AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480018396.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018396.01.T01 MTR_4g011180 97.581 248 6 0 1 248 1 248 1.98e-179 493
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018396.01.T01 AT2G43090 71.616 229 55 4 26 247 23 248 4.50e-105 305
MsG0480018396.01.T01 AT2G43100 58.687 259 90 6 1 247 1 254 5.22e-95 279
MsG0480018396.01.T01 AT3G58990 60.400 250 84 4 3 247 13 252 5.40e-94 276
MsG0480018396.01.T01 AT2G43090 58.952 229 55 5 26 247 23 219 1.94e-78 236

Find 120 sgRNAs with CRISPR-Local

Find 377 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAAACCACTGCACAACTTT+TGG 0.191492 4:-4326776 None:intergenic
GACTGTGTCAACAGTTATTT+TGG 0.191911 4:-4327072 None:intergenic
TTAGATGTCCAAATGCTTCT+AGG 0.223781 4:+4326509 MsG0480018396.01.T01:three_prime_UTR
TAAGGATGAGTTATGTAATT+TGG 0.237954 4:+4326314 MsG0480018396.01.T01:three_prime_UTR
CAAAAGTTGTGCAGTGGTTT+TGG 0.243460 4:+4326777 MsG0480018396.01.T01:three_prime_UTR
AATTGGCAGTCAAGTTTCTT+TGG 0.254616 4:-4326830 None:intergenic
TATTTAATATTAGGTGCTTC+TGG 0.297737 4:+4322255 MsG0480018396.01.T01:intron
TAAATTTCTTGACAATATTT+CGG 0.301207 4:+4327122 MsG0480018396.01.T01:three_prime_UTR
AGAGAGTGAGAGTTTGTTAG+AGG 0.307987 4:-4320982 None:intergenic
TGTTAGAGGGAGTGAAGGTT+AGG 0.318499 4:-4320968 None:intergenic
CTGTCAAGTGTCAATGTCTA+TGG 0.332394 4:+4327021 MsG0480018396.01.T01:three_prime_UTR
CCCAAGAGCCTTAGCTCAAT+TGG 0.337183 4:-4326847 None:intergenic
CACGGTCTCTGCTACGTTGT+TGG 0.348960 4:+4321143 MsG0480018396.01.T01:CDS
ATCATCGGTGGTGCTAATTT+CGG 0.350557 4:+4321332 MsG0480018396.01.T01:CDS
CGAATCAGGAAGTCCGATTA+AGG 0.352628 4:-4321258 None:intergenic
CACCAGTTGCCACCGAGTTC+CGG 0.373136 4:-4322320 None:intergenic
GCTAAGGCTCTTGGGAATAC+TGG 0.377661 4:+4326855 MsG0480018396.01.T01:three_prime_UTR
AAGGAGTTGGATTGAAATGA+AGG 0.389865 4:-4321035 None:intergenic
TTCCGGAACTCGGTGGCAAC+TGG 0.390342 4:+4322318 MsG0480018396.01.T01:CDS
GGAGTGAAGGTTAGGGTTTG+TGG 0.392555 4:-4320960 None:intergenic
ACATGCAGCAGTAGATGCTT+TGG 0.393799 4:+4326224 MsG0480018396.01.T01:intron
TGACGGGAGAAGGTGGCGCT+TGG 0.397446 4:-4321097 None:intergenic
TCTATGTTCCTAGAAGCATT+TGG 0.399646 4:-4326517 None:intergenic
TATTGTCAAGAAATTTACTT+TGG 0.400901 4:-4327116 None:intergenic
AGTATCAGTTGAAGCCGATT+GGG 0.403012 4:+4322454 MsG0480018396.01.T01:CDS
GAACACGCTCCGGTCGCATT+AGG 0.405877 4:+4321371 MsG0480018396.01.T01:CDS
ATCCCACCGGCCTCAATCAC+TGG 0.411113 4:-4322486 None:intergenic
GCCAATTGAGCTAAGGCTCT+TGG 0.414213 4:+4326846 MsG0480018396.01.T01:three_prime_UTR
GTTAGAGGGAGTGAAGGTTA+GGG 0.414545 4:-4320967 None:intergenic
TTTAGGAATATATAATGTTA+AGG 0.419931 4:+4326356 MsG0480018396.01.T01:three_prime_UTR
GACGGGAGAAGGTGGCGCTT+GGG 0.433110 4:-4321096 None:intergenic
GCTTGAAGCTTAATGCTACT+TGG 0.433579 4:-4326802 None:intergenic
CCAATTGAGCTAAGGCTCTT+GGG 0.435871 4:+4326847 MsG0480018396.01.T01:three_prime_UTR
TGAATGGAATCCGTGAAAAC+AGG 0.437480 4:-4326267 None:intergenic
GCGGTGGTGGTGACGGGAGA+AGG 0.443330 4:-4321107 None:intergenic
CACTGCACTAAGCACATTTG+TGG 0.445826 4:+4326572 MsG0480018396.01.T01:three_prime_UTR
AATCGTACAGTGTACGAATC+AGG 0.446981 4:-4321272 None:intergenic
CTAGTCATGCAGCTTTGTTA+AGG 0.450759 4:+4326296 MsG0480018396.01.T01:three_prime_UTR
CCAAGCTTCTGATACTCATC+AGG 0.459176 4:-4321227 None:intergenic
AAAACCTGCTTTAAATCAAT+CGG 0.460625 4:+4326701 MsG0480018396.01.T01:three_prime_UTR
TAGTGGAGAGGTGGTGGTGA+TGG 0.462972 4:-4321063 None:intergenic
TTCTGGTGCTGCTGCTGTTG+TGG 0.463567 4:+4322272 MsG0480018396.01.T01:CDS
CGGTTGAGCTTGAGGAGAAT+CGG 0.466189 4:+4322406 MsG0480018396.01.T01:CDS
TTGAAGCCGATTGGGGATGC+TGG 0.468277 4:+4322462 MsG0480018396.01.T01:CDS
GAGTTTGTTAGAGGGAGTGA+AGG 0.468716 4:-4320973 None:intergenic
CATGCAGCAGTAGATGCTTT+GGG 0.471995 4:+4326225 MsG0480018396.01.T01:intron
GATGCGGCGGTGGTGGTGAC+GGG 0.472062 4:-4321113 None:intergenic
ATCAGGATTGGAAGGGACTA+AGG 0.474009 4:-4321210 None:intergenic
ATCTTCTCGTGAACACGCTC+CGG 0.476907 4:+4321361 MsG0480018396.01.T01:CDS
TATTAGAACATTTGAAACTT+CGG 0.479915 4:+4326383 MsG0480018396.01.T01:three_prime_UTR
GGAACATAGAAGTGCATGCT+TGG 0.481726 4:+4326530 MsG0480018396.01.T01:three_prime_UTR
ACTAAGGTAAGATGCTCAGC+AGG 0.482246 4:-4321194 None:intergenic
TTTGCTTATGCTAGGAAGAC+TGG 0.483245 4:+4322510 MsG0480018396.01.T01:CDS
GTATCACTATGAATAACCTT+TGG 0.486386 4:+4326995 MsG0480018396.01.T01:three_prime_UTR
AAAATACGAACTTTAAATCT+GGG 0.492049 4:-4326619 None:intergenic
GAGAGTGAGAGTTTGTTAGA+GGG 0.494890 4:-4320981 None:intergenic
TGATGCGGCGGTGGTGGTGA+CGG 0.505732 4:-4321114 None:intergenic
CTCAACCGTCACCACATCTC+CGG 0.514229 4:-4322391 None:intergenic
GAAGGTTAGGGTTTGTGGAA+TGG 0.515743 4:-4320955 None:intergenic
GAGTATCAGTTGAAGCCGAT+TGG 0.521430 4:+4322453 MsG0480018396.01.T01:CDS
CTTCTGATACTCATCAGGAT+TGG 0.522070 4:-4321222 None:intergenic
ATTAGAAAGAAAATGAGAAG+TGG 0.523245 4:+4326887 MsG0480018396.01.T01:three_prime_UTR
GCTTGGGCGCGTGTGATTAG+TGG 0.530620 4:-4321080 None:intergenic
TGGCCATCCGATTAAAAGAT+CGG 0.530876 4:+4326592 MsG0480018396.01.T01:three_prime_UTR
CTTGAAGCTTAATGCTACTT+GGG 0.531955 4:-4326801 None:intergenic
