AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380016974.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016974.01.T01 MTR_3g098940 91.557 379 7 1 1 354 2 380 0.0 708
MsG0380016974.01.T01 MTR_3g098940 90.805 348 7 1 1 323 2 349 0.0 637
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016974.01.T01 AT5G51140 62.983 362 89 5 26 354 46 395 9.79e-156 443
MsG0380016974.01.T01 AT5G51140 62.606 353 87 5 26 345 46 386 1.36e-148 425

Find 100 sgRNAs with CRISPR-Local

Find 418 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACCCCTTCGGTGCCAAATT+TGG 0.184524 3:-90198282 None:intergenic
ATAAAATCTTGCTATTATTA+AGG 0.224635 3:+90199151 MsG0380016974.01.T01:three_prime_UTR
CGCGTTCATTTACAGTCTTC+TGG 0.226994 3:+90198066 MsG0380016974.01.T01:CDS
GGGATCAACCCAAGTTTATT+AGG 0.253148 3:-90199069 None:intergenic
TAGCATTTCTGGCTATAATA+AGG 0.255944 3:-90194403 None:intergenic
GTGTACCAACTGTCCAAATT+TGG 0.306598 3:+90198269 MsG0380016974.01.T01:CDS
AGTTTCGCCCAATCAGGATA+TGG 0.308758 3:-90198993 None:intergenic
TTATTCGCTGAGGAATTTAA+AGG 0.319656 3:+90192251 MsG0380016974.01.T01:CDS
AGTGCAAGTTTACTCAATTT+CGG 0.343532 3:+90199286 MsG0380016974.01.T01:three_prime_UTR
TCGAGCATTATAGTCTATAT+TGG 0.345385 3:-90196164 None:intergenic
GCTTCTTTGACATCAAATTT+CGG 0.348641 3:+90198186 MsG0380016974.01.T01:CDS
TGCGGTAAAGGAGGATTTGC+TGG 0.374155 3:-90191933 None:intergenic
AATATATTGCAAAAGTAGTT+GGG 0.377867 3:+90195289 MsG0380016974.01.T01:CDS
TACAGCATGTCATTGGCTAT+TGG 0.388217 3:-90198093 None:intergenic
GAGAGAAGAGAAAGAGTGTA+TGG 0.394418 3:+90191893 MsG0380016974.01.T01:CDS
GAGTACCATTGCTACTAATC+CGG 0.396097 3:-90197457 None:intergenic
CAATATATTGCAAAAGTAGT+TGG 0.398952 3:+90195288 MsG0380016974.01.T01:CDS
ACTGTTGATAGATCTATTAA+TGG 0.400312 3:+90198129 MsG0380016974.01.T01:CDS
ATGAATGCCCATATCCTGAT+TGG 0.401822 3:+90198985 MsG0380016974.01.T01:CDS
ATCAATGCTAAACTCCTCAT+TGG 0.413066 3:-90198241 None:intergenic
TTACAAACAGTTAGCACATC+TGG 0.415839 3:-90192674 None:intergenic
AGCTAAAGTTTCGCCCAATC+AGG 0.416919 3:-90198999 None:intergenic
ACGATGTAATCTTGCGGTAA+AGG 0.424137 3:-90191945 None:intergenic
TCTGGTTCTGTATGAAGAAT+AGG 0.424198 3:-90192656 None:intergenic
ACAGCATGTCATTGGCTATT+GGG 0.433925 3:-90198092 None:intergenic
ACTTGCACTAATGAAGTATA+TGG 0.434589 3:-90199272 None:intergenic
AAGGTCAGAGACTCTACAAA+AGG 0.453239 3:+90197410 MsG0380016974.01.T01:intron
CGGTGCCAAATTTGGACAGT+TGG 0.457022 3:-90198274 None:intergenic
ATATTTCTTGGCGCGTGAGT+TGG 0.460423 3:+90191846 None:intergenic
ACAATCAAACCTAATAAACT+TGG 0.469396 3:+90199060 MsG0380016974.01.T01:three_prime_UTR
AGTCACTGGCCGCACTCATC+AGG 0.471463 3:+90197502 MsG0380016974.01.T01:CDS
AGTTTATTAGGTTTGATTGT+CGG 0.475071 3:-90199057 None:intergenic
GATTTAACTACGTATGAAAC+CGG 0.475395 3:-90192499 None:intergenic
TTACTTACCGGGACAGATGC+AGG 0.477862 3:-90192698 None:intergenic
CTGTCCAAATTTGGCACCGA+AGG 0.478848 3:+90198278 MsG0380016974.01.T01:CDS
CTGTTGATAGATCTATTAAT+GGG 0.482702 3:+90198130 MsG0380016974.01.T01:CDS
AAACTTACATAATATTCATA+AGG 0.492762 3:-90192278 None:intergenic
CGACTGGATCGCCTTGTCTC+CGG 0.493010 3:+90194377 MsG0380016974.01.T01:CDS
TGATGAGTGCGGCCAGTGAC+TGG 0.494032 3:-90197500 None:intergenic
TGAGATGTACAGCATGTCAT+TGG 0.495292 3:-90198100 None:intergenic
TAAAGAATTGCATACCCCTT+CGG 0.504219 3:-90198294 None:intergenic
GCGATGAATTCGAAGTAGTA+TGG 0.504359 3:-90192088 None:intergenic
GTTTCGCCCAATCAGGATAT+GGG 0.504686 3:-90198992 None:intergenic
AGCTGTGCAGGTTAGCGAGC+AGG 0.505409 3:+90199126 MsG0380016974.01.T01:three_prime_UTR
TGAATGCCCATATCCTGATT+GGG 0.506186 3:+90198986 MsG0380016974.01.T01:CDS
CCCAGGTTATTTATACGTCA+TGG 0.509828 3:+90199089 MsG0380016974.01.T01:three_prime_UTR
TTACATTGTATGCGGTACTC+TGG 0.510906 3:+90198948 MsG0380016974.01.T01:CDS
CAAATAAAATACCTCATCCT+CGG 0.512397 3:-90195319 None:intergenic
AAATAAAATACCTCATCCTC+GGG 0.514851 3:-90195318 None:intergenic
TGTCTCAGCTGTCCATCGAC+TGG 0.517338 3:+90194361 MsG0380016974.01.T01:intron
TGGGGAATTTCCCGAGGATG+AGG 0.518507 3:+90195308 MsG0380016974.01.T01:CDS
CAGGCATGAACCACCTGTGA+TGG 0.518717 3:+90192622 MsG0380016974.01.T01:intron
AATAAACTTGGGTTGATCCC+AGG 0.521445 3:+90199072 MsG0380016974.01.T01:three_prime_UTR
TCTGGCTATAATAAGGAGTC+CGG 0.521448 3:-90194396 None:intergenic
TCCATGACGTATAAATAACC+TGG 0.522363 3:-90199090 None:intergenic
AGTACCATTGCTACTAATCC+GGG 0.522821 3:-90197456 None:intergenic
TGGTTGTTACAGATTGAGGC+TGG 0.531299 3:+90195252 MsG0380016974.01.T01:intron
TGAGGGAAAAGATCTAATGA+TGG 0.534383 3:+90199227 MsG0380016974.01.T01:three_prime_UTR
AGATATGATACTGATGAAGA+AGG 0.536074 3:+90198918 MsG0380016974.01.T01:intron
ACTTATTAAACTTACTTACC+GGG 0.543578 3:-90192709 None:intergenic
TTGTAAGCCTGCATCTGTCC+CGG 0.551212 3:+90192691 MsG0380016974.01.T01:CDS
GGGCATTCATATGTCCATCC+AGG 0.555137 3:-90198972 None:intergenic
ATTATTAAGGCTCATTAGAG+AGG 0.559065 3:+90199164 MsG0380016974.01.T01:three_prime_UTR
TAGGTTAGTGCGGTGAAATG+TGG 0.563936 3:+90192448 MsG0380016974.01.T01:intron
TGTCCAAATTTGGCACCGAA+GGG 0.570374 3:+90198279 MsG0380016974.01.T01:CDS
AGGTCAGAGACTCTACAAAA+GGG 0.571744 3:+90197411 MsG0380016974.01.T01:intron
TGTGGAAGGATTCAAGTTGA+CGG 0.572120 3:+90192466 MsG0380016974.01.T01:CDS
TGAATGCATTGCATTTGTCA+AGG 0.573794 3:+90199331 MsG0380016974.01.T01:three_prime_UTR
CAAGATTACATCGTTCGAAA+CGG 0.576471 3:+90191954 MsG0380016974.01.T01:CDS
CAATCAAACCTAATAAACTT+GGG 0.578764 3:+90199061 MsG0380016974.01.T01:three_prime_UTR
GAGGGAAAAGATCTAATGAT+GGG 0.578966 3:+90199228 MsG0380016974.01.T01:three_prime_UTR
TTGCCTCCACAAAATTTACC+CGG 0.581737 3:+90197438 MsG0380016974.01.T01:CDS
TGCGGTACTCTGGACCTGGA+TGG 0.588015 3:+90198958 MsG0380016974.01.T01:CDS
