AlfalfaGEDB | MsG0280008117.01

M. sativa cultivar ZhongmuNo.1 / MsG0280008117.01

KEGG: -
GO: -
PFAM: PF05678

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280008117.01.T01	XP_003594889.2	97.046	237	6	1	1	236	1	237	8.89E-165	464

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280008117.01.T01	G7INF7	97.046	237	6	1	1	236	1	237	4.25e-165	464

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180001050.01	MsG0280008117.01	0.825623	4.236366e-54	3.881870e-51
MsG0180003240.01	MsG0280008117.01	0.851546	8.269692e-61	1.679692e-57
MsG0180005697.01	MsG0280008117.01	0.836343	9.895446e-57	1.243592e-53
MsG0280008117.01	MsG0280008258.01	0.830686	2.554112e-55	2.710675e-52
MsG0280008117.01	MsG0280011041.01	0.823039	1.716907e-53	1.461835e-50
MsG0280008117.01	MsG0280011042.01	0.807322	5.350164e-50	2.971035e-47
MsG0280008117.01	MsG0280011053.01	0.834492	2.904892e-56	3.453042e-53
MsG0280008117.01	MsG0380011613.01	0.806657	7.395630e-50	4.036417e-47
MsG0280008117.01	MsG0380014920.01	0.821812	3.308181e-53	2.720133e-50
MsG0280008117.01	MsG0380016643.01	0.828437	8.994969e-55	8.940653e-52

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280008117.01.T01	MTR_2g035850	97.046	237	6	1	1	236	1	237	1.08e-168	464
MsG0280008117.01.T01	MTR_4g094698	50.000	134	44	6	1	131	1	114	2.47e-30	110

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 44 sgRNAs with CRISPR-Local

Find 44 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACACCTAGCGGCGACGACG+AGG	0.640819	2:-25623275	None:intergenic
AAGTGACTAAGCCATTTCCA+TGG	0.609099	2:+25623419	MsG0280008117.01.T01:CDS
ACTACCTTGTTGAAAGTTTA+AGG	0.076288	2:-25623314	None:intergenic
AGATCTTCTTCTAATTGGTT+TGG	0.337371	2:-25623152	None:intergenic
AGGAGCAAATTCAAGCGCCT+CGG	0.584501	2:+25623446	MsG0280008117.01.T01:CDS
AGTAACTTGGATGTTTCTGA+TGG	0.501901	2:+25623553	MsG0280008117.01.T01:CDS
AGTGACCAATTGACACCAAA+GGG	0.544491	2:+25623118	MsG0280008117.01.T01:CDS
ATACTATCAACAAACTCTCA+TGG	0.509978	2:+25622982	MsG0280008117.01.T01:CDS
ATCATAGTCTCTAATGGAAT+AGG	0.414200	2:-25623064	None:intergenic
ATTACCTTAAACTTTCAACA+AGG	0.690320	2:+25623310	MsG0280008117.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACTACCTTGTTGAAAGTTTA+AGG	-	Chr2:25623317-25623336	None:intergenic	30.0%
AGATCTTCTTCTAATTGGTT+TGG	-	Chr2:25623155-25623174	None:intergenic	30.0%
ATACTATCAACAAACTCTCA+TGG	+	Chr2:25622982-25623001	MsG0280008117.01.T01:CDS	30.0%
ATCATAGTCTCTAATGGAAT+AGG	-	Chr2:25623067-25623086	None:intergenic	30.0%
CTCAAAATCATAGTCTCTAA+TGG	-	Chr2:25623073-25623092	None:intergenic	30.0%
GATAGTATTGCATCCAATAT+TGG	-	Chr2:25622970-25622989	None:intergenic	30.0%
GTGTTTGTGTATGAATTTGT+TGG	-	Chr2:25623097-25623116	None:intergenic	30.0%
TCAGAAACATCCAAGTTACT+AGG	-	Chr2:25623553-25623572	None:intergenic	35.0%
TTGGATATATTACCACCCTT+TGG	-	Chr2:25623136-25623155	None:intergenic	35.0%
TTTGCATTGAGTAGTGTTGT+TGG	-	Chr2:25623196-25623215	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	25622938	25623648	25622938	ID=MsG0280008117.01;Name=MsG0280008117.01
Chr2	mRNA	25622938	25623648	25622938	ID=MsG0280008117.01.T01;Parent=MsG0280008117.01;Name=MsG0280008117.01.T01;_AED=0.43;_eAED=0.43;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|236
Chr2	exon	25622938	25623648	25622938	ID=MsG0280008117.01.T01:exon:14072;Parent=MsG0280008117.01.T01
Chr2	CDS	25622938	25623648	25622938	ID=MsG0280008117.01.T01:cds;Parent=MsG0280008117.01.T01

Gene Sequence

>MsG0280008117.01.T01

ATGAGTGGTACCATGACTGCTTCTACTGACCAATATTGGATGCAATACTATCAACAAACTCTCATGGATCATACTCTAAATCCACCTATAGAAAATTTCTCTGATTCAACTGTGATGACAACAAATCCTATTCCATTAGAGACTATGATTTTGAGCCCAACAAATTCATACACAAACACCAGTGACCAATTGACACCAAAGGGTGGTAATATATCCAAACCAATTAGAAGAAGATCTAGAGCTTCTAAGAGAACACCAACAACACTACTCAATGCAAATACAACCAATTTTAGACAACTTGTGCAACAATTCACAGGTTGTCCTAGTACAACTTTGTCCTCGTCGTCGCCGCTAGGTGTTCATAAAGGACCTATTACCTTAAACTTTCAACAAGGTAGTAGCAAACAGAATGTTCAACATGACACAACAGCTAGATTAATGTCACAACTTAGTAGCACAAGTTACAGTCAAGTTCATCATCAAGTGACTAAGCCATTTCCATGGAACAAGGAGCAAATTCAAGCGCCTCGGCAACAGCAGAGTGGTTATAACTCATTTGAATATGTCAAGAACAACAATTTTGTTCCGAATTCGAGTAACTCGTTGTCAAGGCCTAGTAACTTGGATGTTTCTGATGGTTTGGTTGTGGATAATGATTTTGGTTTGCATGATCTAACTGTTAATGAATTCTCCAATGATACTTTTATGTGA

Protein sequence

>MsG0280008117.01.T01

MSGTMTASTDQYWMQYYQQTLMDHTLNPPIENFSDSTVMTTNPIPLETMILSPTNSYTNTSDQLTPKGGNISKPIRRRSRASKRTPTTLLNANTTNFRQLVQQFTGCPSTTLSSSSPLGVHKGPITLNFQQGSSKQNVQHDTTARLMSQLSSTSYSQVHHQVTKPFPWNKEQIQAPRQQQSGYNSFEYVKNNNFVPNSSNSLSRPSNLDVSDGLVVDNDFGLHDLTVNEFSNDTFM*