Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017622.01.T01 | XP_013461938.1 | 96.053 | 532 | 1 | 1 | 1 | 512 | 1 | 532 | 0 | 1017 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017622.01.T01 | Q9LV21 | 84.328 | 536 | 60 | 2 | 1 | 512 | 1 | 536 | 0 | 911 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017622.01.T01 | A0A072V3N8 | 96.053 | 532 | 1 | 1 | 1 | 512 | 1 | 532 | 0.0 | 1017 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048289.01 | MsG0380017622.01 | 0.805803 | 1.118981e-49 | 5.975893e-47 |
| MsG0180003857.01 | MsG0380017622.01 | 0.806370 | 8.502956e-50 | 4.607068e-47 |
| MsG0380017331.01 | MsG0380017622.01 | 0.814700 | 1.348150e-51 | 9.110113e-49 |
| MsG0380017595.01 | MsG0380017622.01 | 0.909732 | 4.111808e-82 | 8.113431e-78 |
| MsG0380017622.01 | MsG0480023996.01 | 0.801195 | 1.009812e-48 | 4.792977e-46 |
| MsG0380017622.01 | MsG0780039944.01 | 0.820388 | 7.044131e-53 | 5.566281e-50 |
| MsG0380017622.01 | MsG0880044437.01 | 0.820791 | 5.691227e-53 | 4.547482e-50 |
| MsG0380017622.01 | MsG0880045553.01 | 0.830952 | 2.197761e-55 | 2.350808e-52 |
PPI
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017622.01.T01 | MTR_3g109925 | 96.053 | 532 | 1 | 1 | 1 | 512 | 1 | 532 | 0.0 | 1017 |
| MsG0380017622.01.T01 | MTR_3g109925 | 81.391 | 532 | 22 | 6 | 1 | 512 | 1 | 475 | 0.0 | 823 |
| MsG0380017622.01.T01 | MTR_8g105970 | 68.700 | 377 | 38 | 8 | 124 | 475 | 32 | 353 | 1.75e-163 | 468 |
| MsG0380017622.01.T01 | MTR_3g086330 | 35.564 | 523 | 303 | 9 | 14 | 510 | 17 | 531 | 2.16e-91 | 289 |
| MsG0380017622.01.T01 | MTR_7g113470 | 33.075 | 517 | 307 | 8 | 20 | 510 | 14 | 517 | 4.73e-79 | 257 |
| MsG0380017622.01.T01 | MTR_7g067470 | 33.268 | 511 | 302 | 8 | 26 | 510 | 20 | 517 | 2.98e-78 | 254 |
| MsG0380017622.01.T01 | MTR_8g088270 | 32.952 | 525 | 304 | 10 | 24 | 509 | 19 | 534 | 1.45e-74 | 245 |
| MsG0380017622.01.T01 | MTR_5g087560 | 31.311 | 511 | 311 | 9 | 28 | 509 | 27 | 526 | 2.81e-69 | 232 |
| MsG0380017622.01.T01 | MTR_2g013540 | 29.159 | 511 | 331 | 8 | 25 | 510 | 20 | 524 | 7.49e-64 | 217 |
| MsG0380017622.01.T01 | MTR_6g032870 | 28.180 | 511 | 333 | 6 | 23 | 509 | 20 | 520 | 3.48e-63 | 215 |
| MsG0380017622.01.T01 | MTR_1g030650 | 27.237 | 514 | 340 | 6 | 23 | 512 | 23 | 526 | 4.57e-63 | 215 |
| MsG0380017622.01.T01 | MTR_7g406870 | 27.519 | 516 | 327 | 13 | 29 | 509 | 22 | 525 | 8.17e-46 | 168 |
| MsG0380017622.01.T01 | MTR_2g013540 | 26.702 | 382 | 246 | 9 | 154 | 510 | 3 | 375 | 8.79e-27 | 112 |
| MsG0380017622.01.T01 | MTR_4g057020 | 54.808 | 104 | 13 | 1 | 294 | 397 | 54 | 123 | 3.73e-23 | 95.9 |
| MsG0380017622.01.T01 | MTR_7g406870 | 25.647 | 425 | 269 | 13 | 120 | 509 | 1 | 413 | 4.16e-23 | 102 |
| MsG0380017622.01.T01 | MTR_8g010750 | 25.432 | 405 | 212 | 12 | 27 | 383 | 30 | 392 | 3.75e-14 | 75.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017622.01.T01 | AT3G18190 | 84.328 | 536 | 60 | 2 | 1 | 512 | 1 | 536 | 0.0 | 911 |
| MsG0380017622.01.T01 | AT1G24510 | 36.699 | 515 | 293 | 8 | 21 | 510 | 25 | 531 | 6.50e-92 | 290 |
| MsG0380017622.01.T01 | AT1G24510 | 35.654 | 474 | 272 | 8 | 62 | 510 | 13 | 478 | 6.31e-77 | 250 |
| MsG0380017622.01.T01 | AT5G20890 | 31.853 | 518 | 314 | 8 | 20 | 511 | 14 | 518 | 6.97e-72 | 238 |
| MsG0380017622.01.T01 | AT1G24510 | 34.989 | 463 | 268 | 8 | 73 | 510 | 1 | 455 | 2.51e-71 | 234 |
| MsG0380017622.01.T01 | AT3G20050 | 32.203 | 531 | 312 | 10 | 18 | 509 | 13 | 534 | 8.76e-71 | 236 |
