Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017122.01.T01 | XP_003603014.1 | 94.299 | 421 | 11 | 1 | 1 | 421 | 1 | 408 | 0 | 813 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017122.01.T01 | O48723 | 61.823 | 406 | 141 | 2 | 11 | 416 | 10 | 401 | 0 | 512 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017122.01.T01 | G7J6A8 | 94.299 | 421 | 11 | 1 | 1 | 421 | 1 | 408 | 0.0 | 813 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048036.01 | MsG0380017122.01 | 0.826964 | 2.032034e-54 | 1.934823e-51 |
| MsG0180000234.01 | MsG0380017122.01 | 0.842835 | 2.028552e-58 | 3.113943e-55 |
| MsG0180003240.01 | MsG0380017122.01 | 0.862306 | 5.562480e-64 | 1.621463e-60 |
| MsG0180004203.01 | MsG0380017122.01 | 0.801350 | 9.387400e-49 | 4.473129e-46 |
| MsG0380011613.01 | MsG0380017122.01 | 0.801232 | 9.921291e-49 | 4.713587e-46 |
| MsG0380016020.01 | MsG0380017122.01 | 0.825443 | 4.674803e-54 | 4.261298e-51 |
| MsG0380016643.01 | MsG0380017122.01 | 0.807552 | 4.779875e-50 | 2.670153e-47 |
| MsG0380017122.01 | MsG0480023349.01 | 0.819729 | 9.964586e-53 | 7.730810e-50 |
| MsG0380017122.01 | MsG0580025683.01 | 0.804176 | 2.449318e-49 | 1.254394e-46 |
| MsG0380017122.01 | MsG0580029555.01 | 0.858471 | 8.051936e-63 | 2.057318e-59 |
| MsG0380017122.01 | MsG0680030336.01 | 0.807998 | 3.843595e-50 | 2.172358e-47 |
| MsG0380017122.01 | MsG0680031429.01 | 0.832551 | 8.862880e-56 | 9.939883e-53 |
| MsG0380017122.01 | MsG0780039334.01 | 0.801760 | 7.735176e-49 | 3.724041e-46 |
| MsG0380017122.01 | MsG0780039968.01 | 0.825970 | 3.506536e-54 | 3.245068e-51 |
| MsG0380017122.01 | MsG0880047747.01 | 0.842362 | 2.708970e-58 | 4.097871e-55 |
| MsG0280008117.01 | MsG0380017122.01 | 0.840063 | 1.089711e-57 | 1.534472e-54 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017122.01.T01 | MTR_3g101400 | 94.299 | 421 | 11 | 1 | 1 | 421 | 1 | 408 | 0.0 | 813 |
| MsG0380017122.01.T01 | MTR_3g101410 | 87.204 | 422 | 40 | 2 | 1 | 421 | 1 | 409 | 0.0 | 731 |
| MsG0380017122.01.T01 | MTR_1g019940 | 75.060 | 417 | 89 | 3 | 4 | 418 | 5 | 408 | 0.0 | 653 |
| MsG0380017122.01.T01 | MTR_1g019940 | 74.820 | 417 | 88 | 4 | 4 | 418 | 5 | 406 | 0.0 | 645 |
| MsG0380017122.01.T01 | MTR_1g019940 | 73.510 | 302 | 66 | 2 | 118 | 418 | 1 | 289 | 1.14e-166 | 469 |
| MsG0380017122.01.T01 | MTR_5g017680 | 53.465 | 404 | 170 | 5 | 18 | 418 | 8 | 396 | 8.29e-152 | 436 |
| MsG0380017122.01.T01 | MTR_5g017670 | 52.812 | 409 | 172 | 5 | 4 | 410 | 3 | 392 | 6.62e-151 | 434 |
| MsG0380017122.01.T01 | MTR_8g007040 | 43.447 | 412 | 185 | 12 | 10 | 409 | 22 | 397 | 7.85e-98 | 299 |
| MsG0380017122.01.T01 | MTR_8g007090 | 41.667 | 408 | 198 | 11 | 10 | 409 | 22 | 397 | 1.68e-95 | 293 |
| MsG0380017122.01.T01 | MTR_8g007095 | 41.422 | 408 | 199 | 11 | 10 | 409 | 22 | 397 | 2.79e-95 | 293 |
| MsG0380017122.01.T01 | MTR_8g007140 | 44.776 | 402 | 179 | 8 | 10 | 409 | 23 | 383 | 3.79e-90 | 279 |
| MsG0380017122.01.T01 | MTR_8g007125 | 42.611 | 406 | 193 | 12 | 10 | 409 | 22 | 393 | 4.14e-83 | 261 |
| MsG0380017122.01.T01 | MTR_8g007065 | 39.655 | 406 | 207 | 11 | 10 | 409 | 22 | 395 | 6.23e-82 | 258 |
| MsG0380017122.01.T01 | MTR_1g095165 | 28.358 | 402 | 245 | 13 | 20 | 409 | 75 | 445 | 4.19e-40 | 149 |
| MsG0380017122.01.T01 | MTR_7g094940 | 27.636 | 275 | 162 | 7 | 22 | 282 | 32 | 283 | 4.64e-30 | 120 |
