AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480021994.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480021994.01.T01 MTR_4g080300 94.737 57 3 0 120 176 35 91 6.09e-33 113
MsG0480021994.01.T01 MTR_4g080300 78.846 52 10 1 1 51 1 52 7.92e-21 82.4
MsG0480021994.01.T02 MTR_4g080300 94.737 57 3 0 120 176 35 91 6.09e-33 113
MsG0480021994.01.T02 MTR_4g080300 78.846 52 10 1 1 51 1 52 7.92e-21 82.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480021994.01.T01 AT2G43810 82.456 57 10 0 120 176 35 91 1.42e-28 102
MsG0480021994.01.T01 AT2G43810 67.308 52 16 1 1 51 1 52 2.86e-16 70.5
MsG0480021994.01.T01 AT2G43810 82.456 57 10 0 120 176 35 91 1.42e-28 102
MsG0480021994.01.T01 AT2G43810 67.308 52 16 1 1 51 1 52 2.86e-16 70.5
MsG0480021994.01.T01 AT2G43810 82.456 57 10 0 120 176 35 91 1.42e-28 102
MsG0480021994.01.T01 AT2G43810 67.308 52 16 1 1 51 1 52 2.86e-16 70.5
MsG0480021994.01.T01 AT3G59810 82.456 57 10 0 120 176 35 91 1.23e-27 99.8
MsG0480021994.01.T01 AT3G59810 71.154 52 14 1 1 51 1 52 8.07e-18 74.7
MsG0480021994.01.T01 AT3G59810 82.456 57 10 0 120 176 35 91 1.23e-27 99.8
MsG0480021994.01.T01 AT3G59810 71.154 52 14 1 1 51 1 52 8.07e-18 74.7
MsG0480021994.01.T01 AT3G59810 82.456 57 10 0 120 176 35 91 1.23e-27 99.8
MsG0480021994.01.T01 AT3G59810 71.154 52 14 1 1 51 1 52 8.07e-18 74.7
MsG0480021994.01.T02 AT2G43810 82.456 57 10 0 120 176 35 91 1.42e-28 102
MsG0480021994.01.T02 AT2G43810 67.308 52 16 1 1 51 1 52 2.86e-16 70.5
MsG0480021994.01.T02 AT2G43810 82.456 57 10 0 120 176 35 91 1.42e-28 102
MsG0480021994.01.T02 AT2G43810 67.308 52 16 1 1 51 1 52 2.86e-16 70.5
MsG0480021994.01.T02 AT2G43810 82.456 57 10 0 120 176 35 91 1.42e-28 102
MsG0480021994.01.T02 AT2G43810 67.308 52 16 1 1 51 1 52 2.86e-16 70.5
MsG0480021994.01.T02 AT3G59810 82.456 57 10 0 120 176 35 91 1.23e-27 99.8
MsG0480021994.01.T02 AT3G59810 71.154 52 14 1 1 51 1 52 8.07e-18 74.7
MsG0480021994.01.T02 AT3G59810 82.456 57 10 0 120 176 35 91 1.23e-27 99.8
MsG0480021994.01.T02 AT3G59810 71.154 52 14 1 1 51 1 52 8.07e-18 74.7
MsG0480021994.01.T02 AT3G59810 82.456 57 10 0 120 176 35 91 1.23e-27 99.8
MsG0480021994.01.T02 AT3G59810 71.154 52 14 1 1 51 1 52 8.07e-18 74.7

Find 14 sgRNAs with CRISPR-Local

Find 219 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTCAAACCAACATATATT+TGG 0.145854 4:-66911093 None:intergenic
AAATACTTGTTGGCATATTT+TGG 0.173229 4:+66911253 MsG0480021994.01.T01:three_prime_UTR
TCATGGTAATTGAGTTTCTA+TGG 0.245285 4:+66911191 MsG0480021994.01.T01:three_prime_UTR
CCACTTTGTAAAATACTTGT+TGG 0.347405 4:+66911243 MsG0480021994.01.T01:three_prime_UTR
TTCTGCTAGAGTCCTCTTTG+AGG 0.400676 4:-66911051 None:intergenic
AGTTTCAGAAAATAGGTAAC+CGG 0.488181 4:-66911151 None:intergenic
TCTATGGTTATACTATATCA+AGG 0.496579 4:+66911207 MsG0480021994.01.T01:three_prime_UTR
AGAGGAATCCAAATATATGT+TGG 0.528071 4:+66911085 MsG0480021994.01.T01:three_prime_UTR
CAAAGAGGACTCTAGCAGAA+GGG 0.565739 4:+66911054 MsG0480021994.01.T01:CDS
TGTACATCAGTACCTCAAAG+AGG 0.584586 4:+66911039 MsG0480021994.01.T01:CDS
AGCAGAAGGGGCTTAAACAG+AGG 0.597578 4:+66911067 MsG0480021994.01.T01:exon
