AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380017755.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017755.01.T01 MTR_3g111620 94.170 223 13 0 1 223 28 250 6.02e-153 424
MsG0380017755.01.T01 MTR_1g021945 78.125 224 47 2 1 223 27 249 2.34e-124 352
MsG0380017755.01.T01 MTR_8g036215 57.534 219 90 2 1 218 21 237 5.01e-88 259
MsG0380017755.01.T01 MTR_8g107140 56.944 216 88 3 6 219 33 245 1.81e-87 259
MsG0380017755.01.T01 MTR_6g079580 54.091 220 96 3 2 219 24 240 2.26e-84 251
MsG0380017755.01.T01 MTR_4g073720 57.078 219 86 5 2 218 27 239 5.33e-83 251
MsG0380017755.01.T01 MTR_8g037890 55.111 225 95 5 2 222 28 250 1.84e-80 243
MsG0380017755.01.T01 MTR_8g075510 57.143 224 84 7 2 222 33 247 3.69e-79 238
MsG0380017755.01.T01 MTR_5g022350 55.804 224 88 5 2 223 33 247 3.71e-79 240
MsG0380017755.01.T01 MTR_8g075550 55.022 229 94 5 2 222 30 257 7.84e-79 239
MsG0380017755.01.T01 MTR_8g075510 57.273 220 82 7 2 218 33 243 1.91e-77 235
MsG0380017755.01.T01 MTR_3g114030 54.464 224 96 6 2 220 9 231 7.29e-76 229
MsG0380017755.01.T01 MTR_8g056820 52.655 226 101 5 2 223 28 251 2.23e-75 228
MsG0380017755.01.T01 MTR_1g025420 53.947 228 97 7 2 222 25 251 5.87e-75 229
MsG0380017755.01.T01 MTR_1g025420 54.054 222 96 6 2 218 25 245 9.00e-75 227
MsG0380017755.01.T01 MTR_5g022310 53.275 229 99 5 2 223 28 255 2.25e-74 226
MsG0380017755.01.T01 MTR_1g062590 54.091 220 96 5 3 219 25 242 2.81e-74 225
MsG0380017755.01.T01 MTR_5g022310 53.275 229 99 5 2 223 28 255 3.98e-74 226
MsG0380017755.01.T01 MTR_7g102380 53.394 221 98 5 2 219 23 241 1.01e-73 224
MsG0380017755.01.T01 MTR_5g059200 51.376 218 98 3 1 218 30 239 3.97e-73 223
MsG0380017755.01.T01 MTR_1g062660 52.489 221 100 5 3 220 25 243 4.46e-73 222
MsG0380017755.01.T01 MTR_7g062610 48.402 219 111 2 2 219 25 242 1.31e-72 221
MsG0380017755.01.T01 MTR_1g062350 52.703 222 100 5 3 221 25 244 1.39e-72 221
MsG0380017755.01.T01 MTR_3g068015 48.636 220 110 3 2 219 30 248 2.43e-72 220
MsG0380017755.01.T01 MTR_1g062340 52.703 222 100 5 3 221 25 244 2.64e-72 220
MsG0380017755.01.T01 MTR_1g062370 51.351 222 103 5 3 221 25 244 6.15e-71 216
MsG0380017755.01.T01 MTR_4g073730 52.915 223 99 5 2 219 27 248 1.30e-70 217
MsG0380017755.01.T01 MTR_4g073730 52.915 223 99 5 2 219 27 248 3.01e-70 218
MsG0380017755.01.T01 MTR_1g062630 52.489 221 100 5 3 220 25 243 5.53e-70 215
MsG0380017755.01.T01 MTR_2g069660 52.036 221 102 4 2 219 24 243 4.96e-69 212
MsG0380017755.01.T01 MTR_2g067980 50.439 228 105 6 2 223 26 251 5.17e-69 228
MsG0380017755.01.T01 MTR_2g068030 49.327 223 103 7 2 218 25 243 5.88e-69 212
MsG0380017755.01.T01 MTR_6g009480 45.946 222 116 3 2 219 31 252 3.04e-68 211
