AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380017995.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017995.01.T03 MTR_3g116500 99.301 143 1 0 28 170 2 144 5.14e-101 295
MsG0380017995.01.T03 MTR_3g116500 97.059 34 1 0 137 170 1 34 1.11e-15 72.8
MsG0380017995.01.T01 MTR_3g116500 78.571 196 6 3 1 196 109 268 7.71e-102 295
MsG0380017995.01.T01 MTR_3g116500 78.571 196 6 3 1 196 219 378 8.17e-101 296
MsG0380017995.01.T01 MTR_4g119620 38.095 105 58 3 2 106 93 190 1.35e-12 65.5
MsG0380017995.01.T01 MTR_4g119620 29.245 106 69 2 1 106 134 233 8.65e-11 60.5
MsG0380017995.01.T01 MTR_1g072140 34.615 104 61 2 4 107 86 182 5.13e-12 63.9
MsG0380017995.01.T02 MTR_3g116500 99.301 143 1 0 28 170 2 144 5.14e-101 295
MsG0380017995.01.T02 MTR_3g116500 97.059 34 1 0 137 170 1 34 1.11e-15 72.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017995.01.T03 AT4G34460 81.818 143 26 0 28 170 2 144 5.35e-73 223
MsG0380017995.01.T03 AT4G34460 81.818 143 26 0 28 170 2 144 1.13e-72 223
MsG0380017995.01.T03 AT4G34460 81.119 143 22 1 28 170 2 139 8.18e-69 213
MsG0380017995.01.T03 AT4G34460 87.179 78 10 0 93 170 5 82 3.65e-43 145
MsG0380017995.01.T01 AT4G34460 62.755 196 34 4 2 196 158 315 7.60e-76 230
MsG0380017995.01.T01 AT4G34460 62.755 196 34 4 2 196 215 372 1.61e-75 231
MsG0380017995.01.T01 AT4G34460 62.755 196 34 4 2 196 220 377 2.00e-75 231
MsG0380017995.01.T01 AT4G34460 78.378 111 21 2 2 111 220 328 5.76e-55 178
MsG0380017995.01.T01 AT5G25150 33.333 138 79 4 2 134 475 604 3.92e-12 64.7
MsG0380017995.01.T01 AT5G25150 33.333 138 79 4 2 134 475 604 3.95e-12 64.7
MsG0380017995.01.T01 AT3G49660 31.532 111 70 2 1 111 127 231 3.79e-11 61.2
MsG0380017995.01.T02 AT4G34460 81.818 143 26 0 28 170 2 144 5.35e-73 223
MsG0380017995.01.T02 AT4G34460 81.818 143 26 0 28 170 2 144 1.13e-72 223
MsG0380017995.01.T02 AT4G34460 81.119 143 22 1 28 170 2 139 8.18e-69 213
MsG0380017995.01.T02 AT4G34460 87.179 78 10 0 93 170 5 82 3.65e-43 145

Find 102 sgRNAs with CRISPR-Local

Find 353 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTATTTCTACTTATTATTT+TGG 0.116120 3:-102996575 MsG0380017995.01.T01:intron
CTATGTTTGGGATACTTTAT+TGG 0.165728 3:-102996761 MsG0380017995.01.T01:CDS
ACTCTCAGCATTTCCATTAA+TGG 0.169125 3:-102997101 MsG0380017995.01.T01:intron
TTTACTTCTACATGCGATTT+AGG 0.187054 3:-102996147 MsG0380017995.01.T01:intron
AAACACCCTGCTGTCATTTC+AGG 0.196292 3:+102996596 None:intergenic
GCATTATCTTGTATATAAAT+TGG 0.218211 3:-102996037 MsG0380017995.01.T01:intron
TTTGGAGTTGGATCCATTAA+TGG 0.220994 3:+102997088 None:intergenic
GTCTGATACATAAAACTTAT+AGG 0.258632 3:-102995374 MsG0380017995.01.T01:CDS
GTGCTTTAGTGTGTCCTATA+TGG 0.271414 3:-102996526 MsG0380017995.01.T01:intron
TACTATGTTTGCAACACTTT+TGG 0.275845 3:-102996646 MsG0380017995.01.T01:intron
TTTCCTGATGGAAATAGATT+TGG 0.276868 3:-102996952 MsG0380017995.01.T01:CDS
ATACTCCTAGTCTATATTAA+TGG 0.284395 3:+102995753 None:intergenic
TTGCTTCTTCATTTGATTGT+AGG 0.285981 3:-102995525 MsG0380017995.01.T01:intron
CAAGAGCAAGTACAAATAAA+TGG 0.293620 3:+102995606 None:intergenic
TGAGGGCAGGATCACCTGTT+TGG 0.300230 3:-102995469 MsG0380017995.01.T01:CDS
GTAAATTCATATTAATAATT+AGG 0.301487 3:-102998908 MsG0380017995.01.T01:five_prime_UTR
CAACTCCAAATGTTTGTATC+TGG 0.317443 3:-102997075 MsG0380017995.01.T01:intron
CTTGCAGATTGTTTGACATT+AGG 0.319869 3:-102996909 MsG0380017995.01.T01:CDS
TTACTTCTACATGCGATTTA+GGG 0.323714 3:-102996146 MsG0380017995.01.T01:intron
AAGTTGGGACACAAATTTAA+AGG 0.324926 3:-102995412 MsG0380017995.01.T01:CDS
TCCGGAAGACTTCTTATTGC+TGG 0.330505 3:-102996802 MsG0380017995.01.T01:CDS
CAAATGGCGATTGCTATGTT+TGG 0.331633 3:-102996774 MsG0380017995.01.T01:CDS
GAGGGCAGGATCACCTGTTT+GGG 0.353821 3:-102995468 MsG0380017995.01.T01:CDS
TGCTTTAGTGTGTCCTATAT+GGG 0.358583 3:-102996525 MsG0380017995.01.T01:intron
AATAAGAAGTCTTCCGGATA+TGG 0.370745 3:+102996807 None:intergenic
TTTGAAGAGATCCTAGATTC+AGG 0.385351 3:+102995498 None:intergenic
CGAGCAGTACGGACATTTCA+TGG 0.392393 3:-102997006 MsG0380017995.01.T01:CDS
TACTCCTAGTCTATATTAAT+GGG 0.396513 3:+102995754 None:intergenic
AAATGGCGATTGCTATGTTT+GGG 0.404058 3:-102996773 MsG0380017995.01.T01:CDS
TCCAGCAATAAGAAGTCTTC+CGG 0.412039 3:+102996801 None:intergenic
TAGAAATGTCGAAAGCATAA+TGG 0.414701 3:+102996111 None:intergenic
CACACGAGTGTCCCACAATC+TGG 0.420398 3:+102997035 None:intergenic
GGCCCATAAAACAAGGTCTT+AGG 0.423128 3:+102995909 None:intergenic
CTTATTGCTGGATATACAAA+TGG 0.425275 3:-102996790 MsG0380017995.01.T01:CDS
AGCCTCATACCACAGTGAAC+TGG 0.425493 3:-102996673 MsG0380017995.01.T01:intron
TGATTATGTAAAACAAAAGT+AGG 0.427534 3:-102996715 MsG0380017995.01.T01:intron
TGCTTTGTGTACAGGAAGTT+GGG 0.428629 3:-102995427 MsG0380017995.01.T01:CDS
CTAGGAGTATATTAAATCTC+AGG 0.431571 3:-102995740 MsG0380017995.01.T01:intron
TACTTGCTCTTGTACTTATG+TGG 0.434338 3:-102995595 MsG0380017995.01.T01:intron
TCCATTGCATTCTCCATATC+CGG 0.434553 3:-102996820 MsG0380017995.01.T01:CDS
AATTTACTTACAATTAGAAA+TGG 0.436508 3:+102998924 None:intergenic
GTGCTTTGTGTACAGGAAGT+TGG 0.441799 3:-102995428 MsG0380017995.01.T01:CDS
TTGTAGGTGGTCCTGAATCT+AGG 0.445164 3:-102995509 MsG0380017995.01.T01:intron
ATCAGCAGACAAACCCAAAC+AGG 0.447682 3:+102995455 None:intergenic
GCTTTCGACATTTCTATATG+TGG 0.451767 3:-102996104 MsG0380017995.01.T01:intron
AGTTAATATGAATTATTTGA+AGG 0.452801 3:-102995877 MsG0380017995.01.T01:intron
CCCCAGTTCACTGTGGTATG+AGG 0.458557 3:+102996671 None:intergenic
ACATGTAGACAAACCCATAT+AGG 0.458741 3:+102996512 None:intergenic
ACGTTCTCTGAGATTGTTGA+CGG 0.459466 3:+102998769 None:intergenic
ATGCGATTTAGGGTGAGTTC+TGG 0.461576 3:-102996136 MsG0380017995.01.T01:intron