AAAGAGGACTCTAGCAGAAG+GGG 0.600102 4:+66911055 MsG0480021994.01.T01:CDS
TCAAAGAGGACTCTAGCAGA+AGG 0.600306 4:+66911053 MsG0480021994.01.T01:CDS
CAATTACCATGACAAACATG+AGG 0.688290 4:-66911180 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTATTTATTTATTTATTT+CGG + Chr4:66910268-66910287 MsG0480021994.01.T01:intron 0.0%
!! CATAATATAACAAATATAGA+TGG - Chr4:66909982-66910001 None:intergenic 15.0%
!! TATTCATTTAGTTATTCAAT+AGG + Chr4:66909446-66909465 MsG0480021994.01.T01:intron 15.0%
!!! ACTCATTTTTTTTTTAATTC+TGG + Chr4:66909231-66909250 MsG0480021994.01.T01:intron 15.0%
!!! TGTGATTTTTTTTTTAAACT+TGG + Chr4:66908748-66908767 MsG0480021994.01.T01:intron 15.0%
!!! TTTTTTTTTTAAACTTGGTA+TGG + Chr4:66908753-66908772 MsG0480021994.01.T01:intron 15.0%
!! AATTCAAACCAACATATATT+TGG - Chr4:66911096-66911115 None:intergenic 20.0%
!! GATATCTGAATAAGAAATTA+CGG - Chr4:66908662-66908681 None:intergenic 20.0%
!! GTAAAAAAGTTTCAGAAAAT+AGG - Chr4:66911161-66911180 None:intergenic 20.0%
!! GTAACTAATCTTATAGTTAT+TGG + Chr4:66910478-66910497 MsG0480021994.01.T01:intron 20.0%
!! TAACTTTAAATTAGACAGAA+AGG - Chr4:66910232-66910251 None:intergenic 20.0%
!! TCTTAGTTTACATTATTTGA+AGG + Chr4:66908680-66908699 MsG0480021994.01.T01:intron 20.0%
!!! TTGTAACTTTTTGTATTATG+TGG + Chr4:66911127-66911146 MsG0480021994.01.T01:intron 20.0%
! AAACAATTTGTCCATTCAAT+TGG + Chr4:66910013-66910032 MsG0480021994.01.T01:intron 25.0%
! AGTTTGGTTATATCACTTAT+TGG + Chr4:66910714-66910733 MsG0480021994.01.T01:intron 25.0%
! ATAGGAGTAGAAATTGAAAT+AGG + Chr4:66909464-66909483 MsG0480021994.01.T01:intron 25.0%
! ATGAAAGAAAACAGAGAAAT+CGG - Chr4:66908527-66908546 None:intergenic 25.0%
! ATTCACAATAAAAAACCACA+AGG - Chr4:66908945-66908964 None:intergenic 25.0%
! GAAAAAGTTTAGTTGGATTT+GGG + Chr4:66909851-66909870 MsG0480021994.01.T01:intron 25.0%
! GTTACATTATACTTCTATCT+AGG + Chr4:66910768-66910787 MsG0480021994.01.T01:intron 25.0%
! TAAGAGACAAATAGTAAGAA+AGG + Chr4:66909365-66909384 MsG0480021994.01.T01:intron 25.0%
! TAGTAAAAATTGAGTACACT+AGG + Chr4:66909717-66909736 MsG0480021994.01.T01:intron 25.0%
! TAGTTTACATTATTTGAAGG+CGG + Chr4:66908683-66908702 MsG0480021994.01.T01:intron 25.0%
! TCTATGGTTATACTATATCA+AGG + Chr4:66911207-66911226 MsG0480021994.01.T01:three_prime_UTR 25.0%
! TTCACAATAAAAAACCACAA+GGG - Chr4:66908944-66908963 None:intergenic 25.0%
! TTTACTTTCTCTGTCTAATT+TGG + Chr4:66909191-66909210 MsG0480021994.01.T01:intron 25.0%
! TTTGGTTAAATGAAAAGAGA+TGG + Chr4:66909067-66909086 MsG0480021994.01.T01:CDS 25.0%
!! AAAGAATAGAGGTTCTAATT+TGG + Chr4:66909129-66909148 MsG0480021994.01.T01:intron 25.0%
!! AAATTAGGCTCAATTGTTTT+TGG + Chr4:66910796-66910815 MsG0480021994.01.T01:intron 25.0%
!! AGATTAGTTACATAAGATAC+AGG - Chr4:66910469-66910488 None:intergenic 25.0%
!! ATTTGGAGTTATTATGAGAT+TGG + Chr4:66909146-66909165 MsG0480021994.01.T01:intron 25.0%
!! ATTTTCCATTCTATGGTTTT+AGG + Chr4:66908549-66908568 MsG0480021994.01.T01:CDS 25.0%
!! TTCATCAATTTTCCATTCTA+TGG + Chr4:66908542-66908561 MsG0480021994.01.T01:CDS 25.0%
!!! AAATACTTGTTGGCATATTT+TGG + Chr4:66911253-66911272 MsG0480021994.01.T01:three_prime_UTR 25.0%
