AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780038784.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780038784.01.T02 MTR_7g062140 92.420 343 12 2 1 343 1 329 0.0 640
MsG0780038784.01.T02 MTR_4g021815 75.564 266 54 1 78 343 1 255 8.71e-151 424
MsG0780038784.01.T02 MTR_8g010700 31.579 228 129 8 119 336 108 318 8.26e-23 97.4
MsG0780038784.01.T02 MTR_4g115730 26.296 270 154 10 83 342 58 292 5.16e-12 66.2
MsG0780038784.01.T02 MTR_4g115730 26.296 270 154 10 83 342 18 252 1.47e-11 64.3
MsG0780038784.01.T01 MTR_7g062140 92.420 343 12 2 1 343 1 329 0.0 640
MsG0780038784.01.T01 MTR_4g021815 75.564 266 54 1 78 343 1 255 8.71e-151 424
MsG0780038784.01.T01 MTR_8g010700 31.579 228 129 8 119 336 108 318 8.26e-23 97.4
MsG0780038784.01.T01 MTR_4g115730 26.296 270 154 10 83 342 58 292 5.16e-12 66.2
MsG0780038784.01.T01 MTR_4g115730 26.296 270 154 10 83 342 18 252 1.47e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780038784.01.T02 AT2G37660 68.712 326 87 3 18 343 15 325 8.73e-159 447
MsG0780038784.01.T02 AT5G02240 74.131 259 56 1 85 343 6 253 2.50e-139 395
MsG0780038784.01.T02 AT4G31530 31.686 344 198 11 4 336 1 318 4.47e-24 100
MsG0780038784.01.T02 AT4G31530 31.498 327 188 10 4 320 1 301 1.01e-21 94.7
MsG0780038784.01.T02 AT2G34460 30.182 275 141 12 79 339 40 277 1.09e-15 76.6
MsG0780038784.01.T01 AT2G37660 68.712 326 87 3 18 343 15 325 8.73e-159 447
MsG0780038784.01.T01 AT5G02240 74.131 259 56 1 85 343 6 253 2.50e-139 395
MsG0780038784.01.T01 AT4G31530 31.686 344 198 11 4 336 1 318 4.47e-24 100
MsG0780038784.01.T01 AT4G31530 31.498 327 188 10 4 320 1 301 1.01e-21 94.7
MsG0780038784.01.T01 AT2G34460 30.182 275 141 12 79 339 40 277 1.09e-15 76.6

Find 14 sgRNAs with CRISPR-Local

Find 250 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCACCAACAAAGGACTTTA+AGG 0.161530 7:-53038640 MsG0780038784.01.T01:CDS
CCTTCCAAGTATATGTTTAC+TGG 0.240701 7:-53038283 MsG0780038784.01.T01:intron
AGCAAATTTACATTATGTTT+TGG 0.267641 7:-53038501 MsG0780038784.01.T01:three_prime_UTR
TCAATTCAAGGCATTTGATT+TGG 0.316577 7:-53038685 MsG0780038784.01.T01:CDS
GTTTCTCAAGTTTACAGAAC+TGG 0.358357 7:+53038435 None:intergenic
AAAGCCTTAAAGTCCTTTGT+TGG 0.407444 7:+53038636 None:intergenic
GTTGGTGAACCTGTTCCCTC+AGG 0.424555 7:+53038654 None:intergenic
GCATCAAAACCTGAGGGAAC+AGG 0.441936 7:-53038663 MsG0780038784.01.T01:CDS
AACATCTAGATTCATATACT+TGG 0.459217 7:+53038339 None:intergenic
TTTCTCAAGTTTACAGAACT+GGG 0.501547 7:+53038436 None:intergenic
TCTAGATTCATATACTTGGA+AGG 0.592878 7:+53038343 None:intergenic
TGATTTGGCATCAAAACCTG+AGG 0.602928 7:-53038670 MsG0780038784.01.T01:CDS
GGGAACAGGTTCACCAACAA+AGG 0.603238 7:-53038649 MsG0780038784.01.T01:CDS
GATTTGGCATCAAAACCTGA+GGG 0.627143 7:-53038669 MsG0780038784.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TACTAAAATATGAATAAAAA+AGG + Chr7:53040842-53040861 None:intergenic 10.0%
!!! ATTATGATATTTTTATTTCA+AGG - Chr7:53040187-53040206 MsG0780038784.01.T01:CDS 10.0%
!!! TACATTACATTTTAAAATTT+GGG + Chr7:53039591-53039610 None:intergenic 10.0%
!! AATTAAGATTGTTAAAATTG+AGG - Chr7:53039128-53039147 MsG0780038784.01.T01:CDS 15.0%
!! ATGATACTATCTTAAAATTT+AGG + Chr7:53039381-53039400 None:intergenic 15.0%
!! TTAAAAAAAAAAAAACGTCA+AGG - Chr7:53039694-53039713 MsG0780038784.01.T01:intron 15.0%
!! TTAAAATTATTTATGAAGCA+CGG - Chr7:53038923-53038942 MsG0780038784.01.T01:intron 15.0%
!! TTTATAAAAAGTTAAAAGAG+CGG - Chr7:53040357-53040376 MsG0780038784.01.T01:intron 15.0%
!!! AGTAATATGAGTTTTAATTA+AGG - Chr7:53038881-53038900 MsG0780038784.01.T01:intron 15.0%