| MsG0380017122.01.T01 | MTR_1g072190 | 25.501 | 349 | 218 | 11 | 22 | 368 | 32 | 340 | 3.63e-27 | 112 |
| MsG0380017122.01.T01 | MTR_2g029510 | 28.041 | 296 | 172 | 9 | 12 | 305 | 61 | 317 | 6.47e-20 | 91.7 |
| MsG0380017122.01.T01 | MTR_0368s0010 | 25.185 | 270 | 169 | 9 | 142 | 409 | 43 | 281 | 1.55e-16 | 80.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017122.01.T01 | AT2G26560 | 61.823 | 406 | 141 | 2 | 11 | 416 | 10 | 401 | 0.0 | 512 |
| MsG0380017122.01.T01 | AT4G37070 | 56.468 | 402 | 162 | 1 | 12 | 413 | 11 | 399 | 2.37e-161 | 461 |
| MsG0380017122.01.T01 | AT4G37060 | 54.926 | 406 | 170 | 1 | 13 | 418 | 12 | 404 | 1.07e-157 | 451 |
| MsG0380017122.01.T01 | AT4G37070 | 55.699 | 386 | 158 | 1 | 12 | 397 | 11 | 383 | 2.26e-152 | 437 |
| MsG0380017122.01.T01 | AT4G37070 | 55.699 | 386 | 158 | 1 | 12 | 397 | 11 | 383 | 2.26e-152 | 437 |
| MsG0380017122.01.T01 | AT4G37060 | 51.030 | 437 | 170 | 2 | 13 | 418 | 12 | 435 | 2.96e-151 | 436 |
| MsG0380017122.01.T01 | AT4G37050 | 55.366 | 410 | 162 | 3 | 13 | 414 | 28 | 424 | 8.43e-151 | 434 |
| MsG0380017122.01.T01 | AT4G37070 | 53.627 | 386 | 155 | 2 | 12 | 397 | 11 | 372 | 3.19e-143 | 413 |
| MsG0380017122.01.T01 | AT5G43590 | 50.864 | 405 | 175 | 6 | 12 | 412 | 6 | 390 | 7.11e-123 | 362 |
| MsG0380017122.01.T01 | AT5G43590 | 50.864 | 405 | 175 | 6 | 12 | 412 | 73 | 457 | 7.96e-122 | 362 |
| MsG0380017122.01.T01 | AT2G39220 | 28.934 | 394 | 243 | 14 | 20 | 409 | 108 | 468 | 2.65e-37 | 142 |
| MsG0380017122.01.T01 | AT4G29800 | 27.737 | 411 | 251 | 14 | 20 | 416 | 121 | 499 | 2.89e-37 | 142 |
| MsG0380017122.01.T01 | AT3G54950 | 27.226 | 393 | 248 | 11 | 20 | 409 | 98 | 455 | 2.52e-36 | 139 |
| MsG0380017122.01.T01 | AT4G29800 | 27.670 | 412 | 251 | 15 | 20 | 416 | 121 | 500 | 3.82e-36 | 139 |
| MsG0380017122.01.T01 | AT3G63200 | 30.364 | 247 | 149 | 7 | 22 | 262 | 32 | 261 | 6.37e-31 | 122 |
Find 101 sgRNAs with CRISPR-Local
Find 131 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAATAATCTTTCTCCAATT+TGG | 0.154529 | 3:-92358645 | None:intergenic |
| TGGACAATGTTCCAAGTAAA+AGG | 0.173001 | 3:-92357460 | None:intergenic |
| TTAGATAAACTTTGCCAAAT+TGG | 0.206887 | 3:+92358631 | MsG0380017122.01.T01:CDS |
| GCATCGACGGTGGTGGTATT+AGG | 0.208767 | 3:+92357250 | MsG0380017122.01.T01:CDS |
| ATGTTTGAGCCTATTGAAAA+TGG | 0.238787 | 3:+92358703 | MsG0380017122.01.T01:CDS |
| GGCAGCAAAATGGGGTCTTT+TGG | 0.249313 | 3:+92358228 | MsG0380017122.01.T01:CDS |
| ATTCAAAACTGGCAGCAAAA+TGG | 0.257627 | 3:+92358218 | MsG0380017122.01.T01:CDS |
| TTATAAGATGAGAAAATAAT+TGG | 0.260902 | 3:-92357786 | None:intergenic |
| TTGACTAAAGATATCAATTA+AGG | 0.272567 | 3:-92358278 | None:intergenic |
| GCTGCTCCTACTTATCTTCC+TGG | 0.297373 | 3:+92357867 | MsG0380017122.01.T01:CDS |
| ATTGAAGAAACCAGTATCTA+AGG | 0.307953 | 3:+92358663 | MsG0380017122.01.T01:CDS |
| CATCGACGGTGGTGGTATTA+GGG | 0.320659 | 3:+92357251 | MsG0380017122.01.T01:CDS |
| TTCAAAACTGGCAGCAAAAT+GGG | 0.322622 | 3:+92358219 | MsG0380017122.01.T01:CDS |
| AGGTATTTCCCATCGTATTT+TGG | 0.327115 | 3:-92357669 | None:intergenic |
| GAACTTATGCAGGCACTTGC+TGG | 0.336587 | 3:+92357611 | MsG0380017122.01.T01:intron |
| TCTAAATTAACCTTAGATAC+TGG | 0.337016 | 3:-92358673 | None:intergenic |
| AGTGGACGTTGTTTATCATT+TGG | 0.339325 | 3:-92357414 | None:intergenic |
| GATTACTTTGATGTGATTAC+AGG | 0.344649 | 3:+92357351 | MsG0380017122.01.T01:CDS |