!!! ATAATGCATTGATTGTTTCT+TGG + Chr4:66910669-66910688 MsG0480021994.01.T01:intron 25.0%
!!! TGGATTTTGAATTCAAGTTT+AGG + Chr4:66908587-66908606 MsG0480021994.01.T01:intron 25.0%
AAATGAAAAGAGATGGAATG+TGG + Chr4:66909074-66909093 MsG0480021994.01.T01:CDS 30.0%
AAGAAAAAGTTAGGTTTGAC+TGG + Chr4:66909491-66909510 MsG0480021994.01.T01:intron 30.0%
AAGTTGAAATACAAGGGAAA+GGG + Chr4:66910511-66910530 MsG0480021994.01.T01:intron 30.0%
AATGGAAAGAGATGGAATAT+GGG + Chr4:66910118-66910137 MsG0480021994.01.T01:intron 30.0%
ACAAGAGACAAATAGTAAGA+AGG + Chr4:66910397-66910416 MsG0480021994.01.T01:intron 30.0%
AGAAAAAGTTAGGTTTGACT+GGG + Chr4:66909492-66909511 MsG0480021994.01.T01:intron 30.0%
AGAGGAATCCAAATATATGT+TGG + Chr4:66911085-66911104 MsG0480021994.01.T01:three_prime_UTR 30.0%
AGAGTAGAAGTTGAAATACA+AGG + Chr4:66910504-66910523 MsG0480021994.01.T01:intron 30.0%
AGTTTACATTATTTGAAGGC+GGG + Chr4:66908684-66908703 MsG0480021994.01.T01:intron 30.0%
AGTTTCAGAAAATAGGTAAC+CGG - Chr4:66911154-66911173 None:intergenic 30.0%
ATAGGAGGAAAGAAAAAGTT+AGG + Chr4:66909482-66909501 MsG0480021994.01.T01:intron 30.0%
ATTAACCTCTGTTACTAGTT+TGG + Chr4:66910698-66910717 MsG0480021994.01.T01:intron 30.0%
CCACTTTGTAAAATACTTGT+TGG + Chr4:66911243-66911262 MsG0480021994.01.T01:three_prime_UTR 30.0%
CGAAAAAGTTTAGTTGGATT+TGG + Chr4:66909850-66909869 MsG0480021994.01.T01:intron 30.0%
GAGTAGAAGTTGAAATACAA+GGG + Chr4:66910505-66910524 MsG0480021994.01.T01:intron 30.0%
GTAACTGATCGTTTAGTTAT+TGG + Chr4:66909776-66909795 MsG0480021994.01.T01:intron 30.0%
GTACATCAATACCAATTGAA+TGG - Chr4:66910027-66910046 None:intergenic 30.0%
TAAAAATTGAGTACACTAGG+AGG + Chr4:66909720-66909739 MsG0480021994.01.T01:intron 30.0%
TAATGGAAAGAGATGGAATA+TGG + Chr4:66910117-66910136 MsG0480021994.01.T01:intron 30.0%
TAATTTGGCATAGTAGGATT+CGG + Chr4:66908861-66908880 MsG0480021994.01.T01:intron 30.0%
TATAACCAAACTAGTAACAG+AGG - Chr4:66910706-66910725 None:intergenic 30.0%
TCACAATAAAAAACCACAAG+GGG - Chr4:66908943-66908962 None:intergenic 30.0%
TCAGAAAAGGCTATAATGTT+TGG + Chr4:66909049-66909068 MsG0480021994.01.T01:CDS 30.0%
TCATGGTAATTGAGTTTCTA+TGG + Chr4:66911191-66911210 MsG0480021994.01.T01:three_prime_UTR 30.0%
TCTATCTAGGTACACAAATT+AGG + Chr4:66910781-66910800 MsG0480021994.01.T01:intron 30.0%
TGGGTATATGAATATTGCAA+TGG + Chr4:66910850-66910869 MsG0480021994.01.T01:CDS 30.0%
TTAGTGAACACAAGTTTCAT+TGG - Chr4:66910072-66910091 None:intergenic 30.0%
! ACAAGTATTTTACAAAGTGG+CGG - Chr4:66911243-66911262 None:intergenic 30.0%
! ACTTTTTGTATTATGTGGAC+CGG + Chr4:66911132-66911151 MsG0480021994.01.T01:intron 30.0%
! CCAACAAGTATTTTACAAAG+TGG - Chr4:66911246-66911265 None:intergenic 30.0%
! GGCTATAATGTTTGGTTTAA+TGG + Chr4:66910100-66910119 MsG0480021994.01.T01:intron 30.0%
! TAGAACCTCTATTCTTTTCA+TGG - Chr4:66909126-66909145 None:intergenic 30.0%
! TCTTTTCAATTGCTCAACAT+GGG - Chr4:66910344-66910363 None:intergenic 30.0%
! TTCTTTTCAATTGCTCAACA+TGG - Chr4:66910345-66910364 None:intergenic 30.0%
! TTTGGTTTAATGGAAAGAGA+TGG + Chr4:66910110-66910129 MsG0480021994.01.T01:intron 30.0%
! TTTTTACCTCATGTTTGTCA+TGG + Chr4:66911174-66911193 MsG0480021994.01.T01:three_prime_UTR 30.0%