MsG0380017755.01.T01 MTR_2g068655 45.291 223 116 6 1 219 32 252 8.74e-60 190
MsG0380017755.01.T01 MTR_1g062690 46.606 221 91 4 3 221 25 220 4.43e-59 186
MsG0380017755.01.T01 MTR_4g063630 41.256 223 125 5 1 218 30 251 1.18e-54 175
MsG0380017755.01.T01 MTR_5g010635 44.292 219 102 7 2 219 26 225 6.12e-52 168
MsG0380017755.01.T01 MTR_5g010640 42.035 226 106 8 2 219 28 236 9.09e-49 160
MsG0380017755.01.T01 MTR_8g096900 41.818 220 105 8 2 219 50 248 9.67e-46 152
MsG0380017755.01.T01 MTR_8g089020 47.205 161 63 3 54 214 21 159 5.70e-45 147
MsG0380017755.01.T01 MTR_2g067990 42.478 226 94 10 2 221 29 224 5.50e-43 154
MsG0380017755.01.T01 MTR_2g067970 43.386 189 96 8 41 222 1 185 3.29e-39 144
MsG0380017755.01.T01 MTR_5g023850 36.522 230 101 9 2 223 28 220 3.27e-38 132
MsG0380017755.01.T01 MTR_5g022350 54.615 130 52 4 2 129 98 222 3.58e-38 132
MsG0380017755.01.T01 MTR_2g063150 33.333 207 133 4 11 215 45 248 1.67e-37 131
MsG0380017755.01.T01 MTR_8g096910 45.378 119 56 3 2 119 24 134 3.44e-27 102
MsG0380017755.01.T01 MTR_7g076360 33.796 216 77 5 2 215 10 161 3.60e-27 102
MsG0380017755.01.T01 MTR_1g062390 32.174 230 135 6 2 223 26 242 2.64e-26 102
MsG0380017755.01.T01 MTR_8g096920 46.667 120 53 4 2 119 21 131 2.63e-25 97.8
MsG0380017755.01.T01 MTR_3g081550 44.792 96 50 3 82 175 15 109 6.15e-13 63.5
MsG0380017755.01.T01 MTR_5g068670 42.683 82 43 3 37 117 12 90 6.12e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017755.01.T01 AT1G75030 67.713 223 70 2 1 222 25 246 4.65e-109 313
MsG0380017755.01.T01 AT1G75050 68.778 221 66 3 1 220 26 244 5.05e-108 311
MsG0380017755.01.T01 AT1G75040 64.220 218 74 4 2 219 26 239 6.34e-100 290
MsG0380017755.01.T01 AT1G19320 63.348 221 75 4 2 218 28 246 3.92e-92 271
MsG0380017755.01.T01 AT1G73620 57.407 216 87 3 6 219 48 260 1.70e-87 259
MsG0380017755.01.T01 AT1G18250 56.481 216 89 3 6 219 28 240 1.85e-86 256
MsG0380017755.01.T01 AT1G18250 56.481 216 89 3 6 219 27 239 2.31e-86 256
MsG0380017755.01.T01 AT4G38660 57.143 224 88 5 2 223 32 249 9.36e-84 253
MsG0380017755.01.T01 AT4G38660 57.143 224 88 5 2 223 10 227 1.65e-83 251
MsG0380017755.01.T01 AT4G24180 57.269 227 85 6 2 220 30 252 4.60e-82 245
MsG0380017755.01.T01 AT4G24180 57.269 227 85 6 2 220 35 257 4.69e-82 245
MsG0380017755.01.T01 AT4G24180 56.957 230 87 6 2 223 30 255 6.20e-82 247
MsG0380017755.01.T01 AT4G24180 56.957 230 87 6 2 223 35 260 7.81e-82 247
MsG0380017755.01.T01 AT1G77700 53.211 218 94 3 1 218 62 271 3.62e-80 243
MsG0380017755.01.T01 AT1G77700 53.211 218 94 3 1 218 62 271 5.87e-80 242
MsG0380017755.01.T01 AT1G77700 53.211 218 94 3 1 218 90 299 1.11e-79 243