TGATACTCATCAGGATTGGA+AGG 0.533166 4:-4321218 None:intergenic
CCTGATGAGTATCAGAAGCT+TGG 0.534753 4:+4321227 MsG0480018396.01.T01:CDS
TTAACCATTGGCATCTGTCA+AGG 0.536741 4:+4326936 MsG0480018396.01.T01:three_prime_UTR
GATACATCAATATTAACCAT+TGG 0.537680 4:+4326924 MsG0480018396.01.T01:three_prime_UTR
GTGGGATCTTTGCTTATGCT+AGG 0.542146 4:+4322502 MsG0480018396.01.T01:CDS
CGGTTGATTAATCATACGAC+TGG 0.545585 4:+4322426 MsG0480018396.01.T01:CDS
CCGTCCGATTGATTTAAAGC+AGG 0.546420 4:-4326705 None:intergenic
ACTGTACGATTCGTTGAATC+CGG 0.547314 4:+4321284 MsG0480018396.01.T01:CDS
AAAAGATGATGCGGCGGTGG+TGG 0.548672 4:-4321120 None:intergenic
TTGTGTGAGGAGTGTCGTAC+CGG 0.548705 4:+4322372 MsG0480018396.01.T01:CDS
GTGGTGGTGACGGGAGAAGG+TGG 0.552121 4:-4321104 None:intergenic
GTCCAGTGATTGAGGCCGGT+GGG 0.555857 4:+4322484 MsG0480018396.01.T01:CDS
AGAAGTGGAAGAATTCTACT+TGG 0.556023 4:+4326902 MsG0480018396.01.T01:three_prime_UTR
ACGAAATACTCTATCATCAT+CGG 0.558429 4:+4321317 MsG0480018396.01.T01:CDS
ACTGGACCAGCATCCCCAAT+CGG 0.559242 4:-4322468 None:intergenic
AACACAATACCTCATCTAGT+AGG 0.560121 4:-4322540 None:intergenic
TATCAAATACCTAATGCGAC+CGG 0.561510 4:-4321380 None:intergenic
GAATAGTTTAGTACAACAGT+AGG 0.561835 4:-4327094 None:intergenic
GCATGACTAGAGCATCTGAA+TGG 0.561901 4:-4326283 None:intergenic
GCTGGTCCAGTGATTGAGGC+CGG 0.577782 4:+4322480 MsG0480018396.01.T01:CDS
TGTGATTAGTGGAGAGGTGG+TGG 0.579586 4:-4321069 None:intergenic
GGTCCAGTGATTGAGGCCGG+TGG 0.580133 4:+4322483 MsG0480018396.01.T01:CDS
GTGAAAAGATGATGCGGCGG+TGG 0.581151 4:-4321123 None:intergenic
GGTGGTGCTAATTTCGGATG+CGG 0.581372 4:+4321338 MsG0480018396.01.T01:CDS
TGGTGCTGCTGCTGTTGTGG+CGG 0.582109 4:+4322275 MsG0480018396.01.T01:CDS
CTTGACTGCCAATTGAGCTA+AGG 0.586201 4:+4326839 MsG0480018396.01.T01:three_prime_UTR
GGATGCTGGTCCAGTGATTG+AGG 0.586798 4:+4322476 MsG0480018396.01.T01:CDS
GAACTCGGTGGCAACTGGTG+AGG 0.590499 4:+4322323 MsG0480018396.01.T01:CDS
TGTGGTGACGGTTGAGCTTG+AGG 0.593034 4:+4322398 MsG0480018396.01.T01:CDS
TAACCATTGGCATCTGTCAA+GGG 0.598951 4:+4326937 MsG0480018396.01.T01:three_prime_UTR
GCGTGTGATTAGTGGAGAGG+TGG 0.608240 4:-4321072 None:intergenic
GCATGCTTGGATTAGTTGAA+AGG 0.608826 4:+4326543 MsG0480018396.01.T01:three_prime_UTR
TTTACCCAAAAGTTGTGCAG+TGG 0.610449 4:+4326771 MsG0480018396.01.T01:three_prime_UTR
CTCAGCAGGGATGATTTGAT+CGG 0.613011 4:-4321180 None:intergenic
GTCAGAGACGAGGTTGTGTG+AGG 0.618139 4:+4322359 MsG0480018396.01.T01:CDS
GTATCAGTTGAAGCCGATTG+GGG 0.620930 4:+4322455 MsG0480018396.01.T01:CDS
CCTGCTTTAAATCAATCGGA+CGG 0.625836 4:+4326705 MsG0480018396.01.T01:three_prime_UTR
GATTAATCATACGACTGGAA+AGG 0.629279 4:+4322431 MsG0480018396.01.T01:CDS
GGCATGATTCCTACTAGATG+AGG 0.630898 4:+4322531 MsG0480018396.01.T01:CDS
AACTGGTGAGGTGTATCCAT+TGG 0.639904 4:+4322335 MsG0480018396.01.T01:CDS
TTGTGGCGGAATCATATGCA+AGG 0.644779 4:+4322289 MsG0480018396.01.T01:CDS
GATACTCATCAGGATTGGAA+GGG 0.648665 4:-4321217 None:intergenic
AGCATAAGCAAAGATCCCAC+CGG 0.650304 4:-4322499 None:intergenic
AACCTCGTCTCTGACTCCAA+TGG 0.652007 4:-4322351 None:intergenic
GGCGCGTGTGATTAGTGGAG+AGG 0.655883 4:-4321075 None:intergenic
GGAGTGTCGTACCGGAGATG+TGG 0.658292 4:+4322380 MsG0480018396.01.T01:CDS
AGCAGAACAACTCAAAACGA+TGG 0.671545 4:+4320911 MsG0480018396.01.T01:exon
AAATACTCTATCATCATCGG+TGG 0.672742 4:+4321320 MsG0480018396.01.T01:CDS
TGACCCTTGACAGATGCCAA+TGG 0.676289 4:-4326940 None:intergenic
CTAAGGTAAGATGCTCAGCA+GGG 0.679779 4:-4321193 None:intergenic
ATCCATTGGAGTCAGAGACG+AGG 0.688602 4:+4322349 MsG0480018396.01.T01:CDS
GAGACCGTGAAAAGATGATG+CGG 0.688746 4:-4321129 None:intergenic
TGACACTTGACAGATGCCAA+AGG 0.695739 4:-4327011 None:intergenic
ACCGTGAAAAGATGATGCGG+CGG 0.701812 4:-4321126 None:intergenic
TCGTACCGGAGATGTGGTGA+CGG 0.731800 4:+4322386 MsG0480018396.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATCTAAATTATTAAGTA+GGG - Chr4:4324197-4324216 None:intergenic 10.0%
!! TAAAATCTAAATTATTAAGT+AGG - Chr4:4324198-4324217 None:intergenic 10.0%
!! TTTATTCCAAAAATAAAAAA+AGG + Chr4:4324261-4324280 MsG0480018396.01.T01:intron 10.0%
!!! ACTTTAGTTATATTTTTTTT+TGG + Chr4:4326167-4326186 MsG0480018396.01.T01:intron 10.0%
!!! TATATTTTTACATTCTTTTT+TGG + Chr4:4323158-4323177 MsG0480018396.01.T01:intron 10.0%
!!! TTTTTTTATTTTTGGAATAA+AGG - Chr4:4324262-4324281 None:intergenic 10.0%
!! AAGAAATTAAAAAAAATGCA+TGG + Chr4:4324585-4324604 MsG0480018396.01.T01:intron 15.0%
!! ACTGTTACATATTTAATATT+AGG + Chr4:4322246-4322265 MsG0480018396.01.T01:intron 15.0%
!! ATAATTGTAACTCTTAAAAT+TGG - Chr4:4324799-4324818 None:intergenic 15.0%
!! TAAATTTCTTGACAATATTT+CGG + Chr4:4327122-4327141 MsG0480018396.01.T01:three_prime_UTR 15.0%
!! TTTAGGAATATATAATGTTA+AGG + Chr4:4326356-4326375 MsG0480018396.01.T01:three_prime_UTR 15.0%
!! TTTATTAATTAACCGTATAA+AGG - Chr4:4323529-4323548 None:intergenic 15.0%
!!! ACACTTTTTATTTGAAAAAT+AGG + Chr4:4324954-4324973 MsG0480018396.01.T01:intron 15.0%
!!! ATTTTAAACTTCATAAACTA+AGG + Chr4:4324212-4324231 MsG0480018396.01.T01:intron 15.0%
!!! GTAAATAAAATGAGTTTTTA+GGG + Chr4:4323750-4323769 MsG0480018396.01.T01:intron 15.0%
!!! TGTAAATAAAATGAGTTTTT+AGG + Chr4:4323749-4323768 MsG0480018396.01.T01:intron 15.0%
!!! TTTTATACATAAATGCTTAT+AGG + Chr4:4325529-4325548 MsG0480018396.01.T01:intron 15.0%
!!! TTTTTAATTGTTTGATACAA+TGG + Chr4:4322587-4322606 MsG0480018396.01.T01:intron 15.0%
!! AAAAATACGAACTTTAAATC+TGG - Chr4:4326623-4326642 None:intergenic 20.0%
!! AAAATACGAACTTTAAATCT+GGG - Chr4:4326622-4326641 None:intergenic 20.0%
!! AAATAAAAAAAGGTTCCATT+TGG + Chr4:4324271-4324290 MsG0480018396.01.T01:intron 20.0%
!! ACTAATAATCTGTATAAGAT+AGG + Chr4:4325026-4325045 MsG0480018396.01.T01:intron 20.0%
!! ACTTCAAATAGAATCAATTA+TGG - Chr4:4321537-4321556 None:intergenic 20.0%
!! CTAATAATCTGTATAAGATA+GGG + Chr4:4325027-4325046 MsG0480018396.01.T01:intron 20.0%
!! GTTACAATAATTAGTTAAAC+TGG - Chr4:4322224-4322243 None:intergenic 20.0%
!! TAACTATTACATTTGATGTT+AGG + Chr4:4322133-4322152 MsG0480018396.01.T01:intron 20.0%
!! TAATGTCATGAAATTAATTC+TGG + Chr4:4323104-4323123 MsG0480018396.01.T01:intron 20.0%
!! TATGGACAAAGATAAAAATT+TGG - Chr4:4323288-4323307 None:intergenic 20.0%
!! TATTGTCAAGAAATTTACTT+TGG - Chr4:4327119-4327138 None:intergenic 20.0%
!! TGAATTGCATAATACTATTA+TGG + Chr4:4325660-4325679 MsG0480018396.01.T01:intron 20.0%
!! TTAGATTCACAAAATGAATT+AGG + Chr4:4325691-4325710 MsG0480018396.01.T01:intron 20.0%
!! TTCCATAATCAAATATGATA+TGG - Chr4:4325601-4325620 None:intergenic 20.0%
!! TTCCATATCATATTTGATTA+TGG + Chr4:4325596-4325615 MsG0480018396.01.T01:intron 20.0%
!! TTCTTATAGTTCATTCTATT+AGG + Chr4:4325909-4325928 MsG0480018396.01.T01:intron 20.0%
!! TTTACAATAATTAGTTACAC+TGG - Chr4:4322113-4322132 None:intergenic 20.0%
!!! ATGGAACCTTTTTTTATTTT+TGG - Chr4:4324270-4324289 None:intergenic 20.0%
!!! TACAGATTATTAGTTTTGAT+TGG - Chr4:4325020-4325039 None:intergenic 20.0%
!!! TATTAGAACATTTGAAACTT+CGG + Chr4:4326383-4326402 MsG0480018396.01.T01:three_prime_UTR 20.0%
!!! TCAAAGTTTTTGTTTACATT+TGG - Chr4:4323699-4323718 None:intergenic 20.0%
!!! TCAATTTGTTTTCTGTTTTA+GGG - Chr4:4325073-4325092 None:intergenic 20.0%
!!! TCTTTTTTGTTTTTCTCTAT+GGG + Chr4:4323663-4323682 MsG0480018396.01.T01:intron 20.0%
!!! TTCATTTTGTGAATCTAAAA+TGG - Chr4:4325689-4325708 None:intergenic 20.0%
!!! TTCTATTTGAAGTTAGAAAT+TGG + Chr4:4321544-4321563 MsG0480018396.01.T01:intron 20.0%
!!! TTGTCTAAAAATTTTGTTCA+GGG + Chr4:4324323-4324342 MsG0480018396.01.T01:intron 20.0%
!!! TTTTATTTTTGGAATAAAGG+AGG - Chr4:4324259-4324278 None:intergenic 20.0%
! AAAAGCAACTTCAAAATCTA+TGG - Chr4:4325967-4325986 None:intergenic 25.0%
! AAAGTAAACATTTCCATAGA+GGG - Chr4:4324536-4324555 None:intergenic 25.0%
! AAGGAAGTAACAAATAGTTA+TGG - Chr4:4323306-4323325 None:intergenic 25.0%
! AGTTAACCATTTAACTATTC+AGG - Chr4:4323778-4323797 None:intergenic 25.0%
! AGTTAGATTTAGTGTATGTT+TGG + Chr4:4321421-4321440 MsG0480018396.01.T01:intron 25.0%
! ATATGCCATCTATTTATAAG+TGG + Chr4:4324719-4324738 MsG0480018396.01.T01:intron 25.0%
! ATTAACCTGTTTACTTAAAC+AGG + Chr4:4325566-4325585 MsG0480018396.01.T01:intron 25.0%
! ATTAGAAAGAAAATGAGAAG+TGG + Chr4:4326887-4326906 MsG0480018396.01.T01:three_prime_UTR 25.0%
! GACTTATCAACAACTAATTT+GGG + Chr4:4325346-4325365 MsG0480018396.01.T01:intron 25.0%
! GATACATCAATATTAACCAT+TGG + Chr4:4326924-4326943 MsG0480018396.01.T01:three_prime_UTR 25.0%
! GTAAATTGTGAAGATTCAAA+AGG - Chr4:4323909-4323928 None:intergenic 25.0%
! GTCTAAGTTAAGTGTATATT+TGG - Chr4:4322031-4322050 None:intergenic 25.0%
! TAAAATTCTGTTACAAGAGT+GGG + Chr4:4322947-4322966 MsG0480018396.01.T01:intron 25.0%
! TAACTCTTAAAATTGGAGTT+GGG - Chr4:4324792-4324811 None:intergenic 25.0%
! TAAGGATGAGTTATGTAATT+TGG + Chr4:4326314-4326333 MsG0480018396.01.T01:three_prime_UTR 25.0%
! TATACATAAATGCTTATAGG+AGG + Chr4:4325532-4325551 MsG0480018396.01.T01:intron 25.0%
! TATTTAATATTAGGTGCTTC+TGG + Chr4:4322255-4322274 MsG0480018396.01.T01:intron 25.0%
! TCAAATAGAATCAATTATGG+AGG - Chr4:4321534-4321553 None:intergenic 25.0%
! TGACTTATCAACAACTAATT+TGG + Chr4:4325345-4325364 MsG0480018396.01.T01:intron 25.0%
! TTAAAATTCTGTTACAAGAG+TGG + Chr4:4322946-4322965 MsG0480018396.01.T01:intron 25.0%
! TTAATTGTTTGATACAATGG+TGG + Chr4:4322590-4322609 MsG0480018396.01.T01:intron 25.0%
! TTGAATCTTCACAATTTACA+CGG + Chr4:4323910-4323929 MsG0480018396.01.T01:intron 25.0%
! TTTGATACCATCTCAAAATT+TGG - Chr4:4324492-4324511 None:intergenic 25.0%
! TTTGTTCAGGGATATTTATT+TGG + Chr4:4324335-4324354 MsG0480018396.01.T01:intron 25.0%
!! AAAACCTGCTTTAAATCAAT+CGG + Chr4:4326701-4326720 MsG0480018396.01.T01:three_prime_UTR 25.0%
!! AACACTTTTAGCATTGTAAT+AGG - Chr4:4323383-4323402 None:intergenic 25.0%
!! AGCAATTTTAGATGAGATTA+AGG + Chr4:4322848-4322867 MsG0480018396.01.T01:intron 25.0%
!! GCAATTTTAGATGAGATTAA+GGG + Chr4:4322849-4322868 MsG0480018396.01.T01:intron 25.0%
!! GTTGTCTAAAAATTTTGTTC+AGG + Chr4:4324322-4324341 MsG0480018396.01.T01:intron 25.0%
!! TTCACTTCCAAAATCAATTT+TGG - Chr4:4321881-4321900 None:intergenic 25.0%
!! TTTTCAAAAGCTTAACCAAA+TGG - Chr4:4324289-4324308 None:intergenic 25.0%
!!! AAATTTGTTGCTTATTGCAA+TGG + Chr4:4325721-4325740 MsG0480018396.01.T01:intron 25.0%
!!! AATAAAAAGTGTTCCTTCTT+TGG - Chr4:4324946-4324965 None:intergenic 25.0%
!!! ACTTTCAACTCACTTTTATT+CGG - Chr4:4321656-4321675 None:intergenic 25.0%