!! TCTCTTCAACTATTTCTACA+CGG - Chr4:66910296-66910315 None:intergenic 30.0%
!! TTTTGTTTGTCCAAAGCAAA+AGG - Chr4:66909015-66909034 None:intergenic 30.0%
!!! CAGAATGTTTTAGCTTAGTT+TGG + Chr4:66911276-66911295 MsG0480021994.01.T01:three_prime_UTR 30.0%
!!! TTGTTTTTGGTTAATCTTGC+AGG + Chr4:66910809-66910828 MsG0480021994.01.T01:CDS 30.0%
ACCAATATGTGATACTACTC+TGG - Chr4:66909593-66909612 None:intergenic 35.0%
ACCAGAGTAGTATCACATAT+TGG + Chr4:66909589-66909608 MsG0480021994.01.T01:intron 35.0%
ACCATTTCATCTTCAACCAT+GGG + Chr4:66909557-66909576 MsG0480021994.01.T01:intron 35.0%
AGTAGAGCTTGAAAGAAACT+TGG + Chr4:66910539-66910558 MsG0480021994.01.T01:intron 35.0%
AGTGACCTAAAACCATAGAA+TGG - Chr4:66908557-66908576 None:intergenic 35.0%
ATCACTTCATCTAACACCAT+TGG + Chr4:66910617-66910636 MsG0480021994.01.T01:intron 35.0%
ATCACTTCATCTTCTACCAT+TGG + Chr4:66909915-66909934 MsG0480021994.01.T01:intron 35.0%
CAATTACCATGACAAACATG+AGG - Chr4:66911183-66911202 None:intergenic 35.0%
CCTACTATGCCAAATTATGT+GGG - Chr4:66908858-66908877 None:intergenic 35.0%
CTAAGAGTAAAAGCTGGAAT+AGG + Chr4:66909799-66909818 MsG0480021994.01.T01:intron 35.0%
GAAAAAGTTAGGTTTGACTG+GGG + Chr4:66909493-66909512 MsG0480021994.01.T01:intron 35.0%
GAAGTTGAAATACAAGGGAA+AGG + Chr4:66910510-66910529 MsG0480021994.01.T01:intron 35.0%
GAGGAACGAAAAAGTTTAGT+TGG + Chr4:66909844-66909863 MsG0480021994.01.T01:intron 35.0%
GGAGTAGAAATTGAAATAGG+AGG + Chr4:66909467-66909486 MsG0480021994.01.T01:intron 35.0%
GGTTATATCACTTATTGGTG+TGG + Chr4:66910719-66910738 MsG0480021994.01.T01:intron 35.0%
GTAGAGCTTGAAAGAAACTT+GGG + Chr4:66910540-66910559 MsG0480021994.01.T01:intron 35.0%
GTAGTATCACATATTGGTGT+AGG + Chr4:66909595-66909614 MsG0480021994.01.T01:intron 35.0%
TACACTAGGAGAAATAAGCA+TGG + Chr4:66909390-66909409 MsG0480021994.01.T01:intron 35.0%
TACCATTTCATCTTCAACCA+TGG + Chr4:66909556-66909575 MsG0480021994.01.T01:intron 35.0%
TAGAGCCATGAAAAGAATAG+AGG + Chr4:66909118-66909137 MsG0480021994.01.T01:intron 35.0%
TATCACTTATTGGTGTGGAT+TGG + Chr4:66910724-66910743 MsG0480021994.01.T01:intron 35.0%
TATTGCAATGGAACAAACAG+AGG + Chr4:66910862-66910881 MsG0480021994.01.T01:CDS 35.0%
TCCTACTATGCCAAATTATG+TGG - Chr4:66908859-66908878 None:intergenic 35.0%
TTGGGTTCACTAATCAGAAA+AGG + Chr4:66909036-66909055 MsG0480021994.01.T01:CDS 35.0%
TTTAAACTTGGTATGGTCCA+AGG + Chr4:66908760-66908779 MsG0480021994.01.T01:intron 35.0%
! AAGTTTAGGTTCACATTCCT+AGG + Chr4:66908601-66908620 MsG0480021994.01.T01:intron 35.0%
! CAAACAGAGGAGTATGTTAA+TGG + Chr4:66910875-66910894 MsG0480021994.01.T01:CDS 35.0%
! CTTTTCAACTGCTAAAAGCA+GGG - Chr4:66909307-66909326 None:intergenic 35.0%
! CTTTTCAATTGCTCAACATG+GGG - Chr4:66910343-66910362 None:intergenic 35.0%
! GCTTTGGACAAACAAAACTT+GGG + Chr4:66909018-66909037 MsG0480021994.01.T01:CDS 35.0%
! TAGTAAGAAAGGAGTACACT+AGG + Chr4:66909376-66909395 MsG0480021994.01.T01:intron 35.0%
! TATTGGCTAAGAGTAAAAGC+TGG + Chr4:66909793-66909812 MsG0480021994.01.T01:intron 35.0%
! TCTTTTCAACTGCTAAAAGC+AGG - Chr4:66909308-66909327 None:intergenic 35.0%
! TGCTTTGGACAAACAAAACT+TGG + Chr4:66909017-66909036 MsG0480021994.01.T01:CDS 35.0%