TCTGTCAAATTCTTTCCTGA+TGG 0.470264 3:-102996964 MsG0380017995.01.T01:CDS
TATAAAAGCTCCACATCAAA+AGG 0.471824 3:+102995977 None:intergenic
TTCTGAAGAATGAAGAGAAA+AGG 0.471888 3:+102998872 None:intergenic
GTTCCAAATCTATTTCCATC+AGG 0.472273 3:+102996949 None:intergenic
TTGGGATACTTTATTGGCTA+AGG 0.475505 3:-102996755 MsG0380017995.01.T01:intron
CTTCTTCATTTGATTGTAGG+TGG 0.477896 3:-102995522 MsG0380017995.01.T01:intron
GCCTCATACCACAGTGAACT+GGG 0.484371 3:-102996672 MsG0380017995.01.T01:intron
TGTTTGGGTTTGTCTGCTGA+TGG 0.484615 3:-102995453 MsG0380017995.01.T01:CDS
AAGAACCAGATACAAACATT+TGG 0.492261 3:+102997070 None:intergenic
CAGATACAAACATTTGGAGT+TGG 0.493808 3:+102997076 None:intergenic
TTTGGAACTGGCTCAGAAGA+TGG 0.495617 3:-102996934 MsG0380017995.01.T01:CDS
GATGGAAATAGATTTGGAAC+TGG 0.496817 3:-102996946 MsG0380017995.01.T01:CDS
ACACAGCAGTGACAACGAAA+TGG 0.496865 3:-102996854 MsG0380017995.01.T01:CDS
GATGGAAGTGCTTTGTGTAC+AGG 0.510526 3:-102995435 MsG0380017995.01.T01:CDS
GCTGATTATATACTTGAAGT+TGG 0.510768 3:+102996878 None:intergenic
TCATATTAATAATTAGGTCG+TGG 0.511997 3:-102998902 MsG0380017995.01.T01:five_prime_UTR
TTCGACATTTCTATATGTGG+TGG 0.512414 3:-102996101 MsG0380017995.01.T01:intron
GTTTAACCTGAAATGACAGC+AGG 0.516090 3:-102996602 MsG0380017995.01.T01:intron
GCGATGCGACTGCCAGATTG+TGG 0.518560 3:-102997047 MsG0380017995.01.T01:CDS
TTAAAGTAGTAACTTTGACT+TGG 0.523409 3:+102996407 None:intergenic
TTAAAGTAGTAACTTTGACT+TGG 0.525362 3:+102996258 None:intergenic
TTAATCATGATGAGCTCACT+AGG 0.527561 3:-102996059 MsG0380017995.01.T01:intron
CTTCAAACTCTCATGAGGGC+AGG 0.534283 3:-102995482 MsG0380017995.01.T01:CDS
AGTATATTAAATCTCAGGCT+TGG 0.545801 3:-102995735 MsG0380017995.01.T01:intron
TAGTCTATATTAATGGGAGT+TGG 0.549153 3:+102995760 None:intergenic
CTCATCATGATTAATAGACT+CGG 0.555642 3:+102996068 None:intergenic
ATAGAAACTAAACATGCTGT+TGG 0.558584 3:+102996189 None:intergenic
CGATGCGACTGCCAGATTGT+GGG 0.579543 3:-102997046 MsG0380017995.01.T01:CDS
AGATTGTTTGACATTAGGAC+TGG 0.580110 3:-102996904 MsG0380017995.01.T01:CDS
CTACTGACAATAGTTGCACT+AGG 0.588679 3:+102995567 None:intergenic
CGGACATTTCATGGGCATGA+GGG 0.590801 3:-102996997 MsG0380017995.01.T01:CDS
GAGCAGTACGGACATTTCAT+GGG 0.596617 3:-102997005 MsG0380017995.01.T01:CDS
ACGGACATTTCATGGGCATG+AGG 0.601876 3:-102996998 MsG0380017995.01.T01:CDS
GAATTTGAATGAATCAGTGA+AGG 0.603269 3:-102998852 MsG0380017995.01.T01:five_prime_UTR
ATCTCTTCAAACTCTCATGA+GGG 0.603391 3:-102995486 MsG0380017995.01.T01:CDS
GTTGAGATGTGAAGTGTGAA+GGG 0.605981 3:+102998946 None:intergenic
AGAACGTCACATAGCTGCAA+CGG 0.607199 3:-102998795 MsG0380017995.01.T01:five_prime_UTR
GATTATGTAAAACAAAAGTA+GGG 0.607929 3:-102996714 MsG0380017995.01.T01:intron
GATCTCTTCAAACTCTCATG+AGG 0.611406 3:-102995487 MsG0380017995.01.T01:CDS
TCCGGATATGGAGAATGCAA+TGG 0.614685 3:+102996819 None:intergenic
GTGTGGCAAGTCGAGCAGTA+CGG 0.621594 3:-102997017 MsG0380017995.01.T01:CDS
GGTTGAGATGTGAAGTGTGA+AGG 0.629042 3:+102998945 None:intergenic
TGGAAAAGACAGGAGAAGGG+AGG 0.655173 3:-102995802 MsG0380017995.01.T01:CDS
AACTCCCATTAATATAGACT+AGG 0.657154 3:-102995758 MsG0380017995.01.T01:intron
TTTAACCTGAAATGACAGCA+GGG 0.672403 3:-102996601 MsG0380017995.01.T01:intron
CAGATTGTGGGACACTCGTG+TGG 0.674572 3:-102997034 MsG0380017995.01.T01:CDS
GGATATGGAGAATGCAATGG+AGG 0.676943 3:+102996822 None:intergenic
ATCATGATTAATAGACTCGG+AGG 0.704169 3:+102996071 None:intergenic
CCTCATACCACAGTGAACTG+GGG 0.706009 3:-102996671 MsG0380017995.01.T01:intron
GTACAAAATAAAATAAACAG+CGG 0.718453 3:+102995954 None:intergenic
TATCTGTATCAAGAAGAGAG+AGG 0.734700 3:+102998732 None:intergenic
TAGTAATCCCCAGTTCACTG+TGG 0.759868 3:+102996664 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTATATATTAAATTTAA+AGG + Chr3:102994964-102994983 None:intergenic 0.0%
!! AAAAAATTTAAATTTGTCTT+TGG - Chr3:102995012-102995031 MsG0380017995.01.T01:intron 10.0%
!! AAAAATATAACGATAATTAA+CGG + Chr3:102993813-102993832 None:intergenic 10.0%
!! GTAAATTCATATTAATAATT+AGG - Chr3:102994075-102994094 MsG0380017995.01.T01:three_prime_UTR 10.0%
!! TATTATTATTAAGCTAAAAT+CGG - Chr3:102995176-102995195 MsG0380017995.01.T01:intron 10.0%
!! TCAAAATAATAAAAAATTTG+GGG + Chr3:102994616-102994635 None:intergenic 10.0%
!!! AGACAAATTTAAATTTTTTA+AGG + Chr3:102995011-102995030 None:intergenic 10.0%
!!! TTATTTCTACTTATTATTTT+GGG - Chr3:102996409-102996428 MsG0380017995.01.T01:intron 10.0%
!!! TTTATTTCTACTTATTATTT+TGG - Chr3:102996408-102996427 MsG0380017995.01.T01:intron 10.0%
!!! TTTTTCTTTTTCAAAAAATA+TGG + Chr3:102997282-102997301 None:intergenic 10.0%
!! AATTTACTTACAATTAGAAA+TGG + Chr3:102994062-102994081 None:intergenic 15.0%
!! AGTTAATATGAATTATTTGA+AGG - Chr3:102997106-102997125 MsG0380017995.01.T01:intron 15.0%
!! GTAGCTAAAAATATATTATT+GGG + Chr3:102994668-102994687 None:intergenic 15.0%
!! TAGCTAAAAATATATTATTG+GGG + Chr3:102994667-102994686 None:intergenic 15.0%
!! TATTCAAATTTCTTCTTAAT+CGG - Chr3:102994512-102994531 MsG0380017995.01.T01:intron 15.0%
!! TGTTTAATCTCTATAAAATT+AGG + Chr3:102994934-102994953 None:intergenic 15.0%
!!! AAAAAGCATTATATTTATGA+TGG - Chr3:102997820-102997839 MsG0380017995.01.T01:intron 15.0%
!!! ACAAAGAATCTTATTTTATA+TGG + Chr3:102996618-102996637 None:intergenic 15.0%
!!! CAAAGAATCTTATTTTATAT+GGG + Chr3:102996617-102996636 None:intergenic 15.0%
!!! GAAATTTTTTCTTATTTTGA+AGG - Chr3:102997128-102997147 MsG0380017995.01.T01:intron 15.0%
!!! TAATTCCTAATTCTTTTTAA+AGG + Chr3:102997791-102997810 None:intergenic 15.0%
!!! TATCGTTATATTTTTTTTGA+AGG - Chr3:102993818-102993837 MsG0380017995.01.T01:three_prime_UTR 15.0%
!!! TTAAACCTTTAAAAAGAATT+AGG - Chr3:102997783-102997802 MsG0380017995.01.T01:intron 15.0%