| TAGTCAATCCTCTGGAGATA+TGG | 0.353427 | 3:+92358294 | MsG0380017122.01.T01:CDS |
| GCTATATTCCATGGGTTTGA+TGG | 0.366448 | 3:-92358140 | None:intergenic |
| ATTCTTGAAGTTGCGATTCA+AGG | 0.379087 | 3:-92357302 | None:intergenic |
| ACAAAAGTTTGATTCAAAAC+TGG | 0.388763 | 3:+92358207 | MsG0380017122.01.T01:CDS |
| GTACAGTCCCTTCTGTATCT+TGG | 0.396391 | 3:-92357905 | None:intergenic |
| GTGTGGTTAGGGAGAAGCTT+GGG | 0.398981 | 3:+92357697 | MsG0380017122.01.T01:CDS |
| AAACGTGGGGATCACAATAT+TGG | 0.404692 | 3:-92357745 | None:intergenic |
| AATACCTACACAGTGTGGTT+AGG | 0.406721 | 3:+92357685 | MsG0380017122.01.T01:CDS |
| CAGGCACTTGCTGGGACTGG+TGG | 0.408008 | 3:+92357620 | MsG0380017122.01.T01:intron |
| TGTTTGAGCCTATTGAAAAT+GGG | 0.427789 | 3:+92358704 | MsG0380017122.01.T01:CDS |
| TCTAAGGTTAATTTAGAGAA+TGG | 0.429460 | 3:+92358679 | MsG0380017122.01.T01:CDS |
| GAAATTGTTCAAATCATTAA+CGG | 0.431351 | 3:+92357644 | MsG0380017122.01.T01:CDS |
| CTAATAATCTCATTGGGCAC+TGG | 0.438749 | 3:+92358169 | MsG0380017122.01.T01:CDS |
| AACTTATGCAGGCACTTGCT+GGG | 0.440494 | 3:+92357612 | MsG0380017122.01.T01:intron |
| CAAATTCAGCCTCCCACCTA+TGG | 0.443188 | 3:+92357207 | MsG0380017122.01.T01:CDS |
| AAATTGTTCAAATCATTAAC+GGG | 0.445917 | 3:+92357645 | MsG0380017122.01.T01:CDS |
| TACGATATGAGAATTGAGAA+TGG | 0.446448 | 3:-92358543 | None:intergenic |
| TAGAAAACGGCTATATTCCA+TGG | 0.449347 | 3:-92358149 | None:intergenic |
| AAGATAATTACCTAGGATAC+AGG | 0.457471 | 3:+92358359 | MsG0380017122.01.T01:CDS |
| TATTGTATTACCTGTATCCT+AGG | 0.458582 | 3:-92358369 | None:intergenic |
| GGACAATGTTCCAAGTAAAA+GGG | 0.464623 | 3:-92357459 | None:intergenic |
| GATATCTTTAGTCAATCCTC+TGG | 0.480270 | 3:+92358286 | MsG0380017122.01.T01:CDS |
| AGGCACTTGCTGGGACTGGT+GGG | 0.481875 | 3:+92357621 | MsG0380017122.01.T01:intron |
| ATGCAGGCACTTGCTGGGAC+TGG | 0.483803 | 3:+92357617 | MsG0380017122.01.T01:intron |
| ATACCTACACAGTGTGGTTA+GGG | 0.485763 | 3:+92357686 | MsG0380017122.01.T01:CDS |
| CCAATGAGATTATTAGAAAA+CGG | 0.491994 | 3:-92358162 | None:intergenic |
| AGGAACTCGAGAATAGTTGC+GGG | 0.498265 | 3:-92357282 | None:intergenic |
| CGTGAGTTCAACCTCATTGA+TGG | 0.500018 | 3:+92357927 | MsG0380017122.01.T01:CDS |
| TGACTAAAGATATCAATTAA+GGG | 0.500555 | 3:-92358277 | None:intergenic |
| TTGTAACCAGGAAGATAAGT+AGG | 0.501497 | 3:-92357873 | None:intergenic |
| CCAACCAAGAAGCTCTCAAA+AGG | 0.511212 | 3:+92358731 | MsG0380017122.01.T01:CDS |
| TTGCATGGATGCTCGACTCT+CGG | 0.512268 | 3:+92357824 | MsG0380017122.01.T01:CDS |
| GGCACTTGCTGGGACTGGTG+GGG | 0.520089 | 3:+92357622 | MsG0380017122.01.T01:intron |
| GTGGATTTGTGTCTATATCA+AGG | 0.523219 | 3:-92358947 | None:intergenic |
| GTAAAAGGGCTTGATATCCT+TGG | 0.530283 | 3:-92357445 | None:intergenic |
| CTTGAGTAACAGTAGCAAGA+TGG | 0.544501 | 3:-92358324 | None:intergenic |
| GTCACTAAGTTTCCATAGGT+GGG | 0.548697 | 3:-92357219 | None:intergenic |
| AGTCACTAAGTTTCCATAGG+TGG | 0.549310 | 3:-92357220 | None:intergenic |
| GATCAAGAAAGCCCCTTGCA+TGG | 0.552645 | 3:+92357809 | MsG0380017122.01.T01:CDS |
| TCAAGGTCTTGTTAGTGTGA+GGG | 0.554514 | 3:-92358930 | None:intergenic |
| AATAGTCACTAAGTTTCCAT+AGG | 0.559064 | 3:-92357223 | None:intergenic |
| ATCAACTGAAGAATCTGTAC+CGG | 0.561415 | 3:-92358590 | None:intergenic |
| AGAAAACGGCTATATTCCAT+GGG | 0.563089 | 3:-92358148 | None:intergenic |