! TTCGGACAAGAGAATTTTAG+AGG + Chr4:66908879-66908898 MsG0480021994.01.T01:intron 35.0%
!! AAAGAAACTTGGGTTGGATT+GGG + Chr4:66910550-66910569 MsG0480021994.01.T01:intron 35.0%
!! ACAAGTTGCACTTTTTGCTT+TGG + Chr4:66910045-66910064 MsG0480021994.01.T01:intron 35.0%
!! CAAGTTGCACTTTTTGCTTT+GGG + Chr4:66910046-66910065 MsG0480021994.01.T01:intron 35.0%
!! TTAGGTCACTTTGGAATTTG+TGG + Chr4:66908567-66908586 MsG0480021994.01.T01:intron 35.0%
!!! TCTATGGTTTTAGGTCACTT+TGG + Chr4:66908558-66908577 MsG0480021994.01.T01:intron 35.0%
AAGCTGGAATAGGAAGGAAA+TGG + Chr4:66909809-66909828 MsG0480021994.01.T01:intron 40.0%
AGCTAAAAATGTTGCACCAG+AGG - Chr4:66909667-66909686 None:intergenic 40.0%
AGCTGGAATAGGAAGGAAAT+GGG + Chr4:66909810-66909829 MsG0480021994.01.T01:intron 40.0%
AGCTTGAAAGAAACTTGGGT+TGG + Chr4:66910544-66910563 MsG0480021994.01.T01:intron 40.0%
ATCACAGAATAGCTACGGAA+AGG + Chr4:66909640-66909659 MsG0480021994.01.T01:intron 40.0%
ATGAGTGGAACAGAGAAAAG+TGG + Chr4:66908407-66908426 MsG0480021994.01.T01:CDS 40.0%
ATGGATTTGAGGAAATCAGC+TGG - Chr4:66908452-66908471 None:intergenic 40.0%
ATGTGATACTACTCTGGTCA+AGG - Chr4:66909587-66909606 None:intergenic 40.0%
ATTGAGTACACTAGGAGGAA+TGG + Chr4:66909725-66909744 MsG0480021994.01.T01:intron 40.0%
CCAAACATTATAGCCATTGC+TGG - Chr4:66910095-66910114 None:intergenic 40.0%
CCAGCAATGGCTATAATGTT+TGG + Chr4:66910092-66910111 MsG0480021994.01.T01:intron 40.0%
CCCACATAATTTGGCATAGT+AGG + Chr4:66908855-66908874 MsG0480021994.01.T01:intron 40.0%
CGATCAAATTACTGTGACCT+AGG - Chr4:66908621-66908640 None:intergenic 40.0%
CTGCAATCACAGAATAGCTA+CGG + Chr4:66909635-66909654 MsG0480021994.01.T01:intron 40.0%
CTTTGTTCAAGGAGATCCAA+TGG - Chr4:66910636-66910655 None:intergenic 40.0%
GAGAAATAAGCATGGAACAG+AGG + Chr4:66909398-66909417 MsG0480021994.01.T01:intron 40.0%
GAGTAAAAGCTGGAATAGGA+AGG + Chr4:66909803-66909822 MsG0480021994.01.T01:intron 40.0%
GATTTCCTCAAATCCATTCG+TGG + Chr4:66908455-66908474 MsG0480021994.01.T01:CDS 40.0%
GCACATCGACACTAATTGAA+TGG - Chr4:66908983-66909002 None:intergenic 40.0%
GCATTCATTCGAGGGAATAA+TGG + Chr4:66910923-66910942 MsG0480021994.01.T01:CDS 40.0%
GTGATATTAGTGATCCTCCA+TGG - Chr4:66909900-66909919 None:intergenic 40.0%
TAAGAAGGTAGTAGTACGCT+AGG + Chr4:66910412-66910431 MsG0480021994.01.T01:intron 40.0%
TATACCCATCTAGACAAGCT+AGG - Chr4:66910838-66910857 None:intergenic 40.0%
TCCCATGGTTGAAGATGAAA+TGG - Chr4:66909561-66909580 None:intergenic 40.0%
TGAAAAGAGATGGAATGTGG+TGG + Chr4:66909077-66909096 MsG0480021994.01.T01:CDS 40.0%
TGTACATCAGTACCTCAAAG+AGG + Chr4:66911039-66911058 MsG0480021994.01.T01:CDS 40.0%
TTGGATCTCCTTGAACAAAG+TGG + Chr4:66910636-66910655 MsG0480021994.01.T01:intron 40.0%
TTGGATTTGGGAGATCATCA+GGG + Chr4:66909863-66909882 MsG0480021994.01.T01:intron 40.0%
TTGTGTTCACTAACCAGCAA+TGG + Chr4:66910079-66910098 MsG0480021994.01.T01:intron 40.0%
! ATGGTGATGCATTCATTCGA+GGG + Chr4:66910915-66910934 MsG0480021994.01.T01:CDS 40.0%
! CATGGTTACACCTTTTGCTT+TGG + Chr4:66909002-66909021 MsG0480021994.01.T01:CDS 40.0%
! GTATCCTAGCTTGTCTAGAT+GGG + Chr4:66910831-66910850 MsG0480021994.01.T01:CDS 40.0%