!!! TTGATAATATTACTATACTA+TGG - Chr3:102998581-102998600 MsG0380017995.01.T01:five_prime_UTR 15.0%
!! ACTAGATATATTATTGTAGT+TGG - Chr3:102994639-102994658 MsG0380017995.01.T01:intron 20.0%
!! ATCTTTGTTGCTATAATATA+AGG - Chr3:102995206-102995225 MsG0380017995.01.T01:intron 20.0%
!! GATTATGTAAAACAAAAGTA+GGG - Chr3:102996269-102996288 MsG0380017995.01.T01:intron 20.0%
!! GCATTATCTTGTATATAAAT+TGG - Chr3:102996946-102996965 MsG0380017995.01.T01:CDS 20.0%
!! GGTAGCTAAAAATATATTAT+TGG + Chr3:102994669-102994688 None:intergenic 20.0%
!! GTACAAAATAAAATAAACAG+CGG + Chr3:102997032-102997051 None:intergenic 20.0%
!! TAATTACGAACGATAATTAA+CGG + Chr3:102993901-102993920 None:intergenic 20.0%
!! TATTTGATACAAATATGCAT+TGG + Chr3:102998610-102998629 None:intergenic 20.0%
!! TCTATCTTGAAAAAATGTTT+AGG - Chr3:102998702-102998721 MsG0380017995.01.T01:intron 20.0%
!! TCTTTGTTGCTATAATATAA+GGG - Chr3:102995207-102995226 MsG0380017995.01.T01:intron 20.0%
!! TGATTATGTAAAACAAAAGT+AGG - Chr3:102996268-102996287 MsG0380017995.01.T01:intron 20.0%
!! TTGTATCAAATAATATATCC+AGG - Chr3:102998618-102998637 MsG0380017995.01.T01:five_prime_UTR 20.0%
!!! AAACATTTTTTCAAGATAGA+CGG + Chr3:102998702-102998721 None:intergenic 20.0%
!!! ACAGAATCTTATTTTCTATA+TGG + Chr3:102996766-102996785 None:intergenic 20.0%
!!! AGCATTCATTTAAATTTTAC+AGG - Chr3:102995331-102995350 MsG0380017995.01.T01:intron 20.0%
!!! ATATTTTTGCTATAAAAGAG+AGG + Chr3:102998448-102998467 None:intergenic 20.0%
!!! CAGAATCTTATTTTCTATAT+GGG + Chr3:102996765-102996784 None:intergenic 20.0%
!!! GATTTCACTGATTAAATATA+TGG - Chr3:102998657-102998676 MsG0380017995.01.T01:intron 20.0%
!!! TATTTTTGCTATAAAAGAGA+GGG + Chr3:102998447-102998466 None:intergenic 20.0%
!!! TTTTTAAAGGTTTAACCTTA+AGG + Chr3:102997778-102997797 None:intergenic 20.0%
! AAAAATATGATACCAACTTC+AGG + Chr3:102998005-102998024 None:intergenic 25.0%
! AAAATATGATACCAACTTCA+GGG + Chr3:102998004-102998023 None:intergenic 25.0%
! AAGATGGAAGATTAATAGTA+TGG - Chr3:102995405-102995424 MsG0380017995.01.T01:CDS 25.0%
! AAGTTTATAACCTTTAGCAA+TGG - Chr3:102998921-102998940 MsG0380017995.01.T01:five_prime_UTR 25.0%
! AATTACGAACGATAATTAAC+GGG + Chr3:102993900-102993919 None:intergenic 25.0%
! ACTGATTAAATATATGGATG+TGG - Chr3:102998663-102998682 MsG0380017995.01.T01:intron 25.0%
! AGATCTATATGAAATCAGTT+GGG - Chr3:102995804-102995823 MsG0380017995.01.T01:CDS 25.0%
! ATACTCCTAGTCTATATTAA+TGG + Chr3:102997233-102997252 None:intergenic 25.0%
! CAAAAAATTTACCACTAACT+TGG + Chr3:102997961-102997980 None:intergenic 25.0%
! CCTAAAAAAAAAGTCAGTTA+CGG - Chr3:102994158-102994177 MsG0380017995.01.T01:three_prime_UTR 25.0%
! CGTAAAATTGAAGTTAGTTA+CGG + Chr3:102995073-102995092 None:intergenic 25.0%
! CTAATGCTTCATTTCATTAA+GGG - Chr3:102995108-102995127 MsG0380017995.01.T01:intron 25.0%
! CTGTATTTACTGAATGATAA+TGG - Chr3:102998282-102998301 MsG0380017995.01.T01:intron 25.0%
! GTCTGATACATAAAACTTAT+AGG - Chr3:102997609-102997628 MsG0380017995.01.T01:five_prime_UTR 25.0%
! GTGGAATAACATAAAACAAA+AGG - Chr3:102998327-102998346 MsG0380017995.01.T01:intron 25.0%
! TACTCCTAGTCTATATTAAT+GGG + Chr3:102997232-102997251 None:intergenic 25.0%
! TACTTCAAATAGTGAAATTG+AGG + Chr3:102999039-102999058 None:intergenic 25.0%
! TATAGGTTATGTGTGATATA+GGG - Chr3:102997626-102997645 MsG0380017995.01.T01:five_prime_UTR 25.0%
! TCATATTAATAATTAGGTCG+TGG - Chr3:102994081-102994100 MsG0380017995.01.T01:three_prime_UTR 25.0%
! TTAAAGTAGTAACTTTGACT+TGG + Chr3:102996579-102996598 None:intergenic 25.0%
! TTATAGGTTATGTGTGATAT+AGG - Chr3:102997625-102997644 MsG0380017995.01.T01:five_prime_UTR 25.0%
!! AAGTAAATAGTCCTATGTTT+TGG + Chr3:102999008-102999027 None:intergenic 25.0%
!! AATTTTACAGGTTTACTCAT+TGG - Chr3:102995343-102995362 MsG0380017995.01.T01:intron 25.0%
!! CGTAACTAACTTCAATTTTA+CGG - Chr3:102995071-102995090 MsG0380017995.01.T01:intron 25.0%
!! TTCATATTAACTCCTTTTAC+TGG + Chr3:102997098-102997117 None:intergenic 25.0%
!!! CAAGTTAGTGGTAAATTTTT+TGG - Chr3:102997959-102997978 MsG0380017995.01.T01:intron 25.0%
!!! GATTGAACTTTTAAAGAACT+AGG - Chr3:102997728-102997747 MsG0380017995.01.T01:intron 25.0%
!!! GGCATAGTTTTTTTTTAGTA+TGG - Chr3:102995825-102995844 MsG0380017995.01.T01:CDS 25.0%
!!! GGTTGAGATTTTTCTTATTT+TGG - Chr3:102997161-102997180 MsG0380017995.01.T01:intron 25.0%
!!! GTGATCAAACATGTTTTTAT+GGG - Chr3:102995680-102995699 MsG0380017995.01.T01:intron 25.0%
!!! TATTTTGAAGGTTTATCTTC+TGG - Chr3:102997140-102997159 MsG0380017995.01.T01:intron 25.0%
!!! TGATACAAATTGATTTGAAG+AGG + Chr3:102999153-102999172 None:intergenic 25.0%
!!! TTTCTTATTTTGGAAAAGAC+AGG - Chr3:102997171-102997190 MsG0380017995.01.T01:intron 25.0%
!!! TTTTATTTCGAAAGGTATTG+TGG - Chr3:102996435-102996454 MsG0380017995.01.T01:intron 25.0%
!!! TTTTGTAAGTGATTTGTTTG+AGG + Chr3:102994690-102994709 None:intergenic 25.0%
AAATAGAACAAACACTGTCA+AGG + Chr3:102995532-102995551 None:intergenic 30.0%
AAATAGTGAAATTGAGGAGA+CGG + Chr3:102999033-102999052 None:intergenic 30.0%
AACTCCCATTAATATAGACT+AGG - Chr3:102997225-102997244 MsG0380017995.01.T01:intron 30.0%
AAGAACCAGATACAAACATT+TGG + Chr3:102995916-102995935 None:intergenic 30.0%
AAGTTGGGACACAAATTTAA+AGG - Chr3:102997571-102997590 MsG0380017995.01.T01:five_prime_UTR 30.0%
AATCTTCTGGTCATAATACT+GGG - Chr3:102997928-102997947 MsG0380017995.01.T01:intron 30.0%
ACTGAACACAAATTAATGGT+TGG + Chr3:102994540-102994559 None:intergenic 30.0%
AGTATATTAAATCTCAGGCT+TGG - Chr3:102997248-102997267 MsG0380017995.01.T01:five_prime_UTR 30.0%
ATAGAAACTAAACATGCTGT+TGG + Chr3:102996797-102996816 None:intergenic 30.0%
ATAGGTTATGTGTGATATAG+GGG - Chr3:102997627-102997646 MsG0380017995.01.T01:five_prime_UTR 30.0%