| GTGATTACAGGAACAAGTAC+AGG | 0.563901 | 3:+92357363 | MsG0380017122.01.T01:CDS |
| ATCGACGGTGGTGGTATTAG+GGG | 0.564683 | 3:+92357252 | MsG0380017122.01.T01:CDS |
| GAGAGTCGAGCATCCATGCA+AGG | 0.566902 | 3:-92357822 | None:intergenic |
| AAGATAAGTAGGAGCAGCAG+AGG | 0.572780 | 3:-92357862 | None:intergenic |
| ATCAAGGTCTTGTTAGTGTG+AGG | 0.573367 | 3:-92358931 | None:intergenic |
| AGAGTCGAGCATCCATGCAA+GGG | 0.575582 | 3:-92357821 | None:intergenic |
| TGGTGTTTGTGCAAATAATC+CGG | 0.582343 | 3:+92357950 | MsG0380017122.01.T01:CDS |
| CAAGGTCTTGTTAGTGTGAG+GGG | 0.582444 | 3:-92358929 | None:intergenic |
| AATTAGACGGTGAATCTGCT+AGG | 0.587927 | 3:+92357322 | MsG0380017122.01.T01:CDS |
| ATTCTAAGCATCGACGGTGG+TGG | 0.589977 | 3:+92357243 | MsG0380017122.01.T01:CDS |
| CACAAACACCACCATCAATG+AGG | 0.592240 | 3:-92357938 | None:intergenic |
| GTTTGAGCCTATTGAAAATG+GGG | 0.597788 | 3:+92358705 | MsG0380017122.01.T01:CDS |
| TTCAAGAACCAAGATACAGA+AGG | 0.598347 | 3:+92357897 | MsG0380017122.01.T01:CDS |
| ATCATTTGGAGCACTTAACA+TGG | 0.599256 | 3:-92357400 | None:intergenic |
| ATGCAGGATGATACATTGAC+CGG | 0.600764 | 3:+92358571 | MsG0380017122.01.T01:CDS |
| TAACGGGACCAAAATACGAT+GGG | 0.602205 | 3:+92357661 | MsG0380017122.01.T01:CDS |
| TCAAAACTGGCAGCAAAATG+GGG | 0.603239 | 3:+92358220 | MsG0380017122.01.T01:CDS |
| AAGGAACTCGAGAATAGTTG+CGG | 0.605964 | 3:-92357283 | None:intergenic |
| AGTGTGGTTAGGGAGAAGCT+TGG | 0.607976 | 3:+92357696 | MsG0380017122.01.T01:CDS |
| AATTGTCAAGATAATTACCT+AGG | 0.613611 | 3:+92358352 | MsG0380017122.01.T01:CDS |
| TGGTTCTTGAAGTTGTAACC+AGG | 0.626960 | 3:-92357885 | None:intergenic |
| TCAAGAACCAAGATACAGAA+GGG | 0.635453 | 3:+92357898 | MsG0380017122.01.T01:CDS |
| TGTGGTTAGGGAGAAGCTTG+GGG | 0.637104 | 3:+92357698 | MsG0380017122.01.T01:CDS |
| TTAACGGGACCAAAATACGA+TGG | 0.640656 | 3:+92357660 | MsG0380017122.01.T01:CDS |
| TAAGGGAGTTGAACCACCGT+GGG | 0.644389 | 3:-92358260 | None:intergenic |
| TCTCCCTAACCACACTGTGT+AGG | 0.645782 | 3:-92357689 | None:intergenic |
| GAGTCGAGCATCCATGCAAG+GGG | 0.652281 | 3:-92357820 | None:intergenic |
| TCGCAACTTCAAGAATTAGA+CGG | 0.655679 | 3:+92357309 | MsG0380017122.01.T01:CDS |
| GAAATCAACCATATCTCCAG+AGG | 0.656859 | 3:-92358302 | None:intergenic |
| GATGTCTTTATGTCAAACGT+GGG | 0.664930 | 3:-92357759 | None:intergenic |
| TGATGTCTTTATGTCAAACG+TGG | 0.670126 | 3:-92357760 | None:intergenic |
| GTGACTATTCTAAGCATCGA+CGG | 0.670875 | 3:+92357237 | MsG0380017122.01.T01:CDS |
| ACTAAGTTTCCATAGGTGGG+AGG | 0.690895 | 3:-92357216 | None:intergenic |
| ATTACAGGAACAAGTACAGG+TGG | 0.697018 | 3:+92357366 | MsG0380017122.01.T01:CDS |
| TTAAGGGAGTTGAACCACCG+TGG | 0.712500 | 3:-92358261 | None:intergenic |
| GAGTTCAACCTCATTGATGG+TGG | 0.718974 | 3:+92357930 | MsG0380017122.01.T01:CDS |
| TTGGATTGGTTAACCCACGG+TGG | 0.722351 | 3:+92358247 | MsG0380017122.01.T01:CDS |
| TGGGAAATACCTACACAGTG+TGG | 0.740267 | 3:+92357680 | MsG0380017122.01.T01:CDS |
| ATGTCTTTATGTCAAACGTG+GGG | 0.746412 | 3:-92357758 | None:intergenic |
| ACTATTCTAAGCATCGACGG+TGG | 0.761071 | 3:+92357240 | MsG0380017122.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTAGTTTTATTTGTTTT+TGG | + | Chr3:92358038-92358057 | MsG0380017122.01.T01:intron | 10.0% |
| !! | TCATTCAATGATTATATTTA+TGG | + | Chr3:92358764-92358783 | MsG0380017122.01.T01:intron | 15.0% |
| !! | TTATAAGATGAGAAAATAAT+TGG | - | Chr3:92357789-92357808 | None:intergenic | 15.0% |
| !!! | AATTTTCTACATTTTTTTTG+AGG | - | Chr3:92358815-92358834 | None:intergenic | 15.0% |
| !! | AAATTGTTCAAATCATTAAC+GGG | + | Chr3:92357645-92357664 | MsG0380017122.01.T01:CDS | 20.0% |
| !! | GAAATTGTTCAAATCATTAA+CGG | + | Chr3:92357644-92357663 | MsG0380017122.01.T01:CDS | 20.0% |
| !! | TACATTACAATGAATCTAAA+AGG | - | Chr3:92358436-92358455 | None:intergenic | 20.0% |
| !! | TGACTAAAGATATCAATTAA+GGG | - | Chr3:92358280-92358299 | None:intergenic | 20.0% |
| !! | TTGACTAAAGATATCAATTA+AGG | - | Chr3:92358281-92358300 | None:intergenic | 20.0% |
| !!! | ATTAGTCATTTTCAATATAC+CGG | - | Chr3:92357972-92357991 | None:intergenic | 20.0% |
| !!! | TTTATCTAAATTCTCTTTTG+TGG | - | Chr3:92358620-92358639 | None:intergenic | 20.0% |
| ! | AATTGTCAAGATAATTACCT+AGG | + | Chr3:92358352-92358371 | MsG0380017122.01.T01:CDS | 25.0% |
| ! | ACAAAAGTTTGATTCAAAAC+TGG | + | Chr3:92358207-92358226 | MsG0380017122.01.T01:CDS | 25.0% |
| ! | CCAATGAGATTATTAGAAAA+CGG | - | Chr3:92358165-92358184 | None:intergenic | 25.0% |
| ! | GGAAATTGCTTATATATATC+TGG | - | Chr3:92358525-92358544 | None:intergenic | 25.0% |
| ! | GTTATTCAATGAACTTAATG+TGG | - | Chr3:92357555-92357574 | None:intergenic | 25.0% |
| ! | TCAATAATCTTTCTCCAATT+TGG | - | Chr3:92358648-92358667 | None:intergenic | 25.0% |
| ! | TCTAAATTAACCTTAGATAC+TGG | - | Chr3:92358676-92358695 | None:intergenic | 25.0% |
| ! | TTAGATAAACTTTGCCAAAT+TGG | + | Chr3:92358631-92358650 | MsG0380017122.01.T01:CDS | 25.0% |
| !! | CGTTTTCTAATAATCTCATT+GGG | + | Chr3:92358163-92358182 | MsG0380017122.01.T01:CDS | 25.0% |
| !! | TCAAACTTTTGTTCATTCTT+TGG | - | Chr3:92358199-92358218 | None:intergenic | 25.0% |
| !! | TCTAAGGTTAATTTAGAGAA+TGG | + | Chr3:92358679-92358698 | MsG0380017122.01.T01:CDS | 25.0% |
| AAGATAATTACCTAGGATAC+AGG | + | Chr3:92358359-92358378 | MsG0380017122.01.T01:CDS | 30.0% | |
| AATAGTCACTAAGTTTCCAT+AGG | - | Chr3:92357226-92357245 | None:intergenic | 30.0% | |
| ATATCAACATTAATGCATGC+AGG | + | Chr3:92358860-92358879 | MsG0380017122.01.T01:intron | 30.0% | |
| ATGTTTGAGCCTATTGAAAA+TGG | + | Chr3:92358703-92358722 | MsG0380017122.01.T01:CDS | 30.0% | |
| ATTGAAGAAACCAGTATCTA+AGG | + | Chr3:92358663-92358682 | MsG0380017122.01.T01:CDS | 30.0% | |
| CAAAAATACTATCACAAGAG+AGG | + | Chr3:92358887-92358906 | MsG0380017122.01.T01:CDS | 30.0% | |
| CTCATATCGTATAAAAATGC+AGG | + | Chr3:92358555-92358574 | MsG0380017122.01.T01:CDS | 30.0% | |
| GATTACTTTGATGTGATTAC+AGG | + | Chr3:92357351-92357370 | MsG0380017122.01.T01:CDS | 30.0% | |
| TACGATATGAGAATTGAGAA+TGG | - | Chr3:92358546-92358565 | None:intergenic | 30.0% | |
| TATTGTATTACCTGTATCCT+AGG | - | Chr3:92358372-92358391 | None:intergenic | 30.0% | |
| TGTTTGAGCCTATTGAAAAT+GGG | + | Chr3:92358704-92358723 | MsG0380017122.01.T01:CDS | 30.0% | |
| ! | AGCTCTCAAAAGGTATATTA+TGG | + | Chr3:92358741-92358760 | MsG0380017122.01.T01:intron | 30.0% |
| ! | ATGTATACGTACTTTTGTTG+TGG | - | Chr3:92357495-92357514 | None:intergenic | 30.0% |
| ! | CCGTTTTCTAATAATCTCAT+TGG | + | Chr3:92358162-92358181 | MsG0380017122.01.T01:CDS | 30.0% |
| !! | TGTATACGTACTTTTGTTGT+GGG | - | Chr3:92357494-92357513 | None:intergenic | 30.0% |
| !! | TTTTGTTGTGGGAAAATCTT+TGG | - | Chr3:92357483-92357502 | None:intergenic | 30.0% |