! TATGGTGATGCATTCATTCG+AGG + Chr4:66910914-66910933 MsG0480021994.01.T01:CDS 40.0%
!! AAGAAACTTGGGTTGGATTG+GGG + Chr4:66910551-66910570 MsG0480021994.01.T01:intron 40.0%
!! ATGGACTAGCCCACATAATT+TGG + Chr4:66908846-66908865 MsG0480021994.01.T01:intron 40.0%
!! GAAAGAAACTTGGGTTGGAT+TGG + Chr4:66910549-66910568 MsG0480021994.01.T01:intron 40.0%
!! TCAATTAGTGTCGATGTGCA+TGG + Chr4:66908984-66909003 MsG0480021994.01.T01:intron 40.0%
!! TTTTAGAGGAGCACACTCTA+AGG + Chr4:66908893-66908912 MsG0480021994.01.T01:intron 40.0%
AAAGAGGACTCTAGCAGAAG+GGG + Chr4:66911055-66911074 MsG0480021994.01.T01:CDS 45.0%
AAGGAAATGGGGTATAGTGG+AGG + Chr4:66909822-66909841 MsG0480021994.01.T01:intron 45.0%
AGCCAAAGCTAAGCTCTGTA+TGG + Chr4:66908827-66908846 MsG0480021994.01.T01:intron 45.0%
AGGAAGGAAATGGGGTATAG+TGG + Chr4:66909819-66909838 MsG0480021994.01.T01:intron 45.0%
ATGGTATGAGTCATCGTCCA+AGG - Chr4:66909542-66909561 None:intergenic 45.0%
CAAAGAGGACTCTAGCAGAA+GGG + Chr4:66911054-66911073 MsG0480021994.01.T01:CDS 45.0%
CAGAGCTACCACTTTGTTCA+AGG - Chr4:66910647-66910666 None:intergenic 45.0%
CTCTGGTCAAGGAAATCCAA+TGG - Chr4:66909934-66909953 None:intergenic 45.0%
CTTGAACAAAGTGGTAGCTC+TGG + Chr4:66910645-66910664 MsG0480021994.01.T01:intron 45.0%
GAGTTGAGCTTAACAACCAC+AGG - Chr4:66908485-66908504 None:intergenic 45.0%
GCTATTCTGTGATTGCAGCA+TGG - Chr4:66909633-66909652 None:intergenic 45.0%
GCTGGAATAGGAAGGAAATG+GGG + Chr4:66909811-66909830 MsG0480021994.01.T01:intron 45.0%
GGAACAGAGAAAAGTGGTTC+AGG + Chr4:66908413-66908432 MsG0480021994.01.T01:CDS 45.0%
GGACAGCTGAAGAACAAGTA+TGG + Chr4:66910896-66910915 MsG0480021994.01.T01:CDS 45.0%
GTCCATACAGAGCTTAGCTT+TGG - Chr4:66908832-66908851 None:intergenic 45.0%
GTGGTTGTTAAGCTCAACTC+TGG + Chr4:66908485-66908504 MsG0480021994.01.T01:CDS 45.0%
GTTGGATTTGGGAGATCATC+AGG + Chr4:66909862-66909881 MsG0480021994.01.T01:intron 45.0%
TCAAAGAGGACTCTAGCAGA+AGG + Chr4:66911053-66911072 MsG0480021994.01.T01:CDS 45.0%
TTCTGCTAGAGTCCTCTTTG+AGG - Chr4:66911054-66911073 None:intergenic 45.0%
TTGGATTTCCTTGACCAGAG+TGG + Chr4:66909934-66909953 MsG0480021994.01.T01:intron 45.0%
! CTTTAATTTCCCCTGGACAG+TGG - Chr4:66908809-66908828 None:intergenic 45.0%
! GAGGAAATCAGCTGGAGTTT+TGG - Chr4:66908444-66908463 None:intergenic 45.0%
! GGTATCCTAGCTTGTCTAGA+TGG + Chr4:66910830-66910849 MsG0480021994.01.T01:CDS 45.0%
! GTCTACCACGAATGGATTTG+AGG - Chr4:66908463-66908482 None:intergenic 45.0%
!! AACTCTGGTGTTGACTATCG+AGG + Chr4:66908500-66908519 MsG0480021994.01.T01:CDS 45.0%
!! CATTATTTGAAGGCGGGTTG+TGG + Chr4:66908690-66908709 MsG0480021994.01.T01:intron 45.0%
!! GCTTTGGCTTTAATTTCCCC+TGG - Chr4:66908816-66908835 None:intergenic 45.0%
!! TTGGATTGGGGAGAGTATCA+GGG + Chr4:66910563-66910582 MsG0480021994.01.T01:intron 45.0%
AACCACAGGTCTACCACGAA+TGG - Chr4:66908471-66908490 None:intergenic 50.0%
AAGGGGTTGCCTGATTGTGT+AGG - Chr4:66908926-66908945 None:intergenic 50.0%
AGCAGAAGGGGCTTAAACAG+AGG + Chr4:66911067-66911086 MsG0480021994.01.T01:exon 50.0%
AGTTAGGTTTGACTGGGGAG+AGG + Chr4:66909498-66909517 MsG0480021994.01.T01:intron 50.0%