| MsG0380017622.01.T01 | AT3G11830 | 30.920 | 511 | 313 | 8 | 28 | 509 | 27 | 526 | 1.03e-66 | 225 |
| MsG0380017622.01.T01 | AT3G03960 | 28.435 | 524 | 339 | 8 | 14 | 512 | 17 | 529 | 3.78e-66 | 223 |
| MsG0380017622.01.T01 | AT3G11830 | 30.920 | 511 | 311 | 9 | 28 | 509 | 27 | 524 | 6.26e-65 | 220 |
| MsG0380017622.01.T01 | AT5G26360 | 29.941 | 511 | 327 | 8 | 25 | 510 | 20 | 524 | 2.27e-62 | 213 |
| MsG0380017622.01.T01 | AT5G16070 | 29.457 | 516 | 306 | 15 | 30 | 500 | 23 | 525 | 2.98e-48 | 175 |
| MsG0380017622.01.T01 | AT3G02530 | 28.627 | 517 | 310 | 14 | 30 | 500 | 23 | 526 | 1.13e-46 | 171 |
Find 117 sgRNAs with CRISPR-Local
Find 147 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGAAGATTGTGAAGATTTC+TGG | 0.204894 | 3:+98656433 | MsG0380017622.01.T01:CDS |
| TGTGAAGATTTCTGGTATTA+AGG | 0.209465 | 3:+98656441 | MsG0380017622.01.T01:CDS |
| TCTTGCTAAAGCTAAGATTT+TGG | 0.234466 | 3:+98656273 | MsG0380017622.01.T01:CDS |
| GATTTCTGGTATTAAGGATA+TGG | 0.239423 | 3:+98656447 | MsG0380017622.01.T01:CDS |
| ATCGTCTTTGCGTTTGTTAT+CGG | 0.257624 | 3:-98655393 | None:intergenic |
| AGGGATGATTAAGAAGATTA+AGG | 0.275419 | 3:+98656177 | MsG0380017622.01.T01:CDS |
| GCATTCTCAGCAAGGGTATA+TGG | 0.307049 | 3:-98656705 | None:intergenic |
| CTTGTGGAAGAGCTTTCTCT+TGG | 0.336541 | 3:+98656406 | MsG0380017622.01.T01:CDS |
| TCACGGAGATCCACCATTTC+CGG | 0.339036 | 3:-98655917 | None:intergenic |
| AGCAGCGGAGTCTTGAGATT+TGG | 0.347607 | 3:-98655603 | None:intergenic |
| CTCTGTTCTATATCTGTCTT+AGG | 0.348731 | 3:-98656091 | None:intergenic |
| TGTCAAGGCAATTGGGTGCT+TGG | 0.354279 | 3:+98656616 | MsG0380017622.01.T01:CDS |
| ATCGGTGTAGGATTCGGTTT+TGG | 0.362816 | 3:-98655375 | None:intergenic |
| TCTCACCGCCATGGCTGTTC+CGG | 0.362983 | 3:+98655760 | MsG0380017622.01.T01:CDS |
| GATAGAGCTGTCAAGGCAAT+TGG | 0.370145 | 3:+98656608 | MsG0380017622.01.T01:CDS |
| TTGTGGAAGAGCTTTCTCTT+GGG | 0.371995 | 3:+98656407 | MsG0380017622.01.T01:CDS |
| TTTGTTATCGGTGTAGGATT+CGG | 0.375261 | 3:-98655381 | None:intergenic |
| CATACCTTTGGGGCCGAGAC+TGG | 0.392090 | 3:-98655468 | None:intergenic |
| AATCTTAGCATTCTCCATTC+TGG | 0.394765 | 3:-98656041 | None:intergenic |
| GGAGGATCGGTGAGGGGCTG+CGG | 0.401126 | 3:-98655354 | None:intergenic |
| GTCAAGGCAATTGGGTGCTT+GGG | 0.415529 | 3:+98656617 | MsG0380017622.01.T01:CDS |
| CGATCCCGCTAGGCCGGAAA+TGG | 0.417675 | 3:+98655904 | MsG0380017622.01.T01:CDS |
| AGAACTGAATCAACAGCAAT+AGG | 0.421556 | 3:-98655872 | None:intergenic |
| AGCTCAGTAACAATTGCAAT+CGG | 0.423035 | 3:-98656738 | None:intergenic |
| AAATGCTCAATATTAGCAAT+AGG | 0.434996 | 3:-98656355 | None:intergenic |
| ATTTCTGGTATTAAGGATAT+GGG | 0.441434 | 3:+98656448 | MsG0380017622.01.T01:CDS |
| TTTGCGTTTGTTATCGGTGT+AGG | 0.444094 | 3:-98655387 | None:intergenic |
| TAGCACTTCGTTGAATAGTA+AGG | 0.456781 | 3:+98655820 | MsG0380017622.01.T01:CDS |
| TCACGATCAGTGAGTTCAAC+CGG | 0.461390 | 3:-98655779 | None:intergenic |
| AACGCCGTTCGCACCAGTCT+CGG | 0.462746 | 3:+98655455 | MsG0380017622.01.T01:CDS |
| ACCACAACTGTGCTTGTTCG+TGG | 0.463002 | 3:+98656475 | MsG0380017622.01.T01:CDS |
| TACTGAGCTTGTGAAGGGCT+TGG | 0.463815 | 3:+98655979 | MsG0380017622.01.T01:CDS |
| GTGATTATTCTCAGATGGAT+AGG | 0.464278 | 3:+98656125 | MsG0380017622.01.T01:CDS |
| CAAGACTCCGCTGCTGGTGA+TGG | 0.468281 | 3:+98655611 | MsG0380017622.01.T01:CDS |
| ATTAAGAAGATTAAGGCAAC+CGG | 0.476085 | 3:+98656184 | MsG0380017622.01.T01:CDS |
| GAATGTGGTGCAGCCATTGC+TGG | 0.481414 | 3:+98656839 | MsG0380017622.01.T01:CDS |
| GAAGAGCTTTCTCTTGGGGA+TGG | 0.486289 | 3:+98656412 | MsG0380017622.01.T01:CDS |
| TCCACCATTTCCGGCCTAGC+GGG | 0.488011 | 3:-98655908 | None:intergenic |
| GCAATTGGGTGCTTGGGCTA+AGG | 0.488468 | 3:+98656623 | MsG0380017622.01.T01:CDS |
| AGGCAAACAATTAAGAGTCT+TGG | 0.489277 | 3:-98656335 | None:intergenic |
| TGTCTCCTCCTTCTCTCTCA+TGG | 0.491398 | 3:+98655677 | MsG0380017622.01.T01:CDS |
| TGTGGAAGAGCTTTCTCTTG+GGG | 0.491536 | 3:+98656408 | MsG0380017622.01.T01:CDS |
| TATACCCTTGCTGAGAATGC+AGG | 0.493053 | 3:+98656708 | MsG0380017622.01.T01:CDS |
| CAGTCTCGGCCCCAAAGGTA+TGG | 0.493521 | 3:+98655469 | MsG0380017622.01.T01:CDS |
| AATCAACAACACATTACAAC+CGG | 0.494792 | 3:-98656203 | None:intergenic |
| CTGAGGAATCGTCATGCTAA+AGG | 0.500255 | 3:+98656759 | MsG0380017622.01.T01:CDS |
| AACGGCGTTAGCGACGGAAC+GGG | 0.500736 | 3:-98655441 | None:intergenic |
| TGTCATCGATCCCGCTAGGC+CGG | 0.501041 | 3:+98655898 | MsG0380017622.01.T01:CDS |
| TCAACACTGGAATCAATGTC+AGG | 0.507995 | 3:+98656787 | MsG0380017622.01.T01:CDS |
| AAATCTCAAGACTCCGCTGC+TGG | 0.512750 | 3:+98655605 | MsG0380017622.01.T01:CDS |
| ATAGAGCTGTCAAGGCAATT+GGG | 0.513984 | 3:+98656609 | MsG0380017622.01.T01:CDS |
| GATTGCAGGTGGTGGTGCTC+CGG | 0.514051 | 3:+98656584 | MsG0380017622.01.T01:intron |
| TGCCTTGACAGCTCTATCTC+CGG | 0.516484 | 3:-98656603 | None:intergenic |
| GTTGGTGATGATAACTTCGT+TGG | 0.525584 | 3:-98655513 | None:intergenic |
| GGAACGGGCGGCGATGATGT+TGG | 0.529719 | 3:-98655426 | None:intergenic |
| TCCCGCTAGGCCGGAAATGG+TGG | 0.531201 | 3:+98655907 | MsG0380017622.01.T01:CDS |
| AAGAGCTTTCTCTTGGGGAT+GGG | 0.531234 | 3:+98656413 | MsG0380017622.01.T01:CDS |
| AACTTGCATCTTGTTGAGGA+TGG | 0.540091 | 3:-98655546 | None:intergenic |
| GGTTAGTGATTATTCTCAGA+TGG | 0.543811 | 3:+98656120 | MsG0380017622.01.T01:CDS |
| ACATTTCTCGAGAAGTGCTC+CGG | 0.552049 | 3:-98655657 | None:intergenic |
| CGGCGATGATGTTGGATTGA+CGG | 0.559941 | 3:-98655418 | None:intergenic |
| GATGATAACTTCGTTGGAAG+AGG | 0.560445 | 3:-98655507 | None:intergenic |
| CTCCGGAGATAGAGCTGTCA+AGG | 0.563162 | 3:+98656601 | MsG0380017622.01.T01:CDS |
| GAACGGCGTTAGCGACGGAA+CGG | 0.564350 | 3:-98655442 | None:intergenic |
| GGGGCCGAGACTGGTGCGAA+CGG | 0.565754 | 3:-98655459 | None:intergenic |
| AGTGAATCAGAGATAACAGT+AGG | 0.569565 | 3:-98655707 | None:intergenic |
| AAGGTTAGTCATGCTGCTGG+TGG | 0.570337 | 3:+98656013 | MsG0380017622.01.T01:CDS |
| GGCGATGACAACAACGGTGG+TGG | 0.571260 | 3:-98655636 | None:intergenic |
| CGCACCAGTCTCGGCCCCAA+AGG | 0.572245 | 3:+98655464 | MsG0380017622.01.T01:CDS |
| CCTCACACACTCTGTTGCCA+AGG | 0.573445 | 3:-98656880 | None:intergenic |
| TGGAACAACTTCAAGTGCCT+CGG | 0.574575 | 3:-98656685 | None:intergenic |
| GCTCAGTAACAATTGCAATC+GGG | 0.575791 | 3:-98656737 | None:intergenic |
| TCTCTGTCATCGATCCCGCT+AGG | 0.576821 | 3:+98655894 | MsG0380017622.01.T01:CDS |
| ACCACCGTTGTTGTCATCGC+CGG | 0.577312 | 3:+98655638 | MsG0380017622.01.T01:CDS |
| GAAGAACTTGCATCTTGTTG+AGG | 0.580248 | 3:-98655550 | None:intergenic |
| GGCGTTAGCGACGGAACGGG+CGG | 0.589560 | 3:-98655438 | None:intergenic |
| GTTGGGTTATGCTGATCTTG+TGG | 0.590393 | 3:+98656390 | MsG0380017622.01.T01:CDS |
| GGTGGTTCCATCACCAGCAG+CGG | 0.591723 | 3:-98655618 | None:intergenic |
| GAATACCATGAGAGAGAAGG+AGG | 0.591885 | 3:-98655682 | None:intergenic |
| GCACTTGTGCTAACCAGCAA+TGG | 0.592202 | 3:-98656852 | None:intergenic |
| TCAAACCTGCATTCTCAGCA+AGG | 0.593910 | 3:-98656713 | None:intergenic |
| GAGTTCAACCGGAACAGCCA+TGG | 0.594130 | 3:-98655768 | None:intergenic |
| CTGTATTCGTGCATTTGCCG+AGG | 0.594695 | 3:+98656668 | MsG0380017622.01.T01:CDS |
| GGTGCGAACGGCGTTAGCGA+CGG | 0.594895 | 3:-98655447 | None:intergenic |
| GGATGATACTGAGCTTGTGA+AGG | 0.595971 | 3:+98655973 | MsG0380017622.01.T01:CDS |
| TTAGCATTCTCCATTCTGGT+AGG | 0.596904 | 3:-98656037 | None:intergenic |
| ACACTCTGTTGCCAAGGTGA+TGG | 0.598855 | 3:-98656874 | None:intergenic |
| TGCTGGTGGACCTACCAGAA+TGG | 0.600235 | 3:+98656027 | MsG0380017622.01.T01:CDS |
| GCTAAAGGTGAGATCAACAC+TGG | 0.604820 | 3:+98656774 | MsG0380017622.01.T01:CDS |
| TGTTCTATATCTGTCTTAGG+AGG | 0.605667 | 3:-98656088 | None:intergenic |
| GGTGAATACCATGAGAGAGA+AGG | 0.606764 | 3:-98655685 | None:intergenic |
| GAGGATGGTAGCGCCGTCGT+TGG | 0.607730 | 3:-98655531 | None:intergenic |
| TTGCAATTGTTACTGAGCTG+AGG | 0.612866 | 3:+98656742 | MsG0380017622.01.T01:CDS |
| TCCACGAACAAGCACAGTTG+TGG | 0.612984 | 3:-98656476 | None:intergenic |
| GCTGCACCACATTCTCCTCA+AGG | 0.613760 | 3:-98656830 | None:intergenic |
| TAGCACAAGTGCCATCACCT+TGG | 0.618089 | 3:+98656863 | MsG0380017622.01.T01:CDS |
| TCAAATTACAAACATCCTTG+AGG | 0.621720 | 3:+98656815 | MsG0380017622.01.T01:CDS |
| AAGAAGGTTAGTCATGCTGC+TGG | 0.624743 | 3:+98656010 | MsG0380017622.01.T01:CDS |
| ACTGGAATCAATGTCAGGAA+AGG | 0.625427 | 3:+98656792 | MsG0380017622.01.T01:CDS |
| AAACATCCTTGAGGAGAATG+TGG | 0.628033 | 3:+98656824 | MsG0380017622.01.T01:CDS |
| TCTTAACAATCTTCACATCA+CGG | 0.628490 | 3:-98655934 | None:intergenic |
| TGTTGATGTTCTCACCGCCA+TGG | 0.628840 | 3:+98655751 | MsG0380017622.01.T01:CDS |
| AACATCAACAGCTTTAACAG+AGG | 0.629483 | 3:-98655738 | None:intergenic |
| GTGAAGATTGTTAAGAAGCT+CGG | 0.630785 | 3:+98655941 | MsG0380017622.01.T01:CDS |
| TAAGAAGCTCGGTGGAACAG+TGG | 0.641496 | 3:+98655952 | MsG0380017622.01.T01:CDS |
| ATCCACCATTTCCGGCCTAG+CGG | 0.644279 | 3:-98655909 | None:intergenic |
| GATGATACTGAGCTTGTGAA+GGG | 0.647045 | 3:+98655974 | MsG0380017622.01.T01:CDS |
| GTGAATCAGAGATAACAGTA+GGG | 0.649997 | 3:-98655706 | None:intergenic |
| CCTTGGCAACAGAGTGTGTG+AGG | 0.652881 | 3:+98656880 | MsG0380017622.01.T01:CDS |
| CAAACCTGCATTCTCAGCAA+GGG | 0.653006 | 3:-98656712 | None:intergenic |
| AGATATAGAACAGAGTATTG+TGG | 0.666081 | 3:+98656099 | MsG0380017622.01.T01:CDS |
| GAAGTTATCATCACCAACGA+CGG | 0.680075 | 3:+98655518 | MsG0380017622.01.T01:CDS |
| TTCAACCGGAACAGCCATGG+CGG | 0.690129 | 3:-98655765 | None:intergenic |
| AAGATTGTTAAGAAGCTCGG+TGG | 0.695277 | 3:+98655944 | MsG0380017622.01.T01:CDS |
| TGCTCCGGCGATGACAACAA+CGG | 0.714797 | 3:-98655642 | None:intergenic |
| TCCGGCGATGACAACAACGG+TGG | 0.732056 | 3:-98655639 | None:intergenic |
| TTGATGATATTGTAACTGTG+AGG | 0.759737 | 3:+98656916 | MsG0380017622.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AAATGCTCAATATTAGCAAT+AGG | - | Chr3:98656358-98656377 | None:intergenic | 25.0% |
| !!! | ATTTCTGGTATTAAGGATAT+GGG | + | Chr3:98656448-98656467 | MsG0380017622.01.T01:CDS | 25.0% |
| AATCAACAACACATTACAAC+CGG | - | Chr3:98656206-98656225 | None:intergenic | 30.0% | |
| AGGGATGATTAAGAAGATTA+AGG | + | Chr3:98656177-98656196 | MsG0380017622.01.T01:CDS | 30.0% | |
| ATTAAGAAGATTAAGGCAAC+CGG | + | Chr3:98656184-98656203 | MsG0380017622.01.T01:CDS | 30.0% | |
| TCAAATTACAAACATCCTTG+AGG | + | Chr3:98656815-98656834 | MsG0380017622.01.T01:CDS | 30.0% | |