MsG0380017755.01.T01 AT5G24620 55.111 225 94 3 2 219 27 251 5.75e-79 243
MsG0380017755.01.T01 AT5G24620 55.111 225 94 3 2 219 82 306 1.31e-78 244
MsG0380017755.01.T01 AT5G24620 55.111 225 94 3 2 219 103 327 1.73e-78 244
MsG0380017755.01.T01 AT1G75800 54.148 229 97 6 2 223 25 252 8.92e-76 232
MsG0380017755.01.T01 AT4G36010 54.386 228 94 5 2 220 25 251 1.18e-75 231
MsG0380017755.01.T01 AT4G36010 54.386 228 94 5 2 220 25 251 1.18e-75 231
MsG0380017755.01.T01 AT2G17860 55.459 229 93 6 2 222 25 252 1.18e-75 229
MsG0380017755.01.T01 AT4G24180 56.398 211 80 6 2 204 35 241 2.97e-73 225
MsG0380017755.01.T01 AT4G24180 56.398 211 80 6 2 204 30 236 4.60e-73 224
MsG0380017755.01.T01 AT1G20030 53.097 226 98 6 2 220 5 229 4.73e-73 224
MsG0380017755.01.T01 AT1G20030 53.097 226 98 6 2 220 22 246 6.92e-73 224
MsG0380017755.01.T01 AT5G40020 46.364 220 117 1 2 220 30 249 9.29e-71 216
MsG0380017755.01.T01 AT4G38670 51.786 224 101 7 2 219 25 247 5.59e-69 213
MsG0380017755.01.T01 AT4G38670 51.786 224 101 7 2 219 25 247 5.59e-69 213
MsG0380017755.01.T01 AT4G38670 51.786 224 101 7 2 219 9 231 9.13e-69 212
MsG0380017755.01.T01 AT5G02140 47.085 223 115 3 2 222 23 244 1.06e-65 205
MsG0380017755.01.T01 AT5G02140 47.273 220 113 3 2 219 23 241 1.66e-65 203
MsG0380017755.01.T01 AT5G38280 48.444 225 108 7 2 219 27 250 3.46e-61 202
MsG0380017755.01.T01 AT5G38280 48.444 225 108 7 2 219 27 250 4.43e-61 202
MsG0380017755.01.T01 AT2G28790 44.395 223 117 6 1 218 28 248 2.93e-57 182
MsG0380017755.01.T01 AT2G28790 44.395 223 117 6 1 218 53 273 3.10e-57 182
MsG0380017755.01.T01 AT4G11650 43.439 221 104 7 2 221 25 225 5.99e-53 171
MsG0380017755.01.T01 AT4G36000 56.667 150 56 4 75 223 1 142 2.93e-51 165
MsG0380017755.01.T01 AT4G36000 56.667 150 56 4 75 223 1 142 2.93e-51 165
MsG0380017755.01.T01 AT4G18253 40.359 223 122 5 1 220 25 239 5.32e-51 166
MsG0380017755.01.T01 AT1G70250 41.558 231 120 7 2 223 147 371 6.38e-47 165
MsG0380017755.01.T01 AT4G18250 41.071 224 122 7 1 221 58 274 2.92e-45 160
MsG0380017755.01.T01 AT5G24620 53.333 120 50 2 106 219 15 134 1.66e-34 125
MsG0380017755.01.T01 AT2G24810 58.974 78 31 1 141 218 116 192 1.17e-24 96.7

Find 77 sgRNAs with CRISPR-Local

Find 81 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGGCTGGTCTGGACGTTTC+TGG 0.041189 3:+100343129 MsG0380017755.01.T01:CDS
ATCTGGCCGGGAACACTTTC+CGG 0.214212 3:+100343032 MsG0380017755.01.T01:CDS
CGCCGCACACGCACTCTTAC+AGG 0.259177 3:-100343456 None:intergenic
TCAAGCACTTGCACATGTTC+TGG 0.269659 3:+100343605 MsG0380017755.01.T01:CDS
GCTGCTCCAGCAGGCTGGTC+TGG 0.341717 3:+100343119 MsG0380017755.01.T01:CDS