ATAGCTACGGAAAGGACCTC+TGG + Chr4:66909648-66909667 MsG0480021994.01.T01:intron 50.0%
ATCCATTCGTGGTAGACCTG+TGG + Chr4:66908466-66908485 MsG0480021994.01.T01:CDS 50.0%
CACTAGGAGGAATGGCACAT+AGG + Chr4:66909733-66909752 MsG0480021994.01.T01:intron 50.0%
GAATTGGTCCCCGGATAAGT+CGG - Chr4:66908787-66908806 None:intergenic 50.0%
GATAAGAGTCACCCTCTCCA+AGG - Chr4:66910600-66910619 None:intergenic 50.0%
GGTTCCTAGCCTACACAATC+AGG + Chr4:66908914-66908933 MsG0480021994.01.T01:intron 50.0%
GTTGCCTGATTGTGTAGGCT+AGG - Chr4:66908921-66908940 None:intergenic 50.0%
TAGAGCTACCACTCTGGTCA+AGG - Chr4:66909945-66909964 None:intergenic 50.0%
TCAGGGTCTCTCAAACACCT+TGG + Chr4:66909522-66909541 MsG0480021994.01.T01:intron 50.0%
TCAGGGTCTCTTGAACACCA+TGG + Chr4:66909880-66909899 MsG0480021994.01.T01:intron 50.0%
TCCCTCTAACACCTTGGAGA+GGG + Chr4:66910586-66910605 MsG0480021994.01.T01:intron 50.0%
TTTCCCCTGGACAGTGGAAT+TGG - Chr4:66908803-66908822 None:intergenic 50.0%
TTTGACTGGGGAGAGGATCA+GGG + Chr4:66909505-66909524 MsG0480021994.01.T01:intron 50.0%
! ACCCTCTCCAAGGTGTTAGA+GGG - Chr4:66910590-66910609 None:intergenic 50.0%
! GAAATGGGGTATAGTGGAGG+AGG + Chr4:66909825-66909844 MsG0480021994.01.T01:intron 50.0%
!! ACCAGAGTGGTAGCTCTAGA+AGG + Chr4:66909947-66909966 MsG0480021994.01.T01:intron 50.0%
!! ACCTTCTAGAGCTACCACTC+TGG - Chr4:66909951-66909970 None:intergenic 50.0%
!! GTTGGATTGGGGAGAGTATC+AGG + Chr4:66910562-66910581 MsG0480021994.01.T01:intron 50.0%
CACAATCAGGCAACCCCTTG+TGG + Chr4:66908927-66908946 MsG0480021994.01.T01:intron 55.0%
CTCTGGTCAAGGAGATCCCA+TGG - Chr4:66909576-66909595 None:intergenic 55.0%
GGACCAATTCCACTGTCCAG+GGG + Chr4:66908797-66908816 MsG0480021994.01.T01:CDS 55.0%
GGGACCAATTCCACTGTCCA+GGG + Chr4:66908796-66908815 MsG0480021994.01.T01:CDS 55.0%
GGGTCTCTTGAACACCATGG+AGG + Chr4:66909883-66909902 MsG0480021994.01.T01:intron 55.0%
GTCCCTCTAACACCTTGGAG+AGG + Chr4:66910585-66910604 MsG0480021994.01.T01:intron 55.0%
GTTTGACTGGGGAGAGGATC+AGG + Chr4:66909504-66909523 MsG0480021994.01.T01:intron 55.0%
TCAGGGTCCCTCTAACACCT+TGG + Chr4:66910580-66910599 MsG0480021994.01.T01:intron 55.0%
TGGACAGTGGAATTGGTCCC+CGG - Chr4:66908796-66908815 None:intergenic 55.0%
! CACCCTCTCCAAGGTGTTAG+AGG - Chr4:66910591-66910610 None:intergenic 55.0%
! GGTCCAAGGACCGACTTATC+CGG + Chr4:66908774-66908793 MsG0480021994.01.T01:intron 55.0%
! GTCCAAGGACCGACTTATCC+GGG + Chr4:66908775-66908794 MsG0480021994.01.T01:intron 55.0%
! TCCAAGGACCGACTTATCCG+GGG + Chr4:66908776-66908795 MsG0480021994.01.T01:intron 55.0%
GGGGACCAATTCCACTGTCC+AGG + Chr4:66908795-66908814 MsG0480021994.01.T01:CDS 60.0%
TCCCCGGATAAGTCGGTCCT+TGG - Chr4:66908780-66908799 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr4 gene 66908407 66911381 66908407 ID=MsG0480021994.01;Name=MsG0480021994.01
Chr4 mRNA 66908407 66911352 66908407 ID=MsG0480021994.01.T01;Parent=MsG0480021994.01;Name=MsG0480021994.01.T01;_AED=0.39;_eAED=0.55;_QI=0|0.4|0.33|1|0.6|0.5|6|229|176
Chr4 exon 66911036 66911113 66911036 ID=MsG0480021994.01.T01:exon:20934;Parent=MsG0480021994.01.T01
Chr4 exon 66911155 66911352 66911155 ID=MsG0480021994.01.T01:exon:20935;Parent=MsG0480021994.01.T01
Chr4 CDS 66908407 66908570 66908407 ID=MsG0480021994.01.T01:cds;Parent=MsG0480021994.01.T01
Chr4 CDS 66908782 66908843 66908782 ID=MsG0480021994.01.T01:cds;Parent=MsG0480021994.01.T01
Chr4 CDS 66908992 66909107 66908992 ID=MsG0480021994.01.T01:cds;Parent=MsG0480021994.01.T01
Chr4 CDS 66910803 66910944 66910803 ID=MsG0480021994.01.T01:cds;Parent=MsG0480021994.01.T01
Chr4 CDS 66911036 66911082 66911036 ID=MsG0480021994.01.T01:cds;Parent=MsG0480021994.01.T01
Chr4 three_prime_UTR 66911083 66911113 66911083 ID=MsG0480021994.01.T01:three_prime_utr;Parent=MsG0480021994.01.T01
Chr4 three_prime_UTR 66911155 66911352 66911155 ID=MsG0480021994.01.T01:three_prime_utr;Parent=MsG0480021994.01.T01
Chr4 mRNA 66908407 66911381 66908407 ID=MsG0480021994.01.T02;Parent=MsG0480021994.01;Name=MsG0480021994.01.T02;_AED=0.38;_eAED=0.53;_QI=0|0.25|0.2|1|0.75|0.8|5|299|176
Chr4 exon 66911036 66911381 66911036 ID=MsG0480021994.01.T02:exon:20936;Parent=MsG0480021994.01.T02
Chr4 CDS 66908407 66908570 66908407 ID=MsG0480021994.01.T02:cds;Parent=MsG0480021994.01.T02
Chr4 CDS 66908782 66908843 66908782 ID=MsG0480021994.01.T02:cds;Parent=MsG0480021994.01.T02
Chr4 CDS 66908992 66909107 66908992 ID=MsG0480021994.01.T02:cds;Parent=MsG0480021994.01.T02
Chr4 CDS 66910803 66910944 66910803 ID=MsG0480021994.01.T02:cds;Parent=MsG0480021994.01.T02
Chr4 CDS 66911036 66911082 66911036 ID=MsG0480021994.01.T02:cds;Parent=MsG0480021994.01.T02
Chr4 three_prime_UTR 66911083 66911381 66911083 ID=MsG0480021994.01.T02:three_prime_utr;Parent=MsG0480021994.01.T02
Gene Sequence

>MsG0480021994.01.T01

ATGAGTGGAACAGAGAAAAGTGGTTCAGGAACAACCAAAACTCCAGCTGATTTCCTCAAATCCATTCGTGGTAGACCTGTGGTTGTTAAGCTCAACTCTGGTGTTGACTATCGAGGTCCGATTTCTCTGTTTTCTTTCATCAATTTTCCATTCTATGGTTTTAGGACCGACTTATCCGGGGACCAATTCCACTGTCCAGGGGAAATTAAAGCCAAAGCTAAGCTCTTGTCGATGTGCATGGTTACACCTTTTGCTTTGGACAAACAAAACTTGGGTTCACTAATCAGAAAAGGCTATAATGTTTGGTTAAATGAAAAGAGATGGAATGTGGTGGAAAGAAATGCTCAATTGTTTTTGGTTAATCTTGCAGGTATCCTAGCTTGTCTAGATGGGTATATGAATATTGCAATGGAACAAACAGAGGAGTATGTTAATGGACAGCTGAAGAACAAGTATGGTGATGCATTCATTCGAGGGAATAATGTTTTGTACATCAGTACCTCAAAGAGGACTCTAGCAGAAGGGGCTTAA

>MsG0480021994.01.T02

ATGAGTGGAACAGAGAAAAGTGGTTCAGGAACAACCAAAACTCCAGCTGATTTCCTCAAATCCATTCGTGGTAGACCTGTGGTTGTTAAGCTCAACTCTGGTGTTGACTATCGAGGTCCGATTTCTCTGTTTTCTTTCATCAATTTTCCATTCTATGGTTTTAGGACCGACTTATCCGGGGACCAATTCCACTGTCCAGGGGAAATTAAAGCCAAAGCTAAGCTCTTGTCGATGTGCATGGTTACACCTTTTGCTTTGGACAAACAAAACTTGGGTTCACTAATCAGAAAAGGCTATAATGTTTGGTTAAATGAAAAGAGATGGAATGTGGTGGAAAGAAATGCTCAATTGTTTTTGGTTAATCTTGCAGGTATCCTAGCTTGTCTAGATGGGTATATGAATATTGCAATGGAACAAACAGAGGAGTATGTTAATGGACAGCTGAAGAACAAGTATGGTGATGCATTCATTCGAGGGAATAATGTTTTGTACATCAGTACCTCAAAGAGGACTCTAGCAGAAGGGGCTTAA

Protein sequence

>MsG0480021994.01.T01

MSGTEKSGSGTTKTPADFLKSIRGRPVVVKLNSGVDYRGPISLFSFINFPFYGFRTDLSGDQFHCPGEIKAKAKLLSMCMVTPFALDKQNLGSLIRKGYNVWLNEKRWNVVERNAQLFLVNLAGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGA*

>MsG0480021994.01.T02

MSGTEKSGSGTTKTPADFLKSIRGRPVVVKLNSGVDYRGPISLFSFINFPFYGFRTDLSGDQFHCPGEIKAKAKLLSMCMVTPFALDKQNLGSLIRKGYNVWLNEKRWNVVERNAQLFLVNLAGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGA*