AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580024408.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024408.01.T01 MTR_5g010640 85.345 232 3 1 1 201 5 236 1.00e-138 387
MsG0580024408.01.T01 MTR_8g096900 52.018 223 85 4 1 201 26 248 2.64e-75 227
MsG0580024408.01.T01 MTR_5g010635 52.195 205 76 1 19 201 21 225 5.95e-73 221
MsG0580024408.01.T01 MTR_8g096910 43.939 198 80 4 5 201 9 176 9.60e-52 164
MsG0580024408.01.T01 MTR_8g096920 45.989 187 74 3 16 201 13 173 1.94e-49 159
MsG0580024408.01.T01 MTR_1g025420 37.705 244 104 7 4 200 3 245 2.13e-40 138
MsG0580024408.01.T01 MTR_5g059200 38.235 238 104 8 1 200 7 239 2.22e-40 139
MsG0580024408.01.T01 MTR_1g025420 37.705 244 104 7 4 200 3 245 3.27e-40 139
MsG0580024408.01.T01 MTR_3g114030 37.931 232 96 7 16 201 1 230 5.51e-39 134
MsG0580024408.01.T01 MTR_8g037890 35.656 244 111 7 2 201 6 247 6.03e-39 136
MsG0580024408.01.T01 MTR_8g107140 38.559 236 98 8 9 201 14 245 1.56e-38 133
MsG0580024408.01.T01 MTR_8g056820 35.772 246 108 9 2 201 6 247 2.50e-38 133
MsG0580024408.01.T01 MTR_8g036215 36.364 242 105 8 1 200 3 237 4.35e-38 132
MsG0580024408.01.T01 MTR_8g075510 36.364 231 109 7 7 201 16 244 8.80e-38 131
MsG0580024408.01.T01 MTR_8g075550 38.723 235 93 8 15 200 21 253 1.04e-37 132
MsG0580024408.01.T01 MTR_5g022310 35.510 245 108 8 5 201 9 251 1.63e-37 130
MsG0580024408.01.T01 MTR_5g022310 35.510 245 108 8 5 201 9 251 3.03e-37 131
MsG0580024408.01.T01 MTR_8g075510 36.325 234 103 8 7 200 16 243 2.28e-36 129
MsG0580024408.01.T01 MTR_7g062610 33.471 242 117 8 2 201 3 242 3.71e-36 127
MsG0580024408.01.T01 MTR_5g022350 36.052 233 109 10 5 201 15 243 7.17e-36 128
MsG0580024408.01.T01 MTR_1g021945 38.222 225 95 7 19 201 23 245 8.97e-36 126
MsG0580024408.01.T01 MTR_4g073730 35.950 242 106 9 7 201 9 248 1.28e-35 127
MsG0580024408.01.T01 MTR_3g068015 34.800 250 112 12 1 201 1 248 1.39e-35 125
MsG0580024408.01.T01 MTR_6g079580 35.366 246 107 10 1 201 2 240 1.69e-35 125
MsG0580024408.01.T01 MTR_4g073730 35.950 242 106 9 7 201 9 248 2.03e-35 127
MsG0580024408.01.T01 MTR_3g111620 35.556 225 101 6 19 201 24 246 2.44e-35 125
MsG0580024408.01.T01 MTR_2g069660 34.426 244 116 7 1 201 1 243 6.32e-35 124
MsG0580024408.01.T01 MTR_4g073720 35.865 237 111 9 2 200 6 239 5.83e-34 124
MsG0580024408.01.T01 MTR_2g067980 38.655 238 94 11 11 201 15 247 8.87e-33 124
MsG0580024408.01.T01 MTR_2g068655 34.802 227 102 8 19 201 28 252 8.00e-32 117
MsG0580024408.01.T01 MTR_1g062630 33.784 222 102 7 23 201 23 242 9.09e-32 116