| AGAAAACGGCTATATTCCAT+GGG | - | Chr3:92358151-92358170 | None:intergenic | 35.0% | |
| AGTGGACGTTGTTTATCATT+TGG | - | Chr3:92357417-92357436 | None:intergenic | 35.0% | |
| ATCAACTGAAGAATCTGTAC+CGG | - | Chr3:92358593-92358612 | None:intergenic | 35.0% | |
| ATGTCTTTATGTCAAACGTG+GGG | - | Chr3:92357761-92357780 | None:intergenic | 35.0% | |
| ATTAACGGTTGAACTTATGC+AGG | + | Chr3:92357601-92357620 | MsG0380017122.01.T01:intron | 35.0% | |
| ATTCAAAACTGGCAGCAAAA+TGG | + | Chr3:92358218-92358237 | MsG0380017122.01.T01:CDS | 35.0% | |
| ATTCTTGAAGTTGCGATTCA+AGG | - | Chr3:92357305-92357324 | None:intergenic | 35.0% | |
| GATATCTTTAGTCAATCCTC+TGG | + | Chr3:92358286-92358305 | MsG0380017122.01.T01:CDS | 35.0% | |
| GATGTCTTTATGTCAAACGT+GGG | - | Chr3:92357762-92357781 | None:intergenic | 35.0% | |
| GGACAATGTTCCAAGTAAAA+GGG | - | Chr3:92357462-92357481 | None:intergenic | 35.0% | |
| GTTTGAGCCTATTGAAAATG+GGG | + | Chr3:92358705-92358724 | MsG0380017122.01.T01:CDS | 35.0% | |
| TAGAAAACGGCTATATTCCA+TGG | - | Chr3:92358152-92358171 | None:intergenic | 35.0% | |
| TCAAGAACCAAGATACAGAA+GGG | + | Chr3:92357898-92357917 | MsG0380017122.01.T01:CDS | 35.0% | |
| TCGCAACTTCAAGAATTAGA+CGG | + | Chr3:92357309-92357328 | MsG0380017122.01.T01:CDS | 35.0% | |
| TGATGTCTTTATGTCAAACG+TGG | - | Chr3:92357763-92357782 | None:intergenic | 35.0% | |
| TGGACAATGTTCCAAGTAAA+AGG | - | Chr3:92357463-92357482 | None:intergenic | 35.0% | |
| TGGTGTTTGTGCAAATAATC+CGG | + | Chr3:92357950-92357969 | MsG0380017122.01.T01:CDS | 35.0% | |
| TTCAAAACTGGCAGCAAAAT+GGG | + | Chr3:92358219-92358238 | MsG0380017122.01.T01:CDS | 35.0% | |
| TTCAAGAACCAAGATACAGA+AGG | + | Chr3:92357897-92357916 | MsG0380017122.01.T01:CDS | 35.0% | |
| TTGTAACCAGGAAGATAAGT+AGG | - | Chr3:92357876-92357895 | None:intergenic | 35.0% | |
| ! | AGGTATTTCCCATCGTATTT+TGG | - | Chr3:92357672-92357691 | None:intergenic | 35.0% |
| ! | ATCATTTGGAGCACTTAACA+TGG | - | Chr3:92357403-92357422 | None:intergenic | 35.0% |
| !! | TATACCTTTTGAGAGCTTCT+TGG | - | Chr3:92358738-92358757 | None:intergenic | 35.0% |
| !! | TTGGTGATGATCAATGTTCT+AGG | + | Chr3:92358057-92358076 | MsG0380017122.01.T01:intron | 35.0% |
| AAACGTGGGGATCACAATAT+TGG | - | Chr3:92357748-92357767 | None:intergenic | 40.0% | |
| AAGGAACTCGAGAATAGTTG+CGG | - | Chr3:92357286-92357305 | None:intergenic | 40.0% | |
| AATACCTACACAGTGTGGTT+AGG | + | Chr3:92357685-92357704 | MsG0380017122.01.T01:CDS | 40.0% | |
| AATTAGACGGTGAATCTGCT+AGG | + | Chr3:92357322-92357341 | MsG0380017122.01.T01:CDS | 40.0% | |
| AGTCACTAAGTTTCCATAGG+TGG | - | Chr3:92357223-92357242 | None:intergenic | 40.0% | |
| ATACCTACACAGTGTGGTTA+GGG | + | Chr3:92357686-92357705 | MsG0380017122.01.T01:CDS | 40.0% | |
| ATATCCTTGGCAGCAAAAAG+TGG | - | Chr3:92357435-92357454 | None:intergenic | 40.0% | |
| ATGCAGGATGATACATTGAC+CGG | + | Chr3:92358571-92358590 | MsG0380017122.01.T01:CDS | 40.0% | |
| ATTACAGGAACAAGTACAGG+TGG | + | Chr3:92357366-92357385 | MsG0380017122.01.T01:CDS | 40.0% | |
| CTAATAATCTCATTGGGCAC+TGG | + | Chr3:92358169-92358188 | MsG0380017122.01.T01:CDS | 40.0% | |
| CTTGAGTAACAGTAGCAAGA+TGG | - | Chr3:92358327-92358346 | None:intergenic | 40.0% | |
| GAAATCAACCATATCTCCAG+AGG | - | Chr3:92358305-92358324 | None:intergenic | 40.0% | |
| GCTATATTCCATGGGTTTGA+TGG | - | Chr3:92358143-92358162 | None:intergenic | 40.0% | |
| GTAAAAGGGCTTGATATCCT+TGG | - | Chr3:92357448-92357467 | None:intergenic | 40.0% | |
| GTCACTAAGTTTCCATAGGT+GGG | - | Chr3:92357222-92357241 | None:intergenic | 40.0% | |
| GTGATTACAGGAACAAGTAC+AGG | + | Chr3:92357363-92357382 | MsG0380017122.01.T01:CDS | 40.0% | |
| TAACGGGACCAAAATACGAT+GGG | + | Chr3:92357661-92357680 | MsG0380017122.01.T01:CDS | 40.0% | |
| TCAAAACTGGCAGCAAAATG+GGG | + | Chr3:92358220-92358239 | MsG0380017122.01.T01:CDS | 40.0% | |
| TGGTTCTTGAAGTTGTAACC+AGG | - | Chr3:92357888-92357907 | None:intergenic | 40.0% | |
| TTAACGGGACCAAAATACGA+TGG | + | Chr3:92357660-92357679 | MsG0380017122.01.T01:CDS | 40.0% | |
| ! | CAAAATGGGGTCTTTTGGAT+TGG | + | Chr3:92358233-92358252 | MsG0380017122.01.T01:CDS | 40.0% |
| ! | CTTTTATGCCATCAAACCCA+TGG | + | Chr3:92358132-92358151 | MsG0380017122.01.T01:CDS | 40.0% |
| ! | GGATATCAAGCCCTTTTACT+TGG | + | Chr3:92357449-92357468 | MsG0380017122.01.T01:CDS | 40.0% |
| ! | TAGTCAATCCTCTGGAGATA+TGG | + | Chr3:92358294-92358313 | MsG0380017122.01.T01:CDS | 40.0% |
| ! | TTGGTCTCCCCATTTTCAAT+AGG | - | Chr3:92358715-92358734 | None:intergenic | 40.0% |
| !! | ATCAAGGTCTTGTTAGTGTG+AGG | - | Chr3:92358934-92358953 | None:intergenic | 40.0% |
| !! | GTGACTATTCTAAGCATCGA+CGG | + | Chr3:92357237-92357256 | MsG0380017122.01.T01:CDS | 40.0% |
| !! | TCAAGGTCTTGTTAGTGTGA+GGG | - | Chr3:92358933-92358952 | None:intergenic | 40.0% |
| !!! | CTTTTGGATTGGTTAACCCA+CGG | + | Chr3:92358244-92358263 | MsG0380017122.01.T01:CDS | 40.0% |
| AACTTATGCAGGCACTTGCT+GGG | + | Chr3:92357612-92357631 | MsG0380017122.01.T01:intron | 45.0% | |
| AAGATAAGTAGGAGCAGCAG+AGG | - | Chr3:92357865-92357884 | None:intergenic | 45.0% | |
| ACTAAGTTTCCATAGGTGGG+AGG | - | Chr3:92357219-92357238 | None:intergenic | 45.0% | |
| AGGAACTCGAGAATAGTTGC+GGG | - | Chr3:92357285-92357304 | None:intergenic | 45.0% | |
| CACAAACACCACCATCAATG+AGG | - | Chr3:92357941-92357960 | None:intergenic | 45.0% | |
| CCAACCAAGAAGCTCTCAAA+AGG | + | Chr3:92358731-92358750 | MsG0380017122.01.T01:CDS | 45.0% | |
| CGTGAGTTCAACCTCATTGA+TGG | + | Chr3:92357927-92357946 | MsG0380017122.01.T01:CDS | 45.0% | |
| GAGTTCAACCTCATTGATGG+TGG | + | Chr3:92357930-92357949 | MsG0380017122.01.T01:CDS | 45.0% | |
| GTACAGTCCCTTCTGTATCT+TGG | - | Chr3:92357908-92357927 | None:intergenic | 45.0% | |
| TGGGAAATACCTACACAGTG+TGG | + | Chr3:92357680-92357699 | MsG0380017122.01.T01:CDS | 45.0% | |
| TGTGGCTGCATAAGTGCAAT+TGG | - | Chr3:92357537-92357556 | None:intergenic | 45.0% | |
| !! | ACTATTCTAAGCATCGACGG+TGG | + | Chr3:92357240-92357259 | MsG0380017122.01.T01:CDS | 45.0% |
| !! | CAAGGTCTTGTTAGTGTGAG+GGG | - | Chr3:92358932-92358951 | None:intergenic | 45.0% |
| !! | CCTTTTGAGAGCTTCTTGGT+TGG | - | Chr3:92358734-92358753 | None:intergenic | 45.0% |
| !!! | ATAAATATAATTTGTATTAA+CGG | + | Chr3:92357586-92357605 | MsG0380017122.01.T01:intron | 5.0% |
| AGAGTCGAGCATCCATGCAA+GGG | - | Chr3:92357824-92357843 | None:intergenic | 50.0% | |
| AGTGTGGTTAGGGAGAAGCT+TGG | + | Chr3:92357696-92357715 | MsG0380017122.01.T01:CDS | 50.0% | |
| CAAATTCAGCCTCCCACCTA+TGG | + | Chr3:92357207-92357226 | MsG0380017122.01.T01:CDS | 50.0% | |
| GAACTTATGCAGGCACTTGC+TGG | + | Chr3:92357611-92357630 | MsG0380017122.01.T01:intron | 50.0% | |
| GATCAAGAAAGCCCCTTGCA+TGG | + | Chr3:92357809-92357828 | MsG0380017122.01.T01:CDS | 50.0% | |
| GCTGCTCCTACTTATCTTCC+TGG | + | Chr3:92357867-92357886 | MsG0380017122.01.T01:CDS | 50.0% | |
| GTGTGGTTAGGGAGAAGCTT+GGG | + | Chr3:92357697-92357716 | MsG0380017122.01.T01:CDS | 50.0% | |
| TAAGGGAGTTGAACCACCGT+GGG | - | Chr3:92358263-92358282 | None:intergenic | 50.0% | |
| TCTCCCTAACCACACTGTGT+AGG | - | Chr3:92357692-92357711 | None:intergenic | 50.0% | |
| TGTGGTTAGGGAGAAGCTTG+GGG | + | Chr3:92357698-92357717 | MsG0380017122.01.T01:CDS | 50.0% | |
| TTAAGGGAGTTGAACCACCG+TGG | - | Chr3:92358264-92358283 | None:intergenic | 50.0% | |
| TTGCATGGATGCTCGACTCT+CGG | + | Chr3:92357824-92357843 | MsG0380017122.01.T01:CDS | 50.0% | |
| ! | ATCGACGGTGGTGGTATTAG+GGG | + | Chr3:92357252-92357271 | MsG0380017122.01.T01:CDS | 50.0% |
| ! | CATCGACGGTGGTGGTATTA+GGG | + | Chr3:92357251-92357270 | MsG0380017122.01.T01:CDS | 50.0% |
| ! | GGCAGCAAAATGGGGTCTTT+TGG | + | Chr3:92358228-92358247 | MsG0380017122.01.T01:CDS | 50.0% |
| !! | ATTCTAAGCATCGACGGTGG+TGG | + | Chr3:92357243-92357262 | MsG0380017122.01.T01:CDS | 50.0% |
| !! | TTGGATTGGTTAACCCACGG+TGG | + | Chr3:92358247-92358266 | MsG0380017122.01.T01:CDS | 50.0% |
| !!! | ACGTCCACTTTTTGCTGCCA+AGG | + | Chr3:92357428-92357447 | MsG0380017122.01.T01:CDS | 50.0% |
| GAGAGTCGAGCATCCATGCA+AGG | - | Chr3:92357825-92357844 | None:intergenic | 55.0% | |
| GAGTCGAGCATCCATGCAAG+GGG | - | Chr3:92357823-92357842 | None:intergenic | 55.0% | |
| ! | GCATCGACGGTGGTGGTATT+AGG | + | Chr3:92357250-92357269 | MsG0380017122.01.T01:CDS | 55.0% |
| ! | AGGCACTTGCTGGGACTGGT+GGG | + | Chr3:92357621-92357640 | MsG0380017122.01.T01:intron | 60.0% |
| ! | ATGCAGGCACTTGCTGGGAC+TGG | + | Chr3:92357617-92357636 | MsG0380017122.01.T01:intron | 60.0% |
| ! | CAGGCACTTGCTGGGACTGG+TGG | + | Chr3:92357620-92357639 | MsG0380017122.01.T01:intron | 65.0% |
| ! | GGCACTTGCTGGGACTGGTG+GGG | + | Chr3:92357622-92357641 | MsG0380017122.01.T01:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 92357180 | 92358957 | 92357180 | ID=MsG0380017122.01;Name=MsG0380017122.01 |
| Chr3 | mRNA | 92357180 | 92358957 | 92357180 | ID=MsG0380017122.01.T01;Parent=MsG0380017122.01;Name=MsG0380017122.01.T01;_AED=0.29;_eAED=0.29;_QI=0|0|0|1|1|1|5|0|421 |
| Chr3 | exon | 92357180 | 92357502 | 92357180 | ID=MsG0380017122.01.T01:exon:3465;Parent=MsG0380017122.01.T01 |
| Chr3 | exon | 92357623 | 92357971 | 92357623 | ID=MsG0380017122.01.T01:exon:3466;Parent=MsG0380017122.01.T01 |
| Chr3 | exon | 92358079 | 92358380 | 92358079 | ID=MsG0380017122.01.T01:exon:3467;Parent=MsG0380017122.01.T01 |
| Chr3 | exon | 92358537 | 92358752 | 92358537 | ID=MsG0380017122.01.T01:exon:3468;Parent=MsG0380017122.01.T01 |
| Chr3 | exon | 92358882 | 92358957 | 92358882 | ID=MsG0380017122.01.T01:exon:3469;Parent=MsG0380017122.01.T01 |
| Chr3 | CDS | 92357180 | 92357502 | 92357180 | ID=MsG0380017122.01.T01:cds;Parent=MsG0380017122.01.T01 |
| Chr3 | CDS | 92357623 | 92357971 | 92357623 | ID=MsG0380017122.01.T01:cds;Parent=MsG0380017122.01.T01 |
| Chr3 | CDS | 92358079 | 92358380 | 92358079 | ID=MsG0380017122.01.T01:cds;Parent=MsG0380017122.01.T01 |
| Chr3 | CDS | 92358537 | 92358752 | 92358537 | ID=MsG0380017122.01.T01:cds;Parent=MsG0380017122.01.T01 |
| Chr3 | CDS | 92358882 | 92358957 | 92358882 | ID=MsG0380017122.01.T01:cds;Parent=MsG0380017122.01.T01 |
| Gene Sequence |
| Protein sequence |
