AlfalfaGEDB | MsG0880047627.01

M. sativa cultivar ZhongmuNo.1 / MsG0880047627.01

KEGG: -
GO: GO:0003676 GO:0005524
PFAM: PF00270 PF00271

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880047627.01.T01	XP_039689892.1	91.429	490	27	4	1	485	1	480	0	875

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880047627.01.T01	Q3E9C3	62.19	484	170	4	1	484	1	471	0	617

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880047627.01.T01	B7FL50	91.429	490	27	4	1	485	1	480	0.0	875

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047831.01	MsG0880047627.01	-0.806019	1.007708e-49	5.411630e-47
MsG0080048059.01	MsG0880047627.01	0.849225	3.705986e-60	6.978646e-57
MsG0080048202.01	MsG0880047627.01	-0.858330	8.871791e-63	2.255952e-59
MsG0080048274.01	MsG0880047627.01	0.813177	2.920448e-51	1.893540e-48
MsG0080048528.01	MsG0880047627.01	0.802472	5.519857e-49	2.706263e-46
MsG0080048595.01	MsG0880047627.01	-0.808104	3.648521e-50	2.067877e-47
MsG0080048776.01	MsG0880047627.01	0.866150	3.518623e-65	1.173958e-61
MsG0080048887.01	MsG0880047627.01	0.865518	5.572562e-65	1.818243e-61
MsG0080048889.01	MsG0880047627.01	-0.812343	4.446025e-51	2.819777e-48
MsG0080048896.01	MsG0880047627.01	0.862251	5.785737e-64	1.683381e-60

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PPI

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Gene1	Gene2	Type
MsG0280006772.01	MsG0880047627.01	PPI
MsG0380014635.01	MsG0880047627.01	PPI
MsG0380017995.01	MsG0880047627.01	PPI
MsG0580025493.01	MsG0880047627.01	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880047627.01.T01	MTR_4g131750	91.429	490	27	4	1	485	1	480	0.0	875
MsG0880047627.01.T01	MTR_2g063080	26.104	498	279	12	35	476	61	525	2.15e-35	139
MsG0880047627.01.T01	MTR_3g083690	31.514	403	214	15	74	447	128	497	1.09e-34	137
MsG0880047627.01.T01	MTR_4g105100	29.301	372	228	9	82	447	197	539	2.29e-32	130
MsG0880047627.01.T01	MTR_2g100230	27.338	417	250	11	79	476	88	470	4.65e-32	129
MsG0880047627.01.T01	MTR_1g054630	30.052	386	221	12	82	447	149	505	2.95e-31	127
MsG0880047627.01.T01	MTR_4g114120	29.177	401	218	15	77	447	130	494	4.59e-30	124
MsG0880047627.01.T01	MTR_7g056830	28.649	370	231	11	93	459	16	355	4.68e-29	119
MsG0880047627.01.T01	MTR_2g032630	29.288	379	218	8	94	459	503	844	5.99e-29	121
MsG0880047627.01.T01	MTR_6g082080	28.378	370	232	11	93	459	16	355	9.10e-29	118

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880047627.01.T01	AT5G19210	62.190	484	170	4	1	484	1	471	0.0	617
MsG0880047627.01.T01	AT5G19210	70.032	317	92	1	168	484	1	314	1.11e-169	481
MsG0880047627.01.T01	AT5G19210	70.032	317	92	1	168	484	1	314	1.11e-169	481
MsG0880047627.01.T01	AT1G12770	26.608	451	246	13	93	484	117	541	8.51e-35	137
MsG0880047627.01.T01	AT1G12770	26.608	451	246	13	93	484	117	541	8.51e-35	137
MsG0880047627.01.T01	AT5G63120	28.800	375	232	10	79	447	158	503	4.31e-33	132
MsG0880047627.01.T01	AT3G58570	30.370	405	225	12	82	458	142	517	2.77e-31	127
MsG0880047627.01.T01	AT3G58510	30.500	400	219	12	74	447	135	501	3.60e-31	127
MsG0880047627.01.T01	AT3G58510	30.500	400	219	12	74	447	135	501	3.60e-31	127
MsG0880047627.01.T01	AT3G58510	30.500	400	219	12	74	447	135	501	3.60e-31	127

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Find 118 sgRNAs with CRISPR-Local

Find 569 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCCAACAGGAGTTGAAG+GGG	0.645317	8:+88910775	MsG0880047627.01.T01:CDS
AAAGTCAATCACAAGGGACG+TGG	0.566234	8:-88913458	None:intergenic
AAAGTTGTCTTTCAAGCATT+TGG	0.274712	8:-88911670	None:intergenic
AACAAATATAATGCCGGACT+TGG	0.412449	8:-88912798	None:intergenic
AAGGCACAAGAGTTGGTTTA+AGG	0.253619	8:+88910847	MsG0880047627.01.T01:CDS
AATATGAGGTCAAAATCTTC+CGG	0.442699	8:-88912240	None:intergenic
AATATGTGAAGGTCTAGGTG+AGG	0.663605	8:-88914406	None:intergenic
AATCTATGAGATAGACGAGA+CGG	0.648321	8:-88912501	None:intergenic
AATGCCGGACTTGGGAGCAT+CGG	0.546783	8:-88912789	None:intergenic
AATGTTAGCGGAGAAGGAGG+AGG	0.546395	8:-88907807	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGTTGTCTTTCAAGCATT+TGG	-	Chr8:88911673-88911692	None:intergenic	30.0%
AAATACACAAAACACACACA+AGG	-	Chr8:88911420-88911439	None:intergenic	30.0%
AAATTTACTAATGCCCAACA+TGG	-	Chr8:88912691-88912710	None:intergenic	30.0%
AACCATTCTATATCTTTCCA+AGG	-	Chr8:88912644-88912663	None:intergenic	30.0%
AAGGGAACTAAAAAAGAAGT+TGG	-	Chr8:88912131-88912150	None:intergenic	30.0%
AATATGAGGTCAAAATCTTC+CGG	-	Chr8:88912243-88912262	None:intergenic	30.0%
AATGGCAAAATGAATTTGGA+TGG	-	Chr8:88913659-88913678	None:intergenic	30.0%
AATTTACTAATGCCCAACAT+GGG	-	Chr8:88912690-88912709	None:intergenic	30.0%
AGAGATATGAAAATGAGTTG+AGG	+	Chr8:88914355-88914374	MsG0880047627.01.T01:CDS	30.0%
AGGGAACTAAAAAAGAAGTT+GGG	-	Chr8:88912130-88912149	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	88907656	88914597	88907656	ID=MsG0880047627.01;Name=MsG0880047627.01
Chr8	mRNA	88907656	88914597	88907656	ID=MsG0880047627.01.T01;Parent=MsG0880047627.01;Name=MsG0880047627.01.T01;_AED=0.40;_eAED=0.40;_QI=21\|1\|1\|1\|0.55\|0.6\|10\|193\|485
Chr8	exon	88907656	88907975	88907656	ID=MsG0880047627.01.T01:exon:2342;Parent=MsG0880047627.01.T01
Chr8	exon	88908088	88908181	88908088	ID=MsG0880047627.01.T01:exon:2343;Parent=MsG0880047627.01.T01
Chr8	exon	88910509	88910622	88910509	ID=MsG0880047627.01.T01:exon:2344;Parent=MsG0880047627.01.T01
Chr8	exon	88910746	88910868	88910746	ID=MsG0880047627.01.T01:exon:2345;Parent=MsG0880047627.01.T01
Chr8	exon	88911626	88911730	88911626	ID=MsG0880047627.01.T01:exon:2346;Parent=MsG0880047627.01.T01
Chr8	exon	88912199	88912357	88912199	ID=MsG0880047627.01.T01:exon:2347;Parent=MsG0880047627.01.T01
Chr8	exon	88912459	88912527	88912459	ID=MsG0880047627.01.T01:exon:2348;Parent=MsG0880047627.01.T01
Chr8	exon	88912740	88912829	88912740	ID=MsG0880047627.01.T01:exon:2349;Parent=MsG0880047627.01.T01
Chr8	exon	88913424	88913564	88913424	ID=MsG0880047627.01.T01:exon:2350;Parent=MsG0880047627.01.T01
Chr8	exon	88914141	88914597	88914141	ID=MsG0880047627.01.T01:exon:2351;Parent=MsG0880047627.01.T01
Chr8	five_prime_UTR	88907656	88907676	88907656	ID=MsG0880047627.01.T01:five_prime_utr;Parent=MsG0880047627.01.T01
Chr8	CDS	88907677	88907975	88907677	ID=MsG0880047627.01.T01:cds;Parent=MsG0880047627.01.T01
Chr8	CDS	88908088	88908181	88908088	ID=MsG0880047627.01.T01:cds;Parent=MsG0880047627.01.T01
Chr8	CDS	88910509	88910622	88910509	ID=MsG0880047627.01.T01:cds;Parent=MsG0880047627.01.T01
Chr8	CDS	88910746	88910868	88910746	ID=MsG0880047627.01.T01:cds;Parent=MsG0880047627.01.T01
Chr8	CDS	88911626	88911730	88911626	ID=MsG0880047627.01.T01:cds;Parent=MsG0880047627.01.T01
Chr8	CDS	88912199	88912357	88912199	ID=MsG0880047627.01.T01:cds;Parent=MsG0880047627.01.T01
Chr8	CDS	88912459	88912527	88912459	ID=MsG0880047627.01.T01:cds;Parent=MsG0880047627.01.T01
Chr8	CDS	88912740	88912829	88912740	ID=MsG0880047627.01.T01:cds;Parent=MsG0880047627.01.T01
Chr8	CDS	88913424	88913564	88913424	ID=MsG0880047627.01.T01:cds;Parent=MsG0880047627.01.T01
Chr8	CDS	88914141	88914404	88914141	ID=MsG0880047627.01.T01:cds;Parent=MsG0880047627.01.T01
Chr8	three_prime_UTR	88914405	88914597	88914405	ID=MsG0880047627.01.T01:three_prime_utr;Parent=MsG0880047627.01.T01

Gene Sequence

>MsG0880047627.01.T01

ATGGACAGTCGAACTCTATCAGTCTCACATCTTCTTCTTCCTCTTCGTTTTCTTTCTTCATCTCAAAACCCAACTTCTTATTCTTCTTCATACAACAACAACAACAACAACAATTTTGTGAAACTATTATCCTCCTCCTTCTCCGCTAACATTAACCATCACCGTGTCACAACAACAACAACTCCACTAGCCATTGCCAATCCTACTTCTCCTACTACCGAAGATGATACAGTTCGAACAACTCCCACCACTCTCAGACAATTATGTCAATATCATGTTCCCGACCAATTACTCCAAAGGATGGAAGAGGTTGGATATGTCATGCCTACACCGGTCCAGAAACAAGCTTTGCCTCATCTTTTTTCTGGCCGTGACTGCATACTTCATGCTCAGACAGGTTCTGGGAAGACACTTGCATACTTGCTTTTGATCTATTCCATTATTAACACAAGAAAATCTTCTTTTCAAGCACTAGTTTTGGTGCCCACCCGTGAACTTGGCATGCAAGTTACCAAGGTTGCTAGGATACTGGCGGCAAAGCCAACAGGAGTTGAAGGGGAGCAAAGATCATGTACCATCATGGCTCTGTTAGATGGAGGAACATTGAGAAGGCACAAGAGTTGGTTTAAGGCTGAGCCTCCAGCAATAGTAGTTGCAACAGTTGAGAGTTTGTGCCAAATGCTTGAAAGACAACTTTTTTCGCTTGGAACCTTGCGGGTGTTGGTTGTTGATGAGGTTGACTTCATTTTCAATTCTTCAAAGCAAGTGAGTTCTCTCCGGAAGATTTTGACCTCATATTCGTCTTGTAATAACCGTCAGACAGTTTTTGCCAGTGCATCTATACCACAGCACAATCGATTTCTTAACGAAGCTGTGCAGCAGAAATGGACTAAGAGGGATGTGATCCATATTCACGTTAGTCCGGTGGAGCCCATGCCGTCTCGTCTATCTCATAGATTTATAGTATGTGATATAAAAAGAAAACTACAAACCCTGTTATCCTTGATACAATCCGATGCTCCCAAGTCCGGCATTATATTTGTTAGTGAGCAGTCTGAGAAGTCGAAAAAGGCTGGTAATTCTCCATCCACGTCCCTTGTGATTGACTTTCTAAAAACATCATATCATGGTTCTTTAGATATCCTCCTCCTCGAAGATGACATGAATTTCAATTCACGAGCAGCTTCTCTGTTGGAGGTTAGGAAAGGTGGCGGCTATCTTCTAGTAGCAACAGATGTAGCAGCTAGAGGAGTTGACCTTCCAGAAATGACTCACATATACAACTTTGATCTGCCAAAAACTGCCATAGATTATCTTCATCGAGCAGGGAGGACCTGTAGGAAACCCTTTTCTGATGTGAATTGTACTGTCACCAGCATTATAGTCTCGCAGGAGCGGTTTGTTCTGCAGAGATATGAAAATGAGTTGAGGTTTGTCTGTACAGAGCTTATTCCATAA

Protein sequence

>MsG0880047627.01.T01

MDSRTLSVSHLLLPLRFLSSSQNPTSYSSSYNNNNNNNFVKLLSSSFSANINHHRVTTTTTPLAIANPTSPTTEDDTVRTTPTTLRQLCQYHVPDQLLQRMEEVGYVMPTPVQKQALPHLFSGRDCILHAQTGSGKTLAYLLLIYSIINTRKSSFQALVLVPTRELGMQVTKVARILAAKPTGVEGEQRSCTIMALLDGGTLRRHKSWFKAEPPAIVVATVESLCQMLERQLFSLGTLRVLVVDEVDFIFNSSKQVSSLRKILTSYSSCNNRQTVFASASIPQHNRFLNEAVQQKWTKRDVIHIHVSPVEPMPSRLSHRFIVCDIKRKLQTLLSLIQSDAPKSGIIFVSEQSEKSKKAGNSPSTSLVIDFLKTSYHGSLDILLLEDDMNFNSRAASLLEVRKGGGYLLVATDVAARGVDLPEMTHIYNFDLPKTAIDYLHRAGRTCRKPFSDVNCTVTSIIVSQERFVLQRYENELRFVCTELIP*