MsG0580024408.01.T01 MTR_1g062590 33.607 244 107 8 11 201 1 242 1.35e-30 112
MsG0580024408.01.T01 MTR_2g067990 39.303 201 98 9 21 201 26 222 2.48e-30 117
MsG0580024408.01.T01 MTR_7g102380 31.148 244 122 9 1 201 1 241 1.15e-29 110
MsG0580024408.01.T01 MTR_1g062350 34.685 222 100 8 23 201 23 242 5.50e-29 108
MsG0580024408.01.T01 MTR_2g068030 37.391 230 96 10 16 200 17 243 5.65e-29 108
MsG0580024408.01.T01 MTR_1g062340 34.234 222 101 8 23 201 23 242 5.86e-29 108
MsG0580024408.01.T01 MTR_1g062370 34.234 222 101 8 23 201 23 242 2.12e-28 107
MsG0580024408.01.T01 MTR_4g063630 30.085 236 119 7 10 200 17 251 5.18e-28 106
MsG0580024408.01.T01 MTR_6g009480 33.198 247 115 11 3 201 8 252 5.24e-28 106
MsG0580024408.01.T01 MTR_1g062660 32.645 242 117 9 4 201 3 242 6.12e-28 105
MsG0580024408.01.T01 MTR_5g023850 33.953 215 119 9 3 201 9 216 3.01e-22 90.5
MsG0580024408.01.T01 MTR_5g022350 38.971 136 73 6 5 133 80 212 3.27e-21 87.8
MsG0580024408.01.T01 MTR_1g062690 31.222 221 85 8 23 201 23 218 7.52e-20 84.0
MsG0580024408.01.T01 MTR_7g076360 33.520 179 90 7 17 191 3 156 3.47e-18 78.6
MsG0580024408.01.T01 MTR_1g062390 26.496 234 133 8 5 201 7 238 4.58e-18 79.7
MsG0580024408.01.T01 MTR_2g067970 35.359 181 75 9 60 201 5 182 5.84e-18 81.6
MsG0580024408.01.T01 MTR_8g089020 37.692 130 46 4 96 193 31 157 2.08e-14 68.2
MsG0580024408.01.T01 MTR_5g068670 46.970 66 33 2 66 130 25 89 7.86e-12 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024408.01.T01 AT4G11650 52.055 219 82 2 5 201 6 223 5.05e-78 234
MsG0580024408.01.T01 AT1G75050 40.664 241 99 7 3 201 5 243 3.09e-44 147
MsG0580024408.01.T01 AT1G75030 39.834 241 101 8 3 201 5 243 1.39e-43 146
MsG0580024408.01.T01 AT1G75040 38.655 238 104 6 3 201 5 239 5.85e-43 144
MsG0580024408.01.T01 AT4G38670 36.290 248 110 8 1 201 1 247 7.16e-42 142
MsG0580024408.01.T01 AT4G38670 36.290 248 110 8 1 201 1 247 7.16e-42 142
MsG0580024408.01.T01 AT1G75800 37.449 243 102 7 7 201 8 248 3.75e-41 142
MsG0580024408.01.T01 AT2G17860 39.271 247 99 9 4 201 5 249 8.78e-41 139
MsG0580024408.01.T01 AT1G77700 37.768 233 103 7 5 200 44 271 1.50e-39 137
MsG0580024408.01.T01 AT1G77700 37.768 233 103 7 5 200 44 271 2.01e-39 137
MsG0580024408.01.T01 AT4G38670 37.500 232 98 7 16 201 1 231 2.26e-39 135
MsG0580024408.01.T01 AT4G36010 39.912 228 85 8 24 201 25 250 3.01e-38 134
MsG0580024408.01.T01 AT4G36010 39.912 228 85 8 24 201 25 250 3.01e-38 134
MsG0580024408.01.T01 AT4G38660 35.565 239 112 8 2 201 10 245 5.39e-38 134
MsG0580024408.01.T01 AT1G77700 38.182 220 94 7 18 200 85 299 6.99e-38 134
MsG0580024408.01.T01 AT5G24620 34.959 246 108 9 5 201 9 251 9.53e-38 135
MsG0580024408.01.T01 AT5G24620 37.885 227 90 8 24 201 82 306 1.81e-37 135
MsG0580024408.01.T01 AT5G24620 37.885 227 90 8 24 201 103 327 1.93e-37 135
MsG0580024408.01.T01 AT4G38660 38.710 217 91 8 24 201 10 223 2.01e-37 132
MsG0580024408.01.T01 AT1G20030 36.444 225 95 6 24 201 22 245 2.33e-37 132
MsG0580024408.01.T01 AT1G20030 36.444 225 95 6 24 201 5 228 2.35e-37 131
MsG0580024408.01.T01 AT1G19320 37.500 240 103 9 5 200 10 246 8.91e-37 129
MsG0580024408.01.T01 AT5G38280 34.711 242 110 8 7 201 10 250 2.63e-35 131
MsG0580024408.01.T01 AT5G38280 34.711 242 110 8 7 201 10 250 3.06e-35 131
MsG0580024408.01.T01 AT1G73620 36.283 226 97 8 19 201 39 260 4.89e-34 122
MsG0580024408.01.T01 AT1G18250 36.574 216 92 7 28 201 28 240 9.35e-34 120
MsG0580024408.01.T01 AT1G18250 36.574 216 92 7 28 201 27 239 1.07e-33 120
MsG0580024408.01.T01 AT5G02140 32.787 244 118 9 1 201 1 241 2.85e-32 117
MsG0580024408.01.T01 AT5G02140 32.787 244 118 9 1 201 1 241 4.97e-32 117
MsG0580024408.01.T01 AT4G24180 31.855 248 105 9 8 201 19 256 9.25e-31 113
MsG0580024408.01.T01 AT4G24180 31.855 248 105 9 8 201 19 256 1.72e-30 114
MsG0580024408.01.T01 AT4G24180 31.452 248 106 9 8 201 14 251 1.94e-30 112
MsG0580024408.01.T01 AT4G24180 31.452 248 106 9 8 201 14 251 4.09e-30 113
MsG0580024408.01.T01 AT5G40020 31.674 221 106 8 24 201 30 248 5.72e-26 100
MsG0580024408.01.T01 AT4G24180 30.172 232 99 8 8 185 19 241 7.79e-25 99.4
MsG0580024408.01.T01 AT4G24180 29.741 232 100 8 8 185 14 236 1.14e-24 99.0
MsG0580024408.01.T01 AT1G70250 29.148 223 111 5 24 201 147 367 1.94e-24 100
MsG0580024408.01.T01 AT2G28790 28.452 239 126 7 6 200 11 248 5.39e-24 95.5
MsG0580024408.01.T01 AT2G28790 28.452 239 126 7 6 200 36 273 5.87e-24 95.9
MsG0580024408.01.T01 AT4G36000 37.857 140 57 4 90 201 1 138 1.10e-21 88.6
MsG0580024408.01.T01 AT4G36000 37.857 140 57 4 90 201 1 138 1.10e-21 88.6
MsG0580024408.01.T01 AT4G18253 28.571 238 120 9 7 201 8 238 1.12e-19 84.0
MsG0580024408.01.T01 AT4G18250 32.243 214 105 7 26 201 61 272 1.81e-19 86.3

Find 56 sgRNAs with CRISPR-Local

Find 64 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTTATTCTAAGTTCTTTA+AGG 0.109038 5:-4450240 MsG0580024408.01.T01:CDS
GTGCTGGTTGCATCATCTTT+AGG 0.231896 5:+4450191 None:intergenic
TGCTGGTTGCATCATCTTTA+GGG 0.281050 5:+4450192 None:intergenic
GTACAAGTAACGCAAGAATC+TGG 0.345424 5:-4450642 MsG0580024408.01.T01:CDS
AATTGTACTGCCGATATTAA+CGG 0.362766 5:-4450397 MsG0580024408.01.T01:CDS
TCCTGCTTGTGCTGCAGCTA+TGG 0.386772 5:+4450774 None:intergenic
AATTGCACTTTCGACAATTC+AGG 0.390196 5:-4450610 MsG0580024408.01.T01:CDS
TGCTGCAGCTATGGATGTTA+TGG 0.396488 5:+4450783 None:intergenic
AAGAACTTAGAATAAGTTGT+TGG 0.409578 5:+4450245 None:intergenic
GCAAATTCCATGATTGTGTT+TGG 0.415246 5:+4450523 None:intergenic
TTAGGGTAACTATAAGCATA+AGG 0.421618 5:+4450209 None:intergenic
ACACTAGAGTGTCAAACAAT+AGG 0.437709 5:-4450553 MsG0580024408.01.T01:CDS
TGAATTGTCGAAAGTGCAAT+TGG 0.451662 5:+4450612 None:intergenic
TTGAGTTTCATGCCACCGCC+GGG 0.462414 5:+4450700 None:intergenic
GCCACCGCCGGGGAAGGCTG+CGG 0.464024 5:+4450711 None:intergenic
GTTGAGTTTCATGCCACCGC+CGG 0.464550 5:+4450699 None:intergenic
GCCGCAGCCTTCCCCGGCGG+TGG 0.465884 5:-4450712 MsG0580024408.01.T01:CDS
ACTTTCGACAATTCAGGTCT+CGG 0.467109 5:-4450604 MsG0580024408.01.T01:CDS
ATTCTAAGTTCTTTAAGGAT+AGG 0.468720 5:-4450235 MsG0580024408.01.T01:CDS
TTTCATGCCACCGCCGGGGA+AGG 0.472855 5:+4450705 None:intergenic
AGGACACTCTCCGTTAATAT+CGG 0.474742 5:+4450387 None:intergenic
ACAAATGCAACTACACCGTA+TGG 0.475606 5:-4450735 MsG0580024408.01.T01:CDS
TCTTGCGTTACTTGTACCAT+TGG 0.482280 5:+4450648 None:intergenic
TACAAGTAACGCAAGAATCT+GGG 0.482336 5:-4450641 MsG0580024408.01.T01:CDS
AACTCAACACAGGTGAATCA+TGG 0.485867 5:-4450684 MsG0580024408.01.T01:CDS
GGGGAAGGCTGCGGCCCATA+CGG 0.488521 5:+4450720 None:intergenic
GCGAAACATCATAGAAATCA+AGG 0.493251 5:+4450482 None:intergenic
TACACCACCAAACACAATCA+TGG 0.514809 5:-4450530 MsG0580024408.01.T01:CDS
TATGATGTTTCGCTTGTACA+AGG 0.516071 5:-4450472 MsG0580024408.01.T01:CDS
AACCAGCACATTCTCTTGTA+CGG 0.516261 5:-4450177 MsG0580024408.01.T01:CDS
GTATGGGCCGCAGCCTTCCC+CGG 0.524947 5:-4450718 MsG0580024408.01.T01:CDS
ACCACACGTGGCAGAGGCAT+TGG 0.525682 5:+4450268 None:intergenic
GGTCTCGGAAAGTGTCAAAC+CGG 0.530011 5:-4450589 MsG0580024408.01.T01:CDS
TAGTGTTCCGTTACAATCAC+CGG 0.530720 5:+4450570 None:intergenic
AATATCGGCAGTACAATTAA+CGG 0.535596 5:+4450402 None:intergenic
ACCAGCACATTCTCTTGTAC+GGG 0.539521 5:-4450176 MsG0580024408.01.T01:CDS
AATTCCATGATTGTGTTTGG+TGG 0.543379 5:+4450526 None:intergenic
TAGGGTAACTATAAGCATAA+GGG 0.543431 5:+4450210 None:intergenic
CTATGAGAAGGAAGATTGAG+AGG 0.547342 5:+4450806 None:intergenic
TCCATAGCTGCAGCACAAGC+AGG 0.551144 5:-4450775 MsG0580024408.01.T01:CDS
TGTTGGACCACACGTGGCAG+AGG 0.556682 5:+4450262 None:intergenic
ACCAATGCCTCTGCCACGTG+TGG 0.578890 5:-4450269 MsG0580024408.01.T01:CDS
AAACCGTCTTTAAATTCCTG+TGG 0.591625 5:-4450427 MsG0580024408.01.T01:CDS
TCCCGTACAAGAGAATGTGC+TGG 0.600307 5:+4450175 None:intergenic
CAAATGCAACTACACCGTAT+GGG 0.615897 5:-4450734 MsG0580024408.01.T01:CDS
TGTCAAACCGGTGATTGTAA+CGG 0.616265 5:-4450577 MsG0580024408.01.T01:CDS
AGTACAATTAACGGTACCAC+AGG 0.617025 5:+4450411 None:intergenic
GTACCACAGGAATTTAAAGA+CGG 0.626605 5:+4450424 None:intergenic
TGGAACATGAACATAACCAA+TGG 0.633971 5:-4450664 MsG0580024408.01.T01:CDS
TGGATGTTATGGCTATGAGA+AGG 0.634571 5:+4450794 None:intergenic
AGCACATTCTCTTGTACGGG+AGG 0.640577 5:-4450173 MsG0580024408.01.T01:CDS
ATAAGTTGTTGGACCACACG+TGG 0.652976 5:+4450256 None:intergenic
ACAAGTAACGCAAGAATCTG+GGG 0.665144 5:-4450640 MsG0580024408.01.T01:CDS
TGAGTTTCATGCCACCGCCG+GGG 0.679603 5:+4450701 None:intergenic
TGGGCCGCAGCCTTCCCCGG+CGG 0.703292 5:-4450715 MsG0580024408.01.T01:CDS
GGTGGCATGAAACTCAACAC+AGG 0.727771 5:-4450694 MsG0580024408.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACTTATTCTAAGTTCTTTA+AGG - Chr5:4450719-4450738 MsG0580024408.01.T01:CDS 20.0%
! AAGAACTTAGAATAAGTTGT+TGG + Chr5:4450717-4450736 None:intergenic 25.0%
!! ATTCTAAGTTCTTTAAGGAT+AGG - Chr5:4450724-4450743 MsG0580024408.01.T01:CDS 25.0%
AATATCGGCAGTACAATTAA+CGG + Chr5:4450560-4450579 None:intergenic 30.0%
AATTGTACTGCCGATATTAA+CGG - Chr5:4450562-4450581 MsG0580024408.01.T01:CDS 30.0%
TAGGGTAACTATAAGCATAA+GGG + Chr5:4450752-4450771 None:intergenic 30.0%
TTAGGGTAACTATAAGCATA+AGG + Chr5:4450753-4450772 None:intergenic 30.0%
!! AAAGACGGTTTTAACAGAAT+TGG + Chr5:4450523-4450542 None:intergenic 30.0%
AAACCGTCTTTAAATTCCTG+TGG - Chr5:4450532-4450551 MsG0580024408.01.T01:CDS 35.0%
AATTCCATGATTGTGTTTGG+TGG + Chr5:4450436-4450455 None:intergenic 35.0%
AATTGCACTTTCGACAATTC+AGG - Chr5:4450349-4450368 MsG0580024408.01.T01:intron 35.0%
GCAAATTCCATGATTGTGTT+TGG + Chr5:4450439-4450458 None:intergenic 35.0%
GCGAAACATCATAGAAATCA+AGG + Chr5:4450480-4450499 None:intergenic 35.0%
GTACCACAGGAATTTAAAGA+CGG + Chr5:4450538-4450557 None:intergenic 35.0%
GTTGTATCAAACGTAGTACA+AGG + Chr5:4450630-4450649 None:intergenic 35.0%
TACAAGTAACGCAAGAATCT+GGG - Chr5:4450318-4450337 MsG0580024408.01.T01:intron 35.0%
TATGATGTTTCGCTTGTACA+AGG - Chr5:4450487-4450506 MsG0580024408.01.T01:CDS 35.0%
TGGAACATGAACATAACCAA+TGG - Chr5:4450295-4450314 MsG0580024408.01.T01:intron 35.0%
! ACACTAGAGTGTCAAACAAT+AGG - Chr5:4450406-4450425 MsG0580024408.01.T01:CDS 35.0%
! TGAATTGTCGAAAGTGCAAT+TGG + Chr5:4450350-4450369 None:intergenic 35.0%
AACCAGCACATTCTCTTGTA+CGG - Chr5:4450782-4450801 MsG0580024408.01.T01:CDS 40.0%
AACTCAACACAGGTGAATCA+TGG - Chr5:4450275-4450294 MsG0580024408.01.T01:CDS 40.0%
ACAAATGCAACTACACCGTA+TGG - Chr5:4450224-4450243 MsG0580024408.01.T01:CDS 40.0%
ACAAGTAACGCAAGAATCTG+GGG - Chr5:4450319-4450338 MsG0580024408.01.T01:intron 40.0%
ACTTTCGACAATTCAGGTCT+CGG - Chr5:4450355-4450374 MsG0580024408.01.T01:intron 40.0%
AGGACACTCTCCGTTAATAT+CGG + Chr5:4450575-4450594 None:intergenic 40.0%
AGTACAATTAACGGTACCAC+AGG + Chr5:4450551-4450570 None:intergenic 40.0%
CAAATGCAACTACACCGTAT+GGG - Chr5:4450225-4450244 MsG0580024408.01.T01:CDS 40.0%
CTATGAGAAGGAAGATTGAG+AGG + Chr5:4450156-4450175 None:intergenic 40.0%
GTACAAGTAACGCAAGAATC+TGG - Chr5:4450317-4450336 MsG0580024408.01.T01:intron 40.0%
TACACCACCAAACACAATCA+TGG - Chr5:4450429-4450448 MsG0580024408.01.T01:CDS 40.0%
TAGTGTTCCGTTACAATCAC+CGG + Chr5:4450392-4450411 None:intergenic 40.0%
TCTTGCGTTACTTGTACCAT+TGG + Chr5:4450314-4450333 None:intergenic 40.0%
TGGATGTTATGGCTATGAGA+AGG + Chr5:4450168-4450187 None:intergenic 40.0%
TGTCAAACCGGTGATTGTAA+CGG - Chr5:4450382-4450401 MsG0580024408.01.T01:intron 40.0%
! TGCTGGTTGCATCATCTTTA+GGG + Chr5:4450770-4450789 None:intergenic 40.0%
ACAAGGATGTTACATCCACC+TGG + Chr5:4450613-4450632 None:intergenic 45.0%
ACCAGCACATTCTCTTGTAC+GGG - Chr5:4450783-4450802 MsG0580024408.01.T01:CDS 45.0%
ATAAGTTGTTGGACCACACG+TGG + Chr5:4450706-4450725 None:intergenic 45.0%
TGCTGCAGCTATGGATGTTA+TGG + Chr5:4450179-4450198 None:intergenic 45.0%
! AGAGTGTCCTACTCCACTTA+AGG - Chr5:4450585-4450604 MsG0580024408.01.T01:CDS 45.0%
!! GTGCTGGTTGCATCATCTTT+AGG + Chr5:4450771-4450790 None:intergenic 45.0%
AGCACATTCTCTTGTACGGG+AGG - Chr5:4450786-4450805 MsG0580024408.01.T01:CDS 50.0%
CATCCACCTGGTACCTTAAG+TGG + Chr5:4450601-4450620 None:intergenic 50.0%
CCTGGTACCTTAAGTGGAGT+AGG + Chr5:4450595-4450614 None:intergenic 50.0%
GGTGGCATGAAACTCAACAC+AGG - Chr5:4450265-4450284 MsG0580024408.01.T01:CDS 50.0%
TCCCGTACAAGAGAATGTGC+TGG + Chr5:4450787-4450806 None:intergenic 50.0%
! ACTCCACTTAAGGTACCAGG+TGG - Chr5:4450595-4450614 MsG0580024408.01.T01:CDS 50.0%
! CCTACTCCACTTAAGGTACC+AGG - Chr5:4450592-4450611 MsG0580024408.01.T01:CDS 50.0%
!! GGTCTCGGAAAGTGTCAAAC+CGG - Chr5:4450370-4450389 MsG0580024408.01.T01:intron 50.0%
GTTGAGTTTCATGCCACCGC+CGG + Chr5:4450263-4450282 None:intergenic 55.0%
TCCATAGCTGCAGCACAAGC+AGG - Chr5:4450184-4450203 MsG0580024408.01.T01:CDS 55.0%
TCCTGCTTGTGCTGCAGCTA+TGG + Chr5:4450188-4450207 None:intergenic 55.0%
TTGAGTTTCATGCCACCGCC+GGG + Chr5:4450262-4450281 None:intergenic 55.0%
ACCAATGCCTCTGCCACGTG+TGG - Chr5:4450690-4450709 MsG0580024408.01.T01:CDS 60.0%
TGAGTTTCATGCCACCGCCG+GGG + Chr5:4450261-4450280 None:intergenic 60.0%
TGTTGGACCACACGTGGCAG+AGG + Chr5:4450700-4450719 None:intergenic 60.0%
! ACCACACGTGGCAGAGGCAT+TGG + Chr5:4450694-4450713 None:intergenic 60.0%
TTTCATGCCACCGCCGGGGA+AGG + Chr5:4450257-4450276 None:intergenic 65.0%
GGGGAAGGCTGCGGCCCATA+CGG + Chr5:4450242-4450261 None:intergenic 70.0%
GTATGGGCCGCAGCCTTCCC+CGG - Chr5:4450241-4450260 MsG0580024408.01.T01:CDS 70.0%
! GCCACCGCCGGGGAAGGCTG+CGG + Chr5:4450251-4450270 None:intergenic 80.0%
! TGGGCCGCAGCCTTCCCCGG+CGG - Chr5:4450244-4450263 MsG0580024408.01.T01:CDS 80.0%
! GCCGCAGCCTTCCCCGGCGG+TGG - Chr5:4450247-4450266 MsG0580024408.01.T01:CDS 85.0%
Chromosome Type Strat End Strand Name
Chr5 gene 4450142 4450839 4450142 ID=MsG0580024408.01;Name=MsG0580024408.01
Chr5 mRNA 4450142 4450839 4450142 ID=MsG0580024408.01.T01;Parent=MsG0580024408.01;Name=MsG0580024408.01.T01;_AED=0.27;_eAED=0.28;_QI=0|0|0|1|1|1|2|0|201
Chr5 exon 4450394 4450839 4450394 ID=MsG0580024408.01.T01:exon:29003;Parent=MsG0580024408.01.T01
Chr5 exon 4450142 4450301 4450142 ID=MsG0580024408.01.T01:exon:29002;Parent=MsG0580024408.01.T01
Chr5 CDS 4450394 4450839 4450394 ID=MsG0580024408.01.T01:cds;Parent=MsG0580024408.01.T01
Chr5 CDS 4450142 4450301 4450142 ID=MsG0580024408.01.T01:cds;Parent=MsG0580024408.01.T01
Gene Sequence

>MsG0580024408.01.T01

ATGAAAACAAACCTCTCAATCTTCCTTCTCATAGCCATAACATCCATAGCTGCAGCACAAGCAGGAAGATTCAATATCACAAACAAATGCAACTACACCGTATGGGCCGCAGCCTTCCCCGGCGGTGGCATGAAACTCAACACAGGTGAATCATGGAACATGAACATAACCAATGGTACAAGTAACGCAAGAATCTGGGGTCGAACCAATTGCACTTTCGACAATTCAGGTCTCGGAAAGTGTCAAACCGGTGATTGTAACGGAACACTAGAGTGTCAAACAATAGGTACACCACCAAACACAATCATGGAATTTGCTTTGAACATGTACAACGACCTTGATTTCTATGATGTTTCGCTTGTACAAGGTTTCAATATTCCAATTCTGTTAAAACCGTCTTTAAATTCCTGTGGTACCGTTAATTGTACTGCCGATATTAACGGAGAATCTGCAGCTACCAATGCCTCTGCCACGTGTGGTCCAACAACTTATTCTAAGTTCTTTAAGGATAGGTGCCCTTATGCTTATAGTTACCCTAAAGATGATGCAACCAGCACATTCTCTTGTACGGGAGGAACAACTTATGATGTTGTCTTTTGTCCTTAA

Protein sequence

>MsG0580024408.01.T01

MKTNLSIFLLIAITSIAAAQAGRFNITNKCNYTVWAAAFPGGGMKLNTGESWNMNITNGTSNARIWGRTNCTFDNSGLGKCQTGDCNGTLECQTIGTPPNTIMEFALNMYNDLDFYDVSLVQGFNIPILLKPSLNSCGTVNCTADINGESAATNASATCGPTTYSKFFKDRCPYAYSYPKDDATSTFSCTGGTTYDVVFCP*