ATATAAGGGAATTGCTGTAT+TGG - Chr3:102995221-102995240 MsG0380017995.01.T01:intron 30.0%
ATGGGAATCTAAATGTTTCA+AGG - Chr3:102995578-102995597 MsG0380017995.01.T01:intron 30.0%
ATTGAGTCAATGTTGTTAGT+TGG + Chr3:102998414-102998433 None:intergenic 30.0%
CAAGAGCAAGTACAAATAAA+TGG + Chr3:102997380-102997399 None:intergenic 30.0%
CTCATCATGATTAATAGACT+CGG + Chr3:102996918-102996937 None:intergenic 30.0%
CTGAACTGAACACAAATTAA+TGG + Chr3:102994544-102994563 None:intergenic 30.0%
CTTATTGCTGGATATACAAA+TGG - Chr3:102996193-102996212 MsG0380017995.01.T01:intron 30.0%
GAATTTGAATGAATCAGTGA+AGG - Chr3:102994131-102994150 MsG0380017995.01.T01:three_prime_UTR 30.0%
GAGATCTATATGAAATCAGT+TGG - Chr3:102995803-102995822 MsG0380017995.01.T01:CDS 30.0%
GCTAATGCTTCATTTCATTA+AGG - Chr3:102995107-102995126 MsG0380017995.01.T01:intron 30.0%
GCTGATTATATACTTGAAGT+TGG + Chr3:102996108-102996127 None:intergenic 30.0%
TAGTCTATATTAATGGGAGT+TGG + Chr3:102997226-102997245 None:intergenic 30.0%
TATAAAAGCTCCACATCAAA+AGG + Chr3:102997009-102997028 None:intergenic 30.0%
TATAAGGGAATTGCTGTATT+GGG - Chr3:102995222-102995241 MsG0380017995.01.T01:intron 30.0%
TCTAGTGTAAACCAAAACAT+AGG - Chr3:102998994-102999013 MsG0380017995.01.T03:intron 30.0%
TTACTTCTACATGCGATTTA+GGG - Chr3:102996837-102996856 MsG0380017995.01.T01:CDS 30.0%
TTGAAGCTAACTTCCAAAAT+TGG + Chr3:102997660-102997679 None:intergenic 30.0%
TTGCTTCTTCATTTGATTGT+AGG - Chr3:102997458-102997477 MsG0380017995.01.T01:five_prime_UTR 30.0%
TTTACTTCTACATGCGATTT+AGG - Chr3:102996836-102996855 MsG0380017995.01.T01:CDS 30.0%
TTTCCTGATGGAAATAGATT+TGG - Chr3:102996031-102996050 MsG0380017995.01.T01:intron 30.0%
! AAGCTAGAGGAATTTTTATG+AGG + Chr3:102995041-102995060 None:intergenic 30.0%
! ACACTTTTGGCAAAGATAAT+TGG - Chr3:102996350-102996369 MsG0380017995.01.T01:intron 30.0%
! AGCTAGAGGAATTTTTATGA+GGG + Chr3:102995040-102995059 None:intergenic 30.0%
! AGGAAGATTCGATTTTACAA+TGG + Chr3:102999133-102999152 None:intergenic 30.0%
! CTAGGAGTATATTAAATCTC+AGG - Chr3:102997243-102997262 MsG0380017995.01.T01:five_prime_UTR 30.0%
! CTATGTTTGGGATACTTTAT+TGG - Chr3:102996222-102996241 MsG0380017995.01.T01:intron 30.0%
! CTTTTGTAACTTTTCGCTTT+TGG - Chr3:102999181-102999200 MsG0380017995.01.T03:intron 30.0%
! GAAGATTCGATTTTACAATG+GGG + Chr3:102999131-102999150 None:intergenic 30.0%
! GGAAGATTCGATTTTACAAT+GGG + Chr3:102999132-102999151 None:intergenic 30.0%
! TACTATGTTTGCAACACTTT+TGG - Chr3:102996337-102996356 MsG0380017995.01.T01:intron 30.0%
! TAGAAATGTCGAAAGCATAA+TGG + Chr3:102996875-102996894 None:intergenic 30.0%
! TTCTGAAGAATGAAGAGAAA+AGG + Chr3:102994114-102994133 None:intergenic 30.0%
! TTTTTATGGGATATTACCAC+TGG - Chr3:102995693-102995712 MsG0380017995.01.T01:intron 30.0%
!! AATGATAATGGTGAGCTAAA+AGG - Chr3:102998294-102998313 MsG0380017995.01.T01:intron 30.0%
!! ATCCTAAAGGAAGTATGTTT+TGG + Chr3:102997886-102997905 None:intergenic 30.0%
!! GGTGATCAAACATGTTTTTA+TGG - Chr3:102995679-102995698 MsG0380017995.01.T01:intron 30.0%
!! TACTTCCTTTAGGATTGTTA+AGG - Chr3:102997891-102997910 MsG0380017995.01.T01:intron 30.0%
!! TGTTGACTTTGGTCAAAAAT+TGG - Chr3:102998892-102998911 MsG0380017995.01.T01:five_prime_UTR 30.0%
!! TTGGGAGATTTTATTTCGAA+AGG - Chr3:102996427-102996446 MsG0380017995.01.T01:intron 30.0%
!!! CCGTAACTGACTTTTTTTTT+AGG + Chr3:102994161-102994180 None:intergenic 30.0%
AAATGGCGATTGCTATGTTT+GGG - Chr3:102996210-102996229 MsG0380017995.01.T01:intron 35.0%
AAGGTCCTTAACAATCCTAA+AGG + Chr3:102997899-102997918 None:intergenic 35.0%
AATAAGAAGTCTTCCGGATA+TGG + Chr3:102996179-102996198 None:intergenic 35.0%
AATGTTTCAAGGATGCTTAG+TGG - Chr3:102995589-102995608 MsG0380017995.01.T01:intron 35.0%
ACATGTAGACAAACCCATAT+AGG + Chr3:102996474-102996493 None:intergenic 35.0%
ACTCTCAGCATTTCCATTAA+TGG - Chr3:102995882-102995901 MsG0380017995.01.T01:intron 35.0%
AGATTGTTTGACATTAGGAC+TGG - Chr3:102996079-102996098 MsG0380017995.01.T01:intron 35.0%
AGTTCTACAGCAAAGGATAT+CGG + Chr3:102994409-102994428 None:intergenic 35.0%
AGTTTCGTCAATTGTGTTGA+GGG + Chr3:102998142-102998161 None:intergenic 35.0%
ATACTTTGACTCCTTTGTCT+GGG - Chr3:102998816-102998835 MsG0380017995.01.T01:five_prime_UTR 35.0%
ATCATGATTAATAGACTCGG+AGG + Chr3:102996915-102996934 None:intergenic 35.0%
ATCTCTTCAAACTCTCATGA+GGG - Chr3:102997497-102997516 MsG0380017995.01.T01:five_prime_UTR 35.0%
ATCTTAATTCACCCACTGAT+AGG - Chr3:102995555-102995574 MsG0380017995.01.T01:intron 35.0%
ATTGTTAGTGCATCTCAAGA+TGG - Chr3:102995389-102995408 MsG0380017995.01.T01:CDS 35.0%
ATTTGGATCAGTCAAGACTT+GGG - Chr3:102999092-102999111 MsG0380017995.01.T03:intron 35.0%
CAACTCCAAATGTTTGTATC+TGG - Chr3:102995908-102995927 MsG0380017995.01.T01:intron 35.0%
CAATCCTACAATCATTCTAG+TGG + Chr3:102997713-102997732 None:intergenic 35.0%
CCAGAAGATTCATTTATGCA+AGG + Chr3:102997918-102997937 None:intergenic 35.0%
CCTTGCATAAATGAATCTTC+TGG - Chr3:102997915-102997934 MsG0380017995.01.T01:intron 35.0%
CTCCAAAACATACTTCCTTT+AGG - Chr3:102997881-102997900 MsG0380017995.01.T01:intron 35.0%
CTTCTTCATTTGATTGTAGG+TGG - Chr3:102997461-102997480 MsG0380017995.01.T01:five_prime_UTR 35.0%
CTTGCAGATTGTTTGACATT+AGG - Chr3:102996074-102996093 MsG0380017995.01.T01:intron 35.0%
GAAGACACTCACTTAATTAC+TGG - Chr3:102995652-102995671 MsG0380017995.01.T01:intron 35.0%
GAATCTTCTGGTCATAATAC+TGG - Chr3:102997927-102997946 MsG0380017995.01.T01:intron 35.0%
GCTTTCGACATTTCTATATG+TGG - Chr3:102996879-102996898 MsG0380017995.01.T01:CDS 35.0%
GTTCCAAATCTATTTCCATC+AGG + Chr3:102996037-102996056 None:intergenic 35.0%
TACAGGTTTACTCATTGGAT+TGG - Chr3:102995348-102995367 MsG0380017995.01.T01:intron 35.0%
TACCACGATGTGTTAAATTG+AGG + Chr3:102994472-102994491 None:intergenic 35.0%
TACTTGCATCTTGCAGATAT+GGG - Chr3:102998742-102998761 MsG0380017995.01.T01:five_prime_UTR 35.0%
TACTTGCTCTTGTACTTATG+TGG - Chr3:102997388-102997407 MsG0380017995.01.T01:five_prime_UTR 35.0%
TAGGTTATGTGTGATATAGG+GGG - Chr3:102997628-102997647 MsG0380017995.01.T01:five_prime_UTR 35.0%
TATAAAGCTTCCTTGTGCAT+GGG - Chr3:102995457-102995476 MsG0380017995.01.T01:CDS 35.0%
TATCTGTATCAAGAAGAGAG+AGG + Chr3:102994254-102994273 None:intergenic 35.0%
TCATTTCTCTTTGTAGTTGC+TGG - Chr3:102994339-102994358 MsG0380017995.01.T01:intron 35.0%
TCTGTCAAATTCTTTCCTGA+TGG - Chr3:102996019-102996038 MsG0380017995.01.T01:intron 35.0%
TGAGCTAAAAGGTTCTACTA+TGG - Chr3:102998305-102998324 MsG0380017995.01.T01:intron 35.0%
TGCACTAATTCCATTGCTAA+AGG + Chr3:102998934-102998953 None:intergenic 35.0%
TGCTTTAGTGTGTCCTATAT+GGG - Chr3:102996458-102996477 MsG0380017995.01.T01:intron 35.0%
TTAATCATGATGAGCTCACT+AGG - Chr3:102996924-102996943 MsG0380017995.01.T01:CDS 35.0%
TTACTTGCATCTTGCAGATA+TGG - Chr3:102998741-102998760 MsG0380017995.01.T01:five_prime_UTR 35.0%
TTCCTCAATTTAACACATCG+TGG - Chr3:102994467-102994486 MsG0380017995.01.T01:intron 35.0%
TTCGACATTTCTATATGTGG+TGG - Chr3:102996882-102996901 MsG0380017995.01.T01:CDS 35.0%
TTTAACCTGAAATGACAGCA+GGG - Chr3:102996382-102996401 MsG0380017995.01.T01:intron 35.0%
TTTGAAGAGATCCTAGATTC+AGG + Chr3:102997488-102997507 None:intergenic 35.0%
! CAGATACAAACATTTGGAGT+TGG + Chr3:102995910-102995929 None:intergenic 35.0%
! CTAGAAGATTCTAGAAGAGA+GGG + Chr3:102998507-102998526 None:intergenic 35.0%
! CTAGAGGAATTTTTATGAGG+GGG + Chr3:102995038-102995057 None:intergenic 35.0%
! GATGGAAATAGATTTGGAAC+TGG - Chr3:102996037-102996056 MsG0380017995.01.T01:intron 35.0%
! GCTAGAGGAATTTTTATGAG+GGG + Chr3:102995039-102995058 None:intergenic 35.0%
! GCTTTATAGCATGAGTTTTC+TGG + Chr3:102995445-102995464 None:intergenic 35.0%
! TATCACAATGCCTTTTGATG+TGG - Chr3:102996996-102997015 MsG0380017995.01.T01:CDS 35.0%
! TTGGAAGTTAGCTTCAATGT+TGG - Chr3:102997663-102997682 MsG0380017995.01.T01:intron 35.0%
! TTGGGATACTTTATTGGCTA+AGG - Chr3:102996228-102996247 MsG0380017995.01.T01:intron 35.0%
! TTTGCTATAAAAGAGAGGGA+AGG + Chr3:102998443-102998462 None:intergenic 35.0%
! TTTGGAGTTGGATCCATTAA+TGG + Chr3:102995898-102995917 None:intergenic 35.0%
! TTTTACTGGCCCATAAAACA+AGG + Chr3:102997084-102997103 None:intergenic 35.0%
!! ACTCACTTAATTACTGGTTC+TGG - Chr3:102995658-102995677 MsG0380017995.01.T01:intron 35.0%
!! ATTTTGGAAAAGACAGGAGA+AGG - Chr3:102997177-102997196 MsG0380017995.01.T01:intron 35.0%
!! TTCTAGAATCTTCTAGCATG+TGG - Chr3:102998511-102998530 MsG0380017995.01.T01:intron 35.0%
!! TTGTTTTATGGGCCAGTAAA+AGG - Chr3:102997083-102997102 MsG0380017995.01.T01:intron 35.0%
!! TTTTGGAAAAGACAGGAGAA+GGG - Chr3:102997178-102997197 MsG0380017995.01.T01:intron 35.0%
!!! TGCCTAAGACCTTGTTTTAT+GGG - Chr3:102997072-102997091 MsG0380017995.01.T01:intron 35.0%
!!! TTGCCTAAGACCTTGTTTTA+TGG - Chr3:102997071-102997090 MsG0380017995.01.T01:intron 35.0%
AAAAGAGAAGCAGAGACAGA+TGG - Chr3:102993940-102993959 MsG0380017995.01.T01:three_prime_UTR 40.0%
AAACCTTTCCAGTATGACCT+TGG + Chr3:102994434-102994453 None:intergenic 40.0%
AACACAAGAACCAATGAGCA+TGG + Chr3:102998971-102998990 None:intergenic 40.0%
AAGTATGAGTCTTTACCCCA+TGG + Chr3:102998802-102998821 None:intergenic 40.0%
AATTCACCCACTGATAGGAT+GGG - Chr3:102995560-102995579 MsG0380017995.01.T01:intron 40.0%
AGAATGTGTCCAATCGTTTG+AGG + Chr3:102998167-102998186 None:intergenic 40.0%
ATCTTGCAGATATGGGCATT+TGG - Chr3:102998749-102998768 MsG0380017995.01.T01:five_prime_UTR 40.0%
ATGAACCACAATACCCTACA+AGG + Chr3:102998847-102998866 None:intergenic 40.0%
ATGAGCATGGAGCTAAACAA+AGG + Chr3:102998958-102998977 None:intergenic 40.0%
ATGCAACAGATTGACCAGTT+GGG + Chr3:102995502-102995521 None:intergenic 40.0%
ATGTATGTTCACAGACACAG+TGG - Chr3:102999060-102999079 MsG0380017995.01.T03:intron 40.0%
ATTAAGTGAGTGTCTTCACC+TGG + Chr3:102995649-102995668 None:intergenic 40.0%
CAAATACCCTTAGCTACACA+AGG + Chr3:102994589-102994608 None:intergenic 40.0%
CAAATGGCGATTGCTATGTT+TGG - Chr3:102996209-102996228 MsG0380017995.01.T01:intron 40.0%
CACAGTGGTTGAATGAGATT+TGG - Chr3:102999075-102999094 MsG0380017995.01.T03:intron 40.0%
CATACTTTGACTCCTTTGTC+TGG - Chr3:102998815-102998834 MsG0380017995.01.T01:five_prime_UTR 40.0%
CCTAGAATTGTCTCACTGAT+AGG - Chr3:102998040-102998059 MsG0380017995.01.T01:intron 40.0%
CCTATCAGTGAGACAATTCT+AGG + Chr3:102998043-102998062 None:intergenic 40.0%
CTACTGACAATAGTTGCACT+AGG + Chr3:102997419-102997438 None:intergenic 40.0%
CTATAAAGCTTCCTTGTGCA+TGG - Chr3:102995456-102995475 MsG0380017995.01.T01:CDS 40.0%
GAAGAAGTTGAACGAACAAG+TGG + Chr3:102994012-102994031 None:intergenic 40.0%
GACATACTGCAGATGTACTT+AGG - Chr3:102995753-102995772 MsG0380017995.01.T01:intron 40.0%
GAGTTTCGTCAATTGTGTTG+AGG + Chr3:102998143-102998162 None:intergenic 40.0%
GATCTCTTCAAACTCTCATG+AGG - Chr3:102997496-102997515 MsG0380017995.01.T01:five_prime_UTR 40.0%
GATGCATTGGAAGCAAGATT+GGG + Chr3:102998199-102998218 None:intergenic 40.0%
GATTTGGATCAGTCAAGACT+TGG - Chr3:102999091-102999110 MsG0380017995.01.T03:intron 40.0%
GCTAAAAGGTTCTACTATGG+TGG - Chr3:102998308-102998327 MsG0380017995.01.T01:intron 40.0%
GTCAATGTTGTTAGTTGGAG+AGG + Chr3:102998409-102998428 None:intergenic 40.0%
GTGCTTTAGTGTGTCCTATA+TGG - Chr3:102996457-102996476 MsG0380017995.01.T01:intron 40.0%
GTTGAGATGTGAAGTGTGAA+GGG + Chr3:102994040-102994059 None:intergenic 40.0%
GTTTAACCTGAAATGACAGC+AGG - Chr3:102996381-102996400 MsG0380017995.01.T01:intron 40.0%
TAATTCACCCACTGATAGGA+TGG - Chr3:102995559-102995578 MsG0380017995.01.T01:intron 40.0%
TACGCCACTAGAATGATTGT+AGG - Chr3:102997706-102997725 MsG0380017995.01.T01:intron 40.0%
TAGATTCCCATCCTATCAGT+GGG + Chr3:102995569-102995588 None:intergenic 40.0%
TAGTAAGTGATAAGACACCG+AGG + Chr3:102998541-102998560 None:intergenic 40.0%
TCATCCTCGGATGTATTCAA+TGG - Chr3:102998226-102998245 MsG0380017995.01.T01:intron 40.0%
TCATCTTGTCAGTATGTTCC+AGG - Chr3:102995628-102995647 MsG0380017995.01.T01:intron 40.0%
TCCAGCAATAAGAAGTCTTC+CGG + Chr3:102996185-102996204 None:intergenic 40.0%
TCCATTGCATTCTCCATATC+CGG - Chr3:102996163-102996182 MsG0380017995.01.T01:intron 40.0%
TGCTTTGTGTACAGGAAGTT+GGG - Chr3:102997556-102997575 MsG0380017995.01.T01:five_prime_UTR 40.0%
TTAGATTCCCATCCTATCAG+TGG + Chr3:102995570-102995589 None:intergenic 40.0%
TTATTATTTACTGACGCCGC+CGG + Chr3:102993976-102993995 None:intergenic 40.0%
TTGAAGTTAGTTACGGTCAG+CGG + Chr3:102995066-102995085 None:intergenic 40.0%
TTTGGAGGTGAATTTCAGTC+TGG - Chr3:102995731-102995750 MsG0380017995.01.T01:intron 40.0%
! AAGGCACATTCTAGAAGAGA+GGG - Chr3:102998073-102998092 MsG0380017995.01.T01:intron 40.0%
! AGGATGCTTAGTGGACATAA+AGG - Chr3:102995598-102995617 MsG0380017995.01.T01:intron 40.0%
! GCTAGAAGATTCTAGAAGAG+AGG + Chr3:102998508-102998527 None:intergenic 40.0%
! TTGTTTAGCTCCATGCTCAT+TGG - Chr3:102998958-102998977 MsG0380017995.01.T03:intron 40.0%
!! AACATCAGAAGCATCACTAC+TGG + Chr3:102998876-102998895 None:intergenic 40.0%
!! ACGTTCTCTGAGATTGTTGA+CGG + Chr3:102994217-102994236 None:intergenic 40.0%
!! ATTCTAGGACAAAACAGCTG+AGG + Chr3:102998028-102998047 None:intergenic 40.0%
!! CTTGTGTAGCTAAGGGTATT+TGG - Chr3:102994587-102994606 MsG0380017995.01.T01:intron 40.0%
!! GATGCTTCTGATGTTGACTT+TGG - Chr3:102998881-102998900 MsG0380017995.01.T01:five_prime_UTR 40.0%
!! TAGTTAGGAGTATTGTGCTC+TGG + Chr3:102998378-102998397 None:intergenic 40.0%
AAGGGAGGCTGAAAAAGAGT+GGG - Chr3:102997196-102997215 MsG0380017995.01.T01:intron 45.0%
AAGGTGATTTGAGCCATCCA+TGG - Chr3:102998782-102998801 MsG0380017995.01.T01:five_prime_UTR 45.0%
ACACAGCAGTGACAACGAAA+TGG - Chr3:102996129-102996148 MsG0380017995.01.T01:intron 45.0%
ACTGATAGGACATCTAGGCA+AGG - Chr3:102998054-102998073 MsG0380017995.01.T01:intron 45.0%
ACTGGTCAATCTGTTGCATG+CGG - Chr3:102995503-102995522 MsG0380017995.01.T01:CDS 45.0%
AGAACGTCACATAGCTGCAA+CGG - Chr3:102994188-102994207 MsG0380017995.01.T01:three_prime_UTR 45.0%
AGAACTCTCCAAGGTCATAC+TGG - Chr3:102994423-102994442 MsG0380017995.01.T01:intron 45.0%
AGGTGATTTGAGCCATCCAT+GGG - Chr3:102998783-102998802 MsG0380017995.01.T01:five_prime_UTR 45.0%
AGTTCAGTTGACCGTAACCA+GGG - Chr3:102994557-102994576 MsG0380017995.01.T01:intron 45.0%
ATCAGCAGACAAACCCAAAC+AGG + Chr3:102997531-102997550 None:intergenic 45.0%
ATCATGTTCTGCCCTGAAGT+TGG - Chr3:102997990-102998009 MsG0380017995.01.T01:intron 45.0%
ATCGGTGGGACCAAAAGTAA+CGG + Chr3:102994391-102994410 None:intergenic 45.0%
ATCTTGCTTCCAATGCATCC+AGG - Chr3:102998200-102998219 MsG0380017995.01.T01:intron 45.0%
ATGAGTCTTTACCCCATGGA+TGG + Chr3:102998798-102998817 None:intergenic 45.0%
CATGCAACAGATTGACCAGT+TGG + Chr3:102995503-102995522 None:intergenic 45.0%
CATGCCATTGAATACATCCG+AGG + Chr3:102998233-102998252 None:intergenic 45.0%
CATGTCATAACCCATGCACA+AGG + Chr3:102995470-102995489 None:intergenic 45.0%
CCTCCAAAACAGATGTTCGA+AGG + Chr3:102995719-102995738 None:intergenic 45.0%
CTACAGCAAAGGATATCGGT+GGG + Chr3:102994405-102994424 None:intergenic 45.0%
CTTGGAGAGTTCTACAGCAA+AGG + Chr3:102994416-102994435 None:intergenic 45.0%
GAGCAGTACGGACATTTCAT+GGG - Chr3:102995978-102995997 MsG0380017995.01.T01:intron 45.0%
GCGAATCCTTGTGTAGCTAA+GGG - Chr3:102994580-102994599 MsG0380017995.01.T01:intron 45.0%
GCTGGTTATGCAAAGTCTCA+AGG - Chr3:102994357-102994376 MsG0380017995.01.T01:intron 45.0%
GGAGAGGTTTCTCTCTAGTT+AGG + Chr3:102998393-102998412 None:intergenic 45.0%
GGATATGGAGAATGCAATGG+AGG + Chr3:102996164-102996183 None:intergenic 45.0%
GGATGCATTGGAAGCAAGAT+TGG + Chr3:102998200-102998219 None:intergenic 45.0%
GGCCCATAAAACAAGGTCTT+AGG + Chr3:102997077-102997096 None:intergenic 45.0%
GGTTGAGATGTGAAGTGTGA+AGG + Chr3:102994041-102994060 None:intergenic 45.0%
GTCTCACTGATAGGACATCT+AGG - Chr3:102998049-102998068 MsG0380017995.01.T01:intron 45.0%
GTGCTTTGTGTACAGGAAGT+TGG - Chr3:102997555-102997574 MsG0380017995.01.T01:five_prime_UTR 45.0%
GTTATGTGTGATATAGGGGG+TGG - Chr3:102997631-102997650 MsG0380017995.01.T01:five_prime_UTR 45.0%
TAGTAATCCCCAGTTCACTG+TGG + Chr3:102996322-102996341 None:intergenic 45.0%
TATTATTTACTGACGCCGCC+GGG + Chr3:102993975-102993994 None:intergenic 45.0%
TCAAGACTTGGGAGGATGTT+TGG - Chr3:102999103-102999122 MsG0380017995.01.T03:intron 45.0%
TCCACATACATCAGCATTCC+TGG + Chr3:102998639-102998658 None:intergenic 45.0%
TCCAGGAATGCTGATGTATG+TGG - Chr3:102998635-102998654 MsG0380017995.01.T01:intron 45.0%
TCCGGAAGACTTCTTATTGC+TGG - Chr3:102996181-102996200 MsG0380017995.01.T01:intron 45.0%
TCCGGATATGGAGAATGCAA+TGG + Chr3:102996167-102996186 None:intergenic 45.0%
TCTACAGCAAAGGATATCGG+TGG + Chr3:102994406-102994425 None:intergenic 45.0%
TCTCCAAGGTCATACTGGAA+AGG - Chr3:102994428-102994447 MsG0380017995.01.T01:intron 45.0%
TGCAACAGATTGACCAGTTG+GGG + Chr3:102995501-102995520 None:intergenic 45.0%
TGCAGATATGGGCATTTGGA+GGG - Chr3:102998753-102998772 MsG0380017995.01.T01:five_prime_UTR 45.0%
TTGCAGATATGGGCATTTGG+AGG - Chr3:102998752-102998771 MsG0380017995.01.T01:five_prime_UTR 45.0%
TTGTAGGTGGTCCTGAATCT+AGG - Chr3:102997474-102997493 MsG0380017995.01.T01:five_prime_UTR 45.0%
! AAACACCCTGCTGTCATTTC+AGG + Chr3:102996390-102996409 None:intergenic 45.0%
! ATGCGATTTAGGGTGAGTTC+TGG - Chr3:102996847-102996866 MsG0380017995.01.T01:CDS 45.0%
! CAAGGCACATTCTAGAAGAG+AGG - Chr3:102998072-102998091 MsG0380017995.01.T01:intron 45.0%
! CTTTGCTGTAGAACTCTCCA+AGG - Chr3:102994414-102994433 MsG0380017995.01.T01:intron 45.0%
! TAAGAGTACGCACGCAATTG+CGG - Chr3:102995140-102995159 MsG0380017995.01.T01:intron 45.0%
! TAGGGGGTGGTTACCAATTT+TGG - Chr3:102997644-102997663 MsG0380017995.01.T01:intron 45.0%
! TGGCCTTCGAACATCTGTTT+TGG - Chr3:102995713-102995732 MsG0380017995.01.T01:intron 45.0%
! TGGGACTTGTTCCAAGTTAG+TGG - Chr3:102997947-102997966 MsG0380017995.01.T01:intron 45.0%
! TGTTTGGGTTTGTCTGCTGA+TGG - Chr3:102997530-102997549 MsG0380017995.01.T01:five_prime_UTR 45.0%
! TTTGGAACTGGCTCAGAAGA+TGG - Chr3:102996049-102996068 MsG0380017995.01.T01:intron 45.0%
!! CCTTCGAACATCTGTTTTGG+AGG - Chr3:102995716-102995735 MsG0380017995.01.T01:intron 45.0%
!! GATGGAAGTGCTTTGTGTAC+AGG - Chr3:102997548-102997567 MsG0380017995.01.T01:five_prime_UTR 45.0%
!! GGTAGAACTCCCGTTACTTT+TGG - Chr3:102994378-102994397 MsG0380017995.01.T01:intron 45.0%
!! TAGGAGTATTGTGCTCTGGT+AGG + Chr3:102998374-102998393 None:intergenic 45.0%
!! ATTCAAAATAATAAAAAATT+TGG + Chr3:102994618-102994637 None:intergenic 5.0%
!! TTCAAAATAATAAAAAATTT+GGG + Chr3:102994617-102994636 None:intergenic 5.0%
AACAGATGTTCGAAGGCCAG+TGG + Chr3:102995712-102995731 None:intergenic 50.0%
ACATGTGCTTTCTCCCCAAC+TGG - Chr3:102995485-102995504 MsG0380017995.01.T01:CDS 50.0%
ACGGACATTTCATGGGCATG+AGG - Chr3:102995985-102996004 MsG0380017995.01.T01:intron 50.0%
AGAGAAGCAGAGACAGATGG+AGG - Chr3:102993943-102993962 MsG0380017995.01.T01:three_prime_UTR 50.0%
AGCCTCATACCACAGTGAAC+TGG - Chr3:102996310-102996329 MsG0380017995.01.T01:intron 50.0%
CAGTTCAGTTGACCGTAACC+AGG - Chr3:102994556-102994575 MsG0380017995.01.T01:intron 50.0%
CCACAATACCCTACAAGGAG+TGG + Chr3:102998842-102998861 None:intergenic 50.0%
CCTCATACCACAGTGAACTG+GGG - Chr3:102996312-102996331 MsG0380017995.01.T01:intron 50.0%
CGAAACTCGCCTCAAACGAT+TGG - Chr3:102998155-102998174 MsG0380017995.01.T01:intron 50.0%
CGAGCAGTACGGACATTTCA+TGG - Chr3:102995977-102995996 MsG0380017995.01.T01:intron 50.0%
CGGACATTTCATGGGCATGA+GGG - Chr3:102995986-102996005 MsG0380017995.01.T01:intron 50.0%
CTTCAAACTCTCATGAGGGC+AGG - Chr3:102997501-102997520 MsG0380017995.01.T01:five_prime_UTR 50.0%
GAAGGGAGGCTGAAAAAGAG+TGG - Chr3:102997195-102997214 MsG0380017995.01.T01:intron 50.0%
GATGGCATGCGAGCTTATAG+AGG - Chr3:102997838-102997857 MsG0380017995.01.T01:intron 50.0%
GCCTCATACCACAGTGAACT+GGG - Chr3:102996311-102996330 MsG0380017995.01.T01:intron 50.0%
GGCGAATCCTTGTGTAGCTA+AGG - Chr3:102994579-102994598 MsG0380017995.01.T01:intron 50.0%
GGTGATTTGAGCCATCCATG+GGG - Chr3:102998784-102998803 MsG0380017995.01.T01:five_prime_UTR 50.0%
GTTCAGTTGACCGTAACCAG+GGG - Chr3:102994558-102994577 MsG0380017995.01.T01:intron 50.0%
TCGGTGGGACCAAAAGTAAC+GGG + Chr3:102994390-102994409 None:intergenic 50.0%
TGGAAAAGACAGGAGAAGGG+AGG - Chr3:102997181-102997200 MsG0380017995.01.T01:intron 50.0%
TGGATCAGTCAAGACTTGGG+AGG - Chr3:102999095-102999114 MsG0380017995.01.T03:intron 50.0%
! TATGGGCATTTGGAGGGCAT+AGG - Chr3:102998759-102998778 MsG0380017995.01.T01:five_prime_UTR 50.0%
! TTCTAGCATGTGGCTTGCCT+CGG - Chr3:102998521-102998540 MsG0380017995.01.T01:intron 50.0%
!! CCACTCCTTGTAGGGTATTG+TGG - Chr3:102998839-102998858 MsG0380017995.01.T01:five_prime_UTR 50.0%
!! TGGTAGGAGTGTTCTCACTC+TGG + Chr3:102998358-102998377 None:intergenic 50.0%
ACAAGGAGTGGCCCAGACAA+AGG + Chr3:102998830-102998849 None:intergenic 55.0%
CAAGGATTCGCCCCTGGTTA+CGG + Chr3:102994571-102994590 None:intergenic 55.0%
CACACGAGTGTCCCACAATC+TGG + Chr3:102995951-102995970 None:intergenic 55.0%
CAGATTGTGGGACACTCGTG+TGG - Chr3:102995949-102995968 MsG0380017995.01.T01:intron 55.0%
CCCCAGTTCACTGTGGTATG+AGG + Chr3:102996315-102996334 None:intergenic 55.0%
CGATGCGACTGCCAGATTGT+GGG - Chr3:102995937-102995956 MsG0380017995.01.T01:intron 55.0%
GAGGGCAGGATCACCTGTTT+GGG - Chr3:102997515-102997534 MsG0380017995.01.T01:five_prime_UTR 55.0%
GCAGAGACAGATGGAGGAAG+TGG - Chr3:102993949-102993968 MsG0380017995.01.T01:three_prime_UTR 55.0%
GGATGAACGCCTGGATGCAT+TGG + Chr3:102998212-102998231 None:intergenic 55.0%
GGTCAATCTGTTGCATGCGG+TGG - Chr3:102995506-102995525 MsG0380017995.01.T01:CDS 55.0%
GTGTGGCAAGTCGAGCAGTA+CGG - Chr3:102995966-102995985 MsG0380017995.01.T01:intron 55.0%
TACATCCGAGGATGAACGCC+TGG + Chr3:102998221-102998240 None:intergenic 55.0%
TGAGGGCAGGATCACCTGTT+TGG - Chr3:102997514-102997533 MsG0380017995.01.T01:five_prime_UTR 55.0%
TGCATCCAGGCGTTCATCCT+CGG - Chr3:102998213-102998232 MsG0380017995.01.T01:intron 55.0%
TGTCTGGGCCACTCCTTGTA+GGG - Chr3:102998831-102998850 MsG0380017995.01.T01:five_prime_UTR 55.0%
TTGTCTGGGCCACTCCTTGT+AGG - Chr3:102998830-102998849 MsG0380017995.01.T01:five_prime_UTR 55.0%
! GGCATTTGGAGGGCATAGGA+AGG - Chr3:102998763-102998782 MsG0380017995.01.T01:five_prime_UTR 55.0%
GACAGATGGAGGAAGTGGCC+CGG - Chr3:102993954-102993973 MsG0380017995.01.T01:three_prime_UTR 60.0%
GCGATGCGACTGCCAGATTG+TGG - Chr3:102995936-102995955 MsG0380017995.01.T01:intron 60.0%
GCTACACAAGGATTCGCCCC+TGG + Chr3:102994577-102994596 None:intergenic 60.0%
ACGGTCAGCGGCGAAGCTAG+AGG + Chr3:102995054-102995073 None:intergenic 65.0%
AGATGGAGGAAGTGGCCCGG+CGG - Chr3:102993957-102993976 MsG0380017995.01.T01:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 102993768 102999237 102993768 ID=MsG0380017995.01;Name=MsG0380017995.01
Chr3 mRNA 102993768 102998973 102993768 ID=MsG0380017995.01.T01;Parent=MsG0380017995.01;Name=MsG0380017995.01.T01;_AED=0.40;_eAED=0.41;_QI=786|0.5|0.71|1|0.33|0.28|7|444|196
Chr3 exon 102995368 102995525 102995368 ID=MsG0380017995.01.T01:exon:3113;Parent=MsG0380017995.01.T01
Chr3 exon 102995792 102995855 102995792 ID=MsG0380017995.01.T01:exon:3112;Parent=MsG0380017995.01.T01
Chr3 exon 102998732 102998973 102998732 ID=MsG0380017995.01.T01:exon:3108;Parent=MsG0380017995.01.T01
Chr3 five_prime_UTR 102998732 102998973 102998732 ID=MsG0380017995.01.T01:five_prime_utr;Parent=MsG0380017995.01.T01
Chr3 five_prime_UTR 102998556 102998650 102998556 ID=MsG0380017995.01.T01:five_prime_utr;Parent=MsG0380017995.01.T01
Chr3 five_prime_UTR 102997231 102997652 102997231 ID=MsG0380017995.01.T01:five_prime_utr;Parent=MsG0380017995.01.T01
Chr3 five_prime_UTR 102997089 102997115 102997089 ID=MsG0380017995.01.T01:five_prime_utr;Parent=MsG0380017995.01.T01
Chr3 CDS 102996756 102997088 102996756 ID=MsG0380017995.01.T01:cds;Parent=MsG0380017995.01.T01
Chr3 CDS 102995792 102995855 102995792 ID=MsG0380017995.01.T01:cds;Parent=MsG0380017995.01.T01
Chr3 CDS 102995368 102995525 102995368 ID=MsG0380017995.01.T01:cds;Parent=MsG0380017995.01.T01
Chr3 CDS 102994212 102994247 102994212 ID=MsG0380017995.01.T01:cds;Parent=MsG0380017995.01.T01
Chr3 three_prime_UTR 102993768 102994211 102993768 ID=MsG0380017995.01.T01:three_prime_utr;Parent=MsG0380017995.01.T01
Chr3 mRNA 102993768 102999237 102993768 ID=MsG0380017995.01.T02;Parent=MsG0380017995.01;Name=MsG0380017995.01.T02;_AED=0.41;_eAED=0.41;_QI=0|0.83|0.71|0.85|0.33|0.28|7|1138|171
Chr3 exon 102995413 102995525 102995413 ID=MsG0380017995.01.T02:exon:3117;Parent=MsG0380017995.01.T02
Chr3 CDS 102999231 102999237 102999231 ID=MsG0380017995.01.T02:cds;Parent=MsG0380017995.01.T02
Chr3 CDS 102998732 102998908 102998732 ID=MsG0380017995.01.T02:cds;Parent=MsG0380017995.01.T02
Chr3 CDS 102998556 102998650 102998556 ID=MsG0380017995.01.T02:cds;Parent=MsG0380017995.01.T02
Chr3 CDS 102997416 102997652 102997416 ID=MsG0380017995.01.T02:cds;Parent=MsG0380017995.01.T02
Chr3 three_prime_UTR 102997231 102997415 102997231 ID=MsG0380017995.01.T02:three_prime_utr;Parent=MsG0380017995.01.T02
Chr3 three_prime_UTR 102996756 102997115 102996756 ID=MsG0380017995.01.T02:three_prime_utr;Parent=MsG0380017995.01.T02
Chr3 three_prime_UTR 102995413 102995525 102995413 ID=MsG0380017995.01.T02:three_prime_utr;Parent=MsG0380017995.01.T02
Chr3 three_prime_UTR 102993768 102994247 102993768 ID=MsG0380017995.01.T02:three_prime_utr;Parent=MsG0380017995.01.T02
Chr3 mRNA 102993768 102999237 102993768 ID=MsG0380017995.01.T03;Parent=MsG0380017995.01;Name=MsG0380017995.01.T03;_AED=0.34;_eAED=0.34;_QI=0|0.8|0.66|0.83|0.4|0.33|6|2368|171
Chr3 exon 102995413 102997115 102995413 ID=MsG0380017995.01.T03:exon:3118;Parent=MsG0380017995.01.T03
Chr3 CDS 102999231 102999237 102999231 ID=MsG0380017995.01.T03:cds;Parent=MsG0380017995.01.T03
Chr3 CDS 102998732 102998908 102998732 ID=MsG0380017995.01.T03:cds;Parent=MsG0380017995.01.T03
Chr3 CDS 102998556 102998650 102998556 ID=MsG0380017995.01.T03:cds;Parent=MsG0380017995.01.T03
Chr3 CDS 102997416 102997652 102997416 ID=MsG0380017995.01.T03:cds;Parent=MsG0380017995.01.T03
Chr3 three_prime_UTR 102997231 102997415 102997231 ID=MsG0380017995.01.T03:three_prime_utr;Parent=MsG0380017995.01.T03
Chr3 three_prime_UTR 102995413 102997115 102995413 ID=MsG0380017995.01.T03:three_prime_utr;Parent=MsG0380017995.01.T03
Chr3 three_prime_UTR 102993768 102994247 102993768 ID=MsG0380017995.01.T03:three_prime_utr;Parent=MsG0380017995.01.T03
Gene Sequence

>MsG0380017995.01.T03

ATGAATGGTCGTGGTTATCGTCCTTTTCTCTTCATTCTTCAGAATTTGAATGAATCAGTGAAGGAAGACCTAAAAAAAAAGTCAGTTACGGAGCTGAAAGAACGTCACATAGCTGCAACGGAAACCGTCAACAATCTCAGAGAACGTTTGAAGCAAAGACGCCTCTCTCTTCTTGATACAGATATTGCTGGTTATGCAAAGTCTCAAGGTAGAACTCCCGTTACTTTTGGTCCCACCGATATCCTTTGCTGTAGAACTCTCCAAGGTCATACTGGAAAGGTTTACTCATTGGATTGGACTTCAGAAAAGAATCGAATTGTTAGTGCATCTCAAGATGGAAGATTAATAGTATGGAATGCTCTAACAAGCCAGAAAACTCATGCTATAAAGCTTCCTTGTGCATGGGTTATGACATGTGCTTTCTCCCCAACTGGTCAATCTGTTGCATGCGGTGGCCTTGACAGTGTTTGTTCTATTTTCAATCTTAATTCACCCACTGATAGGATGGGAATCTAA

>MsG0380017995.01.T01

ATGTTTGTATCTGGTTCTTGCGATGCGACTGCCAGATTGTGGGACACTCGTGTGGCAAGTCGAGCAGTACGGACATTTCATGGGCATGAGGGTGATGTTAATTCTGTCAAATTCTTTCCTGATGGAAATAGATTTGGAACTGGCTCAGAAGATGGAACTTGCAGATTGTTTGACATTAGGACTGGACACCAACTTCAAGTATATAATCAGCAACACAGCAGTGACAACGAAATGGCACATGTGACCTCCATTGCATTCTCCATATCCGGAAGACTTCTTATTGCTGGATATACAAATGGCGATTGCTATGTTTGGGATACTTTATTGGCTAAGGTTTATCTTCTGGTTGAGATTTTTCTTATTTTGGAAAAGACAGGAGAAGGGAGGCTGAAAAAGAGTGGTCCTGAATCTAGGATCTCTTCAAACTCTCATGAGGGCAGGATCACCTGTTTGGGTTTGTCTGCTGATGGAAGTGCTTTGTGTACAGGAAGTTGGGACACAAATTTAAAGGTGAGCAAACATTTTAGTCTGATACATAAAACTTATAGGTTATGTATATGGGCATTTGGAGGGCATAGGAAGGTGATTTGA

>MsG0380017995.01.T02

ATGAATGGTCGTGGTTATCGTCCTTTTCTCTTCATTCTTCAGAATTTGAATGAATCAGTGAAGGAAGACCTAAAAAAAAAGTCAGTTACGGAGCTGAAAGAACGTCACATAGCTGCAACGGAAACCGTCAACAATCTCAGAGAACGTTTGAAGCAAAGACGCCTCTCTCTTCTTGATACAGATATTGCTGGTTATGCAAAGTCTCAAGGTAGAACTCCCGTTACTTTTGGTCCCACCGATATCCTTTGCTGTAGAACTCTCCAAGGTCATACTGGAAAGGTTTACTCATTGGATTGGACTTCAGAAAAGAATCGAATTGTTAGTGCATCTCAAGATGGAAGATTAATAGTATGGAATGCTCTAACAAGCCAGAAAACTCATGCTATAAAGCTTCCTTGTGCATGGGTTATGACATGTGCTTTCTCCCCAACTGGTCAATCTGTTGCATGCGGTGGCCTTGACAGTGTTTGTTCTATTTTCAATCTTAATTCACCCACTGATAGGATGGGAATCTAA
Protein sequence

>MsG0380017995.01.T03

MNGRGYRPFLFILQNLNESVKEDLKKKSVTELKERHIAATETVNNLRERLKQRRLSLLDTDIAGYAKSQGRTPVTFGPTDILCCRTLQGHTGKVYSLDWTSEKNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDRMGI*

>MsG0380017995.01.T01

MFVSGSCDATARLWDTRVASRAVRTFHGHEGDVNSVKFFPDGNRFGTGSEDGTCRLFDIRTGHQLQVYNQQHSSDNEMAHVTSIAFSISGRLLIAGYTNGDCYVWDTLLAKVYLLVEIFLILEKTGEGRLKKSGPESRISSNSHEGRITCLGLSADGSALCTGSWDTNLKVSKHFSLIHKTYRLCIWAFGGHRKVI*

>MsG0380017995.01.T02

MNGRGYRPFLFILQNLNESVKEDLKKKSVTELKERHIAATETVNNLRERLKQRRLSLLDTDIAGYAKSQGRTPVTFGPTDILCCRTLQGHTGKVYSLDWTSEKNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDRMGI*