AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580025421.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580025421.01.T01 MTR_5g028350 98.270 289 5 0 17 305 1 289 0.0 572
MsG0580025421.01.T01 MTR_8g075400 76.897 290 36 4 17 305 14 273 4.14e-138 392
MsG0580025421.01.T01 MTR_8g075400 87.946 224 25 1 17 240 1 222 1.90e-128 367
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580025421.01.T01 AT3G22660 64.430 298 95 5 15 306 1 293 1.46e-125 360

Find 82 sgRNAs with CRISPR-Local

Find 127 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCGGCCTCCAAAACCAAATT+TGG 0.189093 5:+18339088 None:intergenic
GCTGAAACAACTAATGATTT+TGG 0.204488 5:-18339041 MsG0580025421.01.T01:CDS
GATACTAAGAATGCCAAATT+TGG 0.209577 5:-18339101 MsG0580025421.01.T01:CDS
GTTAAGTTGATAAACTTTAT+TGG 0.245084 5:-18338884 MsG0580025421.01.T01:three_prime_UTR
CAACTTAACATGATCTAAAT+AGG 0.260023 5:+18338898 None:intergenic
AAGAATGCCAAATTTGGTTT+TGG 0.274042 5:-18339095 MsG0580025421.01.T01:CDS
GTTTAACAAAGCATCAAAAT+TGG 0.274732 5:+18338835 None:intergenic
ACCTAGCTTACAACCTTTAG+TGG 0.292037 5:+18340224 None:intergenic
TCAAAGCTCAAAGACTTATC+TGG 0.326167 5:+18339242 None:intergenic
AGAAAGGGCCAAGCAGAAAA+AGG 0.351345 5:-18339336 MsG0580025421.01.T01:CDS
TCAGTTTCATCGTCAATCAT+TGG 0.361449 5:+18339815 None:intergenic
TCTGCTTCTTCGATCCCTTC+CGG 0.371874 5:+18339069 None:intergenic
TGCTTCCAATCCACATTCTC+AGG 0.372391 5:+18339665 None:intergenic
TGACGATGAAACTGAAGATT+TGG 0.372516 5:-18339807 MsG0580025421.01.T01:CDS
GATTGAAATGGAGGTGCCTT+TGG 0.375124 5:-18339849 MsG0580025421.01.T01:CDS
TTCAGTAAGGGTTCTGCTGC+TGG 0.381325 5:-18339014 MsG0580025421.01.T01:CDS
TTACCTCCTGACCGATCTCC+TGG 0.396701 5:+18339170 None:intergenic
AGACAATCTCTTTGCTTCCC+TGG 0.401049 5:+18339385 None:intergenic
AGATAAGTCTTTGAGCTTTG+AGG 0.404345 5:-18339240 MsG0580025421.01.T01:CDS
CTGAAGAGAGAAGAAAGGCC+AGG 0.422247 5:-18339403 MsG0580025421.01.T01:CDS
CTCTCCATTGATATTGATCA+AGG 0.434506 5:-18339638 MsG0580025421.01.T01:CDS
GGTATTTGTATAGATTGAAA+TGG 0.441908 5:-18339861 MsG0580025421.01.T01:intron
AGTCACAGAAATTGAAAGAA+AGG 0.458750 5:-18339352 MsG0580025421.01.T01:CDS
AATGCGGCTATGGCACAATC+TGG 0.459141 5:-18338952 MsG0580025421.01.T01:three_prime_UTR
ATGGAGGTGCCTTTGGTTAA+CGG 0.462087 5:-18339842 MsG0580025421.01.T01:CDS
GAAAAGGGAGATTCCACTAA+AGG 0.464425 5:-18340237 MsG0580025421.01.T01:CDS