AGGCTGGTCTGGACGTTTCT+GGG 0.353237 3:+100343130 MsG0380017755.01.T01:CDS
TCATTGTCCAGCGGAGTTGC+AGG 0.378054 3:+100343406 MsG0380017755.01.T01:CDS
AGACTTCTATGACGTGAGTT+TGG 0.392352 3:+100343295 MsG0380017755.01.T01:CDS
AAGTAGTTCAGCACCGTTGC+CGG 0.396672 3:-100343051 None:intergenic
CCGTTGCCGGAAAGTGTTCC+CGG 0.398738 3:-100343038 None:intergenic
ACTTTGACGGTGCTGGTAAC+GGG 0.402595 3:+100343168 MsG0380017755.01.T01:CDS
TTTACGATCGGAAGCGGGAA+TGG 0.433505 3:+100343266 MsG0380017755.01.T01:CDS
GTAAACTCCGCCAACGTCAC+TGG 0.437210 3:-100343248 None:intergenic
GATGGTTACAATGTGGGGAT+AGG 0.440861 3:+100343320 MsG0380017755.01.T01:CDS
CTGACAATCACCTGTTCCTC+TGG 0.440961 3:-100343354 None:intergenic
ACCGTTGCATTTCAATCCTC+CGG 0.443760 3:-100343213 None:intergenic
ATACAAGCAACCAGAGGAAC+AGG 0.461854 3:+100343344 MsG0380017755.01.T01:CDS
TTTGAATTCGCTGCTCCAGC+AGG 0.462645 3:+100343110 MsG0380017755.01.T01:CDS
ACCGTTGTAACAACACAATC+TGG 0.462686 3:+100343015 MsG0380017755.01.T01:CDS
GGCTGCAACTTTGACGGTGC+TGG 0.471846 3:+100343161 MsG0380017755.01.T01:CDS
AACTTTGACGGTGCTGGTAA+CGG 0.472118 3:+100343167 MsG0380017755.01.T01:CDS
GTGCTGAACTACTTGGTGAC+GGG 0.474840 3:+100343060 MsG0380017755.01.T01:CDS
GAGTTGCAGGTAACAGAGGA+AGG 0.484221 3:+100343419 MsG0380017755.01.T01:CDS
AAACGTCCAGACCAGCCTGC+TGG 0.486502 3:-100343125 None:intergenic
ATGGTTACAATGTGGGGATA+GGG 0.488169 3:+100343321 MsG0380017755.01.T01:CDS
GGACGTTTCTGGGGTAGAAC+CGG 0.500730 3:+100343140 MsG0380017755.01.T01:CDS
TCTGTTACCTGCAACTCCGC+TGG 0.503530 3:-100343413 None:intergenic
TTGGTGGATGGTTACAATGT+GGG 0.504388 3:+100343314 MsG0380017755.01.T01:CDS
TGCTCCTCCAGTGACGTTGG+CGG 0.507952 3:+100343241 MsG0380017755.01.T01:CDS
CCGGGAACACTTTCCGGCAA+CGG 0.521195 3:+100343038 MsG0380017755.01.T01:CDS
AATTCGCTGCTCCAGCAGGC+TGG 0.523757 3:+100343114 MsG0380017755.01.T01:CDS
TTGTAACAACACAATCTGGC+CGG 0.526132 3:+100343019 MsG0380017755.01.T01:CDS
GCGGAGTTTACGATCGGAAG+CGG 0.539163 3:+100343260 MsG0380017755.01.T01:CDS
GGCAACGGTGCTGAACTACT+TGG 0.539389 3:+100343053 MsG0380017755.01.T01:CDS
CGGAGTTTACGATCGGAAGC+GGG 0.541171 3:+100343261 MsG0380017755.01.T01:CDS
AGAACCGGCTGCAACTTTGA+CGG 0.552013 3:+100343155 MsG0380017755.01.T01:CDS
GCCAGATTGTGTTGTTACAA+CGG 0.555322 3:-100343016 None:intergenic
GCGAATTCAAAAGATGATCC+TGG 0.556744 3:-100343098 None:intergenic
ACAGGTGATTGTCAGTATGC+AGG 0.556822 3:+100343362 MsG0380017755.01.T01:CDS
TGTAACAACACAATCTGGCC+GGG 0.563673 3:+100343020 MsG0380017755.01.T01:CDS
AACATCTCTGAGTACTGTGT+TGG 0.565049 3:-100343536 None:intergenic
CTTCTATGACGTGAGTTTGG+TGG 0.567400 3:+100343298 MsG0380017755.01.T01:CDS
GGATTGAAATGCAACGGTGG+AGG 0.575754 3:+100343218 MsG0380017755.01.T01:CDS