!!! ATGTGTAATATTGGTTTACA+CGG + Chr4:4323005-4323024 MsG0480018396.01.T01:intron 25.0%
!!! CTCTTTTTTGTTTTTCTCTA+TGG + Chr4:4323662-4323681 MsG0480018396.01.T01:intron 25.0%
!!! CTTTTTTGTTTTTCTCTATG+GGG + Chr4:4323664-4323683 MsG0480018396.01.T01:intron 25.0%
!!! GAAAGTCACTGTTTTTTTTT+TGG - Chr4:4320876-4320895 None:intergenic 25.0%
!!! GTCAATTTGTTTTCTGTTTT+AGG - Chr4:4325074-4325093 None:intergenic 25.0%
!!! TGTTTGGTTTGATTTCTATA+CGG + Chr4:4321437-4321456 MsG0480018396.01.T01:intron 25.0%
!!! TTAGAATTGTCGACTATTTT+AGG + Chr4:4326339-4326358 MsG0480018396.01.T01:three_prime_UTR 25.0%
!!! TTTGGTTAAGCTTTTGAAAA+CGG + Chr4:4324289-4324308 MsG0480018396.01.T01:intron 25.0%
AATGACCTGTTTAAGTAAAC+AGG - Chr4:4325574-4325593 None:intergenic 30.0%
ACCAAACGAAAAATAACTTC+TGG - Chr4:4324364-4324383 None:intergenic 30.0%
ACCATCTCAAAATTTGGATT+GGG - Chr4:4324486-4324505 None:intergenic 30.0%
ACGAAATACTCTATCATCAT+CGG + Chr4:4321317-4321336 MsG0480018396.01.T01:CDS 30.0%
ATACGGATCAAAATTGAGTA+TGG + Chr4:4321454-4321473 MsG0480018396.01.T01:intron 30.0%
ATTGGTTGCATGTGTAATAT+TGG + Chr4:4322996-4323015 MsG0480018396.01.T01:intron 30.0%
CAAAGTAAACATTTCCATAG+AGG - Chr4:4324537-4324556 None:intergenic 30.0%
CAGCTGCTATATTTATTAGT+GGG + Chr4:4325767-4325786 MsG0480018396.01.T01:intron 30.0%
CATGTGATCACATTATTGAT+AGG + Chr4:4322736-4322755 MsG0480018396.01.T01:intron 30.0%
CGTATTAGTTACATGTCTTT+GGG + Chr4:4323048-4323067 MsG0480018396.01.T01:intron 30.0%
CTGCTTCATTTCATTATTCT+TGG + Chr4:4323218-4323237 MsG0480018396.01.T01:intron 30.0%
GAATAGTTTAGTACAACAGT+AGG - Chr4:4327097-4327116 None:intergenic 30.0%
GACATGTTGCTATGAAAATA+TGG + Chr4:4323951-4323970 MsG0480018396.01.T01:intron 30.0%
GCAAATCAAAAGCCTTTATA+CGG + Chr4:4323514-4323533 MsG0480018396.01.T01:intron 30.0%
GTAACTCTTAAAATTGGAGT+TGG - Chr4:4324793-4324812 None:intergenic 30.0%
GTATCACTATGAATAACCTT+TGG + Chr4:4326995-4327014 MsG0480018396.01.T01:three_prime_UTR 30.0%
GTATTCTGAGTTTCATTCTT+AGG - Chr4:4325283-4325302 None:intergenic 30.0%
GTCTCTCATTATATGAGATA+TGG + Chr4:4324396-4324415 MsG0480018396.01.T01:intron 30.0%
GTTAAGCTACTTGTTCTAAT+TGG - Chr4:4322087-4322106 None:intergenic 30.0%
TAAGCTAACTTTACCAACTA+CGG + Chr4:4325310-4325329 MsG0480018396.01.T01:intron 30.0%
TACCATCTCAAAATTTGGAT+TGG - Chr4:4324487-4324506 None:intergenic 30.0%
TACTGTTGGGATATAGATAT+AGG - Chr4:4325164-4325183 None:intergenic 30.0%
TAGGAGAATCCATAAAATTC+TGG + Chr4:4325198-4325217 MsG0480018396.01.T01:intron 30.0%
TATAGGAGAATTAGTCAGTT+AGG - Chr4:4325147-4325166 None:intergenic 30.0%
TATGAAAGTTTACAACAGCT+AGG - Chr4:4324001-4324020 None:intergenic 30.0%
TCAGCTGCTATATTTATTAG+TGG + Chr4:4325766-4325785 MsG0480018396.01.T01:intron 30.0%
TCGTATTAGTTACATGTCTT+TGG + Chr4:4323047-4323066 MsG0480018396.01.T01:intron 30.0%
TCTCAATAGTGAATTCTCAT+TGG + Chr4:4322978-4322997 MsG0480018396.01.T01:intron 30.0%
TGAATCTTCACAATTTACAC+GGG + Chr4:4323911-4323930 MsG0480018396.01.T01:intron 30.0%
TTAAATGGTTAACTAGCGAA+AGG + Chr4:4323784-4323803 MsG0480018396.01.T01:intron 30.0%
TTATTGATAGGATCCTTTAC+TGG + Chr4:4322748-4322767 MsG0480018396.01.T01:intron 30.0%
TTGACTGATGAAAAGTAGTT+TGG + Chr4:4325855-4325874 MsG0480018396.01.T01:intron 30.0%
TTTCTACCAACATGATAACT+AGG + Chr4:4323403-4323422 MsG0480018396.01.T01:intron 30.0%
! ACTTTCATATTTGTTGCAGT+AGG + Chr4:4324012-4324031 MsG0480018396.01.T01:intron 30.0%
! ACTTTTGAGCGATTTATGTT+TGG - Chr4:4321989-4322008 None:intergenic 30.0%
! AGTTGAACAACAAATTTTGG+AGG - Chr4:4321947-4321966 None:intergenic 30.0%
! CTTTTGAGCGATTTATGTTT+GGG - Chr4:4321988-4322007 None:intergenic 30.0%
! GCATTTTACATTCGTCTATT+TGG - Chr4:4326475-4326494 None:intergenic 30.0%
!! AGAATTGTTTCTGACATGTT+TGG + Chr4:4321483-4321502 MsG0480018396.01.T01:intron 30.0%
!! AGTAGAATTGATTTTGTCTC+TGG - Chr4:4321789-4321808 None:intergenic 30.0%
!! AGTGGAACCAAAATTGATTT+TGG + Chr4:4321871-4321890 MsG0480018396.01.T01:intron 30.0%
!! ATTTTGGAAGTGAACTGATT+TGG + Chr4:4321887-4321906 MsG0480018396.01.T01:intron 30.0%
!! GTGAGTTGAACAACAAATTT+TGG - Chr4:4321950-4321969 None:intergenic 30.0%
!! TAAAATTTAGTTTGAGGTGG+TGG + Chr4:4323128-4323147 MsG0480018396.01.T01:intron 30.0%
!! TCTGGCTAAAATTTAGTTTG+AGG + Chr4:4323122-4323141 MsG0480018396.01.T01:intron 30.0%
!! TTTTTCACTTTTCACTGAGT+TGG + Chr4:4323602-4323621 MsG0480018396.01.T01:intron 30.0%
!!! ACCAGAAGTTATTTTTCGTT+TGG + Chr4:4324360-4324379 MsG0480018396.01.T01:intron 30.0%
!!! ACCATGTATGTTTAGTTTTG+CGG + Chr4:4321601-4321620 MsG0480018396.01.T01:intron 30.0%
!!! AGTCACTGTTTTTTTTTTGG+CGG - Chr4:4320873-4320892 None:intergenic 30.0%
!!! ATCAATTTTGGTTCCACTTT+TGG - Chr4:4321869-4321888 None:intergenic 30.0%
!!! CATATGCAAGGATTTTTTTC+CGG + Chr4:4322301-4322320 MsG0480018396.01.T01:CDS 30.0%
!!! GTATTTCGTTTTAGTTTCAC+CGG - Chr4:4321306-4321325 None:intergenic 30.0%
AAACTAAGGTTCCGTTTAGT+TGG + Chr4:4324226-4324245 MsG0480018396.01.T01:intron 35.0%
AAATACTCTATCATCATCGG+TGG + Chr4:4321320-4321339 MsG0480018396.01.T01:CDS 35.0%
AACACAATACCTCATCTAGT+AGG - Chr4:4322543-4322562 None:intergenic 35.0%
AACTATAGTATCATGACTGG+AGG - Chr4:4323358-4323377 None:intergenic 35.0%
AAGGAGTTGGATTGAAATGA+AGG - Chr4:4321038-4321057 None:intergenic 35.0%
AATTGGCAGTCAAGTTTCTT+TGG - Chr4:4326833-4326852 None:intergenic 35.0%
ACCCACCACTTATAAATAGA+TGG - Chr4:4324727-4324746 None:intergenic 35.0%
ACCGCAAAACTAAACATACA+TGG - Chr4:4321605-4321624 None:intergenic 35.0%
ACGAAGTAATAGATTCTCAC+TGG - Chr4:4322908-4322927 None:intergenic 35.0%
ACTAATTTGGGCTTATCTAC+TGG + Chr4:4325358-4325377 MsG0480018396.01.T01:intron 35.0%
ACTCACAATGAGTAGCAAAA+AGG - Chr4:4322774-4322793 None:intergenic 35.0%
AGAAGTGGAAGAATTCTACT+TGG + Chr4:4326902-4326921 MsG0480018396.01.T01:three_prime_UTR 35.0%
AGAATCGATGTTGTCATGTT+TGG - Chr4:4321821-4321840 None:intergenic 35.0%
AGTAATAGATTCTCACTGGA+TGG - Chr4:4322904-4322923 None:intergenic 35.0%
ATCTACTGCTGCATGTTTAA+TGG - Chr4:4326220-4326239 None:intergenic 35.0%
ATGGCATATCTTATCCAATG+TGG - Chr4:4324708-4324727 None:intergenic 35.0%
ATTAGTTACATGTCTTTGGG+CGG + Chr4:4323051-4323070 MsG0480018396.01.T01:intron 35.0%
ATTGTTGTCAACACTCAACA+AGG + Chr4:4326010-4326029 MsG0480018396.01.T01:intron 35.0%
CACATCTTTCTACAGATCTA+TGG + Chr4:4324095-4324114 MsG0480018396.01.T01:intron 35.0%
GAGAACTATAGTATCATGAC+TGG - Chr4:4323361-4323380 None:intergenic 35.0%
GAGTAAACTAGCTAAAGACA+TGG + Chr4:4324161-4324180 MsG0480018396.01.T01:intron 35.0%
GATTAATCATACGACTGGAA+AGG + Chr4:4322431-4322450 MsG0480018396.01.T01:CDS 35.0%
GCAAATATAAATGAACAGCC+AGG - Chr4:4326126-4326145 None:intergenic 35.0%
GCATGATGTATATATTCCAG+CGG - Chr4:4322167-4322186 None:intergenic 35.0%
GCCATCTATTTATAAGTGGT+GGG + Chr4:4324723-4324742 MsG0480018396.01.T01:intron 35.0%
GTTAGACCTAGTTATCATGT+TGG - Chr4:4323412-4323431 None:intergenic 35.0%
TAGCTGACATAGAGAAGAAT+TGG + Chr4:4324069-4324088 MsG0480018396.01.T01:intron 35.0%
TATCAAATACCTAATGCGAC+CGG - Chr4:4321383-4321402 None:intergenic 35.0%
TGCCATCTATTTATAAGTGG+TGG + Chr4:4324722-4324741 MsG0480018396.01.T01:intron 35.0%
TGGAATTGAATCTGTGCATT+TGG + Chr4:4325616-4325635 MsG0480018396.01.T01:intron 35.0%
TGGAGAATTAGTAAACTGCT+TGG + Chr4:4324115-4324134 MsG0480018396.01.T01:intron 35.0%
TGGCATGAATAACAAGAGAA+TGG + Chr4:4324865-4324884 MsG0480018396.01.T01:intron 35.0%
TTAACTAGCGAAAGGATGAA+TGG + Chr4:4323792-4323811 MsG0480018396.01.T01:intron 35.0%
TTAGATGTCCAAATGCTTCT+AGG + Chr4:4326509-4326528 MsG0480018396.01.T01:three_prime_UTR 35.0%
TTATTAAGTAGGGATACTCC+AGG - Chr4:4324187-4324206 None:intergenic 35.0%
TTGTTTGATACAATGGTGGT+AGG + Chr4:4322594-4322613 MsG0480018396.01.T01:intron 35.0%
! AAAACCACTGCACAACTTTT+GGG - Chr4:4326778-4326797 None:intergenic 35.0%
! AGAATTGTTGCCTGTTTTCA+CGG + Chr4:4326257-4326276 MsG0480018396.01.T01:three_prime_UTR 35.0%
! AGAGACACTCCAGAATTTTA+TGG - Chr4:4325210-4325229 None:intergenic 35.0%
! AGGGTACCTGAATAGTTAAA+TGG + Chr4:4323769-4323788 MsG0480018396.01.T01:intron 35.0%
! CTTGAAGCTTAATGCTACTT+GGG - Chr4:4326804-4326823 None:intergenic 35.0%
! GACTGTGTCAACAGTTATTT+TGG - Chr4:4327075-4327094 None:intergenic 35.0%
! GCTATGTTACTTGCTCTAAT+TGG - Chr4:4322198-4322217 None:intergenic 35.0%
! TAGGCTAGGATGATTTGTAA+TGG - Chr4:4325264-4325283 None:intergenic 35.0%
! TTGCTTATTGCAATGGCTTT+TGG + Chr4:4325728-4325747 MsG0480018396.01.T01:intron 35.0%
!! ACCCAATCCAAATTTTGAGA+TGG + Chr4:4324482-4324501 MsG0480018396.01.T01:intron 35.0%
!! CACTTCTAAAGTGAGTTTCA+AGG - Chr4:4323325-4323344 None:intergenic 35.0%
!! CTTGGTTCTTTTGCCTTAAT+CGG + Chr4:4321245-4321264 MsG0480018396.01.T01:CDS 35.0%
!! GGCTAAAATTTAGTTTGAGG+TGG + Chr4:4323125-4323144 MsG0480018396.01.T01:intron 35.0%
!! TCTACACCTCTAGAATCATT+TGG + Chr4:4321838-4321857 MsG0480018396.01.T01:intron 35.0%
!! TCTATGTTCCTAGAAGCATT+TGG - Chr4:4326520-4326539 None:intergenic 35.0%
!! TTCTTGATAGTGTAGCTGTT+AGG + Chr4:4324903-4324922 MsG0480018396.01.T01:intron 35.0%
!! TTCTTTGGAATCCGATTCTT+GGG - Chr4:4324931-4324950 None:intergenic 35.0%
!!! AACAGTTATTTTGGACATGC+AGG - Chr4:4327066-4327085 None:intergenic 35.0%
!!! AAGGATTTTTTTCCGGAACT+CGG + Chr4:4322308-4322327 MsG0480018396.01.T01:CDS 35.0%
!!! TAAAGGCTTTTGATTTGCGT+CGG - Chr4:4323512-4323531 None:intergenic 35.0%
AAAGCCTATCCAAGATCCAT+TGG + Chr4:4324509-4324528 MsG0480018396.01.T01:intron 40.0%
AAGCCTATCCAAGATCCATT+GGG + Chr4:4324510-4324529 MsG0480018396.01.T01:intron 40.0%
AATAGATTCTCACTGGATGG+TGG - Chr4:4322901-4322920 None:intergenic 40.0%
AATCCAAAAGCAACCGTAGT+TGG - Chr4:4325326-4325345 None:intergenic 40.0%
AATCGTACAGTGTACGAATC+AGG - Chr4:4321275-4321294 None:intergenic 40.0%
AATGTGTCCTGCAATTGAAC+AGG - Chr4:4325793-4325812 None:intergenic 40.0%
AATTTACACGGGTCAAGTCA+AGG + Chr4:4323922-4323941 MsG0480018396.01.T01:intron 40.0%
ACTGTACGATTCGTTGAATC+CGG + Chr4:4321284-4321303 MsG0480018396.01.T01:CDS 40.0%
AGCAGAACAACTCAAAACGA+TGG + Chr4:4320911-4320930 MsG0480018396.01.T01:exon 40.0%
AGTAGCAAAAAGGCCAGTAA+AGG - Chr4:4322764-4322783 None:intergenic 40.0%
AGTATCAGTTGAAGCCGATT+GGG + Chr4:4322454-4322473 MsG0480018396.01.T01:CDS 40.0%
CAACTCAATCCTTACGAATC+CGG - Chr4:4324461-4324480 None:intergenic 40.0%
CAAGAATCGGATTCCAAAGA+AGG + Chr4:4324930-4324949 MsG0480018396.01.T01:intron 40.0%
CAATTCAGTGCCTAATCTCA+GGG - Chr4:4325647-4325666 None:intergenic 40.0%