CTTGTCATGGAATGCGGCTA+TGG 0.473984 5:-18338962 MsG0580025421.01.T01:three_prime_UTR
TAGTCAGCAGGTCTCAAGAA+AGG 0.478435 5:+18339509 None:intergenic
CTTTGAGAAGCTTGAGTCGA+TGG 0.481104 5:-18339537 MsG0580025421.01.T01:CDS
TTGCCCTTGATCAATATCAA+TGG 0.482007 5:+18339634 None:intergenic
TGCTGACTATTACGCAGAAA+TGG 0.488469 5:-18339495 MsG0580025421.01.T01:CDS
CCGATCTCCTGGAGATACTC+CGG 0.494759 5:+18339181 None:intergenic
AGGAGATCGGTCAGGAGGTA+AGG 0.497659 5:-18339168 MsG0580025421.01.T01:CDS
AGTCTTTGAGCTTTGAGGAT+GGG 0.501140 5:-18339235 MsG0580025421.01.T01:CDS
AGTCAGCAGGTCTCAAGAAA+GGG 0.501463 5:+18339510 None:intergenic
GGGAGATAGCCACATGGAAA+AGG 0.502899 5:-18339468 MsG0580025421.01.T01:CDS
CATAAGCTGGCCTGAGAATG+TGG 0.503617 5:-18339675 MsG0580025421.01.T01:CDS
TCTTCTGAATCTGATTCAAA+CGG 0.503965 5:+18339770 None:intergenic
GTCACAGAAATTGAAAGAAA+GGG 0.504083 5:-18339351 MsG0580025421.01.T01:CDS
GCAAAGCAAGCTATGGGAAA+GGG 0.507585 5:-18339146 MsG0580025421.01.T01:CDS
ATTAGATGAGAAGCGGAAGA+TGG 0.510158 5:-18339432 MsG0580025421.01.T01:CDS
GGCATTGGAGGGAACTAGAC+AGG 0.514311 5:-18339561 MsG0580025421.01.T01:CDS
AGGTAAGGCAAAGCAAGCTA+TGG 0.517763 5:-18339153 MsG0580025421.01.T01:CDS
TTTGAGAAGCTTGAGTCGAT+GGG 0.525398 5:-18339536 MsG0580025421.01.T01:CDS
GGAGGCTGAAGAGAGAAGAA+AGG 0.530598 5:-18339408 MsG0580025421.01.T01:CDS
CAAAGACTTATCTGGAGCAT+CGG 0.536868 5:+18339250 None:intergenic
AGATGAGAAGCGGAAGATGG+AGG 0.539024 5:-18339429 MsG0580025421.01.T01:CDS
GATGCTATATTAGATAAACT+TGG 0.546950 5:-18339701 MsG0580025421.01.T01:CDS
TGAAACTGAAGATTTGGATG+AGG 0.549051 5:-18339801 MsG0580025421.01.T01:CDS
AGCAAAGAGATTGTCTAAAG+AGG 0.557828 5:-18339378 MsG0580025421.01.T01:CDS
AAGAGGCCCGGAGTATCTCC+AGG 0.558097 5:-18339188 MsG0580025421.01.T01:CDS
GTATCTCCAGGAGATCGGTC+AGG 0.562327 5:-18339176 MsG0580025421.01.T01:CDS
CGATCTCCTGGAGATACTCC+GGG 0.563080 5:+18339182 None:intergenic
ATTTCTGCGTAATAGTCAGC+AGG 0.568461 5:+18339497 None:intergenic
TGTCTCTACTAACACAGGCT+TGG 0.570044 5:+18338757 None:intergenic
ATAAACTTGGAGACATAAGC+TGG 0.571619 5:-18339688 MsG0580025421.01.T01:CDS
CCGGAGTATCTCCAGGAGAT+CGG 0.576336 5:-18339181 MsG0580025421.01.T01:CDS
AAGTCTTTGAGCTTTGAGGA+TGG 0.577328 5:-18339236 MsG0580025421.01.T01:CDS
AGTAGATGTGAACGATGACT+TGG 0.577868 5:-18339609 MsG0580025421.01.T01:CDS
TGAAGAGAGAAGAAAGGCCA+GGG 0.579670 5:-18339402 MsG0580025421.01.T01:CDS
CAACAGAGTGGGTTTGCTGA+TGG 0.580952 5:-18339275 MsG0580025421.01.T01:CDS
CATCGACTCAAGCTTCTCAA+AGG 0.582387 5:+18339538 None:intergenic
GGCAAAGCAAGCTATGGGAA+AGG 0.584114 5:-18339147 MsG0580025421.01.T01:CDS
GGTAAGGCAAAGCAAGCTAT+GGG 0.598074 5:-18339152 MsG0580025421.01.T01:CDS
GGAAGCAGAGACAACAGAGT+GGG 0.599709 5:-18339286 MsG0580025421.01.T01:CDS
ACATTGAATCTGTTAAGAAG+TGG 0.600860 5:-18339310 MsG0580025421.01.T01:CDS
TGAGAAGCGGAAGATGGAGG+AGG 0.603783 5:-18339426 MsG0580025421.01.T01:CDS
TTGAATCTGTTAAGAAGTGG+AGG 0.608378 5:-18339307 MsG0580025421.01.T01:CDS
CTATTACGCAGAAATGGTGA+AGG 0.608653 5:-18339489 MsG0580025421.01.T01:CDS
GTCGGCTATTAGATGAGAAG+CGG 0.609331 5:-18339439 MsG0580025421.01.T01:CDS
TATAATCTTGTCATGGAATG+CGG 0.609594 5:-18338968 MsG0580025421.01.T01:three_prime_UTR
GCTGGCCTGAGAATGTGGAT+TGG 0.611875 5:-18339670 MsG0580025421.01.T01:CDS
AGATAAATATAATCTTGTCA+TGG 0.612710 5:-18338975 MsG0580025421.01.T01:exon
ATTTGTATAGATTGAAATGG+AGG 0.615579 5:-18339858 MsG0580025421.01.T01:intron
ACATGGAAAAGGTGAAAAGT+CGG 0.619320 5:-18339457 MsG0580025421.01.T01:CDS
TCTCCATTGATATTGATCAA+GGG 0.625695 5:-18339637 MsG0580025421.01.T01:CDS
AGATATGTCTCTACTAACAC+AGG 0.644101 5:+18338752 None:intergenic
AGGAAGCAGAGACAACAGAG+TGG 0.651328 5:-18339287 MsG0580025421.01.T01:CDS
TCTCCAGGAGATCGGTCAGG+AGG 0.664692 5:-18339173 MsG0580025421.01.T01:CDS
ATTGGATCACCGTTAACCAA+AGG 0.669243 5:+18339833 None:intergenic
TATTACGCAGAAATGGTGAA+GGG 0.681147 5:-18339488 MsG0580025421.01.T01:CDS
GGTGAAGGGAGATAGCCACA+TGG 0.757517 5:-18339474 MsG0580025421.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAACACAAATAATTAAA+GGG + Chr5:18338845-18338864 None:intergenic 10.0%
!! CAATTAACACAAATAATTAA+AGG + Chr5:18338846-18338865 None:intergenic 15.0%
!!! AAAAATAAATATCCATTTTC+CGG + Chr5:18338884-18338903 None:intergenic 15.0%
!!! AGAAAAATAATTGTTTTGTA+AGG - Chr5:18339031-18339050 MsG0580025421.01.T01:CDS 15.0%
!!! ATGATTTGTTTTACTTTATT+TGG - Chr5:18339078-18339097 MsG0580025421.01.T01:CDS 15.0%
!! AGATAAATATAATCTTGTCA+TGG - Chr5:18339985-18340004 MsG0580025421.01.T01:intron 20.0%
!!! AGAATTTTAATCAAATCTGT+AGG - Chr5:18340031-18340050 MsG0580025421.01.T01:intron 20.0%
!!! GTTAAGTTGATAAACTTTAT+TGG - Chr5:18340076-18340095 MsG0580025421.01.T01:intron 20.0%
! ATTGTAAACCTAATATGTTC+CGG - Chr5:18338862-18338881 MsG0580025421.01.T01:three_prime_UTR 25.0%
! ATTTGTATAGATTGAAATGG+AGG - Chr5:18339102-18339121 MsG0580025421.01.T01:CDS 25.0%
! CAACTTAACATGATCTAAAT+AGG + Chr5:18340065-18340084 None:intergenic 25.0%
! GATGCTATATTAGATAAACT+TGG - Chr5:18339259-18339278 MsG0580025421.01.T01:CDS 25.0%
! GGTATTTGTATAGATTGAAA+TGG - Chr5:18339099-18339118 MsG0580025421.01.T01:CDS 25.0%
!! GTTTAACAAAGCATCAAAAT+TGG + Chr5:18340128-18340147 None:intergenic 25.0%
!! TTAGTATCTCTTTTCTTTTG+CGG + Chr5:18339847-18339866 None:intergenic 25.0%
ACATTGAATCTGTTAAGAAG+TGG - Chr5:18339650-18339669 MsG0580025421.01.T01:CDS 30.0%
AGTCACAGAAATTGAAAGAA+AGG - Chr5:18339608-18339627 MsG0580025421.01.T01:CDS 30.0%
GAGTCAAATAAACCACTATA+CGG + Chr5:18338918-18338937 None:intergenic 30.0%
GATACTAAGAATGCCAAATT+TGG - Chr5:18339859-18339878 MsG0580025421.01.T01:intron 30.0%
GTCACAGAAATTGAAAGAAA+GGG - Chr5:18339609-18339628 MsG0580025421.01.T01:CDS 30.0%
TATAATCTTGTCATGGAATG+CGG - Chr5:18339992-18340011 MsG0580025421.01.T01:intron 30.0%
TCTCCATTGATATTGATCAA+GGG - Chr5:18339323-18339342 MsG0580025421.01.T01:CDS 30.0%
TCTTCTGAATCTGATTCAAA+CGG + Chr5:18339193-18339212 None:intergenic 30.0%
! GAAACAACTAATGATTTTGG+CGG - Chr5:18339922-18339941 MsG0580025421.01.T01:intron 30.0%
! GCTGAAACAACTAATGATTT+TGG - Chr5:18339919-18339938 MsG0580025421.01.T01:intron 30.0%
!! AAACAACTAATGATTTTGGC+GGG - Chr5:18339923-18339942 MsG0580025421.01.T01:intron 30.0%
!! AAGAATGCCAAATTTGGTTT+TGG - Chr5:18339865-18339884 MsG0580025421.01.T01:intron 30.0%
!!! TTATTCACTGCAGTTTTAGA+TGG + Chr5:18339235-18339254 None:intergenic 30.0%
ACATGGAAAAGGTGAAAAGT+CGG - Chr5:18339503-18339522 MsG0580025421.01.T01:CDS 35.0%
ACCTAATATGTTCCGGAAAA+TGG - Chr5:18338869-18338888 MsG0580025421.01.T01:three_prime_UTR 35.0%
AGATAAGTCTTTGAGCTTTG+AGG - Chr5:18339720-18339739 MsG0580025421.01.T01:CDS 35.0%
AGATATGTCTCTACTAACAC+AGG + Chr5:18340211-18340230 None:intergenic 35.0%
AGCAAAGAGATTGTCTAAAG+AGG - Chr5:18339582-18339601 MsG0580025421.01.T01:CDS 35.0%
ATAAACTTGGAGACATAAGC+TGG - Chr5:18339272-18339291 MsG0580025421.01.T01:CDS 35.0%
CTCTCCATTGATATTGATCA+AGG - Chr5:18339322-18339341 MsG0580025421.01.T01:CDS 35.0%
GATACATCACACTGATAACA+TGG - Chr5:18338784-18338803 MsG0580025421.01.T01:three_prime_UTR 35.0%
GGGAAAAATGTGGTTGAAAA+GGG - Chr5:18338708-18338727 MsG0580025421.01.T01:three_prime_UTR 35.0%
TAAAATATTCCCAAGCCAGT+AGG + Chr5:18338990-18339009 None:intergenic 35.0%
TATTACGCAGAAATGGTGAA+GGG - Chr5:18339472-18339491 MsG0580025421.01.T01:CDS 35.0%
TCAAAGCTCAAAGACTTATC+TGG + Chr5:18339721-18339740 None:intergenic 35.0%
TCAGTTTCATCGTCAATCAT+TGG + Chr5:18339148-18339167 None:intergenic 35.0%
TCGAGAGATCAAAGAAAAAG+AGG - Chr5:18339755-18339774 MsG0580025421.01.T01:CDS 35.0%
TGAAACTGAAGATTTGGATG+AGG - Chr5:18339159-18339178 MsG0580025421.01.T01:CDS 35.0%
TGACGATGAAACTGAAGATT+TGG - Chr5:18339153-18339172 MsG0580025421.01.T01:CDS 35.0%
TGGGAAAAATGTGGTTGAAA+AGG - Chr5:18338707-18338726 MsG0580025421.01.T01:three_prime_UTR 35.0%
TTGAATCTGTTAAGAAGTGG+AGG - Chr5:18339653-18339672 MsG0580025421.01.T01:CDS 35.0%
TTGCCCTTGATCAATATCAA+TGG + Chr5:18339329-18339348 None:intergenic 35.0%
! AATGTCATCCTTTTTCTGCT+TGG + Chr5:18339635-18339654 None:intergenic 35.0%
! TCCATTTTCCGGAACATATT+AGG + Chr5:18338873-18338892 None:intergenic 35.0%
!!! AATGCCAAATTTGGTTTTGG+AGG - Chr5:18339868-18339887 MsG0580025421.01.T01:intron 35.0%
ACCTAGCTTACAACCTTTAG+TGG + Chr5:18338739-18338758 None:intergenic 40.0%
AGATCAAAGAAAAAGAGGCC+CGG - Chr5:18339760-18339779 MsG0580025421.01.T01:CDS 40.0%
AGTAGATGTGAACGATGACT+TGG - Chr5:18339351-18339370 MsG0580025421.01.T01:CDS 40.0%
ATTAGATGAGAAGCGGAAGA+TGG - Chr5:18339528-18339547 MsG0580025421.01.T01:CDS 40.0%
ATTGGATCACCGTTAACCAA+AGG + Chr5:18339130-18339149 None:intergenic 40.0%
ATTTCTGCGTAATAGTCAGC+AGG + Chr5:18339466-18339485 None:intergenic 40.0%
CTATTACGCAGAAATGGTGA+AGG - Chr5:18339471-18339490 MsG0580025421.01.T01:CDS 40.0%
GAAAAGGGAGATTCCACTAA+AGG - Chr5:18338723-18338742 MsG0580025421.01.T01:three_prime_UTR 40.0%
TATCAGTGTGATGTATCCAC+CGG + Chr5:18338781-18338800 None:intergenic 40.0%
TCCACTAAAGGTTGTAAGCT+AGG - Chr5:18338735-18338754 MsG0580025421.01.T01:three_prime_UTR 40.0%
TTTGAGAAGCTTGAGTCGAT+GGG - Chr5:18339424-18339443 MsG0580025421.01.T01:CDS 40.0%
! AGGTTGTAAGCTAGGTTTTC+CGG - Chr5:18338743-18338762 MsG0580025421.01.T01:three_prime_UTR 40.0%
! CAAAGACTTATCTGGAGCAT+CGG + Chr5:18339713-18339732 None:intergenic 40.0%
! GACTTTTCACCTTTTCCATG+TGG + Chr5:18339504-18339523 None:intergenic 40.0%
! TGCTGACTATTACGCAGAAA+TGG - Chr5:18339465-18339484 MsG0580025421.01.T01:CDS 40.0%
!! AAGTCTTTGAGCTTTGAGGA+TGG - Chr5:18339724-18339743 MsG0580025421.01.T01:CDS 40.0%
!! AGTCTTTGAGCTTTGAGGAT+GGG - Chr5:18339725-18339744 MsG0580025421.01.T01:CDS 40.0%
AATATTCCCAAGCCAGTAGG+TGG + Chr5:18338987-18339006 None:intergenic 45.0%
AGAAAGGGCCAAGCAGAAAA+AGG - Chr5:18339624-18339643 MsG0580025421.01.T01:CDS 45.0%
AGACAATCTCTTTGCTTCCC+TGG + Chr5:18339578-18339597 None:intergenic 45.0%
AGGTAAGGCAAAGCAAGCTA+TGG - Chr5:18339807-18339826 MsG0580025421.01.T01:CDS 45.0%
AGTCAGCAGGTCTCAAGAAA+GGG + Chr5:18339453-18339472 None:intergenic 45.0%
GCAAAGCAAGCTATGGGAAA+GGG - Chr5:18339814-18339833 MsG0580025421.01.T01:CDS 45.0%
GGTAAGGCAAAGCAAGCTAT+GGG - Chr5:18339808-18339827 MsG0580025421.01.T01:CDS 45.0%
GTCGGCTATTAGATGAGAAG+CGG - Chr5:18339521-18339540 MsG0580025421.01.T01:CDS 45.0%
TAGTCAGCAGGTCTCAAGAA+AGG + Chr5:18339454-18339473 None:intergenic 45.0%
TGAAGAGAGAAGAAAGGCCA+GGG - Chr5:18339558-18339577 MsG0580025421.01.T01:CDS 45.0%
TGCTTCCAATCCACATTCTC+AGG + Chr5:18339298-18339317 None:intergenic 45.0%
TGTCTCTACTAACACAGGCT+TGG + Chr5:18340206-18340225 None:intergenic 45.0%
TGTGCTCTGTATCCGTATAG+TGG - Chr5:18338903-18338922 MsG0580025421.01.T01:three_prime_UTR 45.0%
! ATCGTTTTACACGCAGGCAT+TGG - Chr5:18339384-18339403 MsG0580025421.01.T01:CDS 45.0%
! CTTTGAGAAGCTTGAGTCGA+TGG - Chr5:18339423-18339442 MsG0580025421.01.T01:CDS 45.0%
! TGAGCTATCGTTTTACACGC+AGG - Chr5:18339378-18339397 MsG0580025421.01.T01:CDS 45.0%
!! ATGGAGGTGCCTTTGGTTAA+CGG - Chr5:18339118-18339137 MsG0580025421.01.T01:CDS 45.0%
!! CATCGACTCAAGCTTCTCAA+AGG + Chr5:18339425-18339444 None:intergenic 45.0%
!! GATTGAAATGGAGGTGCCTT+TGG - Chr5:18339111-18339130 MsG0580025421.01.T01:CDS 45.0%
!! TATTCTCCACCTACTGGCTT+GGG - Chr5:18338978-18338997 MsG0580025421.01.T01:exon 45.0%
!!! CCAAATTTGGTTTTGGAGGC+CGG - Chr5:18339872-18339891 MsG0580025421.01.T01:intron 45.0%
!!! GATTTTGGCGGGTTCAGTAA+GGG - Chr5:18339934-18339953 MsG0580025421.01.T01:intron 45.0%
!!! TGATTTTGGCGGGTTCAGTA+AGG - Chr5:18339933-18339952 MsG0580025421.01.T01:intron 45.0%
!!! TTTTACACGCAGGCATTGGA+GGG - Chr5:18339388-18339407 MsG0580025421.01.T01:CDS 45.0%
AATGCGGCTATGGCACAATC+TGG - Chr5:18340008-18340027 MsG0580025421.01.T01:intron 50.0%
AGATGAGAAGCGGAAGATGG+AGG - Chr5:18339531-18339550 MsG0580025421.01.T01:CDS 50.0%
AGGAAGCAGAGACAACAGAG+TGG - Chr5:18339673-18339692 MsG0580025421.01.T01:CDS 50.0%
CAAGCCAGTAGGTGGAGAAT+AGG + Chr5:18338979-18338998 None:intergenic 50.0%
