T01
Gene Sequence

>MsG0380016853.01.T01

ATGGGAAATACAGAATCAATGTCTGAATCTCAACATGAATTTTACTACCAACACCCTCCTAATTATGATGGGAGTTCAGTGAGTAATAGTTATCATCAACCTTCTTCTTATACTGGGAGTTTGGATAGCACTACCTATGATCGACCCTCTTCTTATACCGGAAGTTCGGGGAATACTAACCACCATCAATCATCTTCACATGCTACAAGTTCGGTGAATACTCACCATCGTCATAACAAGCAACCAGCATATATAGCCGACAATTTCAGCTCATTGGATCAGGTTGTTTCTGCTTTGAGAGAAGCTGGTTTGGAATCTTCAAATTTGATACTTGGTATTGATTTCACCAAAAGCAATGAGTGGACAGGTAAGTATTCGTTCCATCGGAAGAGCCTTCATCATATTGGAAGGGCTCCTAATCCATATGAGCAAGCAATCTCCATAATTGGCCGGACTCTGTCTACTTTTGATGAAGATAATCTGATACCATGTTTTGGGTTTGGTGATGCTTCTACACACGATCAGAATGTGTTCAGCTTTTATCCTGATAATAGAGTTTGTCATGGTTTTGAGGAAGTACTTACACGCTATAGACTGATTATTCCACATTTGAAACTGTCAGGGCCAACTTCATTTGCCCCTGTAATTGATGCAGCAATTGACATTGTGGAACGAAACAACGGTCAATATCACGTTCTTGTCATTATTGCTGATGGACAGGTTACTAGAAATCCTGGTACGCCGCATGGAAAGCTTAGTCCACAAGAACAAGCAACCATTACTTCCATAATTGCTGCAAGTCATTATCCTCTCTCAATTATTTTGGTTGGAGTTGGAGATGGACCATGGGACGAGATGAAGCACTTTGACGATAACATTACTGGGCGCGTATTTGACAACTTTCAGTTTGTAAACTTCACAAAGATCATGTCTGAGAACACGGAAGCATCCAAGAAGGAAACAGAATTTGCGCTTGCTGCCCTTATGGAGATTCCATTTCAGTACCGGGCAGCACAAAATATACAACTTGCCAATAGTGAACCAGTTCATTATCAACATAAAAGACCTCTCCCACCACCTAAGGAAATAATAGATCACGATAATGCATTCATAGTGACTCCACGCATAACAAATTTCGATTCAATTGAACCAACAGCTCCAGCCAGTGCAGAACCAGTATGCCCCATTTGTCTAACAAATCCGAAGGACATGGCTTTTGGATGCGGTCATACAACTTGCAAGGAGTGTGGTGCAACATTATCTTTATGCCCTATGTGCAGGCAGCAAATTACTACTCGCTTGAGATTATATACTTGA
Protein sequence

>MsG0380016853.01.T01

MGNTESMSESQHEFYYQHPPNYDGSSVSNSYHQPSSYTGSLDSTTYDRPSSYTGSSGNTNHHQSSSHATSSVNTHHRHNKQPAYIADNFSSLDQVVSALREAGLESSNLILGIDFTKSNEWTGKYSFHRKSLHHIGRAPNPYEQAISIIGRTLSTFDEDNLIPCFGFGDASTHDQNVFSFYPDNRVCHGFEEVLTRYRLIIPHLKLSGPTSFAPVIDAAIDIVERNNGQYHVLVIIADGQVTRNPGTPHGKLSPQEQATITSIIAASHYPLSIILVGVGDGPWDEMKHFDDNITGRVFDNFQFVNFTKIMSENTEASKKETEFALAALMEIPFQYRAAQNIQLANSEPVHYQHKRPLPPPKEIIDHDNAFIVTPRITNFDSIEPTAPASAEPVCPICLTNPKDMAFGCGHTTCKECGATLSLCPMCRQQITTRLRLYT*