TGGTGGATGGTTACAATGTG+GGG 0.575782 3:+100343315 MsG0380017755.01.T01:CDS
CTGTGGACTCGAATGTTCAC+CGG 0.577729 3:-100343504 None:intergenic
GGTAACGGGAATTGCATCAC+AGG 0.579922 3:+100343182 MsG0380017755.01.T01:CDS
GTTGCAGGTAACAGAGGAAG+GGG 0.591850 3:+100343421 MsG0380017755.01.T01:CDS
TTGAATGTGGTATGGCTAGG+AGG 0.593673 3:-100343663 None:intergenic
GGTGCTGAACTACTTGGTGA+CGG 0.595292 3:+100343059 MsG0380017755.01.T01:CDS
TATGGCTAGGAGGAAGCAGT+TGG 0.600723 3:-100343653 None:intergenic
GGTTGTGTTGCGGATTTGAA+CGG 0.603815 3:+100343383 MsG0380017755.01.T01:CDS
ACCGGTGCAACAAAACTCCT+CGG 0.606971 3:-100343486 None:intergenic
AGCGGAGTTGCAGGTAACAG+AGG 0.608898 3:+100343415 MsG0380017755.01.T01:CDS
AGCACCGTCAAAGTTGCAGC+CGG 0.610001 3:-100343159 None:intergenic
TGTGTTGGACTGCAACTCTG+TGG 0.610848 3:-100343521 None:intergenic
AGGTGCTCCTCCAGTGACGT+TGG 0.611186 3:+100343238 MsG0380017755.01.T01:CDS
TGCTGAACTACTTGGTGACG+GGG 0.611875 3:+100343061 MsG0380017755.01.T01:CDS
ACCGGAGGATTGAAATGCAA+CGG 0.612318 3:+100343212 MsG0380017755.01.T01:CDS
TATGACGTGAGTTTGGTGGA+TGG 0.616012 3:+100343302 MsG0380017755.01.T01:CDS
GGCTGGTCTGGACGTTTCTG+GGG 0.623771 3:+100343131 MsG0380017755.01.T01:CDS
TTTGGTGGATGGTTACAATG+TGG 0.629478 3:+100343313 MsG0380017755.01.T01:CDS
ACGTTGGCGGAGTTTACGAT+CGG 0.633255 3:+100343254 MsG0380017755.01.T01:CDS
TAAGCATAACTGTATGCAGA+GGG 0.634541 3:-100343572 None:intergenic
TGCATCACAGGAGACTGCAC+CGG 0.636449 3:+100343194 MsG0380017755.01.T01:CDS
TGCCTGTAAGAGTGCGTGTG+CGG 0.637848 3:+100343454 MsG0380017755.01.T01:CDS
ATCACAGGAGACTGCACCGG+AGG 0.642936 3:+100343197 MsG0380017755.01.T01:CDS
AGTTGCAGGTAACAGAGGAA+GGG 0.644950 3:+100343420 MsG0380017755.01.T01:CDS
AACTCCGCCAACGTCACTGG+AGG 0.649133 3:-100343245 None:intergenic
TCAGTATGCAGGTTGTGTTG+CGG 0.671374 3:+100343373 MsG0380017755.01.T01:CDS
GCTGAACTACTTGGTGACGG+GGG 0.674143 3:+100343062 MsG0380017755.01.T01:CDS
TTTGAACGGTCATTGTCCAG+CGG 0.681723 3:+100343397 MsG0380017755.01.T01:CDS
GTGTGCGGCGTTTAATACCG+AGG 0.685026 3:+100343469 MsG0380017755.01.T01:CDS
TTGCAGGTAACAGAGGAAGG+GGG 0.708103 3:+100343422 MsG0380017755.01.T01:CDS
ATAAGCATAACTGTATGCAG+AGG 0.711516 3:-100343573 None:intergenic
GGAGGATTGAAATGCAACGG+TGG 0.716120 3:+100343215 MsG0380017755.01.T01:CDS
ATAGGGATACAAGCAACCAG+AGG 0.737024 3:+100343338 MsG0380017755.01.T01:CDS
AATTCAAAAGATGATCCTGG+CGG 0.749749 3:-100343095 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! ACAAAAAGTGATGAGATAAT+CGG - Chr3:100343633-100343652 None:intergenic 25.0%
AATTCAAAAGATGATCCTGG+CGG - Chr3:100343098-100343117 None:intergenic 35.0%
ATAAGCATAACTGTATGCAG+AGG - Chr3:100343576-100343595 None:intergenic 35.0%
TAAGCATAACTGTATGCAGA+GGG - Chr3:100343575-100343594 None:intergenic 35.0%
! GTTGTTACAACGGTTTTCTA+TGG - Chr3:100343009-100343028 None:intergenic 35.0%
ACCGTTGTAACAACACAATC+TGG + Chr3:100343015-100343034 MsG0380017755.01.T01:CDS 40.0%
AGACTTCTATGACGTGAGTT+TGG + Chr3:100343295-100343314 MsG0380017755.01.T01:CDS 40.0%
ATGGTTACAATGTGGGGATA+GGG + Chr3:100343321-100343340 MsG0380017755.01.T01:CDS 40.0%
GCGAATTCAAAAGATGATCC+TGG - Chr3:100343101-100343120 None:intergenic 40.0%
TTGTAACAACACAATCTGGC+CGG + Chr3:100343019-100343038 MsG0380017755.01.T01:CDS 40.0%
! AACATCTCTGAGTACTGTGT+TGG - Chr3:100343539-100343558 None:intergenic 40.0%
! GCCAGATTGTGTTGTTACAA+CGG - Chr3:100343019-100343038 None:intergenic 40.0%
! TTGGTGGATGGTTACAATGT+GGG + Chr3:100343314-100343333 MsG0380017755.01.T01:CDS 40.0%
! TTTGGTGGATGGTTACAATG+TGG + Chr3:100343313-100343332 MsG0380017755.01.T01:CDS 40.0%
ACAGGTGATTGTCAGTATGC+AGG + Chr3:100343362-100343381 MsG0380017755.01.T01:CDS 45.0%
ACCGGAGGATTGAAATGCAA+CGG + Chr3:100343212-100343231 MsG0380017755.01.T01:CDS 45.0%
ACCGTTGCATTTCAATCCTC+CGG - Chr3:100343216-100343235 None:intergenic 45.0%
AGTTGCAGGTAACAGAGGAA+GGG + Chr3:100343420-100343439 MsG0380017755.01.T01:CDS 45.0%
ATACAAGCAACCAGAGGAAC+AGG + Chr3:100343344-100343363 MsG0380017755.01.T01:CDS 45.0%
ATAGGGATACAAGCAACCAG+AGG + Chr3:100343338-100343357 MsG0380017755.01.T01:CDS 45.0%
CTTCTATGACGTGAGTTTGG+TGG + Chr3:100343298-100343317 MsG0380017755.01.T01:CDS 45.0%
GATGGTTACAATGTGGGGAT+AGG + Chr3:100343320-100343339 MsG0380017755.01.T01:CDS 45.0%
GGTTGTGTTGCGGATTTGAA+CGG + Chr3:100343383-100343402 MsG0380017755.01.T01:CDS 45.0%
TCAAGCACTTGCACATGTTC+TGG + Chr3:100343605-100343624 MsG0380017755.01.T01:CDS 45.0%
TCAGTATGCAGGTTGTGTTG+CGG + Chr3:100343373-100343392 MsG0380017755.01.T01:CDS 45.0%
TGTAACAACACAATCTGGCC+GGG + Chr3:100343020-100343039 MsG0380017755.01.T01:CDS 45.0%
TTTGAACGGTCATTGTCCAG+CGG + Chr3:100343397-100343416 MsG0380017755.01.T01:CDS 45.0%
! TATGACGTGAGTTTGGTGGA+TGG + Chr3:100343302-100343321 MsG0380017755.01.T01:CDS 45.0%
! TGGTGGATGGTTACAATGTG+GGG + Chr3:100343315-100343334 MsG0380017755.01.T01:CDS 45.0%
!! AACTTTGACGGTGCTGGTAA+CGG + Chr3:100343167-100343186 MsG0380017755.01.T01:CDS 45.0%
AAGTAGTTCAGCACCGTTGC+CGG - Chr3:100343054-100343073 None:intergenic 50.0%
ACCGGTGCAACAAAACTCCT+CGG - Chr3:100343489-100343508 None:intergenic 50.0%
ACGTTGGCGGAGTTTACGAT+CGG + Chr3:100343254-100343273 MsG0380017755.01.T01:CDS 50.0%
AGAACCGGCTGCAACTTTGA+CGG + Chr3:100343155-100343174 MsG0380017755.01.T01:CDS 50.0%
CTGACAATCACCTGTTCCTC+TGG - Chr3:100343357-100343376 None:intergenic 50.0%
CTGTGGACTCGAATGTTCAC+CGG - Chr3:100343507-100343526 None:intergenic 50.0%
GAGTTGCAGGTAACAGAGGA+AGG + Chr3:100343419-100343438 MsG0380017755.01.T01:CDS 50.0%
GGAGGATTGAAATGCAACGG+TGG + Chr3:100343215-100343234 MsG0380017755.01.T01:CDS 50.0%
GGATTGAAATGCAACGGTGG+AGG + Chr3:100343218-100343237 MsG0380017755.01.T01:CDS 50.0%
GTTGCAGGTAACAGAGGAAG+GGG + Chr3:100343421-100343440 MsG0380017755.01.T01:CDS 50.0%
TGTGTTGGACTGCAACTCTG+TGG - Chr3:100343524-100343543 None:intergenic 50.0%
TTGCAGGTAACAGAGGAAGG+GGG + Chr3:100343422-100343441 MsG0380017755.01.T01:CDS 50.0%
TTTACGATCGGAAGCGGGAA+TGG + Chr3:100343266-100343285 MsG0380017755.01.T01:CDS 50.0%
TTTGAATTCGCTGCTCCAGC+AGG + Chr3:100343110-100343129 MsG0380017755.01.T01:CDS 50.0%
! GGTGCTGAACTACTTGGTGA+CGG + Chr3:100343059-100343078 MsG0380017755.01.T01:CDS 50.0%
! GTGCTGAACTACTTGGTGAC+GGG + Chr3:100343060-100343079 MsG0380017755.01.T01:CDS 50.0%
!! ACTTTGACGGTGCTGGTAAC+GGG + Chr3:100343168-100343187 MsG0380017755.01.T01:CDS 50.0%
!! GGTAACGGGAATTGCATCAC+AGG + Chr3:100343182-100343201 MsG0380017755.01.T01:CDS 50.0%
!! TGCTGAACTACTTGGTGACG+GGG + Chr3:100343061-100343080 MsG0380017755.01.T01:CDS 50.0%
!!! ACCGAGGAGTTTTGTTGCAC+CGG + Chr3:100343485-100343504 MsG0380017755.01.T01:CDS 50.0%
AGCACCGTCAAAGTTGCAGC+CGG - Chr3:100343162-100343181 None:intergenic 55.0%
AGCGGAGTTGCAGGTAACAG+AGG + Chr3:100343415-100343434 MsG0380017755.01.T01:CDS 55.0%
ATCTGGCCGGGAACACTTTC+CGG + Chr3:100343032-100343051 MsG0380017755.01.T01:CDS 55.0%
CGGAGTTTACGATCGGAAGC+GGG + Chr3:100343261-100343280 MsG0380017755.01.T01:CDS 55.0%
GCGGAGTTTACGATCGGAAG+CGG + Chr3:100343260-100343279 MsG0380017755.01.T01:CDS 55.0%
GGTAACAGAGGAAGGGGGTT+CGG + Chr3:100343427-100343446 MsG0380017755.01.T01:CDS 55.0%
GTAAACTCCGCCAACGTCAC+TGG - Chr3:100343251-100343270 None:intergenic 55.0%
GTGTGCGGCGTTTAATACCG+AGG + Chr3:100343469-100343488 MsG0380017755.01.T01:CDS 55.0%
TCATTGTCCAGCGGAGTTGC+AGG + Chr3:100343406-100343425 MsG0380017755.01.T01:CDS 55.0%
TCTGTTACCTGCAACTCCGC+TGG - Chr3:100343416-100343435 None:intergenic 55.0%
TGCATCACAGGAGACTGCAC+CGG + Chr3:100343194-100343213 MsG0380017755.01.T01:CDS 55.0%
! GGCAACGGTGCTGAACTACT+TGG + Chr3:100343053-100343072 MsG0380017755.01.T01:CDS 55.0%
! TGCCTGTAAGAGTGCGTGTG+CGG + Chr3:100343454-100343473 MsG0380017755.01.T01:CDS 55.0%
!! AGGCTGGTCTGGACGTTTCT+GGG + Chr3:100343130-100343149 MsG0380017755.01.T01:CDS 55.0%
!! GCTGAACTACTTGGTGACGG+GGG + Chr3:100343062-100343081 MsG0380017755.01.T01:CDS 55.0%
!! GGACGTTTCTGGGGTAGAAC+CGG + Chr3:100343140-100343159 MsG0380017755.01.T01:CDS 55.0%
AAACGTCCAGACCAGCCTGC+TGG - Chr3:100343128-100343147 None:intergenic 60.0%
AACAGAGGAAGGGGGTTCGG+TGG + Chr3:100343430-100343449 MsG0380017755.01.T01:CDS 60.0%
AACTCCGCCAACGTCACTGG+AGG - Chr3:100343248-100343267 None:intergenic 60.0%
AATTCGCTGCTCCAGCAGGC+TGG + Chr3:100343114-100343133 MsG0380017755.01.T01:CDS 60.0%
AGGTGCTCCTCCAGTGACGT+TGG + Chr3:100343238-100343257 MsG0380017755.01.T01:CDS 60.0%
ATCACAGGAGACTGCACCGG+AGG + Chr3:100343197-100343216 MsG0380017755.01.T01:CDS 60.0%
CCGGGAACACTTTCCGGCAA+CGG + Chr3:100343038-100343057 MsG0380017755.01.T01:CDS 60.0%
GGCTGCAACTTTGACGGTGC+TGG + Chr3:100343161-100343180 MsG0380017755.01.T01:CDS 60.0%
TGCTCCTCCAGTGACGTTGG+CGG + Chr3:100343241-100343260 MsG0380017755.01.T01:CDS 60.0%
!! CAGGCTGGTCTGGACGTTTC+TGG + Chr3:100343129-100343148 MsG0380017755.01.T01:CDS 60.0%
!! CCGTTGCCGGAAAGTGTTCC+CGG - Chr3:100343041-100343060 None:intergenic 60.0%
!! GGCTGGTCTGGACGTTTCTG+GGG + Chr3:100343131-100343150 MsG0380017755.01.T01:CDS 60.0%
CGCCGCACACGCACTCTTAC+AGG - Chr3:100343459-100343478 None:intergenic 65.0%
! GGGGGATTTTCTCTGCCGCC+AGG + Chr3:100343080-100343099 MsG0380017755.01.T01:CDS 65.0%
! GCTGCTCCAGCAGGCTGGTC+TGG + Chr3:100343119-100343138 MsG0380017755.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr3 gene 100342999 100343670 100342999 ID=MsG0380017755.01;Name=MsG0380017755.01
Chr3 mRNA 100342999 100343670 100342999 ID=MsG0380017755.01.T01;Parent=MsG0380017755.01;Name=MsG0380017755.01.T01;_AED=0.34;_eAED=0.34;_QI=0|-1|0|1|-1|1|1|0|223
Chr3 exon 100342999 100343670 100342999 ID=MsG0380017755.01.T01:exon:35759;Parent=MsG0380017755.01.T01
Chr3 CDS 100342999 100343670 100342999 ID=MsG0380017755.01.T01:cds;Parent=MsG0380017755.01.T01
Gene Sequence

>MsG0380017755.01.T01

ATGTTTACCATAGAAAACCGTTGTAACAACACAATCTGGCCGGGAACACTTTCCGGCAACGGTGCTGAACTACTTGGTGACGGGGGATTTTCTCTGCCGCCAGGATCATCTTTTGAATTCGCTGCTCCAGCAGGCTGGTCTGGACGTTTCTGGGGTAGAACCGGCTGCAACTTTGACGGTGCTGGTAACGGGAATTGCATCACAGGAGACTGCACCGGAGGATTGAAATGCAACGGTGGAGGTGCTCCTCCAGTGACGTTGGCGGAGTTTACGATCGGAAGCGGGAATGGAGATAAAGACTTCTATGACGTGAGTTTGGTGGATGGTTACAATGTGGGGATAGGGATACAAGCAACCAGAGGAACAGGTGATTGTCAGTATGCAGGTTGTGTTGCGGATTTGAACGGTCATTGTCCAGCGGAGTTGCAGGTAACAGAGGAAGGGGGTTCGGTGGTTGCCTGTAAGAGTGCGTGTGCGGCGTTTAATACCGAGGAGTTTTGTTGCACCGGTGAACATTCGAGTCCACAGAGTTGCAGTCCAACACAGTACTCAGAGATGTTCAAGACTGTGTGTCCCTCTGCATACAGTTATGCTTATGATGATGCTTCAAGCACTTGCACATGTTCTGGATCCGATTATCTCATCACTTTTTGTCCAACTGCTTCCTCCTAG
Protein sequence

>MsG0380017755.01.T01

MFTIENRCNNTIWPGTLSGNGAELLGDGGFSLPPGSSFEFAAPAGWSGRFWGRTGCNFDGAGNGNCITGDCTGGLKCNGGGAPPVTLAEFTIGSGNGDKDFYDVSLVDGYNVGIGIQATRGTGDCQYAGCVADLNGHCPAELQVTEEGGSVVACKSACAAFNTEEFCCTGEHSSPQSCSPTQYSEMFKTVCPSAYSYAYDDASSTCTCSGSDYLITFCPTASS*