| TCTTAACAATCTTCACATCA+CGG | - | Chr3:98655937-98655956 | None:intergenic | 30.0% | |
| ! | AAGAGAGGAGTTACATTTTA+GGG | + | Chr3:98656158-98656177 | MsG0380017622.01.T01:CDS | 30.0% |
| ! | ATCATTTTGTCCATACCTTT+GGG | - | Chr3:98655482-98655501 | None:intergenic | 30.0% |
| ! | TCTTGCTAAAGCTAAGATTT+TGG | + | Chr3:98656273-98656292 | MsG0380017622.01.T01:CDS | 30.0% |
| ! | TTGATGATATTGTAACTGTG+AGG | + | Chr3:98656916-98656935 | MsG0380017622.01.T01:CDS | 30.0% |
| !! | AGATATAGAACAGAGTATTG+TGG | + | Chr3:98656099-98656118 | MsG0380017622.01.T01:CDS | 30.0% |
| !! | GATTTCTGGTATTAAGGATA+TGG | + | Chr3:98656447-98656466 | MsG0380017622.01.T01:CDS | 30.0% |
| !! | TGTGAAGATTTCTGGTATTA+AGG | + | Chr3:98656441-98656460 | MsG0380017622.01.T01:CDS | 30.0% |
| AATCTTAGCATTCTCCATTC+TGG | - | Chr3:98656044-98656063 | None:intergenic | 35.0% | |
| AGAACTGAATCAACAGCAAT+AGG | - | Chr3:98655875-98655894 | None:intergenic | 35.0% | |
| AGCTCAGTAACAATTGCAAT+CGG | - | Chr3:98656741-98656760 | None:intergenic | 35.0% | |
| AGGCAAACAATTAAGAGTCT+TGG | - | Chr3:98656338-98656357 | None:intergenic | 35.0% | |
| AGTGAATCAGAGATAACAGT+AGG | - | Chr3:98655710-98655729 | None:intergenic | 35.0% | |
| CTCTGTTCTATATCTGTCTT+AGG | - | Chr3:98656094-98656113 | None:intergenic | 35.0% | |
| GGTTAGTGATTATTCTCAGA+TGG | + | Chr3:98656120-98656139 | MsG0380017622.01.T01:CDS | 35.0% | |
| GTGAAGATTGTTAAGAAGCT+CGG | + | Chr3:98655941-98655960 | MsG0380017622.01.T01:CDS | 35.0% | |
| GTGAATCAGAGATAACAGTA+GGG | - | Chr3:98655709-98655728 | None:intergenic | 35.0% | |
| GTGATTATTCTCAGATGGAT+AGG | + | Chr3:98656125-98656144 | MsG0380017622.01.T01:CDS | 35.0% | |
| TAGCACTTCGTTGAATAGTA+AGG | + | Chr3:98655820-98655839 | MsG0380017622.01.T01:CDS | 35.0% | |
| TGTTCTATATCTGTCTTAGG+AGG | - | Chr3:98656091-98656110 | None:intergenic | 35.0% | |
| ! | AACATCAACAGCTTTAACAG+AGG | - | Chr3:98655741-98655760 | None:intergenic | 35.0% |
| ! | GAAGAGAGGAGTTACATTTT+AGG | + | Chr3:98656157-98656176 | MsG0380017622.01.T01:CDS | 35.0% |
| ! | GATCATTTTGTCCATACCTT+TGG | - | Chr3:98655483-98655502 | None:intergenic | 35.0% |
| ! | TCAGATGGATAGGATTTTGA+AGG | + | Chr3:98656135-98656154 | MsG0380017622.01.T01:CDS | 35.0% |
| ! | TCATTTTGTCCATACCTTTG+GGG | - | Chr3:98655481-98655500 | None:intergenic | 35.0% |
| ! | TTTGTTATCGGTGTAGGATT+CGG | - | Chr3:98655384-98655403 | None:intergenic | 35.0% |
| !! | ATAGGATTTTGAAGGAAGAG+AGG | + | Chr3:98656143-98656162 | MsG0380017622.01.T01:CDS | 35.0% |
| !! | ATCGTCTTTGCGTTTGTTAT+CGG | - | Chr3:98655396-98655415 | None:intergenic | 35.0% |
| AAACATCCTTGAGGAGAATG+TGG | + | Chr3:98656824-98656843 | MsG0380017622.01.T01:CDS | 40.0% | |
| AACTTGCATCTTGTTGAGGA+TGG | - | Chr3:98655549-98655568 | None:intergenic | 40.0% | |
| AAGATTGTTAAGAAGCTCGG+TGG | + | Chr3:98655944-98655963 | MsG0380017622.01.T01:CDS | 40.0% | |
| ACCTGCAATCAAAAACCTCT+TGG | - | Chr3:98656574-98656593 | None:intergenic | 40.0% | |
| ACTGGAATCAATGTCAGGAA+AGG | + | Chr3:98656792-98656811 | MsG0380017622.01.T01:CDS | 40.0% | |
| ATAGAGCTGTCAAGGCAATT+GGG | + | Chr3:98656609-98656628 | MsG0380017622.01.T01:CDS | 40.0% | |
| CATGATGCTTTGTGTGTGTT+AGG | + | Chr3:98656538-98656557 | MsG0380017622.01.T01:intron | 40.0% | |
| CTTTGTGTGTGTTAGGTGTT+TGG | + | Chr3:98656545-98656564 | MsG0380017622.01.T01:intron | 40.0% | |
| GAAGAACTTGCATCTTGTTG+AGG | - | Chr3:98655553-98655572 | None:intergenic | 40.0% | |
| GAAGTTATCATCACCAACGA+CGG | + | Chr3:98655518-98655537 | MsG0380017622.01.T01:CDS | 40.0% | |
| GATGATAACTTCGTTGGAAG+AGG | - | Chr3:98655510-98655529 | None:intergenic | 40.0% | |
| GATGATACTGAGCTTGTGAA+GGG | + | Chr3:98655974-98655993 | MsG0380017622.01.T01:CDS | 40.0% | |
| GCTCAGTAACAATTGCAATC+GGG | - | Chr3:98656740-98656759 | None:intergenic | 40.0% | |
| GGGAAGATTGTGAAGATTTC+TGG | + | Chr3:98656433-98656452 | MsG0380017622.01.T01:CDS | 40.0% | |
| TCAACACTGGAATCAATGTC+AGG | + | Chr3:98656787-98656806 | MsG0380017622.01.T01:CDS | 40.0% | |
| TTAGCATTCTCCATTCTGGT+AGG | - | Chr3:98656040-98656059 | None:intergenic | 40.0% | |
| TTGCAATTGTTACTGAGCTG+AGG | + | Chr3:98656742-98656761 | MsG0380017622.01.T01:CDS | 40.0% | |
| TTGTGGAAGAGCTTTCTCTT+GGG | + | Chr3:98656407-98656426 | MsG0380017622.01.T01:CDS | 40.0% | |
| ! | CATTTTCGTGCTGAGAAGTT+GGG | + | Chr3:98656373-98656392 | MsG0380017622.01.T01:CDS | 40.0% |
| ! | GAGTTCAACGAGCATTTTAG+CGG | - | Chr3:98655582-98655601 | None:intergenic | 40.0% |
| !! | AAGAGGTTTTTGATTGCAGG+TGG | + | Chr3:98656573-98656592 | MsG0380017622.01.T01:intron | 40.0% |
| !! | GGGCTTGGTTTTTGATAAGA+AGG | + | Chr3:98655994-98656013 | MsG0380017622.01.T01:CDS | 40.0% |
| !! | GTTGGTGATGATAACTTCGT+TGG | - | Chr3:98655516-98655535 | None:intergenic | 40.0% |
| !! | TTTGCGTTTGTTATCGGTGT+AGG | - | Chr3:98655390-98655409 | None:intergenic | 40.0% |
| AAGAGCTTTCTCTTGGGGAT+GGG | + | Chr3:98656413-98656432 | MsG0380017622.01.T01:CDS | 45.0% | |
| CAAACCTGCATTCTCAGCAA+GGG | - | Chr3:98656715-98656734 | None:intergenic | 45.0% | |
| CTGAGGAATCGTCATGCTAA+AGG | + | Chr3:98656759-98656778 | MsG0380017622.01.T01:CDS | 45.0% | |
| CTTGTGGAAGAGCTTTCTCT+TGG | + | Chr3:98656406-98656425 | MsG0380017622.01.T01:CDS | 45.0% | |
| GAATACCATGAGAGAGAAGG+AGG | - | Chr3:98655685-98655704 | None:intergenic | 45.0% | |
| GATAGAGCTGTCAAGGCAAT+TGG | + | Chr3:98656608-98656627 | MsG0380017622.01.T01:CDS | 45.0% | |
| GCTAAAGGTGAGATCAACAC+TGG | + | Chr3:98656774-98656793 | MsG0380017622.01.T01:CDS | 45.0% | |
| GGATGATACTGAGCTTGTGA+AGG | + | Chr3:98655973-98655992 | MsG0380017622.01.T01:CDS | 45.0% | |
| GGTGAATACCATGAGAGAGA+AGG | - | Chr3:98655688-98655707 | None:intergenic | 45.0% | |
| GTTGGGTTATGCTGATCTTG+TGG | + | Chr3:98656390-98656409 | MsG0380017622.01.T01:CDS | 45.0% | |
| TATACCCTTGCTGAGAATGC+AGG | + | Chr3:98656708-98656727 | MsG0380017622.01.T01:CDS | 45.0% | |
| TCAAACCTGCATTCTCAGCA+AGG | - | Chr3:98656716-98656735 | None:intergenic | 45.0% | |
| TCACGATCAGTGAGTTCAAC+CGG | - | Chr3:98655782-98655801 | None:intergenic | 45.0% | |
| TGGAACAACTTCAAGTGCCT+CGG | - | Chr3:98656688-98656707 | None:intergenic | 45.0% | |
| TGTGGAAGAGCTTTCTCTTG+GGG | + | Chr3:98656408-98656427 | MsG0380017622.01.T01:CDS | 45.0% | |
| TTAGGTGTTTGGTTGCCAAG+AGG | + | Chr3:98656556-98656575 | MsG0380017622.01.T01:intron | 45.0% | |
| ! | AAGAAGGTTAGTCATGCTGC+TGG | + | Chr3:98656010-98656029 | MsG0380017622.01.T01:CDS | 45.0% |
| ! | AAGGTTTTGCATGGGATGGA+GGG | + | Chr3:98656642-98656661 | MsG0380017622.01.T01:CDS | 45.0% |
| ! | CTTGGGCTAAGGTTTTGCAT+GGG | + | Chr3:98656634-98656653 | MsG0380017622.01.T01:CDS | 45.0% |
| ! | GCATTCTCAGCAAGGGTATA+TGG | - | Chr3:98656708-98656727 | None:intergenic | 45.0% |
| ! | GCATTTTCGTGCTGAGAAGT+TGG | + | Chr3:98656372-98656391 | MsG0380017622.01.T01:CDS | 45.0% |
| ! | TAAGGTTTTGCATGGGATGG+AGG | + | Chr3:98656641-98656660 | MsG0380017622.01.T01:CDS | 45.0% |
| !! | ACATTTCTCGAGAAGTGCTC+CGG | - | Chr3:98655660-98655679 | None:intergenic | 45.0% |
| !! | AGGTTTTTGATTGCAGGTGG+TGG | + | Chr3:98656576-98656595 | MsG0380017622.01.T01:intron | 45.0% |
| !! | ATCGGTGTAGGATTCGGTTT+TGG | - | Chr3:98655378-98655397 | None:intergenic | 45.0% |
| !! | GCCAAGAGGTTTTTGATTGC+AGG | + | Chr3:98656570-98656589 | MsG0380017622.01.T01:intron | 45.0% |
| !! | TTCAACGAGCATTTTAGCGG+CGG | - | Chr3:98655579-98655598 | None:intergenic | 45.0% |
| !!! | AGGATTCGGTTTTGGAGGAT+CGG | - | Chr3:98655370-98655389 | None:intergenic | 45.0% |
| AAATCTCAAGACTCCGCTGC+TGG | + | Chr3:98655605-98655624 | MsG0380017622.01.T01:CDS | 50.0% | |
| ACACTCTGTTGCCAAGGTGA+TGG | - | Chr3:98656877-98656896 | None:intergenic | 50.0% | |
| ACCACAACTGTGCTTGTTCG+TGG | + | Chr3:98656475-98656494 | MsG0380017622.01.T01:CDS | 50.0% | |
| AGCAGCGGAGTCTTGAGATT+TGG | - | Chr3:98655606-98655625 | None:intergenic | 50.0% | |
| CGGCGATGATGTTGGATTGA+CGG | - | Chr3:98655421-98655440 | None:intergenic | 50.0% | |
| CTGTATTCGTGCATTTGCCG+AGG | + | Chr3:98656668-98656687 | MsG0380017622.01.T01:CDS | 50.0% | |
| GAAGAGCTTTCTCTTGGGGA+TGG | + | Chr3:98656412-98656431 | MsG0380017622.01.T01:CDS | 50.0% | |
| GCACTTGTGCTAACCAGCAA+TGG | - | Chr3:98656855-98656874 | None:intergenic | 50.0% | |
| GTCAAGGCAATTGGGTGCTT+GGG | + | Chr3:98656617-98656636 | MsG0380017622.01.T01:CDS | 50.0% | |
| TACTGAGCTTGTGAAGGGCT+TGG | + | Chr3:98655979-98655998 | MsG0380017622.01.T01:CDS | 50.0% | |
| TAGCACAAGTGCCATCACCT+TGG | + | Chr3:98656863-98656882 | MsG0380017622.01.T01:CDS | 50.0% | |
| TCACGGAGATCCACCATTTC+CGG | - | Chr3:98655920-98655939 | None:intergenic | 50.0% | |
| TCCACGAACAAGCACAGTTG+TGG | - | Chr3:98656479-98656498 | None:intergenic | 50.0% | |
| TGCCTTGACAGCTCTATCTC+CGG | - | Chr3:98656606-98656625 | None:intergenic | 50.0% | |
| TGTCAAGGCAATTGGGTGCT+TGG | + | Chr3:98656616-98656635 | MsG0380017622.01.T01:CDS | 50.0% | |
| TGTCTCCTCCTTCTCTCTCA+TGG | + | Chr3:98655677-98655696 | MsG0380017622.01.T01:CDS | 50.0% | |
| TGTTGATGTTCTCACCGCCA+TGG | + | Chr3:98655751-98655770 | MsG0380017622.01.T01:CDS | 50.0% | |
| ! | AAGGTTAGTCATGCTGCTGG+TGG | + | Chr3:98656013-98656032 | MsG0380017622.01.T01:CDS | 50.0% |
| ! | GCTTGGGCTAAGGTTTTGCA+TGG | + | Chr3:98656633-98656652 | MsG0380017622.01.T01:CDS | 50.0% |
| ! | GGCTAAGGTTTTGCATGGGA+TGG | + | Chr3:98656638-98656657 | MsG0380017622.01.T01:CDS | 50.0% |
| ! | TAAGAAGCTCGGTGGAACAG+TGG | + | Chr3:98655952-98655971 | MsG0380017622.01.T01:CDS | 50.0% |
| !! | GGTGTAGGATTCGGTTTTGG+AGG | - | Chr3:98655375-98655394 | None:intergenic | 50.0% |
| !! | TCAACGAGCATTTTAGCGGC+GGG | - | Chr3:98655578-98655597 | None:intergenic | 50.0% |
| ACCACCGTTGTTGTCATCGC+CGG | + | Chr3:98655638-98655657 | MsG0380017622.01.T01:CDS | 55.0% | |
| ATCCACCATTTCCGGCCTAG+CGG | - | Chr3:98655912-98655931 | None:intergenic | 55.0% | |
| CCTCACACACTCTGTTGCCA+AGG | - | Chr3:98656883-98656902 | None:intergenic | 55.0% | |
| CCTTGGCAACAGAGTGTGTG+AGG | + | Chr3:98656880-98656899 | MsG0380017622.01.T01:CDS | 55.0% | |
| CTCCGGAGATAGAGCTGTCA+AGG | + | Chr3:98656601-98656620 | MsG0380017622.01.T01:CDS | 55.0% | |
| GAATGTGGTGCAGCCATTGC+TGG | + | Chr3:98656839-98656858 | MsG0380017622.01.T01:CDS | 55.0% | |
| GAGTTCAACCGGAACAGCCA+TGG | - | Chr3:98655771-98655790 | None:intergenic | 55.0% | |
| GCAATTGGGTGCTTGGGCTA+AGG | + | Chr3:98656623-98656642 | MsG0380017622.01.T01:CDS | 55.0% | |
| GCTGCACCACATTCTCCTCA+AGG | - | Chr3:98656833-98656852 | None:intergenic | 55.0% | |
| TCTCTGTCATCGATCCCGCT+AGG | + | Chr3:98655894-98655913 | MsG0380017622.01.T01:CDS | 55.0% | |
| TGCTCCGGCGATGACAACAA+CGG | - | Chr3:98655645-98655664 | None:intergenic | 55.0% | |
| TTCAACCGGAACAGCCATGG+CGG | - | Chr3:98655768-98655787 | None:intergenic | 55.0% | |
| ! | TGCTGGTGGACCTACCAGAA+TGG | + | Chr3:98656027-98656046 | MsG0380017622.01.T01:CDS | 55.0% |
| !!! | CGGTTTTGGAGGATCGGTGA+GGG | - | Chr3:98655364-98655383 | None:intergenic | 55.0% |
| !!! | GGTTTTGGAGGATCGGTGAG+GGG | - | Chr3:98655363-98655382 | None:intergenic | 55.0% |
| !!! | TCGGTTTTGGAGGATCGGTG+AGG | - | Chr3:98655365-98655384 | None:intergenic | 55.0% |
| AACGCCGTTCGCACCAGTCT+CGG | + | Chr3:98655455-98655474 | MsG0380017622.01.T01:CDS | 60.0% | |
| AACGGCGTTAGCGACGGAAC+GGG | - | Chr3:98655444-98655463 | None:intergenic | 60.0% | |
| CAAGACTCCGCTGCTGGTGA+TGG | + | Chr3:98655611-98655630 | MsG0380017622.01.T01:CDS | 60.0% | |
| CAGTCTCGGCCCCAAAGGTA+TGG | + | Chr3:98655469-98655488 | MsG0380017622.01.T01:CDS | 60.0% | |
| GAACGGCGTTAGCGACGGAA+CGG | - | Chr3:98655445-98655464 | None:intergenic | 60.0% | |
| GGCGATGACAACAACGGTGG+TGG | - | Chr3:98655639-98655658 | None:intergenic | 60.0% | |
| GGTGGTTCCATCACCAGCAG+CGG | - | Chr3:98655621-98655640 | None:intergenic | 60.0% | |
| TCCACCATTTCCGGCCTAGC+GGG | - | Chr3:98655911-98655930 | None:intergenic | 60.0% | |
| TCCGGCGATGACAACAACGG+TGG | - | Chr3:98655642-98655661 | None:intergenic | 60.0% | |
| TCTCACCGCCATGGCTGTTC+CGG | + | Chr3:98655760-98655779 | MsG0380017622.01.T01:CDS | 60.0% | |
| TGTCATCGATCCCGCTAGGC+CGG | + | Chr3:98655898-98655917 | MsG0380017622.01.T01:CDS | 60.0% | |
| ! | GATTGCAGGTGGTGGTGCTC+CGG | + | Chr3:98656584-98656603 | MsG0380017622.01.T01:intron | 60.0% |
| !! | CATACCTTTGGGGCCGAGAC+TGG | - | Chr3:98655471-98655490 | None:intergenic | 60.0% |
| CGATCCCGCTAGGCCGGAAA+TGG | + | Chr3:98655904-98655923 | MsG0380017622.01.T01:CDS | 65.0% | |
| GGAACGGGCGGCGATGATGT+TGG | - | Chr3:98655429-98655448 | None:intergenic | 65.0% | |
| GGTGCGAACGGCGTTAGCGA+CGG | - | Chr3:98655450-98655469 | None:intergenic | 65.0% | |
| TCCCGCTAGGCCGGAAATGG+TGG | + | Chr3:98655907-98655926 | MsG0380017622.01.T01:CDS | 65.0% | |
| ! | GAGGATGGTAGCGCCGTCGT+TGG | - | Chr3:98655534-98655553 | None:intergenic | 65.0% |
| CGCACCAGTCTCGGCCCCAA+AGG | + | Chr3:98655464-98655483 | MsG0380017622.01.T01:CDS | 70.0% | |
| GGAGGATCGGTGAGGGGCTG+CGG | - | Chr3:98655357-98655376 | None:intergenic | 70.0% | |
| GGCGTTAGCGACGGAACGGG+CGG | - | Chr3:98655441-98655460 | None:intergenic | 70.0% | |
| GGGGCCGAGACTGGTGCGAA+CGG | - | Chr3:98655462-98655481 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 98655344 | 98656941 | 98655344 | ID=MsG0380017622.01;Name=MsG0380017622.01 |
| Chr3 | mRNA | 98655344 | 98656941 | 98655344 | ID=MsG0380017622.01.T01;Parent=MsG0380017622.01;Name=MsG0380017622.01.T01;_AED=0.46;_eAED=0.46;_QI=0|0|0|1|1|1|2|0|512 |
| Chr3 | exon | 98655344 | 98656532 | 98655344 | ID=MsG0380017622.01.T01:exon:2546;Parent=MsG0380017622.01.T01 |
| Chr3 | exon | 98656592 | 98656941 | 98656592 | ID=MsG0380017622.01.T01:exon:2547;Parent=MsG0380017622.01.T01 |
| Chr3 | CDS | 98655344 | 98656532 | 98655344 | ID=MsG0380017622.01.T01:cds;Parent=MsG0380017622.01.T01 |
| Chr3 | CDS | 98656592 | 98656941 | 98656592 | ID=MsG0380017622.01.T01:cds;Parent=MsG0380017622.01.T01 |
| Gene Sequence |
| Protein sequence |