CCGGCCTCCAAAACCAAATT+TGG + Chr5:18339875-18339894 None:intergenic 50.0%
CTGAAGAGAGAAGAAAGGCC+AGG - Chr5:18339557-18339576 MsG0580025421.01.T01:CDS 50.0%
CTTGTCATGGAATGCGGCTA+TGG - Chr5:18339998-18340017 MsG0580025421.01.T01:intron 50.0%
GATGCCTATTCTCCACCTAC+TGG - Chr5:18338972-18338991 MsG0580025421.01.T01:three_prime_UTR 50.0%
GGAAGCAGAGACAACAGAGT+GGG - Chr5:18339674-18339693 MsG0580025421.01.T01:CDS 50.0%
GGAGGCTGAAGAGAGAAGAA+AGG - Chr5:18339552-18339571 MsG0580025421.01.T01:CDS 50.0%
GGCAAAGCAAGCTATGGGAA+AGG - Chr5:18339813-18339832 MsG0580025421.01.T01:CDS 50.0%
GGGAGATAGCCACATGGAAA+AGG - Chr5:18339492-18339511 MsG0580025421.01.T01:CDS 50.0%
GTATCCACCGGCATTACTCT+TGG + Chr5:18338769-18338788 None:intergenic 50.0%
TCTGCTTCTTCGATCCCTTC+CGG + Chr5:18339894-18339913 None:intergenic 50.0%
TTCAGTAAGGGTTCTGCTGC+TGG - Chr5:18339946-18339965 MsG0580025421.01.T01:intron 50.0%
TTTCCGGCCAAGAGTAATGC+CGG - Chr5:18338759-18338778 MsG0580025421.01.T01:three_prime_UTR 50.0%
! CATAAGCTGGCCTGAGAATG+TGG - Chr5:18339285-18339304 MsG0580025421.01.T01:CDS 50.0%
! CTATTCTCCACCTACTGGCT+TGG - Chr5:18338977-18338996 MsG0580025421.01.T01:exon 50.0%
!! CAACAGAGTGGGTTTGCTGA+TGG - Chr5:18339685-18339704 MsG0580025421.01.T01:CDS 50.0%
!!! ATTTGGTTTTGGAGGCCGGA+AGG - Chr5:18339876-18339895 MsG0580025421.01.T01:intron 50.0%
!!! GTTTTACACGCAGGCATTGG+AGG - Chr5:18339387-18339406 MsG0580025421.01.T01:CDS 50.0%
!!! TTTGGTTTTGGAGGCCGGAA+GGG - Chr5:18339877-18339896 MsG0580025421.01.T01:intron 50.0%
AGGAGATCGGTCAGGAGGTA+AGG - Chr5:18339792-18339811 MsG0580025421.01.T01:CDS 55.0%
CCGATCTCCTGGAGATACTC+CGG + Chr5:18339782-18339801 None:intergenic 55.0%
CGATCTCCTGGAGATACTCC+GGG + Chr5:18339781-18339800 None:intergenic 55.0%
GGTGAAGGGAGATAGCCACA+TGG - Chr5:18339486-18339505 MsG0580025421.01.T01:CDS 55.0%
GTATCTCCAGGAGATCGGTC+AGG - Chr5:18339784-18339803 MsG0580025421.01.T01:CDS 55.0%
TGAGAAGCGGAAGATGGAGG+AGG - Chr5:18339534-18339553 MsG0580025421.01.T01:CDS 55.0%
TTACCTCCTGACCGATCTCC+TGG + Chr5:18339793-18339812 None:intergenic 55.0%
! CCGGAGTATCTCCAGGAGAT+CGG - Chr5:18339779-18339798 MsG0580025421.01.T01:CDS 55.0%
! GCTGGCCTGAGAATGTGGAT+TGG - Chr5:18339290-18339309 MsG0580025421.01.T01:CDS 55.0%
! GGCATTGGAGGGAACTAGAC+AGG - Chr5:18339399-18339418 MsG0580025421.01.T01:CDS 55.0%
CCACCGGCATTACTCTTGGC+CGG + Chr5:18338765-18338784 None:intergenic 60.0%
TCTCCAGGAGATCGGTCAGG+AGG - Chr5:18339787-18339806 MsG0580025421.01.T01:CDS 60.0%
! AAGAGGCCCGGAGTATCTCC+AGG - Chr5:18339772-18339791 MsG0580025421.01.T01:CDS 60.0%
CCGGCCAAGAGTAATGCCGG+TGG - Chr5:18338762-18338781 MsG0580025421.01.T01:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
Chr5 gene 18338706 18340276 18338706 ID=MsG0580025421.01;Name=MsG0580025421.01
Chr5 mRNA 18338706 18340276 18338706 ID=MsG0580025421.01.T01;Parent=MsG0580025421.01;Name=MsG0580025421.01.T01;_AED=0.27;_eAED=0.29;_QI=0|0|0.5|1|1|1|2|286|306
Chr5 exon 18338706 18339870 18338706 ID=MsG0580025421.01.T01:exon:3089;Parent=MsG0580025421.01.T01
Chr5 exon 18340235 18340276 18340235 ID=MsG0580025421.01.T01:exon:3088;Parent=MsG0580025421.01.T01
Chr5 CDS 18340235 18340276 18340235 ID=MsG0580025421.01.T01:cds;Parent=MsG0580025421.01.T01
Chr5 CDS 18338992 18339870 18338992 ID=MsG0580025421.01.T01:cds;Parent=MsG0580025421.01.T01
Chr5 three_prime_UTR 18338706 18338991 18338706 ID=MsG0580025421.01.T01:three_prime_utr;Parent=MsG0580025421.01.T01
Gene Sequence

>MsG0580025421.01.T01

ATGGGAAAAATGTGGTTGAAAAGGGAGATTCCACTAAAGGTTATTGAAATGGAGGTGCCTTTGGTTAACGGTGATCCAATGATTGACGATGAAACTGAAGATTTGGATGAGGAAATGTCACCGTTTGAATCAGATTCAGAAGAAGATGTCAAATTAGCTGAACCATCTAAAACTGCAGTGAATAACAGAGATGCTATATTAGATAAACTTGGAGACATAAGCTGGCCTGAGAATGTGGATTGGAAGCACAAACTCTCCATTGATATTGATCAAGGGCAAGAAGTAGATGTGAACGATGACTTGGCACGTGAGCTATCGTTTTACACGCAGGCATTGGAGGGAACTAGACAGGCCTTTGAGAAGCTTGAGTCGATGGGTCTCCCTTTCTTGAGACCTGCTGACTATTACGCAGAAATGGTGAAGGGAGATAGCCACATGGAAAAGGTGAAAAGTCGGCTATTAGATGAGAAGCGGAAGATGGAGGAGGCTGAAGAGAGAAGAAAGGCCAGGGAAGCAAAGAGATTGTCTAAAGAGGTTCAGTCACAGAAATTGAAAGAAAGGGCCAAGCAGAAAAAGGATGACATTGAATCTGTTAAGAAGTGGAGGAAGCAGAGACAACAGAGTGGGTTTGCTGATGGCGCCGATGCTCCAGATAAGTCTTTGAGCTTTGAGGATGGGAAAGTGTTCGAGAGATCAAAGAAAAAGAGGCCCGGAGTATCTCCAGGAGATCGGTCAGGAGGTAAGGCAAAGCAAGCTATGGGAAAGGGAAAGAAGCCGCAAAAGAAAAGAGATACTAAGAATGCCAAATTTGGTTTTGGAGGCCGGAAGGGATCGAAGAAGCAGAATACAGCTGAAACAACTAATGATTTTGGCGGGTTCAGTAAGGGTTCTGCTGCTGGAAATAAGAAGAGAAAGAGATAA

Protein sequence

>MsG0580025421.01.T01

MGKMWLKREIPLKVIEMEVPLVNGDPMIDDETEDLDEEMSPFESDSEEDVKLAEPSKTAVNNRDAILDKLGDISWPENVDWKHKLSIDIDQGQEVDVNDDLARELSFYTQALEGTRQAFEKLESMGLPFLRPADYYAEMVKGDSHMEKVKSRLLDEKRKMEEAEERRKAREAKRLSKEVQSQKLKERAKQKKDDIESVKKWRKQRQQSGFADGADAPDKSLSFEDGKVFERSKKKRPGVSPGDRSGGKAKQAMGKGKKPQKKRDTKNAKFGFGGRKGSKKQNTAETTNDFGGFSKGSAAGNKKRKR*