CCAAGAACATGCATGTCATT+CGG - Chr4:4326083-4326102 None:intergenic 40.0%
CCTTACAAAATCAGCTCGTA+AGG - Chr4:4324758-4324777 None:intergenic 40.0%
CGCTATAAGCTATACTTGAG+AGG - Chr4:4325463-4325482 None:intergenic 40.0%
CGGTTGATTAATCATACGAC+TGG + Chr4:4322426-4322445 MsG0480018396.01.T01:CDS 40.0%
CTACTGGTATAAGCACTTCT+CGG + Chr4:4325374-4325393 MsG0480018396.01.T01:intron 40.0%
CTGAGTTTCATTCTTAGGCT+AGG - Chr4:4325278-4325297 None:intergenic 40.0%
CTGTCAAGTGTCAATGTCTA+TGG + Chr4:4327021-4327040 MsG0480018396.01.T01:three_prime_UTR 40.0%
CTTCTGATACTCATCAGGAT+TGG - Chr4:4321225-4321244 None:intergenic 40.0%
CTTGGAAACATACAGATCAG+AGG + Chr4:4324133-4324152 MsG0480018396.01.T01:intron 40.0%
GACACTGCATGCTTTCTAAA+AGG - Chr4:4323571-4323590 None:intergenic 40.0%
GAGAAGCCAAATGATTCTAG+AGG - Chr4:4321847-4321866 None:intergenic 40.0%
GATACTCATCAGGATTGGAA+GGG - Chr4:4321220-4321239 None:intergenic 40.0%
GCTTGAAGCTTAATGCTACT+TGG - Chr4:4326805-4326824 None:intergenic 40.0%
GTAGTTCTTACCTTACAAGC+CGG + Chr4:4324439-4324458 MsG0480018396.01.T01:intron 40.0%
TAACCATTGGCATCTGTCAA+GGG + Chr4:4326937-4326956 MsG0480018396.01.T01:three_prime_UTR 40.0%
TAGTATCATGACTGGAGGAA+TGG - Chr4:4323353-4323372 None:intergenic 40.0%
TGAAAATCCTGTGAAACGCA+GGG + Chr4:4323841-4323860 MsG0480018396.01.T01:intron 40.0%
TGAATGGAATCCGTGAAAAC+AGG - Chr4:4326270-4326289 None:intergenic 40.0%
TGATACTCATCAGGATTGGA+AGG - Chr4:4321221-4321240 None:intergenic 40.0%
TGGCCATCCGATTAAAAGAT+CGG + Chr4:4326592-4326611 MsG0480018396.01.T01:three_prime_UTR 40.0%
TGTGTTGAGAAGTTCCACAT+TGG + Chr4:4324691-4324710 MsG0480018396.01.T01:intron 40.0%
TTAACCATTGGCATCTGTCA+AGG + Chr4:4326936-4326955 MsG0480018396.01.T01:three_prime_UTR 40.0%
TTAGTTACATGTCTTTGGGC+GGG + Chr4:4323052-4323071 MsG0480018396.01.T01:intron 40.0%
TTGAAAATCCTGTGAAACGC+AGG + Chr4:4323840-4323859 MsG0480018396.01.T01:intron 40.0%
TTTACCCAAAAGTTGTGCAG+TGG + Chr4:4326771-4326790 MsG0480018396.01.T01:three_prime_UTR 40.0%
TTTCTTCAAACTTGTGTGCC+TGG + Chr4:4326105-4326124 MsG0480018396.01.T01:intron 40.0%
TTTGCTTATGCTAGGAAGAC+TGG + Chr4:4322510-4322529 MsG0480018396.01.T01:CDS 40.0%
! ACGCTCTAGATATCTTGTCT+TGG + Chr4:4324656-4324675 MsG0480018396.01.T01:intron 40.0%
! AGGATGATTTGTAATGGAGG+AGG - Chr4:4325258-4325277 None:intergenic 40.0%
! ATCATCGGTGGTGCTAATTT+CGG + Chr4:4321332-4321351 MsG0480018396.01.T01:CDS 40.0%
! ATTGCAATGGCTTTTGGACT+GGG + Chr4:4325734-4325753 MsG0480018396.01.T01:intron 40.0%
! ATTGCAGGACACATTTTCTC+AGG + Chr4:4325798-4325817 MsG0480018396.01.T01:intron 40.0%
! ATTGGTTTCACAACCAGTGT+TGG - Chr4:4325002-4325021 None:intergenic 40.0%
! CAAAACCACTGCACAACTTT+TGG - Chr4:4326779-4326798 None:intergenic 40.0%
! CAAAAGTTGTGCAGTGGTTT+TGG + Chr4:4326777-4326796 MsG0480018396.01.T01:three_prime_UTR 40.0%
! CATCCGATCTTTTAATCGGA+TGG - Chr4:4326598-4326617 None:intergenic 40.0%
! CCTGCTTTAAATCAATCGGA+CGG + Chr4:4326705-4326724 MsG0480018396.01.T01:three_prime_UTR 40.0%
! CGCTCTAGATATCTTGTCTT+GGG + Chr4:4324657-4324676 MsG0480018396.01.T01:intron 40.0%
! GCTAGGATGATTTGTAATGG+AGG - Chr4:4325261-4325280 None:intergenic 40.0%
! GGGTCATCCGATCTTTTAAT+CGG - Chr4:4326602-4326621 None:intergenic 40.0%
! GTTGGTTCTTTGCAGATAGA+AGG + Chr4:4323620-4323639 MsG0480018396.01.T01:intron 40.0%
! TATTGCAATGGCTTTTGGAC+TGG + Chr4:4325733-4325752 MsG0480018396.01.T01:intron 40.0%
! TCATTTGGCTTCTCCAAAAG+TGG + Chr4:4321853-4321872 MsG0480018396.01.T01:intron 40.0%
!! AGAGAGTGAGAGTTTGTTAG+AGG - Chr4:4320985-4321004 None:intergenic 40.0%
!! CCTTACGAGCTGATTTTGTA+AGG + Chr4:4324755-4324774 MsG0480018396.01.T01:intron 40.0%
!! CTAGTCATGCAGCTTTGTTA+AGG + Chr4:4326296-4326315 MsG0480018396.01.T01:three_prime_UTR 40.0%
!! CTTCTTTGGAATCCGATTCT+TGG - Chr4:4324932-4324951 None:intergenic 40.0%
!! GAGAGTGAGAGTTTGTTAGA+GGG - Chr4:4320984-4321003 None:intergenic 40.0%
!! GCATGCTTGGATTAGTTGAA+AGG + Chr4:4326543-4326562 MsG0480018396.01.T01:three_prime_UTR 40.0%
!! GTGAACTGATTTGGCATGTT+TGG + Chr4:4321896-4321915 MsG0480018396.01.T01:intron 40.0%
!! TTACCAACTACGGTTGCTTT+TGG + Chr4:4325320-4325339 MsG0480018396.01.T01:intron 40.0%
AACTAGCTAAAGACATGGCC+TGG + Chr4:4324166-4324185 MsG0480018396.01.T01:intron 45.0%
AACTGGTGAGGTGTATCCAT+TGG + Chr4:4322335-4322354 MsG0480018396.01.T01:CDS 45.0%
ACAACAGCTAGGTTTGCAGT+TGG - Chr4:4323990-4324009 None:intergenic 45.0%
ACATGCAGCAGTAGATGCTT+TGG + Chr4:4326224-4326243 MsG0480018396.01.T01:intron 45.0%
ACTAAGGTAAGATGCTCAGC+AGG - Chr4:4321197-4321216 None:intergenic 45.0%
ACTAGCGAAAGGATGAATGG+TGG + Chr4:4323795-4323814 MsG0480018396.01.T01:intron 45.0%
ACTGACAACTCTGCTACTGT+TGG - Chr4:4325178-4325197 None:intergenic 45.0%
AGATAGAGAGAAGTGAGTGC+AGG + Chr4:4324612-4324631 MsG0480018396.01.T01:intron 45.0%
AGCATAAGCAAAGATCCCAC+CGG - Chr4:4322502-4322521 None:intergenic 45.0%
AGTGTCTCTTGAGATCTGCA+AGG + Chr4:4325221-4325240 MsG0480018396.01.T01:intron 45.0%
ATCAGGATTGGAAGGGACTA+AGG - Chr4:4321213-4321232 None:intergenic 45.0%
CACTGCACTAAGCACATTTG+TGG + Chr4:4326572-4326591 MsG0480018396.01.T01:three_prime_UTR 45.0%
CAGTAGCAGAGTTGTCAGTT+AGG + Chr4:4325179-4325198 MsG0480018396.01.T01:intron 45.0%
CATGCAGCAGTAGATGCTTT+GGG + Chr4:4326225-4326244 MsG0480018396.01.T01:intron 45.0%
CCAAGCTTCTGATACTCATC+AGG - Chr4:4321230-4321249 None:intergenic 45.0%
CCAATTGAGCTAAGGCTCTT+GGG + Chr4:4326847-4326866 MsG0480018396.01.T01:three_prime_UTR 45.0%
CCGAATGACATGCATGTTCT+TGG + Chr4:4326080-4326099 MsG0480018396.01.T01:intron 45.0%
CCTGATGAGTATCAGAAGCT+TGG + Chr4:4321227-4321246 MsG0480018396.01.T01:CDS 45.0%
CGAATCAGGAAGTCCGATTA+AGG - Chr4:4321261-4321280 None:intergenic 45.0%
CGGATTCGTAAGGATTGAGT+TGG + Chr4:4324459-4324478 MsG0480018396.01.T01:intron 45.0%
CTAAGGTAAGATGCTCAGCA+GGG - Chr4:4321196-4321215 None:intergenic 45.0%
CTCAGCAGGGATGATTTGAT+CGG - Chr4:4321183-4321202 None:intergenic 45.0%
CTGACAACTCTGCTACTGTT+GGG - Chr4:4325177-4325196 None:intergenic 45.0%
CTTGACTGCCAATTGAGCTA+AGG + Chr4:4326839-4326858 MsG0480018396.01.T01:three_prime_UTR 45.0%
GAAGGTTAGGGTTTGTGGAA+TGG - Chr4:4320958-4320977 None:intergenic 45.0%
GAGACCGTGAAAAGATGATG+CGG - Chr4:4321132-4321151 None:intergenic 45.0%
GAGGACCTAAGCCAACTAAA+CGG - Chr4:4324240-4324259 None:intergenic 45.0%
GAGTATCAGTTGAAGCCGAT+TGG + Chr4:4322453-4322472 MsG0480018396.01.T01:CDS 45.0%
GATAGAGAGAAGTGAGTGCA+GGG + Chr4:4324613-4324632 MsG0480018396.01.T01:intron 45.0%
GATATCTTGTCTTGGGTGTG+AGG + Chr4:4324664-4324683 MsG0480018396.01.T01:intron 45.0%
GCAATTCAGTGCCTAATCTC+AGG - Chr4:4325648-4325667 None:intergenic 45.0%
GCTGTTAGGAACCCAAGAAT+CGG + Chr4:4324917-4324936 MsG0480018396.01.T01:intron 45.0%
GGCATGATTCCTACTAGATG+AGG + Chr4:4322531-4322550 MsG0480018396.01.T01:CDS 45.0%
GTATCAGTTGAAGCCGATTG+GGG + Chr4:4322455-4322474 MsG0480018396.01.T01:CDS 45.0%
GTGGGATCTTTGCTTATGCT+AGG + Chr4:4322502-4322521 MsG0480018396.01.T01:CDS 45.0%
GTTAGAGGGAGTGAAGGTTA+GGG - Chr4:4320970-4320989 None:intergenic 45.0%
TATCATGACTGGAGGAATGG+AGG - Chr4:4323350-4323369 None:intergenic 45.0%
TATGAAGCCACAACCTATGC+AGG - Chr4:4323886-4323905 None:intergenic 45.0%
TGACACTTGACAGATGCCAA+AGG - Chr4:4327014-4327033 None:intergenic 45.0%
TGTTAGAGGGAGTGAAGGTT+AGG - Chr4:4320971-4320990 None:intergenic 45.0%
TTTGGCTACACCCTGAGATT+AGG + Chr4:4325634-4325653 MsG0480018396.01.T01:intron 45.0%
! AAACGCAGGGACTGTTTTCT+TGG + Chr4:4323854-4323873 MsG0480018396.01.T01:intron 45.0%
! AACGCAGGGACTGTTTTCTT+GGG + Chr4:4323855-4323874 MsG0480018396.01.T01:intron 45.0%
! AGGTTCCGTTTAGTTGGCTT+AGG + Chr4:4324232-4324251 MsG0480018396.01.T01:intron 45.0%
! CCGTCCGATTGATTTAAAGC+AGG - Chr4:4326708-4326727 None:intergenic 45.0%
! GAGATTAAGGGCATATGCTG+TGG + Chr4:4322861-4322880 MsG0480018396.01.T01:intron 45.0%
! GCATGACTAGAGCATCTGAA+TGG - Chr4:4326286-4326305 None:intergenic 45.0%
! GGAACATAGAAGTGCATGCT+TGG + Chr4:4326530-4326549 MsG0480018396.01.T01:three_prime_UTR 45.0%
! TTGTGGCGGAATCATATGCA+AGG + Chr4:4322289-4322308 MsG0480018396.01.T01:CDS 45.0%
!! GAGTTTGTTAGAGGGAGTGA+AGG - Chr4:4320976-4320995 None:intergenic 45.0%
!!! GATTTTTTTCCGGAACTCGG+TGG + Chr4:4322311-4322330 MsG0480018396.01.T01:CDS 45.0%
!!! GGTGATGGTTTTGAAGGAGT+TGG - Chr4:4321051-4321070 None:intergenic 45.0%
AAACAGTCCCTGCGTTTCAC+AGG - Chr4:4323851-4323870 None:intergenic 50.0%
AACCTCGTCTCTGACTCCAA+TGG - Chr4:4322354-4322373 None:intergenic 50.0%
AAGATCCATTGGGCCCTCTA+TGG + Chr4:4324520-4324539 MsG0480018396.01.T01:intron 50.0%
AAGTGAGTGCAGGGAATCTC+GGG + Chr4:4324622-4324641 MsG0480018396.01.T01:intron 50.0%
ACCGTGAAAAGATGATGCGG+CGG - Chr4:4321129-4321148 None:intergenic 50.0%
ATAGAGGGCCCAATGGATCT+TGG - Chr4:4324521-4324540 None:intergenic 50.0%
ATCCATTGGAGTCAGAGACG+AGG + Chr4:4322349-4322368 MsG0480018396.01.T01:CDS 50.0%
ATCTTCTCGTGAACACGCTC+CGG + Chr4:4321361-4321380 MsG0480018396.01.T01:CDS 50.0%
CATTTCCATAGAGGGCCCAA+TGG - Chr4:4324528-4324547 None:intergenic 50.0%
CCCAAGAGCCTTAGCTCAAT+TGG - Chr4:4326850-4326869 None:intergenic 50.0%
CCTTACAAGCCGGATTCGTA+AGG + Chr4:4324449-4324468 MsG0480018396.01.T01:intron 50.0%
CGGTTGAGCTTGAGGAGAAT+CGG + Chr4:4322406-4322425 MsG0480018396.01.T01:CDS 50.0%
GAAGTGAGTGCAGGGAATCT+CGG + Chr4:4324621-4324640 MsG0480018396.01.T01:intron 50.0%
GCCAATTGAGCTAAGGCTCT+TGG + Chr4:4326846-4326865 MsG0480018396.01.T01:three_prime_UTR 50.0%
GCTAAGGCTCTTGGGAATAC+TGG + Chr4:4326855-4326874 MsG0480018396.01.T01:three_prime_UTR 50.0%
GGAGTGAAGGTTAGGGTTTG+TGG - Chr4:4320963-4320982 None:intergenic 50.0%
TGACCCTTGACAGATGCCAA+TGG - Chr4:4326943-4326962 None:intergenic 50.0%
TGTGATTAGTGGAGAGGTGG+TGG - Chr4:4321072-4321091 None:intergenic 50.0%
TTCTTGGGGAAGACCTGCAT+AGG + Chr4:4323870-4323889 MsG0480018396.01.T01:intron 50.0%
TTGGGCGGGCATATGGTAAT+TGG + Chr4:4323066-4323085 MsG0480018396.01.T01:intron 50.0%
! AAGCACTTCTCGGAGTGTCT+AGG + Chr4:4325384-4325403 MsG0480018396.01.T01:intron 50.0%
! ACCGCCGCATCATCTTTTCA+CGG + Chr4:4321125-4321144 MsG0480018396.01.T01:CDS 50.0%
! ACGCAGGGACTGTTTTCTTG+GGG + Chr4:4323856-4323875 MsG0480018396.01.T01:intron 50.0%
! CCTTACGAATCCGGCTTGTA+AGG - Chr4:4324452-4324471 None:intergenic 50.0%
! GGTGGTGCTAATTTCGGATG+CGG + Chr4:4321338-4321357 MsG0480018396.01.T01:CDS 50.0%
! TAGTGGGCCTGTTCAATTGC+AGG + Chr4:4325783-4325802 MsG0480018396.01.T01:intron 50.0%
!! TTGTGTGAGGAGTGTCGTAC+CGG + Chr4:4322372-4322391 MsG0480018396.01.T01:CDS 50.0%
!!! GGTGGTGGTGATGGTTTTGA+AGG - Chr4:4321057-4321076 None:intergenic 50.0%
AAAAGATGATGCGGCGGTGG+TGG - Chr4:4321123-4321142 None:intergenic 55.0%
ACTGGACCAGCATCCCCAAT+CGG - Chr4:4322471-4322490 None:intergenic 55.0%
ATGTTAGGTGCTTCTGCCGC+TGG + Chr4:4322148-4322167 MsG0480018396.01.T01:intron 55.0%
CACGGTCTCTGCTACGTTGT+TGG + Chr4:4321143-4321162 MsG0480018396.01.T01:CDS 55.0%
CATGTCTTTGGGCGGGCATA+TGG + Chr4:4323059-4323078 MsG0480018396.01.T01:intron 55.0%
CTCAACCGTCACCACATCTC+CGG - Chr4:4322394-4322413 None:intergenic 55.0%
GAGAGCAAGCTCTCCAACAC+TGG + Chr4:4324986-4325005 MsG0480018396.01.T01:intron 55.0%
GCAGGGAATCTCGGGCTATT+CGG + Chr4:4324630-4324649 MsG0480018396.01.T01:intron 55.0%
GCGTGTGATTAGTGGAGAGG+TGG - Chr4:4321075-4321094 None:intergenic 55.0%
GGATGCTGGTCCAGTGATTG+AGG + Chr4:4322476-4322495 MsG0480018396.01.T01:CDS 55.0%
GGGAAGACCTGCATAGGTTG+TGG + Chr4:4323876-4323895 MsG0480018396.01.T01:intron 55.0%
GGGCCCAATGGATCTTGGAT+AGG - Chr4:4324516-4324535 None:intergenic 55.0%
GTCAGAGACGAGGTTGTGTG+AGG + Chr4:4322359-4322378 MsG0480018396.01.T01:CDS 55.0%
GTGAAAAGATGATGCGGCGG+TGG - Chr4:4321126-4321145 None:intergenic 55.0%
TCGTACCGGAGATGTGGTGA+CGG + Chr4:4322386-4322405 MsG0480018396.01.T01:CDS 55.0%
TTGAAGCCGATTGGGGATGC+TGG + Chr4:4322462-4322481 MsG0480018396.01.T01:CDS 55.0%
! TAGTGGAGAGGTGGTGGTGA+TGG - Chr4:4321066-4321085 None:intergenic 55.0%
!! TGTGGTGACGGTTGAGCTTG+AGG + Chr4:4322398-4322417 MsG0480018396.01.T01:CDS 55.0%
!! TTCTGGTGCTGCTGCTGTTG+TGG + Chr4:4322272-4322291 MsG0480018396.01.T01:CDS 55.0%
ATCCCACCGGCCTCAATCAC+TGG - Chr4:4322489-4322508 None:intergenic 60.0%
CACCAGTTGCCACCGAGTTC+CGG - Chr4:4322323-4322342 None:intergenic 60.0%
GAACACGCTCCGGTCGCATT+AGG + Chr4:4321371-4321390 MsG0480018396.01.T01:CDS 60.0%
GCTGGTCCAGTGATTGAGGC+CGG + Chr4:4322480-4322499 MsG0480018396.01.T01:CDS 60.0%
GCTTGGGCGCGTGTGATTAG+TGG - Chr4:4321083-4321102 None:intergenic 60.0%
GGCGCGTGTGATTAGTGGAG+AGG - Chr4:4321078-4321097 None:intergenic 60.0%
GTCCAGTGATTGAGGCCGGT+GGG + Chr4:4322484-4322503 MsG0480018396.01.T01:CDS 60.0%
! GAACTCGGTGGCAACTGGTG+AGG + Chr4:4322323-4322342 MsG0480018396.01.T01:CDS 60.0%
! TTCCGGAACTCGGTGGCAAC+TGG + Chr4:4322318-4322337 MsG0480018396.01.T01:CDS 60.0%
!! GGAGTGTCGTACCGGAGATG+TGG + Chr4:4322380-4322399 MsG0480018396.01.T01:CDS 60.0%
!! TGGTGCTGCTGCTGTTGTGG+CGG + Chr4:4322275-4322294 MsG0480018396.01.T01:CDS 60.0%
GACGGGAGAAGGTGGCGCTT+GGG - Chr4:4321099-4321118 None:intergenic 65.0%
GGTCCAGTGATTGAGGCCGG+TGG + Chr4:4322483-4322502 MsG0480018396.01.T01:CDS 65.0%
TGACGGGAGAAGGTGGCGCT+TGG - Chr4:4321100-4321119 None:intergenic 65.0%
! TGATGCGGCGGTGGTGGTGA+CGG - Chr4:4321117-4321136 None:intergenic 65.0%
!! GTGGTGGTGACGGGAGAAGG+TGG - Chr4:4321107-4321126 None:intergenic 65.0%
! GATGCGGCGGTGGTGGTGAC+GGG - Chr4:4321116-4321135 None:intergenic 70.0%
!! GCGGTGGTGGTGACGGGAGA+AGG - Chr4:4321110-4321129 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr4 gene 4320857 4327149 4320857 ID=MsG0480018396.01;Name=MsG0480018396.01
Chr4 mRNA 4320857 4327149 4320857 ID=MsG0480018396.01.T01;Parent=MsG0480018396.01;Name=MsG0480018396.01.T01;_AED=0.49;_eAED=0.49;_QI=73|1|1|1|0.5|0.33|3|919|248
Chr4 exon 4320857 4321392 4320857 ID=MsG0480018396.01.T01:exon:1173;Parent=MsG0480018396.01.T01
Chr4 exon 4322268 4322552 4322268 ID=MsG0480018396.01.T01:exon:1174;Parent=MsG0480018396.01.T01
Chr4 exon 4326232 4327149 4326232 ID=MsG0480018396.01.T01:exon:1175;Parent=MsG0480018396.01.T01
Chr4 five_prime_UTR 4320857 4320929 4320857 ID=MsG0480018396.01.T01:five_prime_utr;Parent=MsG0480018396.01.T01
Chr4 CDS 4320930 4321392 4320930 ID=MsG0480018396.01.T01:cds;Parent=MsG0480018396.01.T01
Chr4 CDS 4322268 4322551 4322268 ID=MsG0480018396.01.T01:cds;Parent=MsG0480018396.01.T01
Chr4 three_prime_UTR 4322552 4322552 4322552 ID=MsG0480018396.01.T01:three_prime_utr;Parent=MsG0480018396.01.T01
Chr4 three_prime_UTR 4326232 4327149 4326232 ID=MsG0480018396.01.T01:three_prime_utr;Parent=MsG0480018396.01.T01
Gene Sequence

>MsG0480018396.01.T01

ATGGCGTTTTCATCTTCAATCACAACCATTCCACAAACCCTAACCTTCACTCCCTCTAACAAACTCTCACTCTCTTCTTCAACGTCGTCGTTTCATCTCTCATTTCCTTCATTTCAATCCAACTCCTTCAAAACCATCACCACCACCTCTCCACTAATCACACGCGCCCAAGCGCCACCTTCTCCCGTCACCACCACCGCCGCATCATCTTTTCACGGTCTCTGCTACGTTGTTGGTGATAACATCGACACCGATCAAATCATCCCTGCTGAGCATCTTACCTTAGTCCCTTCCAATCCTGATGAGTATCAGAAGCTTGGTTCTTTTGCCTTAATCGGACTTCCTGATTCGTACACTGTACGATTCGTTGAATCCGGTGAAACTAAAACGAAATACTCTATCATCATCGGTGGTGCTAATTTCGGATGCGGATCTTCTCGTGAACACGCTCCGGTCGCATTAGGTGCTTCTGGTGCTGCTGCTGTTGTGGCGGAATCATATGCAAGGATTTTTTTCCGGAACTCGGTGGCAACTGGTGAGGTGTATCCATTGGAGTCAGAGACGAGGTTGTGTGAGGAGTGTCGTACCGGAGATGTGGTGACGGTTGAGCTTGAGGAGAATCGGTTGATTAATCATACGACTGGAAAGGAGTATCAGTTGAAGCCGATTGGGGATGCTGGTCCAGTGATTGAGGCCGGTGGGATCTTTGCTTATGCTAGGAAGACTGGCATGATTCCTACTAGATGA
Protein sequence

>MsG0480018396.01.T01

MAFSSSITTIPQTLTFTPSNKLSLSSSTSSFHLSFPSFQSNSFKTITTTSPLITRAQAPPSPVTTTAASSFHGLCYVVGDNIDTDQIIPAEHLTLVPSNPDEYQKLGSFALIGLPDSYTVRFVESGETKTKYSIIIGGANFGCGSSREHAPVALGASGAAAVVAESYARIFFRNSVATGEVYPLESETRLCEECRTGDVVTVELEENRLINHTTGKEYQLKPIGDAGPVIEAGGIFAYARKTGMIPTR*