ATACTGATGAAGAAGGTTTG+TGG 0.590363 3:+90198925 MsG0380016974.01.T01:CDS
AGACAAGGCGATCCAGTCGA+TGG 0.592536 3:-90194373 None:intergenic
CTTTAGTCCCTGCTATAGTG+AGG 0.592871 3:+90199209 MsG0380016974.01.T01:three_prime_UTR
TTTAGTCCCTGCTATAGTGA+GGG 0.594441 3:+90199210 MsG0380016974.01.T01:three_prime_UTR
ATAGACTATAATGCTCGAGA+AGG 0.597554 3:+90196169 MsG0380016974.01.T01:CDS
TGTATGCGGTACTCTGGACC+TGG 0.597884 3:+90198954 MsG0380016974.01.T01:CDS
TAATAAGGAGTCCGGAGACA+AGG 0.599949 3:-90194388 None:intergenic
TTTACCCGGATTAGTAGCAA+TGG 0.600058 3:+90197452 MsG0380016974.01.T01:CDS
GGAACATCACAAGCCATCAC+AGG 0.601035 3:-90192635 None:intergenic
AGAAGGAAGAAGCACAGCAG+AGG 0.605852 3:+90196186 MsG0380016974.01.T01:CDS
ATATATTGCAAAAGTAGTTG+GGG 0.609841 3:+90195290 MsG0380016974.01.T01:CDS
TTAGTGCGGTGAAATGTGGA+AGG 0.615192 3:+90192452 MsG0380016974.01.T01:CDS
AGCCAGAAATGCTACAAAAG+CGG 0.615290 3:+90194412 MsG0380016974.01.T01:CDS
ATGTAATCTTGCGGTAAAGG+AGG 0.615710 3:-90191942 None:intergenic
TATTGTAGATTTATTCGCTG+AGG 0.616478 3:+90192241 MsG0380016974.01.T01:CDS
TTTGGACAGTTGGTACACAT+AGG 0.616779 3:-90198264 None:intergenic
AGTTGACGGTGAAATCGTGC+CGG 0.620508 3:+90192480 MsG0380016974.01.T01:CDS
CAGAGACTCTACAAAAGGGA+AGG 0.630227 3:+90197415 MsG0380016974.01.T01:CDS
GTATGGATCTTAGGTTAGTG+CGG 0.630653 3:+90192438 MsG0380016974.01.T01:intron
GTTTGTGGTTACATTGTATG+CGG 0.636819 3:+90198940 MsG0380016974.01.T01:CDS
GTCCAAATTTGGCACCGAAG+GGG 0.645456 3:+90198280 MsG0380016974.01.T01:CDS
CCATGACGTATAAATAACCT+GGG 0.653807 3:-90199089 None:intergenic
TTGTCAAGAAAATTCCAATG+AGG 0.670627 3:+90198227 MsG0380016974.01.T01:CDS
ACATCACAAGCCATCACAGG+TGG 0.674685 3:-90192632 None:intergenic
AGTAGTTGGGGAATTTCCCG+AGG 0.679238 3:+90195302 MsG0380016974.01.T01:CDS
TTTCGAACGATGTAATCTTG+CGG 0.684194 3:-90191951 None:intergenic
AAGAGTGTATGGATATCGTG+TGG 0.692668 3:+90191904 MsG0380016974.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGAGAATTAAAATAAAAAA+TGG - Chr3:90192141-90192160 None:intergenic 10.0%
!!! AATTTAAAATTTGTAGTTTT+CGG - Chr3:90196760-90196779 None:intergenic 10.0%
!!! ATTTTTGGATATAATATATA+TGG - Chr3:90194982-90195001 None:intergenic 10.0%
!!! CTAAAAATAAATGTTTTATA+CGG - Chr3:90196605-90196624 None:intergenic 10.0%
!!! TTTTTGGATATAATATATAT+GGG - Chr3:90194981-90195000 None:intergenic 10.0%
!! AAAAACTTTCTATACAAATA+TGG + Chr3:90198579-90198598 MsG0380016974.01.T01:intron 15.0%
!! AAACTTACATAATATTCATA+AGG - Chr3:90192281-90192300 None:intergenic 15.0%
!! AAAGTTAATACAGATTATTT+CGG + Chr3:90198375-90198394 MsG0380016974.01.T01:intron 15.0%
!! AAATTAAATTACAAGATAGA+TGG + Chr3:90197084-90197103 MsG0380016974.01.T01:intron 15.0%
!! AATATGTGAAAATAAAAAAG+AGG - Chr3:90196322-90196341 None:intergenic 15.0%
!! AGAAAATCCATTAAAATTTA+AGG - Chr3:90193906-90193925 None:intergenic 15.0%
!! ATTATTCATATGATAGTTTA+TGG + Chr3:90192839-90192858 MsG0380016974.01.T01:intron 15.0%
!! GTCTTAGATAAAAAAAAAAT+TGG - Chr3:90195996-90196015 None:intergenic 15.0%
!! TAAAATTATAAAACGTAGTT+AGG - Chr3:90193250-90193269 None:intergenic 15.0%
!! TATATGTAATAAAGATAGAA+TGG + Chr3:90197918-90197937 MsG0380016974.01.T01:intron 15.0%
!! TATTACATATATTCTCTATA+AGG - Chr3:90197909-90197928 None:intergenic 15.0%
!! TGGATTTAACAATAAATTTA+AGG + Chr3:90196715-90196734 MsG0380016974.01.T01:intron 15.0%
!!! ACTGTTTTCATTTTATTTTT+AGG - Chr3:90196407-90196426 None:intergenic 15.0%
!!! ATAAAAATTTAAAACCTCTT+GGG + Chr3:90197174-90197193 MsG0380016974.01.T01:intron 15.0%
!!! ATAAAATCTTGCTATTATTA+AGG + Chr3:90199151-90199170 MsG0380016974.01.T01:three_prime_UTR 15.0%
!!! CATAAAGATTTTCATATAAT+AGG - Chr3:90197032-90197051 None:intergenic 15.0%
!!! CATATCTACAATTTAAAATT+TGG - Chr3:90198905-90198924 None:intergenic 15.0%
!!! TAAATTTTCTGACTAAATAT+AGG + Chr3:90194634-90194653 MsG0380016974.01.T01:intron 15.0%
!!! TACATGATAATCATTATTTT+TGG - Chr3:90194997-90195016 None:intergenic 15.0%
!!! TATAAAAATTTAAAACCTCT+TGG + Chr3:90197173-90197192 MsG0380016974.01.T01:intron 15.0%
!!! TTATGATATAGGTTATTTTT+AGG + Chr3:90196469-90196488 MsG0380016974.01.T01:intron 15.0%
!!! TTGATAATTAAAATTCAAAG+TGG + Chr3:90197329-90197348 MsG0380016974.01.T01:intron 15.0%
!!! TTTTGGATATAATATATATG+GGG - Chr3:90194980-90194999 None:intergenic 15.0%
!!! TTTTTCATTACCAAAAATTA+GGG - Chr3:90198564-90198583 None:intergenic 15.0%
!! AAAAAAAAAATTGGTTAACC+AGG - Chr3:90195987-90196006 None:intergenic 20.0%
!! AAAAAAAAATTGGTTAACCA+GGG - Chr3:90195986-90196005 None:intergenic 20.0%
!! AAGGTTTATTAATGAAACAA+TGG - Chr3:90197890-90197909 None:intergenic 20.0%
!! AAGTTAATACAGATTATTTC+GGG + Chr3:90198376-90198395 MsG0380016974.01.T01:intron 20.0%
!! AATATATTGCAAAAGTAGTT+GGG + Chr3:90195289-90195308 MsG0380016974.01.T01:CDS 20.0%
!! AATCATAAGAAATAAGTGTA+AGG - Chr3:90193817-90193836 None:intergenic 20.0%
!! AATGTAAAGTGATTTATGTT+TGG + Chr3:90196675-90196694 MsG0380016974.01.T01:intron 20.0%
!! ACTAATATCATTTATTTGCA+GGG + Chr3:90195361-90195380 MsG0380016974.01.T01:intron 20.0%
!! AGATATAAAAGATACATGAA+AGG - Chr3:90197661-90197680 None:intergenic 20.0%
!! ATAATTAAAATTCAAAGTGG+CGG + Chr3:90197332-90197351 MsG0380016974.01.T01:intron 20.0%
!! ATCAATTATAAATACTTGCA+GGG - Chr3:90195406-90195425 None:intergenic 20.0%
!! ATGGTGAAATGATTATATAA+TGG - Chr3:90194123-90194142 None:intergenic 20.0%
!! ATTAATTATACTGTTATCAG+TGG - Chr3:90195814-90195833 None:intergenic 20.0%
!! CAACAAATTGAAGATTTATA+GGG - Chr3:90192188-90192207 None:intergenic 20.0%
!! GACTTATGAATTATAATCTT+TGG + Chr3:90194696-90194715 MsG0380016974.01.T01:intron 20.0%
!! GTTTATGATCATTTAGATAA+AGG - Chr3:90196916-90196935 None:intergenic 20.0%
!! TAAAAGAATGCAACATATAT+TGG - Chr3:90197056-90197075 None:intergenic 20.0%
!! TACTAATATCATTTATTTGC+AGG + Chr3:90195360-90195379 MsG0380016974.01.T01:intron 20.0%
!! TATCAATTATAAATACTTGC+AGG - Chr3:90195407-90195426 None:intergenic 20.0%
!! TATTCTTATTATCAGTGAAT+CGG + Chr3:90196434-90196453 MsG0380016974.01.T01:intron 20.0%
!! TCAACAAATTGAAGATTTAT+AGG - Chr3:90192189-90192208 None:intergenic 20.0%
!! TTAGGAATTTGTAATGAAAA+AGG - Chr3:90196389-90196408 None:intergenic 20.0%
!!! AATGTTTTCTTAAATCAAAC+AGG - Chr3:90196257-90196276 None:intergenic 20.0%
!!! ACATTTATTTTTAGTGTGTT+TGG + Chr3:90196611-90196630 MsG0380016974.01.T01:intron 20.0%
!!! AGAATTGATTTTATCATGTT+TGG - Chr3:90196837-90196856 None:intergenic 20.0%
!!! ATGGATTGAAAATGAATTTT+TGG - Chr3:90194104-90194123 None:intergenic 20.0%
!!! GAATATATGTTTGATAATGA+AGG + Chr3:90197391-90197410 MsG0380016974.01.T01:intron 20.0%
!!! GTTTTTCATTACCAAAAATT+AGG - Chr3:90198565-90198584 None:intergenic 20.0%
!!! TCAGTTAAAAAAGTTTTTCA+CGG - Chr3:90196546-90196565 None:intergenic 20.0%
!!! TGATAGTCTGAAAAATATTT+TGG + Chr3:90193037-90193056 MsG0380016974.01.T01:intron 20.0%
!!! TTAAATGTATATTTTTGTCC+CGG + Chr3:90194811-90194830 MsG0380016974.01.T01:intron 20.0%
!!! TTACACTTATTTCTTATGAT+TGG + Chr3:90193816-90193835 MsG0380016974.01.T01:intron 20.0%
!!! TTATAACACTGTTTTGTTTT+GGG + Chr3:90193619-90193638 MsG0380016974.01.T01:intron 20.0%
!!! TTCAATTTTTTTTCTTGTAG+TGG - Chr3:90193788-90193807 None:intergenic 20.0%
!!! TTGATTTTTCTTTTATATCC+CGG + Chr3:90194297-90194316 MsG0380016974.01.T01:intron 20.0%
!!! TTTTCATTACCAAAAATTAG+GGG - Chr3:90198563-90198582 None:intergenic 20.0%
!!! TTTTTTTCTTATTCTTGTTG+AGG + Chr3:90193295-90193314 MsG0380016974.01.T01:intron 20.0%
! AAAAAATAAGCCAATCCAAA+CGG - Chr3:90192776-90192795 None:intergenic 25.0%
! AAAACTGAAAAACAGAGAAA+AGG - Chr3:90198709-90198728 None:intergenic 25.0%
! AAATAAATGTTGAAAGTCTC+TGG + Chr3:90198629-90198648 MsG0380016974.01.T01:intron 25.0%
! AAATTCTACAGTTATAATGG+AGG - Chr3:90195233-90195252 None:intergenic 25.0%
! AAGAAAAATCAAGTACAGAA+TGG - Chr3:90194289-90194308 None:intergenic 25.0%
! AAGATTTATAGGGTTTAACA+AGG - Chr3:90192178-90192197 None:intergenic 25.0%
! ACAATCAAACCTAATAAACT+TGG + Chr3:90199060-90199079 MsG0380016974.01.T01:three_prime_UTR 25.0%
! ACCAAATTCTACAGTTATAA+TGG - Chr3:90195236-90195255 None:intergenic 25.0%
! ACCTAATACTATGCAAATAT+CGG + Chr3:90198012-90198031 MsG0380016974.01.T01:intron 25.0%
! ACTTATTAAACTTACTTACC+GGG - Chr3:90192712-90192731 None:intergenic 25.0%
! AGAGACTTTCAACATTTATT+TGG - Chr3:90198630-90198649 None:intergenic 25.0%
! AGATTTATAGGGTTTAACAA+GGG - Chr3:90192177-90192196 None:intergenic 25.0%
! AGGTGTATCATATAATGATA+AGG + Chr3:90194147-90194166 MsG0380016974.01.T01:intron 25.0%
! AGTTTATTAGGTTTGATTGT+CGG - Chr3:90199060-90199079 None:intergenic 25.0%
! ATAAGAAATAAGTGTAAGGA+TGG - Chr3:90193813-90193832 None:intergenic 25.0%
! ATAATCATTTCACCATAAAG+AGG + Chr3:90194127-90194146 MsG0380016974.01.T01:intron 25.0%
! ATATATTGCAAAAGTAGTTG+GGG + Chr3:90195290-90195309 MsG0380016974.01.T01:CDS 25.0%
! ATGAAACAATATAGAACCAA+AGG - Chr3:90196217-90196236 None:intergenic 25.0%
! ATGTAACTAAAACACATACA+GGG + Chr3:90192749-90192768 MsG0380016974.01.T01:intron 25.0%
! CAATATATTGCAAAAGTAGT+TGG + Chr3:90195288-90195307 MsG0380016974.01.T01:CDS 25.0%
! CAATCAAACCTAATAAACTT+GGG + Chr3:90199061-90199080 MsG0380016974.01.T01:three_prime_UTR 25.0%
! CACTTATTAAACTTACTTAC+CGG - Chr3:90192713-90192732 None:intergenic 25.0%
! CTGAGGTTAAAAAAATACAA+TGG - Chr3:90198856-90198875 None:intergenic 25.0%
! GCATAAATAACTCAATTATG+AGG + Chr3:90195624-90195643 MsG0380016974.01.T01:intron 25.0%
! GGAAATTATAGTGTAATCAT+TGG - Chr3:90193137-90193156 None:intergenic 25.0%
! GGGAAAATGAAAGTAAAAAT+TGG - Chr3:90194248-90194267 None:intergenic 25.0%
! TCACATATTTGTACATGAAA+TGG + Chr3:90196333-90196352 MsG0380016974.01.T01:intron 25.0%
! TCATCAGGTAAAAAAATTGT+TGG + Chr3:90197517-90197536 MsG0380016974.01.T01:intron 25.0%
! TCATTATACTATAGACAGTT+AGG - Chr3:90198414-90198433 None:intergenic 25.0%
! TCCATTATAACTGTAGAATT+TGG + Chr3:90195232-90195251 MsG0380016974.01.T01:intron 25.0%
! TGGATGTATTTATGTAAATG+TGG + Chr3:90196695-90196714 MsG0380016974.01.T01:intron 25.0%
! TGGTAAAAACTAATCATTGT+TGG + Chr3:90197280-90197299 MsG0380016974.01.T01:intron 25.0%
! TGTCTATAGTATAATGATGT+TGG + Chr3:90198417-90198436 MsG0380016974.01.T01:intron 25.0%
! TTATATGATACACCTCTTTA+TGG - Chr3:90194142-90194161 None:intergenic 25.0%
! TTTAACTAAATGTCTTGGAA+AGG - Chr3:90198668-90198687 None:intergenic 25.0%
! TTTCAAACCTGTGTAAAAAA+TGG - Chr3:90192540-90192559 None:intergenic 25.0%
! TTTCATGGTAGAAAAATCTA+GGG + Chr3:90196231-90196250 MsG0380016974.01.T01:intron 25.0%
! TTTGTGTTTGAAAAAGCAAT+AGG + Chr3:90195733-90195752 MsG0380016974.01.T01:intron 25.0%
!! ACTGTTGATAGATCTATTAA+TGG + Chr3:90198129-90198148 MsG0380016974.01.T01:CDS 25.0%
!! ACTTTTGTAAAACTAGATTC+CGG - Chr3:90194833-90194852 None:intergenic 25.0%
!! AGGTATCTAACAATTTTTGA+AGG - Chr3:90196967-90196986 None:intergenic 25.0%
!! ATTTTCTATTAGTTGCCTAA+GGG + Chr3:90193919-90193938 MsG0380016974.01.T01:intron 25.0%
!! CTGTTGATAGATCTATTAAT+GGG + Chr3:90198130-90198149 MsG0380016974.01.T01:CDS 25.0%
!! GAATTTTCTTGACAATCTTT+GGG - Chr3:90198222-90198241 None:intergenic 25.0%
!! GTCATTTAGACTATCATTTT+GGG + Chr3:90195573-90195592 MsG0380016974.01.T01:intron 25.0%
!! TACTTCAATAATCCTTTTTC+TGG + Chr3:90195499-90195518 MsG0380016974.01.T01:intron 25.0%
!! TCGAAGTCCTTAAATTTTAA+TGG + Chr3:90193896-90193915 MsG0380016974.01.T01:intron 25.0%
!! TCTTCAATTTGAAATGCATT+TGG + Chr3:90193213-90193232 MsG0380016974.01.T01:intron 25.0%
!! TGTATGTTTGGATTCAATTT+TGG - Chr3:90196888-90196907 None:intergenic 25.0%
!! TTTTACGTGAATATCTGATT+AGG + Chr3:90193321-90193340 MsG0380016974.01.T01:intron 25.0%
!!! AAGAACTGCTTTTATGATAT+AGG + Chr3:90196458-90196477 MsG0380016974.01.T01:intron 25.0%
!!! AATAGTATCTCAATTTTGAC+TGG - Chr3:90196102-90196121 None:intergenic 25.0%
!!! ATGGAATCTAGTTTTTCAAA+TGG + Chr3:90194902-90194921 MsG0380016974.01.T01:intron 25.0%
!!! CTTATAACACTGTTTTGTTT+TGG + Chr3:90193618-90193637 MsG0380016974.01.T01:intron 25.0%
!!! TCTAACAATTTTTGAAGGAA+AGG - Chr3:90196962-90196981 None:intergenic 25.0%
!!! TGTATGTGTTTTAGTTACAT+GGG - Chr3:90192749-90192768 None:intergenic 25.0%
!!! TGTCATTTAGACTATCATTT+TGG + Chr3:90195572-90195591 MsG0380016974.01.T01:intron 25.0%
!!! TTTGGTTCTATATTGTTTCA+TGG + Chr3:90196216-90196235 MsG0380016974.01.T01:intron 25.0%
AAAAATAAGCCAATCCAAAC+GGG - Chr3:90192775-90192794 None:intergenic 30.0%
AAAGGAAAATCATTAACGTG+TGG - Chr3:90198691-90198710 None:intergenic 30.0%
AAATAAAATACCTCATCCTC+GGG - Chr3:90195321-90195340 None:intergenic 30.0%
AAATTCTTCTTATATCGTGC+AGG + Chr3:90192049-90192068 MsG0380016974.01.T01:intron 30.0%
AACTTAATCTTGTAATCCAG+TGG + Chr3:90198808-90198827 MsG0380016974.01.T01:intron 30.0%
AATTCAAAACACGTAACGAT+TGG - Chr3:90193183-90193202 None:intergenic 30.0%
AATTTAAGGACTTCGATTAC+CGG - Chr3:90193892-90193911 None:intergenic 30.0%
AATTTGGTTGTTACAGATTG+AGG + Chr3:90195248-90195267 MsG0380016974.01.T01:intron 30.0%
ACATTTATTTGGATCAACAG+TGG - Chr3:90198619-90198638 None:intergenic 30.0%
ACTTGCACTAATGAAGTATA+TGG - Chr3:90199275-90199294 None:intergenic 30.0%
AGATATGATACTGATGAAGA+AGG + Chr3:90198918-90198937 MsG0380016974.01.T01:intron 30.0%
AGTAAAGAAATTGTGAGAAG+AGG - Chr3:90193010-90193029 None:intergenic 30.0%
AGTGCAAGTTTACTCAATTT+CGG + Chr3:90199286-90199305 MsG0380016974.01.T01:three_prime_UTR 30.0%
ATAAAGGTCAAGTGTATGTT+TGG - Chr3:90196900-90196919 None:intergenic 30.0%
ATAACTCAATTATGAGGCTT+TGG + Chr3:90195630-90195649 MsG0380016974.01.T01:intron 30.0%
ATAAGTATGCAAAATGTGCA+CGG - Chr3:90194209-90194228 None:intergenic 30.0%
ATCCTTAAAGACTCAATTGA+TGG - Chr3:90197208-90197227 None:intergenic 30.0%
ATGCTAGGTTAAAAATCGAT+GGG + Chr3:90192208-90192227 MsG0380016974.01.T01:intron 30.0%
ATTATTAAGGCTCATTAGAG+AGG + Chr3:90199164-90199183 MsG0380016974.01.T01:three_prime_UTR 30.0%
CAAATAAAATACCTCATCCT+CGG - Chr3:90195322-90195341 None:intergenic 30.0%
CATATATGTGTATATACGCT+GGG - Chr3:90197863-90197882 None:intergenic 30.0%
CATGTAACTAAAACACATAC+AGG + Chr3:90192748-90192767 MsG0380016974.01.T01:intron 30.0%
CCAAATATTTGTCTTACAGA+CGG - Chr3:90193561-90193580 None:intergenic 30.0%
CGGTAAGTAAGTTTAATAAG+TGG + Chr3:90192711-90192730 MsG0380016974.01.T01:intron 30.0%
CTCTTGCAAATACAAAGTTA+AGG + Chr3:90193373-90193392 MsG0380016974.01.T01:intron 30.0%
CTGGTGATCAAAATCTTAAA+AGG - Chr3:90196987-90197006 None:intergenic 30.0%
CTTAACTTTGTATTTGCAAG+AGG - Chr3:90193375-90193394 None:intergenic 30.0%
CTTAATGATACTCCAGAAAA+AGG - Chr3:90195514-90195533 None:intergenic 30.0%
CTTCAAAGAACTTTCATTTC+CGG + Chr3:90196035-90196054 MsG0380016974.01.T01:intron 30.0%
GAAATAGCTGTCTAAATTGT+CGG - Chr3:90193161-90193180 None:intergenic 30.0%
GATAGTTCAGAAAACAACAT+GGG + Chr3:90197225-90197244 MsG0380016974.01.T01:intron 30.0%
GATTTAACTACGTATGAAAC+CGG - Chr3:90192502-90192521 None:intergenic 30.0%
GCTAAATATATCCATGCAAA+TGG - Chr3:90197756-90197775 None:intergenic 30.0%
GCTATTGGTAAGATTTGTAT+TGG + Chr3:90195080-90195099 MsG0380016974.01.T01:intron 30.0%
GCTTCTTTGACATCAAATTT+CGG + Chr3:90198186-90198205 MsG0380016974.01.T01:CDS 30.0%
GGATTACAAGATTAAGTTAC+TGG - Chr3:90198806-90198825 None:intergenic 30.0%
GTTTAAATAAGATGAAGTGC+AGG - Chr3:90197994-90198013 None:intergenic 30.0%
GTTTCATGGTAGAAAAATCT+AGG + Chr3:90196230-90196249 MsG0380016974.01.T01:intron 30.0%
GTTTGAAAAAGCAATAGGAT+GGG + Chr3:90195738-90195757 MsG0380016974.01.T01:intron 30.0%
TAAAACCTTCAAACAGTACT+TGG + Chr3:90195883-90195902 MsG0380016974.01.T01:intron 30.0%
TAAACTCAATTGACCATTGT+TGG + Chr3:90195015-90195034 MsG0380016974.01.T01:intron 30.0%
TAACATAGTATAGCATCATC+AGG + Chr3:90195463-90195482 MsG0380016974.01.T01:intron 30.0%
TAGCAAATTATGCTTGAAAC+TGG + Chr3:90194758-90194777 MsG0380016974.01.T01:intron 30.0%
TATTGTAGATTTATTCGCTG+AGG + Chr3:90192241-90192260 MsG0380016974.01.T01:CDS 30.0%
TCAGGTAAAAAAATTGTTGG+CGG + Chr3:90197520-90197539 MsG0380016974.01.T01:intron 30.0%
TCCGATATTTGCATAGTATT+AGG - Chr3:90198016-90198035 None:intergenic 30.0%
TCGAGCATTATAGTCTATAT+TGG - Chr3:90196167-90196186 None:intergenic 30.0%
TGATTGTTTGTATGGATCTT+AGG + Chr3:90192429-90192448 MsG0380016974.01.T01:intron 30.0%
TGTGGTTTAACTAAATGTCT+TGG - Chr3:90198673-90198692 None:intergenic 30.0%
TGTTTGAAAAAGCAATAGGA+TGG + Chr3:90195737-90195756 MsG0380016974.01.T01:intron 30.0%
TTATTCGCTGAGGAATTTAA+AGG + Chr3:90192251-90192270 MsG0380016974.01.T01:CDS 30.0%
TTCAAAGAACTTTCATTTCC+GGG + Chr3:90196036-90196055 MsG0380016974.01.T01:intron 30.0%
TTCGATTTCGAAGTTGTTAT+TGG - Chr3:90192018-90192037 None:intergenic 30.0%
TTGTCAAGAAAATTCCAATG+AGG + Chr3:90198227-90198246 MsG0380016974.01.T01:CDS 30.0%
TTTAGACAAGAGGTAAGTTT+GGG + Chr3:90194440-90194459 MsG0380016974.01.T01:intron 30.0%
! AGAGTTTGCATCAATCATTT+TGG + Chr3:90193702-90193721 MsG0380016974.01.T01:intron 30.0%
! CATTTGATGCTTTTCTTCAT+AGG + Chr3:90192563-90192582 MsG0380016974.01.T01:intron 30.0%
! CTTTTGTAAAACTAGATTCC+GGG - Chr3:90194832-90194851 None:intergenic 30.0%
! GATTTTCTATTAGTTGCCTA+AGG + Chr3:90193918-90193937 MsG0380016974.01.T01:intron 30.0%
! GCGGTGATATAAATTGTTTT+TGG + Chr3:90196638-90196657 MsG0380016974.01.T01:intron 30.0%
! GGAATTTTCTTGACAATCTT+TGG - Chr3:90198223-90198242 None:intergenic 30.0%
! GTGATCAAAATTGATTCTAG+AGG - Chr3:90196864-90196883 None:intergenic 30.0%
! TAATGTAAGCATTGTATCAG+AGG - Chr3:90198515-90198534 None:intergenic 30.0%
! TATAATGATGTTGGTTGTGA+GGG + Chr3:90198426-90198445 MsG0380016974.01.T01:intron 30.0%
! TATTGGTTATTATGACGTTC+TGG + Chr3:90197260-90197279 MsG0380016974.01.T01:intron 30.0%
! TTCGAAGTTGTTATTGGAAT+TGG - Chr3:90192012-90192031 None:intergenic 30.0%
! TTTGTTGCATAGTATTGAGA+AGG + Chr3:90193463-90193482 MsG0380016974.01.T01:intron 30.0%
! TTTTAGACAAGAGGTAAGTT+TGG + Chr3:90194439-90194458 MsG0380016974.01.T01:intron 30.0%
!! AATTTTTGGATACGAAACAG+AGG - Chr3:90194090-90194109 None:intergenic 30.0%
!! ATCTTCAATTTGTTGATGCT+AGG + Chr3:90192193-90192212 MsG0380016974.01.T01:intron 30.0%
!! TAGCATTTCTGGCTATAATA+AGG - Chr3:90194406-90194425 None:intergenic 30.0%
!! TTAAGAGAGATTTTGACAGA+TGG + Chr3:90195671-90195690 MsG0380016974.01.T01:intron 30.0%
!!! AGATAAGCCATTTTTTACAC+AGG + Chr3:90192530-90192549 MsG0380016974.01.T01:CDS 30.0%
!!! ATTTTTTTACCTGATGAGTG+CGG - Chr3:90197514-90197533 None:intergenic 30.0%
!!! CTGTATGTGTTTTAGTTACA+TGG - Chr3:90192750-90192769 None:intergenic 30.0%
!!! CTTTTTCTGGAGTATCATTA+AGG + Chr3:90195512-90195531 MsG0380016974.01.T01:intron 30.0%
!!! TCTAGTTTTTCAAATGGTTC+TGG + Chr3:90194908-90194927 MsG0380016974.01.T01:intron 30.0%
AAAAATAAGCCAGTCCAAGT+AGG + Chr3:90192956-90192975 MsG0380016974.01.T01:intron 35.0%
AAAATACAATGGTGTTCGTG+AGG - Chr3:90198845-90198864 None:intergenic 35.0%
AATGCTGATATCAAGCCAAA+AGG + Chr3:90197116-90197135 MsG0380016974.01.T01:intron 35.0%
ACATGAGGACAAAAGGTTAA+TGG + Chr3:90194883-90194902 MsG0380016974.01.T01:intron 35.0%
AGCTGCATATACAAAGCTAT+TGG + Chr3:90195065-90195084 MsG0380016974.01.T01:intron 35.0%
AGTAACAACTAAACATACCC+TGG + Chr3:90195966-90195985 MsG0380016974.01.T01:intron 35.0%
ATACTGATGAAGAAGGTTTG+TGG + Chr3:90198925-90198944 MsG0380016974.01.T01:CDS 35.0%
ATAGACTATAATGCTCGAGA+AGG + Chr3:90196169-90196188 MsG0380016974.01.T01:CDS 35.0%
ATCAATGCTAAACTCCTCAT+TGG - Chr3:90198244-90198263 None:intergenic 35.0%
CAAATGCTATAAAGTCCTCA+TGG - Chr3:90193447-90193466 None:intergenic 35.0%
CAAGATTACATCGTTCGAAA+CGG + Chr3:90191954-90191973 MsG0380016974.01.T01:CDS 35.0%
CACCATCAATTGAGTCTTTA+AGG + Chr3:90197203-90197222 MsG0380016974.01.T01:intron 35.0%
CCATGACGTATAAATAACCT+GGG - Chr3:90199092-90199111 None:intergenic 35.0%
CCGTCTGTAAGACAAATATT+TGG + Chr3:90193558-90193577 MsG0380016974.01.T01:intron 35.0%
CTAAAAGAGATAACCTTGGT+TGG + Chr3:90195597-90195616 MsG0380016974.01.T01:intron 35.0%
CTGATTCTCTCTATTACTAC+GGG - Chr3:90192982-90193001 None:intergenic 35.0%
CTTTGGTTGCATTCTTTATG+GGG + Chr3:90195647-90195666 MsG0380016974.01.T01:intron 35.0%
GACTAGTGACATAACAATGA+GGG - Chr3:90198474-90198493 None:intergenic 35.0%
GAGGGAAAAGATCTAATGAT+GGG + Chr3:90199228-90199247 MsG0380016974.01.T01:three_prime_UTR 35.0%
GATGCTAGGTTAAAAATCGA+TGG + Chr3:90192207-90192226 MsG0380016974.01.T01:intron 35.0%
GATGCTTTGCAATACTTTGT+AGG + Chr3:90193858-90193877 MsG0380016974.01.T01:intron 35.0%
GATTTAACAGCTCAAACCTA+TGG - Chr3:90193350-90193369 None:intergenic 35.0%
GCATATATGTGTATATACGC+TGG - Chr3:90197864-90197883 None:intergenic 35.0%
GCTTTGGTTGCATTCTTTAT+GGG + Chr3:90195646-90195665 MsG0380016974.01.T01:intron 35.0%
GGATAGTTCAGAAAACAACA+TGG + Chr3:90197224-90197243 MsG0380016974.01.T01:intron 35.0%
GGCATCAACAATTATCTGAA+AGG - Chr3:90196146-90196165 None:intergenic 35.0%
GTACGAAAATCGATAAAGTC+CGG - Chr3:90194319-90194338 None:intergenic 35.0%
GTTATTGGAATTGGAATGTG+TGG - Chr3:90192003-90192022 None:intergenic 35.0%
GTTTGTGGTTACATTGTATG+CGG + Chr3:90198940-90198959 MsG0380016974.01.T01:CDS 35.0%
TAAAGAATTGCATACCCCTT+CGG - Chr3:90198297-90198316 None:intergenic 35.0%
TAAGTATGCAAAATGTGCAC+GGG - Chr3:90194208-90194227 None:intergenic 35.0%
TACGAAAATCGATAAAGTCC+GGG - Chr3:90194318-90194337 None:intergenic 35.0%
TACGTGAATATCTGATTAGG+AGG + Chr3:90193324-90193343 MsG0380016974.01.T01:intron 35.0%
TACTATAGACAGTTAGGCAT+AGG - Chr3:90198408-90198427 None:intergenic 35.0%
TACTTTGTAGGCCTTTATTC+CGG + Chr3:90193870-90193889 MsG0380016974.01.T01:intron 35.0%
TATTTATGCATCTCCAACCA+AGG - Chr3:90195613-90195632 None:intergenic 35.0%
TCAAATAAGCAGCTTAAGTC+TGG - Chr3:90197566-90197585 None:intergenic 35.0%
TCCATGACGTATAAATAACC+TGG - Chr3:90199093-90199112 None:intergenic 35.0%
TCGTATAAATTCCAGACATG+AGG + Chr3:90194868-90194887 MsG0380016974.01.T01:intron 35.0%
TGAATGCATTGCATTTGTCA+AGG + Chr3:90199331-90199350 MsG0380016974.01.T01:three_prime_UTR 35.0%
TGAGGGAAAAGATCTAATGA+TGG + Chr3:90199227-90199246 MsG0380016974.01.T01:three_prime_UTR 35.0%
TGCTAAAAAGATCGACACTA+CGG - Chr3:90197625-90197644 None:intergenic 35.0%
TTACAAACAGTTAGCACATC+TGG - Chr3:90192677-90192696 None:intergenic 35.0%
TTAGTATAGTAACTCATCCG+AGG - Chr3:90195346-90195365 None:intergenic 35.0%
TTCCAACCAAAAAACATTGC+TGG + Chr3:90197698-90197717 MsG0380016974.01.T01:intron 35.0%
TTGACAGATGGTGAATAAGA+TGG + Chr3:90195683-90195702 MsG0380016974.01.T01:intron 35.0%
TTGTTAATTGCAGCCAACAA+TGG - Chr3:90195031-90195050 None:intergenic 35.0%
TTTAGTGATAGATCTGTCTG+AGG - Chr3:90198873-90198892 None:intergenic 35.0%
TTTCGAACGATGTAATCTTG+CGG - Chr3:90191954-90191973 None:intergenic 35.0%
! AAGAAGTGTGCACATATTGT+TGG + Chr3:90195916-90195935 MsG0380016974.01.T01:intron 35.0%
! ACTAATCCGGGTAAATTTTG+TGG - Chr3:90197447-90197466 None:intergenic 35.0%
! AGAAGTGTGCACATATTGTT+GGG + Chr3:90195917-90195936 MsG0380016974.01.T01:intron 35.0%
! CAAAAATTAGGGGTGTACAT+GGG - Chr3:90198553-90198572 None:intergenic 35.0%
! CGGTTAGTTGATTGTTTGTA+TGG + Chr3:90192421-90192440 MsG0380016974.01.T01:intron 35.0%
! CTTCACATTTTCAACTGCTT+CGG - Chr3:90197950-90197969 None:intergenic 35.0%
! GCTGATTCTCTCTATTACTA+CGG - Chr3:90192983-90193002 None:intergenic 35.0%
! GGTAAACTCTGAGAGATTAA+GGG - Chr3:90194268-90194287 None:intergenic 35.0%
! GTATAATGATGTTGGTTGTG+AGG + Chr3:90198425-90198444 MsG0380016974.01.T01:intron 35.0%
! TAAGCTTACATGTGACTTGT+TGG + Chr3:90198761-90198780 MsG0380016974.01.T01:intron 35.0%
! TACAGTTATAATGGAGGTGT+AGG - Chr3:90195227-90195246 None:intergenic 35.0%
! TCAAACCAAGTACTGTTTGA+AGG - Chr3:90195891-90195910 None:intergenic 35.0%
! TGGTAAACTCTGAGAGATTA+AGG - Chr3:90194269-90194288 None:intergenic 35.0%
! TTTCCAGCTACTTTAAACGT+TGG + Chr3:90193642-90193661 MsG0380016974.01.T01:intron 35.0%
!! ATTTGTGACTGATGCTGTTT+TGG + Chr3:90192596-90192615 MsG0380016974.01.T01:intron 35.0%
!! CGAGGATGAGGTATTTTATT+TGG + Chr3:90195320-90195339 MsG0380016974.01.T01:intron 35.0%
!! CTAAAGCTGTGAATTTTAGC+TGG + Chr3:90193988-90194007 MsG0380016974.01.T01:intron 35.0%
!! TAAAGACTCAATTGATGGTG+AGG - Chr3:90197203-90197222 None:intergenic 35.0%
!! TCTGGTTCTGTATGAAGAAT+AGG - Chr3:90192659-90192678 None:intergenic 35.0%
!! TGAGGTATTTTATTTGGCCT+CGG + Chr3:90195326-90195345 MsG0380016974.01.T01:intron 35.0%
!!! AAGGTACCAGCAATGTTTTT+TGG - Chr3:90197707-90197726 None:intergenic 35.0%
!!! GTGAATTTTAGCTGGTACAT+AGG + Chr3:90193996-90194015 MsG0380016974.01.T01:intron 35.0%
!!! TACCAGCAATGTTTTTTGGT+TGG - Chr3:90197703-90197722 None:intergenic 35.0%
!!! TGAGGGTAGATTTTTAGTTG+TGG + Chr3:90198443-90198462 MsG0380016974.01.T01:intron 35.0%
!!! TTTTAGTGTGTTTGGTTCTG+CGG + Chr3:90196619-90196638 MsG0380016974.01.T01:intron 35.0%
!!! TTTTCAAATGGTTCTGGTTG+AGG + Chr3:90194914-90194933 MsG0380016974.01.T01:intron 35.0%
AAACATTGCTGGTACCTTCA+AGG + Chr3:90197709-90197728 MsG0380016974.01.T01:intron 40.0%
AACATTGCTGGTACCTTCAA+GGG + Chr3:90197710-90197729 MsG0380016974.01.T01:intron 40.0%
AAGGTCAGAGACTCTACAAA+AGG + Chr3:90197410-90197429 MsG0380016974.01.T01:intron 40.0%
ACGATGTAATCTTGCGGTAA+AGG - Chr3:90191948-90191967 None:intergenic 40.0%
AGCCAGAAATGCTACAAAAG+CGG + Chr3:90194412-90194431 MsG0380016974.01.T01:CDS 40.0%
AGGTCAGAGACTCTACAAAA+GGG + Chr3:90197411-90197430 MsG0380016974.01.T01:intron 40.0%
AGTACCATTGCTACTAATCC+GGG - Chr3:90197459-90197478 None:intergenic 40.0%
ATAGCTGTCTAAATTGTCGG+TGG - Chr3:90193158-90193177 None:intergenic 40.0%
ATATCTGATTAGGAGGCCAT+AGG + Chr3:90193331-90193350 MsG0380016974.01.T01:intron 40.0%
ATGAATGCCCATATCCTGAT+TGG + Chr3:90198985-90199004 MsG0380016974.01.T01:CDS 40.0%
ATGTAATCTTGCGGTAAAGG+AGG - Chr3:90191945-90191964 None:intergenic 40.0%
ATTCCAGACATGAGGACAAA+AGG + Chr3:90194876-90194895 MsG0380016974.01.T01:intron 40.0%
CCCAGGTTATTTATACGTCA+TGG + Chr3:90199089-90199108 MsG0380016974.01.T01:three_prime_UTR 40.0%
CGACTAGTGACATAACAATG+AGG - Chr3:90198475-90198494 None:intergenic 40.0%
CTAGGTTAAAAATCGATGGG+CGG + Chr3:90192211-90192230 MsG0380016974.01.T01:intron 40.0%
CTGACAACACATTCCTGATT+AGG + Chr3:90197810-90197829 MsG0380016974.01.T01:intron 40.0%
GACTTCGATTACCGGAATAA+AGG - Chr3:90193884-90193903 None:intergenic 40.0%
GAGTACCATTGCTACTAATC+CGG - Chr3:90197460-90197479 None:intergenic 40.0%
GCAGGTGTTTATTGTCACAT+TGG + Chr3:90195766-90195785 MsG0380016974.01.T01:intron 40.0%
GCGATGAATTCGAAGTAGTA+TGG - Chr3:90192091-90192110 None:intergenic 40.0%
GGGATCAACCCAAGTTTATT+AGG - Chr3:90199072-90199091 None:intergenic 40.0%
GGGTCTAAAAGAGATAACCT+TGG + Chr3:90195593-90195612 MsG0380016974.01.T01:intron 40.0%
GTATGGATCTTAGGTTAGTG+CGG + Chr3:90192438-90192457 MsG0380016974.01.T01:intron 40.0%
GTGTACCAACTGTCCAAATT+TGG + Chr3:90198269-90198288 MsG0380016974.01.T01:CDS 40.0%
TAAAATTCAAAGTGGCGGCA+AGG + Chr3:90197337-90197356 MsG0380016974.01.T01:intron 40.0%
TAGGTTAAAAATCGATGGGC+GGG + Chr3:90192212-90192231 MsG0380016974.01.T01:intron 40.0%
TATCGCAAGAACACTGTTGT+TGG + Chr3:90194036-90194055 MsG0380016974.01.T01:intron 40.0%
TCAGAAAACAACATGGGTGT+TGG + Chr3:90197231-90197250 MsG0380016974.01.T01:intron 40.0%
TCTGGCTATAATAAGGAGTC+CGG - Chr3:90194399-90194418 None:intergenic 40.0%
TGAACGCGTATCTACACAAA+AGG - Chr3:90198054-90198073 None:intergenic 40.0%
TGAATGCCCATATCCTGATT+GGG + Chr3:90198986-90199005 MsG0380016974.01.T01:CDS 40.0%
TGAGATGTACAGCATGTCAT+TGG - Chr3:90198103-90198122 None:intergenic 40.0%
TTACATTGTATGCGGTACTC+TGG + Chr3:90198948-90198967 MsG0380016974.01.T01:CDS 40.0%
TTCTTGCGATATTGACCACA+TGG - Chr3:90194027-90194046 None:intergenic 40.0%
TTGAAGCATGTGACCTAATC+AGG - Chr3:90197826-90197845 None:intergenic 40.0%
TTGCCTCCACAAAATTTACC+CGG + Chr3:90197438-90197457 MsG0380016974.01.T01:CDS 40.0%
TTGCTAAATTCAACACAGCC+CGG - Chr3:90196057-90196076 None:intergenic 40.0%
TTTAGTCCCTGCTATAGTGA+GGG + Chr3:90199210-90199229 MsG0380016974.01.T01:three_prime_UTR 40.0%
! AAGAGTGTATGGATATCGTG+TGG + Chr3:90191904-90191923 MsG0380016974.01.T01:CDS 40.0%
! AATCCGGGTAAATTTTGTGG+AGG - Chr3:90197444-90197463 None:intergenic 40.0%
! ACAGCATGTCATTGGCTATT+GGG - Chr3:90198095-90198114 None:intergenic 40.0%
! ATCTTTTCCCTCACTATAGC+AGG - Chr3:90199220-90199239 None:intergenic 40.0%
! CCAAAAATTAGGGGTGTACA+TGG - Chr3:90198554-90198573 None:intergenic 40.0%
! CCATGTACACCCCTAATTTT+TGG + Chr3:90198551-90198570 MsG0380016974.01.T01:intron 40.0%
! GAGAGAAGAGAAAGAGTGTA+TGG + Chr3:90191893-90191912 MsG0380016974.01.T01:CDS 40.0%
! GAGAGTGTGAAACTCTATAC+TGG - Chr3:90197006-90197025 None:intergenic 40.0%
! GGCTTTGGTTGCATTCTTTA+TGG + Chr3:90195645-90195664 MsG0380016974.01.T01:intron 40.0%
! GTGTTATAAGTGCTGCTGAA+TGG - Chr3:90193608-90193627 None:intergenic 40.0%
! TAACCTTTTGTCCTCATGTC+TGG - Chr3:90194882-90194901 None:intergenic 40.0%
! TACAGCATGTCATTGGCTAT+TGG - Chr3:90198096-90198115 None:intergenic 40.0%
! TCTTTTCCCTCACTATAGCA+GGG - Chr3:90199219-90199238 None:intergenic 40.0%
! TTGCCAACGTTTAAAGTAGC+TGG - Chr3:90193648-90193667 None:intergenic 40.0%
! TTTGGACAGTTGGTACACAT+AGG - Chr3:90198267-90198286 None:intergenic 40.0%
!! AATAAACTTGGGTTGATCCC+AGG + Chr3:90199072-90199091 MsG0380016974.01.T01:three_prime_UTR 40.0%
!! ATGGGTGTTGGCTATTGTAT+TGG + Chr3:90197243-90197262 MsG0380016974.01.T01:intron 40.0%
!! GGAGGTGTAGGAAAAAGTTT+TGG - Chr3:90195215-90195234 None:intergenic 40.0%
!! TGTGGAAGGATTCAAGTTGA+CGG + Chr3:90192466-90192485 MsG0380016974.01.T01:CDS 40.0%
!! TTTACCCGGATTAGTAGCAA+TGG + Chr3:90197452-90197471 MsG0380016974.01.T01:CDS 40.0%
!!! ACTGATGCTGTTTTGGTTTC+AGG + Chr3:90192603-90192622 MsG0380016974.01.T01:intron 40.0%
!!! GTTTTTTATCTGAGCTGTGC+AGG + Chr3:90199114-90199133 MsG0380016974.01.T01:three_prime_UTR 40.0%
ACAAGAGGTAAGTTTGGGCT+TGG + Chr3:90194445-90194464 MsG0380016974.01.T01:intron 45.0%
ACATTGCTGGTACCTTCAAG+GGG + Chr3:90197711-90197730 MsG0380016974.01.T01:intron 45.0%
AGCTAAAGTTTCGCCCAATC+AGG - Chr3:90199002-90199021 None:intergenic 45.0%
AGGTTAAAAATCGATGGGCG+GGG + Chr3:90192213-90192232 MsG0380016974.01.T01:intron 45.0%
AGTCCTCATGGTGAGGTATA+CGG - Chr3:90193435-90193454 None:intergenic 45.0%
AGTTTCGCCCAATCAGGATA+TGG - Chr3:90198996-90199015 None:intergenic 45.0%
CAGAGACTCTACAAAAGGGA+AGG + Chr3:90197415-90197434 MsG0380016974.01.T01:CDS 45.0%
CAGCTGAGACAATCATGTCA+AGG - Chr3:90194352-90194371 None:intergenic 45.0%
CCAAAAGGACTATTGCGAGA+AGG + Chr3:90197131-90197150 MsG0380016974.01.T01:intron 45.0%
CGCGTATCTACACAAAAGGT+AGG - Chr3:90198050-90198069 None:intergenic 45.0%
CGCGTTCATTTACAGTCTTC+TGG + Chr3:90198066-90198085 MsG0380016974.01.T01:CDS 45.0%
CTATTAGTTGCCTAAGGGTC+TGG + Chr3:90193924-90193943 MsG0380016974.01.T01:intron 45.0%
CTTTAGTCCCTGCTATAGTG+AGG + Chr3:90199209-90199228 MsG0380016974.01.T01:three_prime_UTR 45.0%
GACTGTTGTGACACATCACT+AGG - Chr3:90197789-90197808 None:intergenic 45.0%
GCATCCTTCAAGCAGAACAT+GGG + Chr3:90194058-90194077 MsG0380016974.01.T01:intron 45.0%
GCTATAAAGTCCTCATGGTG+AGG - Chr3:90193442-90193461 None:intergenic 45.0%
GCTTAAGCATTTGAGCTGTC+TGG + Chr3:90194575-90194594 MsG0380016974.01.T01:intron 45.0%
GGTACATAGGTTCATCCATG+TGG + Chr3:90194009-90194028 MsG0380016974.01.T01:intron 45.0%
GTTTCGCCCAATCAGGATAT+GGG - Chr3:90198995-90199014 None:intergenic 45.0%
TAATAAGGAGTCCGGAGACA+AGG - Chr3:90194391-90194410 None:intergenic 45.0%
TAGGTTAGTGCGGTGAAATG+TGG + Chr3:90192448-90192467 MsG0380016974.01.T01:intron 45.0%
TATGATGTTGCTCGCTAGCT+CGG + Chr3:90192401-90192420 MsG0380016974.01.T01:intron 45.0%
TCAGCATCAAAACCCCTTGA+AGG - Chr3:90197726-90197745 None:intergenic 45.0%
TCATGGTGAGGTATACGGAA+GGG - Chr3:90193430-90193449 None:intergenic 45.0%
TCTATTACTACGGGCCTACT+TGG - Chr3:90192973-90192992 None:intergenic 45.0%
TGGTTGTTACAGATTGAGGC+TGG + Chr3:90195252-90195271 MsG0380016974.01.T01:intron 45.0%
TTAGTGCGGTGAAATGTGGA+AGG + Chr3:90192452-90192471 MsG0380016974.01.T01:CDS 45.0%
! AATTAGGGGTGTACATGGGT+TGG - Chr3:90198549-90198568 None:intergenic 45.0%
! ATTAGGGGTGTACATGGGTT+GGG - Chr3:90198548-90198567 None:intergenic 45.0%
! CCTTCTCGCAATAGTCCTTT+TGG - Chr3:90197134-90197153 None:intergenic 45.0%
! GTTTTATGCGAACCAGTCAC+TGG + Chr3:90197488-90197507 MsG0380016974.01.T01:CDS 45.0%
! TGTCCAAATTTGGCACCGAA+GGG + Chr3:90198279-90198298 MsG0380016974.01.T01:CDS 45.0%
! TTACAAAGCACCAGACCCTT+AGG - Chr3:90193937-90193956 None:intergenic 45.0%
!! GTCCGCTTTTGTAGCATTTC+TGG - Chr3:90194417-90194436 None:intergenic 45.0%
!!! AGCGGACAGTTTTAGACAAG+AGG + Chr3:90194430-90194449 MsG0380016974.01.T01:CDS 45.0%
!! AATTTACTTATTAAAAATAT+TGG - Chr3:90194620-90194639 None:intergenic 5.0%
!!! CTATTTATATTTATATTTTA+TGG + Chr3:90198734-90198753 MsG0380016974.01.T01:intron 5.0%
AAACACATACAGGGCCCGTT+TGG + Chr3:90192758-90192777 MsG0380016974.01.T01:intron 50.0%
ACATCACAAGCCATCACAGG+TGG - Chr3:90192635-90192654 None:intergenic 50.0%
AGTAGTTGGGGAATTTCCCG+AGG + Chr3:90195302-90195321 MsG0380016974.01.T01:CDS 50.0%
AGTTGACGGTGAAATCGTGC+CGG + Chr3:90192480-90192499 MsG0380016974.01.T01:CDS 50.0%
AGTTTGGGCTTGGACTTGTC+TGG + Chr3:90194455-90194474 MsG0380016974.01.T01:intron 50.0%
ATACGCTGGGATAGCATGAC+TGG - Chr3:90197850-90197869 None:intergenic 50.0%
CTCATGGTGAGGTATACGGA+AGG - Chr3:90193431-90193450 None:intergenic 50.0%
CTTCCGTATACCTCACCATG+AGG + Chr3:90193429-90193448 MsG0380016974.01.T01:intron 50.0%
GGAACATCACAAGCCATCAC+AGG - Chr3:90192638-90192657 None:intergenic 50.0%
GGCATCCTTCAAGCAGAACA+TGG + Chr3:90194057-90194076 MsG0380016974.01.T01:intron 50.0%
GGGCATTCATATGTCCATCC+AGG - Chr3:90198975-90198994 None:intergenic 50.0%
TAACTGCCATGCCTTCGCAT+TGG + Chr3:90193535-90193554 MsG0380016974.01.T01:intron 50.0%
TGAGGCAGAGTAGAAACCAC+TGG - Chr3:90198827-90198846 None:intergenic 50.0%
TGCGGTAAAGGAGGATTTGC+TGG - Chr3:90191936-90191955 None:intergenic 50.0%
TTACTTACCGGGACAGATGC+AGG - Chr3:90192701-90192720 None:intergenic 50.0%
TTGTAAGCCTGCATCTGTCC+CGG + Chr3:90192691-90192710 MsG0380016974.01.T01:CDS 50.0%
! AGAAGGAAGAAGCACAGCAG+AGG + Chr3:90196186-90196205 MsG0380016974.01.T01:CDS 50.0%
! CGGTGCCAAATTTGGACAGT+TGG - Chr3:90198277-90198296 None:intergenic 50.0%
! CTGAGCTGTTGCCATTTGCA+TGG + Chr3:90197742-90197761 MsG0380016974.01.T01:intron 50.0%
! CTGTCCAAATTTGGCACCGA+AGG + Chr3:90198278-90198297 MsG0380016974.01.T01:CDS 50.0%
! GTCCAAATTTGGCACCGAAG+GGG + Chr3:90198280-90198299 MsG0380016974.01.T01:CDS 50.0%
!! TACCCCTTCGGTGCCAAATT+TGG - Chr3:90198285-90198304 None:intergenic 50.0%
AGACAAGGCGATCCAGTCGA+TGG - Chr3:90194376-90194395 None:intergenic 55.0%
ATTCAAAGTGGCGGCAAGGC+AGG + Chr3:90197341-90197360 MsG0380016974.01.T01:intron 55.0%
CAGGCATGAACCACCTGTGA+TGG + Chr3:90192622-90192641 MsG0380016974.01.T01:intron 55.0%
CATACAGGGCCCGTTTGGAT+TGG + Chr3:90192763-90192782 MsG0380016974.01.T01:intron 55.0%
CCAGCCCATGTTCTGCTTGA+AGG - Chr3:90194065-90194084 None:intergenic 55.0%
CCTTCAAGCAGAACATGGGC+TGG + Chr3:90194062-90194081 MsG0380016974.01.T01:intron 55.0%
CTTACAGACGGCCAATGCGA+AGG - Chr3:90193549-90193568 None:intergenic 55.0%
GCAATAGGATGGGCATGTGC+AGG + Chr3:90195748-90195767 MsG0380016974.01.T01:intron 55.0%
TACTACGGGCCTACTTGGAC+TGG - Chr3:90192968-90192987 None:intergenic 55.0%
TGGGGAATTTCCCGAGGATG+AGG + Chr3:90195308-90195327 MsG0380016974.01.T01:CDS 55.0%
TGTATGCGGTACTCTGGACC+TGG + Chr3:90198954-90198973 MsG0380016974.01.T01:CDS 55.0%
TGTCTCAGCTGTCCATCGAC+TGG + Chr3:90194361-90194380 MsG0380016974.01.T01:intron 55.0%
! GAAGAAGCACAGCAGAGGTG+AGG + Chr3:90196191-90196210 MsG0380016974.01.T01:intron 55.0%
! TGATGGTGAGGACACCCAAG+AGG - Chr3:90197191-90197210 None:intergenic 55.0%
AGACGGCCAATGCGAAGGCA+TGG - Chr3:90193544-90193563 None:intergenic 60.0%
AGCTGTGCAGGTTAGCGAGC+AGG + Chr3:90199126-90199145 MsG0380016974.01.T01:three_prime_UTR 60.0%
AGTCACTGGCCGCACTCATC+AGG + Chr3:90197502-90197521 MsG0380016974.01.T01:CDS 60.0%
CACAGCAGAGGTGAGGCCTT+TGG + Chr3:90196198-90196217 MsG0380016974.01.T01:intron 60.0%
CGACTGGATCGCCTTGTCTC+CGG + Chr3:90194377-90194396 MsG0380016974.01.T01:CDS 60.0%
GAATGGCTGCTCGTGGCACT+TGG - Chr3:90193591-90193610 None:intergenic 60.0%
TGATGAGTGCGGCCAGTGAC+TGG - Chr3:90197503-90197522 None:intergenic 60.0%
TGCGGTACTCTGGACCTGGA+TGG + Chr3:90198958-90198977 MsG0380016974.01.T01:CDS 60.0%
TGCTGCTGAATGGCTGCTCG+TGG - Chr3:90193598-90193617 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr3 gene 90191860 90199353 90191860 ID=MsG0380016974.01;Name=MsG0380016974.01
Chr3 mRNA 90191860 90199353 90191860 ID=MsG0380016974.01.T01;Parent=MsG0380016974.01;Name=MsG0380016974.01.T01;_AED=0.41;_eAED=0.41;_QI=22|0.9|0.90|1|1|1|11|334|354
Chr3 exon 90191860 90191975 90191860 ID=MsG0380016974.01.T01:exon:30800;Parent=MsG0380016974.01.T01
Chr3 exon 90192071 90192114 90192071 ID=MsG0380016974.01.T01:exon:30801;Parent=MsG0380016974.01.T01
Chr3 exon 90192215 90192292 90192215 ID=MsG0380016974.01.T01:exon:30802;Parent=MsG0380016974.01.T01
Chr3 exon 90192451 90192551 90192451 ID=MsG0380016974.01.T01:exon:30803;Parent=MsG0380016974.01.T01
Chr3 exon 90192625 90192716 90192625 ID=MsG0380016974.01.T01:exon:30804;Parent=MsG0380016974.01.T01
Chr3 exon 90194369 90194451 90194369 ID=MsG0380016974.01.T01:exon:30805;Parent=MsG0380016974.01.T01
Chr3 exon 90195264 90195329 90195264 ID=MsG0380016974.01.T01:exon:30806;Parent=MsG0380016974.01.T01
Chr3 exon 90196151 90196207 90196151 ID=MsG0380016974.01.T01:exon:30807;Parent=MsG0380016974.01.T01
Chr3 exon 90197413 90197523 90197413 ID=MsG0380016974.01.T01:exon:30808;Parent=MsG0380016974.01.T01
Chr3 exon 90198063 90198301 90198063 ID=MsG0380016974.01.T01:exon:30809;Parent=MsG0380016974.01.T01
Chr3 exon 90198920 90199353 90198920 ID=MsG0380016974.01.T01:exon:30810;Parent=MsG0380016974.01.T01
Chr3 five_prime_UTR 90191860 90191881 90191860 ID=MsG0380016974.01.T01:five_prime_utr;Parent=MsG0380016974.01.T01
Chr3 CDS 90191882 90191975 90191882 ID=MsG0380016974.01.T01:cds;Parent=MsG0380016974.01.T01
Chr3 CDS 90192071 90192114 90192071 ID=MsG0380016974.01.T01:cds;Parent=MsG0380016974.01.T01
Chr3 CDS 90192215 90192292 90192215 ID=MsG0380016974.01.T01:cds;Parent=MsG0380016974.01.T01
Chr3 CDS 90192451 90192551 90192451 ID=MsG0380016974.01.T01:cds;Parent=MsG0380016974.01.T01
Chr3 CDS 90192625 90192716 90192625 ID=MsG0380016974.01.T01:cds;Parent=MsG0380016974.01.T01
Chr3 CDS 90194369 90194451 90194369 ID=MsG0380016974.01.T01:cds;Parent=MsG0380016974.01.T01
Chr3 CDS 90195264 90195329 90195264 ID=MsG0380016974.01.T01:cds;Parent=MsG0380016974.01.T01
Chr3 CDS 90196151 90196207 90196151 ID=MsG0380016974.01.T01:cds;Parent=MsG0380016974.01.T01
Chr3 CDS 90197413 90197523 90197413 ID=MsG0380016974.01.T01:cds;Parent=MsG0380016974.01.T01
Chr3 CDS 90198063 90198301 90198063 ID=MsG0380016974.01.T01:cds;Parent=MsG0380016974.01.T01
Chr3 CDS 90198920 90199019 90198920 ID=MsG0380016974.01.T01:cds;Parent=MsG0380016974.01.T01
Chr3 three_prime_UTR 90199020 90199353 90199020 ID=MsG0380016974.01.T01:three_prime_utr;Parent=MsG0380016974.01.T01
Gene Sequence

>MsG0380016974.01.T01

ATGAAGAGAAAGAGAGAAGAGAAAGAGTGTATGGATATCGTGTGGCAAACTCCAGCAAATCCTCCTTTACCGCAAGATTACATCGTTCGAAACGGAATTCGATTTGTTAGACCATACTACTTCGAATTCATCGCTCATGTTAAAAATCGATGGGCGGGGAAAACTATTGTAGATTTATTCGCTGAGGAATTTAAAGGTCGACCTTATGAATATTATGTTAGTGCGGTGAAATGTGGAAGGATTCAAGTTGACGGTGAAATCGTGCCGGTTTCATACGTAGTTAAATCATCTCAAAAGATAAGCCATTTTTTACACAGGCATGAACCACCTGTGATGGCTTGTGATGTTCCTATTCTTCATACAGAACCAGATGTGCTAACTGTTTGTAAGCCTGCATCTGTCCCGGTAACTGTCCATCGACTGGATCGCCTTGTCTCCGGACTCCTTATTATAGCCAGAAATGCTACAAAAGCGGACAGTTTTAGACAAGAGATTGAGGCTGGCTTAGTCAAGAAACAATATATTGCAAAAGTAGTTGGGGAATTTCCCGAGGATGAGATAATTGTTGATGCCAATATAGACTATAATGCTCGAGAAGGAAGAAGCACAGCAGAGGTCAGAGACTCTACAAAAGGGAAGGTTGCCTCCACAAAATTTACCCGGATTAGTAGCAATGGTACTCATAGTATTGTTTTATGCGAACCAGTCACTGGCCGCACTCATCAGATACGCGTTCATTTACAGTCTTCTGGACACCCAATAGCCAATGACATGCTGTACATCTCAGAGCAGACTGTTGATAGATCTATTAATGGGTCAACTGCTGATAGATCAGCTCGCATATCTGATGCTTCTTTGACATCAAATTTCGGTGAAAAAGTGCCCAAAGATTGTCAAGAAAATTCCAATGAGGAGTTTAGCATTGATCCTATGTGTACCAACTGTCCAAATTTGGCACCGAAGGGATATGATACTGATGAAGAAGGTTTGTGGTTACATTGTATGCGGTACTCTGGACCTGGATGGACATATGAATGCCCATATCCTGATTGGGCGAAACTTTAG
Protein sequence

>MsG0380016974.01.T01

MKRKREEKECMDIVWQTPANPPLPQDYIVRNGIRFVRPYYFEFIAHVKNRWAGKTIVDLFAEEFKGRPYEYYVSAVKCGRIQVDGEIVPVSYVVKSSQKISHFLHRHEPPVMACDVPILHTEPDVLTVCKPASVPVTVHRLDRLVSGLLIIARNATKADSFRQEIEAGLVKKQYIAKVVGEFPEDEIIVDANIDYNAREGRSTAEVRDSTKGKVASTKFTRISSNGTHSIVLCEPVTGRTHQIRVHLQSSGHPIANDMLYISEQTVDRSINGSTADRSARISDASLTSNFGEKVPKDCQENSNEEFSIDPMCTNCPNLAPKGYDTDEEGLWLHCMRYSGPGWTYECPYPDWAKL*