!!! CAAATTTTAAAATGTAATGT+AGG - Chr7:53039590-53039609 MsG0780038784.01.T01:intron 15.0%
!!! CTACATTACATTTTAAAATT+TGG + Chr7:53039592-53039611 None:intergenic 15.0%
!!! TAACATCATTGTTATTATTA+AGG + Chr7:53038406-53038425 None:intergenic 15.0%
!!! TTAAAATTGAGGTTTAATTT+AGG - Chr7:53039139-53039158 MsG0780038784.01.T01:CDS 15.0%
!!! TTTGAATTTAGTTTATAAGT+AGG - Chr7:53039999-53040018 MsG0780038784.01.T01:CDS 15.0%
!!! TTTTAGTAATTTTGTTTACT+AGG - Chr7:53040854-53040873 MsG0780038784.01.T01:intron 15.0%
!! AAAATTAAGATTTCTGACTT+GGG - Chr7:53039183-53039202 MsG0780038784.01.T01:intron 20.0%
!! AAATATAGGAATATAAATGC+AGG - Chr7:53038840-53038859 MsG0780038784.01.T01:intron 20.0%
!! AATATAGGAATATAAATGCA+GGG - Chr7:53038841-53038860 MsG0780038784.01.T01:intron 20.0%
!! CTTCAACTTTATAATATAGA+TGG + Chr7:53040235-53040254 None:intergenic 20.0%
!! GTTAGAAAATGAGTTTATAA+TGG - Chr7:53039514-53039533 MsG0780038784.01.T01:CDS 20.0%
!! TAAAATTAAGATTTCTGACT+TGG - Chr7:53039182-53039201 MsG0780038784.01.T01:intron 20.0%
!! TAAGCAACAATATAAGAAAA+TGG + Chr7:53041767-53041786 None:intergenic 20.0%
!! TACATATTCAATATAATGCT+GGG + Chr7:53039106-53039125 None:intergenic 20.0%
!! TACTATCTTAAAATTTAGGT+TGG + Chr7:53039377-53039396 None:intergenic 20.0%
!! TAGCAGTAAATTTACAAAAT+TGG - Chr7:53039872-53039891 MsG0780038784.01.T01:intron 20.0%
!! TGTTAAACAAATTGAATCAA+GGG + Chr7:53041808-53041827 None:intergenic 20.0%
!! TTACATATTCAATATAATGC+TGG + Chr7:53039107-53039126 None:intergenic 20.0%
!!! AAAATTTCTGATTTTTTGTG+TGG - Chr7:53039236-53039255 MsG0780038784.01.T01:intron 20.0%
!!! AAATTTCTGATTTTTTGTGT+GGG - Chr7:53039237-53039256 MsG0780038784.01.T01:intron 20.0%
!!! AATTGTTTTCATAAGTTTTC+CGG - Chr7:53040650-53040669 MsG0780038784.01.T01:intron 20.0%
!!! AGCAAATTTACATTATGTTT+TGG - Chr7:53042033-53042052 MsG0780038784.01.T01:CDS 20.0%
!!! TTTAATTTAGGTTTAGTGAA+TGG - Chr7:53039151-53039170 MsG0780038784.01.T01:intron 20.0%
!!! TTTATTGTTGTTTCTGATTA+TGG + Chr7:53038321-53038340 None:intergenic 20.0%
! AACATCTAGATTCATATACT+TGG + Chr7:53042198-53042217 None:intergenic 25.0%
! ACTGAAATGTGTGAAAATAT+AGG - Chr7:53038826-53038845 MsG0780038784.01.T01:intron 25.0%
! CATGAAAATGAGTTTATAGT+GGG - Chr7:53039317-53039336 MsG0780038784.01.T01:CDS 25.0%
! CTATAACAATGTTATATTGC+TGG + Chr7:53041695-53041714 None:intergenic 25.0%
! CTGACTCAATTTAGAAAAAT+GGG + Chr7:53041370-53041389 None:intergenic 25.0%
! CTGTTAAACAAATTGAATCA+AGG + Chr7:53041809-53041828 None:intergenic 25.0%
! CTTATGGAAAATGTATTATG+CGG + Chr7:53040795-53040814 None:intergenic 25.0%
! GGAAAACTTATGAAAACAAT+TGG + Chr7:53040651-53040670 None:intergenic 25.0%
! GTCTCATATTAGATAAAATC+AGG - Chr7:53039492-53039511 MsG0780038784.01.T01:CDS 25.0%
! TGATGAAAAATTGTTCAAAC+CGG + Chr7:53040032-53040051 None:intergenic 25.0%
! TTATGAGAAAAATGCATGTT+TGG - Chr7:53041151-53041170 MsG0780038784.01.T01:intron 25.0%
! TTCAGTGTAATTATATGTGT+CGG - Chr7:53039022-53039041 MsG0780038784.01.T01:intron 25.0%
!! AAAAAAAAACGTCAAGGTTT+TGG - Chr7:53039700-53039719 MsG0780038784.01.T01:intron 25.0%
!! AAAAGATCTTTTACTATGCA+AGG - Chr7:53039537-53039556 MsG0780038784.01.T01:intron 25.0%
!! AAATTAAGATTTCTGACTTG+GGG - Chr7:53039184-53039203 MsG0780038784.01.T01:intron 25.0%
!! AACTACTTTGATGGTTATTA+TGG - Chr7:53038433-53038452 MsG0780038784.01.T01:intron 25.0%
!! ATTGTTTTCATAAGTTTTCC+GGG - Chr7:53040651-53040670 MsG0780038784.01.T01:intron 25.0%
!! CATTTTTCTAAATTGAGTCA+GGG - Chr7:53041369-53041388 MsG0780038784.01.T01:intron 25.0%
!! CTTGATTCAATTTGTTTAAC+AGG - Chr7:53041807-53041826 MsG0780038784.01.T01:intron 25.0%
!! TGTTTCGTTCTACAAAATTT+TGG - Chr7:53041120-53041139 MsG0780038784.01.T01:intron 25.0%
!! TTATCAGTAGTGTATTTTCT+AGG + Chr7:53042300-53042319 None:intergenic 25.0%
!!! AAGCACTAATAGTTGTTTTA+TGG + Chr7:53042008-53042027 None:intergenic 25.0%
!!! ACATTTTAAAATTTGGGTTG+AGG + Chr7:53039585-53039604 None:intergenic 25.0%
!!! GTATGATTCCTACTTTTATT+TGG - Chr7:53041299-53041318 MsG0780038784.01.T01:intron 25.0%
!!! TACGAAGTTTTGTCAAATAA+TGG + Chr7:53041619-53041638 None:intergenic 25.0%
AAAGGTTGGATCATATAATC+GGG - Chr7:53040076-53040095 MsG0780038784.01.T01:CDS 30.0%
ACCATCTTCAAAATAGAACT+CGG + Chr7:53040585-53040604 None:intergenic 30.0%
ATAAGAATCTACACTTACAG+AGG - Chr7:53039942-53039961 MsG0780038784.01.T01:CDS 30.0%
ATGAATCATAACCTACCTTT+CGG + Chr7:53040126-53040145 None:intergenic 30.0%
ATGCCATAAATATTCTTTGG+TGG - Chr7:53038508-53038527 MsG0780038784.01.T01:three_prime_UTR 30.0%
ATTGTAGGTTTGGAAAAGAA+AGG - Chr7:53041197-53041216 MsG0780038784.01.T01:intron 30.0%
CAAACCAGTAAACATATACT+TGG + Chr7:53042258-53042277 None:intergenic 30.0%
CAAAGGTTGGATCATATAAT+CGG - Chr7:53040075-53040094 MsG0780038784.01.T01:CDS 30.0%
CAGAAAAATCAAATAGATGC+TGG - Chr7:53040891-53040910 MsG0780038784.01.T01:intron 30.0%
CAGTTTCTTATGCATCATTA+AGG - Chr7:53038549-53038568 MsG0780038784.01.T01:three_prime_UTR 30.0%
CCAAAGAATATTTATGGCAT+TGG + Chr7:53038508-53038527 None:intergenic 30.0%
CCAATGCCATAAATATTCTT+TGG - Chr7:53038505-53038524 MsG0780038784.01.T01:three_prime_UTR 30.0%
CCTGACTCAATTTAGAAAAA+TGG + Chr7:53041371-53041390 None:intergenic 30.0%
CTTAATGATGCATAAGAAAC+TGG + Chr7:53038551-53038570 None:intergenic 30.0%
GAAGAAAGATTCATAGAATG+TGG + Chr7:53040156-53040175 None:intergenic 30.0%
GATCTATGATTATGTCGAAA+AGG + Chr7:53040929-53040948 None:intergenic 30.0%
GCAACAATATAAGAAAATGG+TGG + Chr7:53041764-53041783 None:intergenic 30.0%
GCATGAAAATGAGTTTATAG+TGG - Chr7:53039316-53039335 MsG0780038784.01.T01:CDS 30.0%
GCTTCCTAAAACAAAAACTT+AGG - Chr7:53039637-53039656 MsG0780038784.01.T01:intron 30.0%
GTAAACTTAAGCATGACTTA+TGG + Chr7:53040811-53040830 None:intergenic 30.0%
GTATTCCGTATACGATTATA+AGG - Chr7:53041244-53041263 MsG0780038784.01.T01:intron 30.0%
GTGTACCTTATAATCGTATA+CGG + Chr7:53041252-53041271 None:intergenic 30.0%
GTTAGATGCCAAATAAAAGT+AGG + Chr7:53041310-53041329 None:intergenic 30.0%
GTTAGTGTAGCACTAAAATA+GGG + Chr7:53038284-53038303 None:intergenic 30.0%
TAAGATTCTCACATGAGATT+AGG - Chr7:53039294-53039313 MsG0780038784.01.T01:CDS 30.0%
TATACGATTATAAGGTACAC+CGG - Chr7:53041252-53041271 MsG0780038784.01.T01:intron 30.0%
TCATTAACAACAAATGCAGT+CGG + Chr7:53039818-53039837 None:intergenic 30.0%
TCTAGATTCATATACTTGGA+AGG + Chr7:53042194-53042213 None:intergenic 30.0%
TGTTAGTGTAGCACTAAAAT+AGG + Chr7:53038285-53038304 None:intergenic 30.0%
TTGCCACCAAAGAATATTTA+TGG + Chr7:53038514-53038533 None:intergenic 30.0%
TTGTTCAGTGTAATAGAAAC+CGG + Chr7:53041274-53041293 None:intergenic 30.0%
TTTATAAGTAGGATTCAGAC+CGG - Chr7:53040010-53040029 MsG0780038784.01.T01:CDS 30.0%
TTTCTCAAGTTTACAGAACT+GGG + Chr7:53042101-53042120 None:intergenic 30.0%
! AGAGAGAGAGAAAGAATTTT+TGG - Chr7:53038756-53038775 MsG0780038784.01.T01:intron 30.0%
! ATAAATATTCTTTGGTGGCA+AGG - Chr7:53038513-53038532 MsG0780038784.01.T01:three_prime_UTR 30.0%
! TAAAGCAAATTGTGTTGGTA+GGG - Chr7:53041022-53041041 MsG0780038784.01.T01:intron 30.0%
! TCAATTCAAGGCATTTGATT+TGG - Chr7:53041849-53041868 MsG0780038784.01.T01:CDS 30.0%
! TGTTGCTTAACTATGTGATT+TGG - Chr7:53041778-53041797 MsG0780038784.01.T01:intron 30.0%
! TTAACAGGCACTAAATTTTG+AGG - Chr7:53041822-53041841 MsG0780038784.01.T01:intron 30.0%
! TTTAATTGCTGTTACTTCTC+AGG - Chr7:53040326-53040345 MsG0780038784.01.T01:intron 30.0%
!! AAAATGGTGGAATTGTGTTT+TGG + Chr7:53041751-53041770 None:intergenic 30.0%
!! AATTAAGATTTCTGACTTGG+GGG - Chr7:53039185-53039204 MsG0780038784.01.T01:intron 30.0%
!! ACTTTTATTTGGCATCTAAC+TGG - Chr7:53041310-53041329 MsG0780038784.01.T01:intron 30.0%
!! ATTTTGTTTACTAGGTTGAC+TGG - Chr7:53040862-53040881 MsG0780038784.01.T01:intron 30.0%
!! CCATTTTTCTAAATTGAGTC+AGG - Chr7:53041368-53041387 MsG0780038784.01.T01:intron 30.0%
!! GAATATTTATGGCATTGGTT+AGG + Chr7:53038503-53038522 None:intergenic 30.0%
!! TTCTTGCTATTCTACTTCTT+TGG - Chr7:53038577-53038596 MsG0780038784.01.T01:three_prime_UTR 30.0%
!! TTTCGTATTGATTGTAGGTT+TGG - Chr7:53041187-53041206 MsG0780038784.01.T01:intron 30.0%
!!! GTTGTTTTCGTATTGATTGT+AGG - Chr7:53041182-53041201 MsG0780038784.01.T01:intron 30.0%
!!! GTTTTTGGTTGCAATAAAGA+AGG - Chr7:53039964-53039983 MsG0780038784.01.T01:CDS 30.0%
!!! TACGCCTAAGTTTTTGTTTT+AGG + Chr7:53039644-53039663 None:intergenic 30.0%
AAAGCCTTAAAGTCCTTTGT+TGG + Chr7:53041901-53041920 None:intergenic 35.0%
AAATGTATTATGCGGCTGTT+TGG + Chr7:53040787-53040806 None:intergenic 35.0%
AACCATCCTTTGAACAGTTT+GGG - Chr7:53041066-53041085 MsG0780038784.01.T01:intron 35.0%
AACTGTTCAAAGGATGGTTA+AGG + Chr7:53041065-53041084 None:intergenic 35.0%
AAGAAAGGCTGAACAATATC+TGG - Chr7:53041212-53041231 MsG0780038784.01.T01:intron 35.0%
AATGTGGTAGCAGAAACAAA+AGG + Chr7:53038476-53038495 None:intergenic 35.0%
AGGAGTAAAGCAAATTGTGT+TGG - Chr7:53041017-53041036 MsG0780038784.01.T01:intron 35.0%
ATCAAAAACGAGTAGTGATC+TGG + Chr7:53041930-53041949 None:intergenic 35.0%
ATCTGTGTAGTTTCAAAGGT+TGG - Chr7:53040062-53040081 MsG0780038784.01.T01:CDS 35.0%
CAAGATCTGTGTAGTTTCAA+AGG - Chr7:53040058-53040077 MsG0780038784.01.T01:CDS 35.0%
CAGTAGCATACATTTCCAAT+TGG + Chr7:53039920-53039939 None:intergenic 35.0%
CCAGTAAACATATACTTGGA+AGG + Chr7:53042254-53042273 None:intergenic 35.0%
CCATCTTCAAAATAGAACTC+GGG + Chr7:53040584-53040603 None:intergenic 35.0%
CCTTCCAAGTATATGTTTAC+TGG - Chr7:53042251-53042270 MsG0780038784.01.T01:five_prime_UTR 35.0%
GAAGAAAGCAAGCAGAAAAT+TGG - Chr7:53040416-53040435 MsG0780038784.01.T01:intron 35.0%
GTTTCTCAAGTTTACAGAAC+TGG + Chr7:53042102-53042121 None:intergenic 35.0%
TAACCATCCTTTGAACAGTT+TGG - Chr7:53041065-53041084 MsG0780038784.01.T01:intron 35.0%
TACTGTGTGAACTACTTTGA+TGG - Chr7:53038424-53038443 MsG0780038784.01.T01:intron 35.0%
TAGCATACATTTCCAATTGG+AGG + Chr7:53039917-53039936 None:intergenic 35.0%
TCAAAAACGAGTAGTGATCT+GGG + Chr7:53041929-53041948 None:intergenic 35.0%
TCAAATCCAGGTTTCATTAG+TGG + Chr7:53040542-53040561 None:intergenic 35.0%
TGAATCATAACCTACCTTTC+GGG + Chr7:53040125-53040144 None:intergenic 35.0%
TGTTAGACACCACACAAAAT+CGG + Chr7:53039057-53039076 None:intergenic 35.0%
TTCACCAACAAAGGACTTTA+AGG - Chr7:53041894-53041913 MsG0780038784.01.T01:CDS 35.0%
TTCTTAGTAACTTACCCGAA+AGG - Chr7:53040108-53040127 MsG0780038784.01.T01:CDS 35.0%
TTGGTTTAGTACTCAGCTTT+CGG - Chr7:53039891-53039910 MsG0780038784.01.T01:intron 35.0%
TTTATGTACATGAACAGCCA+AGG - Chr7:53040990-53041009 MsG0780038784.01.T01:intron 35.0%
! AAGTGTTGTTGTTGTTGCTA+TGG - Chr7:53038655-53038674 MsG0780038784.01.T01:CDS 35.0%
! ACTATGCAAGGTGATTTTGT+TGG - Chr7:53039549-53039568 MsG0780038784.01.T01:intron 35.0%
! CTATGCAAGGTGATTTTGTT+GGG - Chr7:53039550-53039569 MsG0780038784.01.T01:intron 35.0%
! GAAAATGAGTTTATAGTGGG+AGG - Chr7:53039320-53039339 MsG0780038784.01.T01:CDS 35.0%
! GTAAAGCAAATTGTGTTGGT+AGG - Chr7:53041021-53041040 MsG0780038784.01.T01:intron 35.0%
! GTAATTATATGTGTCGGTGT+CGG - Chr7:53039028-53039047 MsG0780038784.01.T01:intron 35.0%
! TAGATGCTATTTGACAAACC+TGG - Chr7:53041712-53041731 MsG0780038784.01.T01:intron 35.0%
! TCTACACTTACAGAGGTTTT+TGG - Chr7:53039949-53039968 MsG0780038784.01.T01:CDS 35.0%
!! ATTAAGATTTCTGACTTGGG+GGG - Chr7:53039186-53039205 MsG0780038784.01.T01:intron 35.0%
!! CTTTGAAACTACACAGATCT+TGG + Chr7:53040060-53040079 None:intergenic 35.0%
!! GCATTGGTTAGGAAAAAATG+TGG + Chr7:53038492-53038511 None:intergenic 35.0%
!! GCTGCAGATGATGTTTTTAT+CGG - Chr7:53040440-53040459 MsG0780038784.01.T01:intron 35.0%
!! TCATGCTCTAGATGTTTTCT+CGG - Chr7:53039448-53039467 MsG0780038784.01.T01:intron 35.0%
!! TTTGGGTGATGGGAATATAT+TGG - Chr7:53041083-53041102 MsG0780038784.01.T01:intron 35.0%
!!! CAAGGTTTTGGATATCTTTG+TGG - Chr7:53039712-53039731 MsG0780038784.01.T01:intron 35.0%
AACAGTCACAAGTGCTTATG+TGG - Chr7:53040742-53040761 MsG0780038784.01.T01:intron 40.0%
AATTGCAGGAGCAAGACTTT+CGG + Chr7:53040480-53040499 None:intergenic 40.0%
AGACGAACGATGTAAATGCA+GGG - Chr7:53039669-53039688 MsG0780038784.01.T01:intron 40.0%
AGCCTAATAGTACCTGTTCA+GGG + Chr7:53040613-53040632 None:intergenic 40.0%
AGGTACTATTAGGCTCTGTT+TGG - Chr7:53040618-53040637 MsG0780038784.01.T01:intron 40.0%
ATACAGACTTCTGCAACATC+AGG + Chr7:53041490-53041509 None:intergenic 40.0%
CTAATTTCGATAAGCTCTCC+CGG + Chr7:53040672-53040691 None:intergenic 40.0%
CTTTGAACAGTTTGGGTGAT+GGG - Chr7:53041073-53041092 MsG0780038784.01.T01:intron 40.0%
GATTTGGCATCAAAACCTGA+GGG - Chr7:53041865-53041884 MsG0780038784.01.T01:CDS 40.0%
GCAGGGTTTGTAGACTTTAT+TGG - Chr7:53038858-53038877 MsG0780038784.01.T01:intron 40.0%
GCATCTATACCTTGAATTGC+AGG + Chr7:53040494-53040513 None:intergenic 40.0%
GCTCTCATAATCCTTACAAG+TGG - Chr7:53040512-53040531 MsG0780038784.01.T01:intron 40.0%
GGCTCAAAAAATTCTACGTC+TGG - Chr7:53040208-53040227 MsG0780038784.01.T01:intron 40.0%
TACCCTGAACAGGTACTATT+AGG - Chr7:53040608-53040627 MsG0780038784.01.T01:intron 40.0%
TAGTAACTTACCCGAAAGGT+AGG - Chr7:53040112-53040131 MsG0780038784.01.T01:CDS 40.0%
TAGTGCTACACTAACATCAG+AGG - Chr7:53038289-53038308 MsG0780038784.01.T01:intron 40.0%
TGGTTTCACTTGCATTACCA+AGG - Chr7:53038597-53038616 MsG0780038784.01.T01:exon 40.0%
TGTTGCAGAAGTCTGTATTC+AGG - Chr7:53041492-53041511 MsG0780038784.01.T01:intron 40.0%
TTAGTGGTACTCCACTTGTA+AGG + Chr7:53040526-53040545 None:intergenic 40.0%
TTTCTAAATTGAGTCAGGGC+TGG - Chr7:53041373-53041392 MsG0780038784.01.T01:intron 40.0%
TTTGGTAGAGATAAAGAGCC+AGG + Chr7:53041733-53041752 None:intergenic 40.0%
! AATTGTGTTGGTAGGGTCTA+TGG - Chr7:53041029-53041048 MsG0780038784.01.T01:intron 40.0%
! ATTGTGTTGGTAGGGTCTAT+GGG - Chr7:53041030-53041049 MsG0780038784.01.T01:intron 40.0%
! GGTAATTAGCGGTTTGTTCA+AGG - Chr7:53041583-53041602 MsG0780038784.01.T01:intron 40.0%
! GTTTACTAGGTTGACTGGAT+CGG - Chr7:53040867-53040886 MsG0780038784.01.T01:intron 40.0%
! TGATTTGGCATCAAAACCTG+AGG - Chr7:53041864-53041883 MsG0780038784.01.T01:CDS 40.0%
! TGCATTACCAAGGAGTTTTG+AGG - Chr7:53038607-53038626 MsG0780038784.01.T01:exon 40.0%
! TTATAGTGGGAGGAATGTCT+CGG - Chr7:53039330-53039349 MsG0780038784.01.T01:CDS 40.0%
! TTTTGTGTGGTGTCTAACAC+AGG - Chr7:53039058-53039077 MsG0780038784.01.T01:CDS 40.0%
!! AAGAGTACTGTGCTTGTTAC+TGG - Chr7:53038689-53038708 MsG0780038784.01.T01:CDS 40.0%
!! ACAGGCACTAAATTTTGAGG+AGG - Chr7:53041825-53041844 MsG0780038784.01.T01:intron 40.0%
!! CATGCTCTAGATGTTTTCTC+GGG - Chr7:53039449-53039468 MsG0780038784.01.T01:intron 40.0%
!! CCCGAGTTCTATTTTGAAGA+TGG - Chr7:53040581-53040600 MsG0780038784.01.T01:intron 40.0%
!! GCATTACCAAGGAGTTTTGA+GGG - Chr7:53038608-53038627 MsG0780038784.01.T01:CDS 40.0%
!! TCTAGCTATGGTTCTGATGT+CGG + Chr7:53041467-53041486 None:intergenic 40.0%
!! TTTTGAGGAGGCTCAATTCA+AGG - Chr7:53041837-53041856 MsG0780038784.01.T01:CDS 40.0%
AACCTATCCCAGATCCATCA+GGG - Chr7:53039401-53039420 MsG0780038784.01.T01:intron 45.0%
AGTAAGCTCTCTCCAGTCAA+TGG - Chr7:53041552-53041571 MsG0780038784.01.T01:intron 45.0%
AGTCTTGCTCCTGCAATTCA+AGG - Chr7:53040482-53040501 MsG0780038784.01.T01:intron 45.0%
CAAACGAATACGTCGCAAGA+GGG - Chr7:53040381-53040400 MsG0780038784.01.T01:intron 45.0%
CACCCAAACTGTTCAAAGGA+TGG + Chr7:53041071-53041090 None:intergenic 45.0%
CACTTGTGACTGTTTGAGAG+AGG + Chr7:53040736-53040755 None:intergenic 45.0%
CAGACGAACGATGTAAATGC+AGG - Chr7:53039668-53039687 MsG0780038784.01.T01:intron 45.0%
CATGAACACCAGACATGACA+CGG - Chr7:53038953-53038972 MsG0780038784.01.T01:intron 45.0%
CCATCACCCAAACTGTTCAA+AGG + Chr7:53041075-53041094 None:intergenic 45.0%
CCTGGATTTGATCCAACTCA+AGG - Chr7:53040551-53040570 MsG0780038784.01.T01:intron 45.0%
CCTTTGAACAGTTTGGGTGA+TGG - Chr7:53041072-53041091 MsG0780038784.01.T01:intron 45.0%
GACTAATGTGACCTCAATCG+CGG + Chr7:53039756-53039775 None:intergenic 45.0%
GACTTGAATGACTCGATAGC+AGG + Chr7:53039430-53039449 None:intergenic 45.0%
GAGCCTAATAGTACCTGTTC+AGG + Chr7:53040614-53040633 None:intergenic 45.0%
GTATCCGAGAACTCGTCATA+GGG - Chr7:53041419-53041438 MsG0780038784.01.T01:intron 45.0%
TAACCTATCCCAGATCCATC+AGG - Chr7:53039400-53039419 MsG0780038784.01.T01:intron 45.0%
TATAATGCTGGGACACTCCT+CGG + Chr7:53039095-53039114 None:intergenic 45.0%
TGCAACATCAGGTCTAGCTA+TGG + Chr7:53041479-53041498 None:intergenic 45.0%
TGGTAGATCGCGGTAATTAG+CGG - Chr7:53041572-53041591 MsG0780038784.01.T01:intron 45.0%
TTCACACCCTCAAAACTCCT+TGG + Chr7:53038617-53038636 None:intergenic 45.0%
TTGCTTTACTCCTGAAGCCT+TGG + Chr7:53041010-53041029 None:intergenic 45.0%
! AGATGTTTTCTCGGGCATGA+GGG - Chr7:53039457-53039476 MsG0780038784.01.T01:CDS 45.0%
! GAACAATATCTGGCTGACTC+TGG - Chr7:53041222-53041241 MsG0780038784.01.T01:intron 45.0%
! GGAGTACCACTAATGAAACC+TGG - Chr7:53040533-53040552 MsG0780038784.01.T01:intron 45.0%
! GGTGGTTTGCAAGACAAAGA+GGG - Chr7:53041394-53041413 MsG0780038784.01.T01:intron 45.0%
! TAGATGTTTTCTCGGGCATG+AGG - Chr7:53039456-53039475 MsG0780038784.01.T01:CDS 45.0%
! TCGGGTCTTTTTCCTTGAGT+TGG + Chr7:53040566-53040585 None:intergenic 45.0%
! TGGTGGTTTGCAAGACAAAG+AGG - Chr7:53041393-53041412 MsG0780038784.01.T01:intron 45.0%
!! CCTTGAGTTGGATCAAATCC+AGG + Chr7:53040554-53040573 None:intergenic 45.0%
!! GAGGAATGTCTCGGTTTTGT+AGG - Chr7:53039339-53039358 MsG0780038784.01.T01:intron 45.0%
!!! AGTTTTGAGGGTGTGAAGAG+AGG - Chr7:53038620-53038639 MsG0780038784.01.T01:CDS 45.0%
ACATGAACAGCCAAGGCTTC+AGG - Chr7:53040997-53041016 MsG0780038784.01.T01:intron 50.0%
AGATGGTGCATACCCTGAAC+AGG - Chr7:53040598-53040617 MsG0780038784.01.T01:intron 50.0%
ATCAGTGTCCGTGTCATGTC+TGG + Chr7:53038964-53038983 None:intergenic 50.0%
CCAAACGAATACGTCGCAAG+AGG - Chr7:53040380-53040399 MsG0780038784.01.T01:intron 50.0%
CCTCTTGCGACGTATTCGTT+TGG + Chr7:53040383-53040402 None:intergenic 50.0%
CCTTCCCTATGACGAGTTCT+CGG + Chr7:53041426-53041445 None:intergenic 50.0%
CTAAATTGAGTCAGGGCTGG+TGG - Chr7:53041376-53041395 MsG0780038784.01.T01:intron 50.0%
CTCCAGTCAATGGTAGATCG+CGG - Chr7:53041562-53041581 MsG0780038784.01.T01:intron 50.0%
GCATCAAAACCTGAGGGAAC+AGG - Chr7:53041871-53041890 MsG0780038784.01.T01:CDS 50.0%
GGGAACAGGTTCACCAACAA+AGG - Chr7:53041885-53041904 MsG0780038784.01.T01:CDS 50.0%
GGTATCCGAGAACTCGTCAT+AGG - Chr7:53041418-53041437 MsG0780038784.01.T01:intron 50.0%
GGTTTGCAAGACAAAGAGGG+AGG - Chr7:53041397-53041416 MsG0780038784.01.T01:intron 50.0%
TACCGCGATCTACCATTGAC+TGG + Chr7:53041567-53041586 None:intergenic 50.0%
!!! TGTCGGACACCGATTTTGTG+TGG - Chr7:53039045-53039064 MsG0780038784.01.T01:CDS 50.0%
ACCTCAATCGCGGTTAGTGG+TGG + Chr7:53039746-53039765 None:intergenic 55.0%
CCGAGAACTCGTCATAGGGA+AGG - Chr7:53041423-53041442 MsG0780038784.01.T01:intron 55.0%
CCTCAATCGCGGTTAGTGGT+GGG + Chr7:53039745-53039764 None:intergenic 55.0%
CTCAGCTTTCGGCCTCCAAT+TGG - Chr7:53039902-53039921 MsG0780038784.01.T01:intron 55.0%
GTGACCTCAATCGCGGTTAG+TGG + Chr7:53039749-53039768 None:intergenic 55.0%
TCGATAGCAGGTGACCCTGA+TGG + Chr7:53039418-53039437 None:intergenic 55.0%
TGCTGCTGGTCGTACAGGTT+TGG - Chr7:53038712-53038731 MsG0780038784.01.T01:intron 55.0%
! CAGGTGACCCTGATGGATCT+GGG + Chr7:53039411-53039430 None:intergenic 55.0%
! GACCCTGATGGATCTGGGAT+AGG + Chr7:53039406-53039425 None:intergenic 55.0%
! GTGTTGGTAGGGTCTATGGG+TGG - Chr7:53041033-53041052 MsG0780038784.01.T01:intron 55.0%
! GTTGGTGAACCTGTTCCCTC+AGG + Chr7:53041883-53041902 None:intergenic 55.0%
!! GTGCTTGTTACTGGTGCTGC+TGG - Chr7:53038698-53038717 MsG0780038784.01.T01:CDS 55.0%
CACAGGACACGCCTAATCCG+AGG - Chr7:53039075-53039094 MsG0780038784.01.T01:CDS 60.0%
CCCACCACTAACCGCGATTG+AGG - Chr7:53039742-53039761 MsG0780038784.01.T01:intron 60.0%
GCTGGGACACTCCTCGGATT+AGG + Chr7:53039089-53039108 None:intergenic 60.0%
! GCAGGTGACCCTGATGGATC+TGG + Chr7:53039412-53039431 None:intergenic 60.0%
!! ACTGGTGCTGCTGGTCGTAC+AGG - Chr7:53038707-53038726 MsG0780038784.01.T01:CDS 60.0%
!! CGCGGTTAGTGGTGGGTTTG+TGG + Chr7:53039738-53039757 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr7 gene 53038218 53042338 53038218 ID=MsG0780038784.01;Name=MsG0780038784.01
Chr7 mRNA 53038218 53042338 53038218 ID=MsG0780038784.01.T01;Parent=MsG0780038784.01;Name=MsG0780038784.01.T01;_AED=0.47;_eAED=0.48;_QI=225|0.85|0.87|1|0.85|0.75|8|212|343
Chr7 exon 53038218 53038296 53038218 ID=MsG0780038784.01.T01:exon:8434;Parent=MsG0780038784.01.T01
Chr7 exon 53038475 53038727 53038475 ID=MsG0780038784.01.T01:exon:8433;Parent=MsG0780038784.01.T01
Chr7 five_prime_UTR 53042114 53042338 53042114 ID=MsG0780038784.01.T01:five_prime_utr;Parent=MsG0780038784.01.T01
Chr7 CDS 53041828 53042113 53041828 ID=MsG0780038784.01.T01:cds;Parent=MsG0780038784.01.T01
Chr7 CDS 53039937 53040208 53039937 ID=MsG0780038784.01.T01:cds;Parent=MsG0780038784.01.T01
Chr7 CDS 53039644 53039680 53039644 ID=MsG0780038784.01.T01:cds;Parent=MsG0780038784.01.T01
Chr7 CDS 53039452 53039549 53039452 ID=MsG0780038784.01.T01:cds;Parent=MsG0780038784.01.T01
Chr7 CDS 53039258 53039352 53039258 ID=MsG0780038784.01.T01:cds;Parent=MsG0780038784.01.T01
Chr7 CDS 53039043 53039166 53039043 ID=MsG0780038784.01.T01:cds;Parent=MsG0780038784.01.T01
Chr7 CDS 53038608 53038727 53038608 ID=MsG0780038784.01.T01:cds;Parent=MsG0780038784.01.T01
Chr7 three_prime_UTR 53038475 53038607 53038475 ID=MsG0780038784.01.T01:three_prime_utr;Parent=MsG0780038784.01.T01
Chr7 three_prime_UTR 53038218 53038296 53038218 ID=MsG0780038784.01.T01:three_prime_utr;Parent=MsG0780038784.01.T01
Chr7 mRNA 53038325 53042338 53038325 ID=MsG0780038784.01.T02;Parent=MsG0780038784.01;Name=MsG0780038784.01.T02;_AED=0.47;_eAED=0.48;_QI=225|0.83|0.85|1|1|1|7|283|343
Chr7 exon 53038325 53038727 53038325 ID=MsG0780038784.01.T02:exon:8435;Parent=MsG0780038784.01.T02
Chr7 five_prime_UTR 53042114 53042338 53042114 ID=MsG0780038784.01.T02:five_prime_utr;Parent=MsG0780038784.01.T02
Chr7 CDS 53041828 53042113 53041828 ID=MsG0780038784.01.T02:cds;Parent=MsG0780038784.01.T02
Chr7 CDS 53039937 53040208 53039937 ID=MsG0780038784.01.T02:cds;Parent=MsG0780038784.01.T02
Chr7 CDS 53039644 53039680 53039644 ID=MsG0780038784.01.T02:cds;Parent=MsG0780038784.01.T02
Chr7 CDS 53039452 53039549 53039452 ID=MsG0780038784.01.T02:cds;Parent=MsG0780038784.01.T02
Chr7 CDS 53039258 53039352 53039258 ID=MsG0780038784.01.T02:cds;Parent=MsG0780038784.01.T02
Chr7 CDS 53039043 53039166 53039043 ID=MsG0780038784.01.T02:cds;Parent=MsG0780038784.01.T02
Chr7 CDS 53038608 53038727 53038608 ID=MsG0780038784.01.T02:cds;Parent=MsG0780038784.01.T02
Chr7 three_prime_UTR 53038325 53038607 53038325 ID=MsG0780038784.01.T02:three_prime_utr;Parent=MsG0780038784.01.T02
Gene Sequence

>MsG0780038784.01.T02

ATGGTTATTATGGCTACTACTACACGTGTTCCTTTTGTTTCTGCTACCACATTTTTTCCTAACCAATGCCATAAATATTCTTTGGTGGCAAGGACAATTCATTCACCAGTTTCTTATGCATCATTAAGGCTTTCTTCTTGCTATTCTACTTCTTTGGTTTCACTTGCATTACCAAGGAGTTTTGAGGGTGTGAAGAGAGGTGCAAATAGAAGAAGTGTTGTTGTTGTTGCTATGGCTGAGAATTCAAAGAGTACTGTGCTTGTTACTGGTGCTGCTGGTCGTACAGGTCAAATAGTTTATAAAAAGTTAAAAGAGCGGCCAAACGAATACGTCGCAAGAGGGTTAGTTAGAACAGAAGAAAGCAAGCAGAAAATTGGTGCTGCAGATGATGTTTTTATCGGTGATATAAGAGATACCGAAAGTCTTGCTCCTGCAATTCAAGGTATAGATGCTCTCATAATCCTTACAAGTGGAGTACCACTAATGAAACCTGGATTTGATCCAACTCAAGGAAAAAGACCCGAGTTCTATTTTGAAGATGGTGCATACCCTGAACAGGTTGACTGGATCGGACAGAAAAATCAAATAGATGCTGCCAAGGCTTCAGGAGTAAAGCAAATTGTGTTGGTAGGGTCTATGGGTGGAACAGACCTTAACCATCCTTTGAACAGTTTGGGTGATGGGAATATATTGGTTTGGAAAAGAAAGGCTGAACAATATCTGGCTGACTCTGGTATTCCGTATACGATTATAAGGTACACCGGTTTCTATTACACTGAACAATATCTGGCTGGTGGTTTGCAAGACAAAGAGGGAGGTATCCGAGAACTCGTCATAGGGAAGGATGATGAGCTTCTAAAGACCGACATCAGAACCATAGCTAGACCTGATGTTGCAGAAGTCTGTATTCAGGCACTAAATTTTGAGGAGGCTCAATTCAAGGCATTTGATTTGGCATCAAAACCTGAGGGAACAGGTTCACCAACAAAGGACTTTAAGGCTTTATTTTCCCAGATCACTACTCGTTTTTGA

>MsG0780038784.01.T01

ATGGTTATTATGGCTACTACTACACGTGTTCCTTTTGTTTCTGCTACCACATTTTTTCCTAACCAATGCCATAAATATTCTTTGGTGGCAAGGACAATTCATTCACCAGTTTCTTATGCATCATTAAGGCTTTCTTCTTGCTATTCTACTTCTTTGGTTTCACTTGCATTACCAAGGAGTTTTGAGGGTGTGAAGAGAGGTGCAAATAGAAGAAGTGTTGTTGTTGTTGCTATGGCTGAGAATTCAAAGAGTACTGTGCTTGTTACTGGTGCTGCTGGTCGTACAGGTCAAATAGTTTATAAAAAGTTAAAAGAGCGGCCAAACGAATACGTCGCAAGAGGGTTAGTTAGAACAGAAGAAAGCAAGCAGAAAATTGGTGCTGCAGATGATGTTTTTATCGGTGATATAAGAGATACCGAAAGTCTTGCTCCTGCAATTCAAGGTATAGATGCTCTCATAATCCTTACAAGTGGAGTACCACTAATGAAACCTGGATTTGATCCAACTCAAGGAAAAAGACCCGAGTTCTATTTTGAAGATGGTGCATACCCTGAACAGGTTGACTGGATCGGACAGAAAAATCAAATAGATGCTGCCAAGGCTTCAGGAGTAAAGCAAATTGTGTTGGTAGGGTCTATGGGTGGAACAGACCTTAACCATCCTTTGAACAGTTTGGGTGATGGGAATATATTGGTTTGGAAAAGAAAGGCTGAACAATATCTGGCTGACTCTGGTATTCCGTATACGATTATAAGGTACACCGGTTTCTATTACACTGAACAATATCTGGCTGGTGGTTTGCAAGACAAAGAGGGAGGTATCCGAGAACTCGTCATAGGGAAGGATGATGAGCTTCTAAAGACCGACATCAGAACCATAGCTAGACCTGATGTTGCAGAAGTCTGTATTCAGGCACTAAATTTTGAGGAGGCTCAATTCAAGGCATTTGATTTGGCATCAAAACCTGAGGGAACAGGTTCACCAACAAAGGACTTTAAGGCTTTATTTTCCCAGATCACTACTCGTTTTTGA

Protein sequence

>MsG0780038784.01.T02

MVIMATTTRVPFVSATTFFPNQCHKYSLVARTIHSPVSYASLRLSSCYSTSLVSLALPRSFEGVKRGANRRSVVVVAMAENSKSTVLVTGAAGRTGQIVYKKLKERPNEYVARGLVRTEESKQKIGAADDVFIGDIRDTESLAPAIQGIDALIILTSGVPLMKPGFDPTQGKRPEFYFEDGAYPEQVDWIGQKNQIDAAKASGVKQIVLVGSMGGTDLNHPLNSLGDGNILVWKRKAEQYLADSGIPYTIIRYTGFYYTEQYLAGGLQDKEGGIRELVIGKDDELLKTDIRTIARPDVAEVCIQALNFEEAQFKAFDLASKPEGTGSPTKDFKALFSQITTRF*

>MsG0780038784.01.T01

MVIMATTTRVPFVSATTFFPNQCHKYSLVARTIHSPVSYASLRLSSCYSTSLVSLALPRSFEGVKRGANRRSVVVVAMAENSKSTVLVTGAAGRTGQIVYKKLKERPNEYVARGLVRTEESKQKIGAADDVFIGDIRDTESLAPAIQGIDALIILTSGVPLMKPGFDPTQGKRPEFYFEDGAYPEQVDWIGQKNQIDAAKASGVKQIVLVGSMGGTDLNHPLNSLGDGNILVWKRKAEQYLADSGIPYTIIRYTGFYYTEQYLAGGLQDKEGGIRELVIGKDDELLKTDIRTIARPDVAEVCIQALNFEEAQFKAFDLASKPEGTGSPTKDFKALFSQITTRF*