AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880041861.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880041861.01.T01 MTR_8g005295 87.184 515 38 2 1 490 1 512 0.0 915
MsG0880041861.01.T01 MTR_8g005285 82.558 516 48 2 1 491 1 499 0.0 862
MsG0880041861.01.T01 MTR_8g005325 48.671 489 182 12 19 490 38 474 1.76e-147 431
MsG0880041861.01.T01 MTR_8g005235 48.454 485 188 12 19 490 9 444 1.94e-143 419
MsG0880041861.01.T01 MTR_0209s0060 45.168 476 189 14 19 483 11 425 1.21e-118 355
MsG0880041861.01.T01 MTR_0209s0030 45.168 476 189 14 19 483 11 425 1.21e-118 355
MsG0880041861.01.T01 MTR_8g005265 44.025 477 196 13 36 489 27 455 3.50e-117 352
MsG0880041861.01.T01 MTR_8g006525 45.082 488 195 16 12 487 4 430 5.88e-117 351
MsG0880041861.01.T01 MTR_8g005225 41.765 510 223 13 1 488 1 458 2.98e-110 335
MsG0880041861.01.T01 MTR_4g112660 35.684 468 166 14 36 485 6 356 4.30e-71 231
MsG0880041861.01.T01 MTR_3g079390 32.983 476 251 17 17 478 20 441 2.76e-54 189
MsG0880041861.01.T01 MTR_6g010920 30.508 472 221 18 32 483 21 405 4.51e-53 184
MsG0880041861.01.T01 MTR_6g009590 29.701 468 234 16 22 472 7 396 2.78e-52 182
MsG0880041861.01.T01 MTR_6g011050 28.728 456 221 15 36 472 24 394 3.40e-49 174
MsG0880041861.01.T01 MTR_6g009610 29.103 457 233 13 29 472 18 396 3.90e-49 174
MsG0880041861.01.T01 MTR_6g011060 29.424 469 244 13 25 478 14 410 2.01e-48 172
MsG0880041861.01.T01 MTR_3g107590 28.970 466 219 15 34 471 24 405 1.41e-44 162
MsG0880041861.01.T01 MTR_0024s0080 29.638 442 227 12 38 472 27 391 2.34e-44 161
MsG0880041861.01.T01 MTR_6g010890 28.395 486 244 18 25 483 14 422 1.73e-42 156
MsG0880041861.01.T01 MTR_6g009170 27.917 480 235 18 22 471 7 405 1.27e-41 154
MsG0880041861.01.T01 MTR_6g010810 28.416 461 241 14 35 483 21 404 1.18e-40 151
MsG0880041861.01.T01 MTR_2g036320 26.258 457 255 13 38 480 69 457 1.62e-34 136
MsG0880041861.01.T01 MTR_2g041180 26.154 455 263 14 36 480 50 441 2.62e-33 132
MsG0880041861.01.T01 MTR_2g035640 30.403 273 152 5 218 478 94 340 4.78e-30 120
MsG0880041861.01.T01 MTR_5g086340 25.219 456 273 10 37 483 33 429 3.48e-29 120
MsG0880041861.01.T01 MTR_7g011980 33.846 195 105 3 291 483 166 338 1.48e-25 107
MsG0880041861.01.T01 MTR_7g011980 34.513 113 51 3 29 141 18 107 6.81e-12 67.4
MsG0880041861.01.T01 MTR_6g010850 28.499 393 193 15 109 489 33 349 6.17e-25 106
MsG0880041861.01.T01 MTR_6g009580 30.841 214 119 4 264 471 29 219 1.12e-21 94.4
MsG0880041861.01.T01 MTR_7g060310 27.966 236 141 3 253 478 263 479 2.86e-19 90.9
MsG0880041861.01.T01 MTR_7g059540 21.996 491 272 15 38 478 29 458 3.98e-19 90.5
MsG0880041861.01.T01 MTR_7g060260 30.814 172 99 2 293 463 251 403 6.81e-18 86.3
MsG0880041861.01.T01 MTR_7g059525 28.877 187 113 2 293 478 108 275 5.32e-17 81.6
MsG0880041861.01.T01 MTR_5g016570 32.164 171 91 2 295 463 356 503 1.02e-16 83.2
MsG0880041861.01.T01 MTR_5g016570 35.398 113 65 3 32 142 97 203 2.39e-12 69.7
MsG0880041861.01.T01 MTR_6g009600 32.593 135 67 2 293 426 23 134 1.33e-16 77.4
MsG0880041861.01.T01 MTR_7g059520 30.409 171 99 3 293 462 5 156 1.40e-16 78.2
MsG0880041861.01.T01 MTR_7g060080 32.432 148 95 2 338 480 42 189 1.52e-16 78.6
MsG0880041861.01.T01 MTR_5g087580 25.980 204 126 3 291 493 41 220 4.07e-16 77.8
MsG0880041861.01.T01 MTR_7g060320 34.146 123 80 1 342 463 319 441 3.57e-15 78.2
MsG0880041861.01.T01 MTR_7g060840 31.333 150 92 3 342 490 287 426 4.63e-15 77.8
MsG0880041861.01.T01 MTR_0182s0060 35.507 138 87 2 342 478 372 508 4.81e-15 77.8
MsG0880041861.01.T01 MTR_5g086260 27.805 205 118 6 293 493 136 314 4.91e-15 76.3
MsG0880041861.01.T01 MTR_7g059480 32.394 142 95 1 338 478 624 765 7.66e-15 77.8
MsG0880041861.01.T01 MTR_7g060020 33.803 142 90 3 342 480 291 431 1.05e-14 76.6
MsG0880041861.01.T01 MTR_7g059540 31.159 138 94 1 342 478 330 467 1.33e-14 76.3
MsG0880041861.01.T01 MTR_7g060115 21.720 465 270 14 53 480 44 451 7.99e-14 73.9
MsG0880041861.01.T01 MTR_8g042170 31.788 151 89 2 342 478 299 449 2.40e-13 72.4
MsG0880041861.01.T01 MTR_7g060160 33.333 147 84 5 342 480 263 403 3.89e-13 71.6
MsG0880041861.01.T01 MTR_7g446270 32.520 123 82 1 342 463 339 461 5.13e-13 71.6
MsG0880041861.01.T01 MTR_7g060220 26.840 231 140 4 242 463 203 413 5.29e-13 71.2
MsG0880041861.01.T01 MTR_2g036310 29.927 137 93 2 346 480 16 151 1.91e-12 65.9
MsG0880041861.01.T01 MTR_5g086230 33.065 124 76 2 37 158 29 147 3.35e-12 65.9
MsG0880041861.01.T01 MTR_4g009590 29.104 134 94 1 348 480 411 544 8.42e-12 67.8
MsG0880041861.01.T01 MTR_8g042830 22.707 229 142 5 275 493 216 419 1.38e-11 66.6
MsG0880041861.01.T01 MTR_7g059510 28.369 141 98 2 344 481 282 422 1.53e-11 66.6
MsG0880041861.01.T01 MTR_7g017620 30.075 133 91 2 346 477 399 530 3.78e-11 65.9
MsG0880041861.01.T01 MTR_4g009340 27.841 176 103 4 290 464 376 528 7.47e-11 65.1
MsG0880041861.01.T01 MTR_7g059810 34.959 123 78 2 342 463 300 421 9.93e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880041861.01.T01 AT2G44930 28.358 469 255 8 36 483 84 492 4.29e-46 168
MsG0880041861.01.T01 AT2G28580 28.092 477 241 11 36 483 41 444 1.51e-44 163
MsG0880041861.01.T01 AT2G28580 28.632 468 250 12 36 483 109 512 3.44e-44 163
MsG0880041861.01.T01 AT2G28580 28.092 477 241 11 36 483 123 526 4.57e-44 163
MsG0880041861.01.T01 AT3G60470 28.302 530 264 16 38 483 34 531 8.04e-44 162
MsG0880041861.01.T01 AT2G28580 28.326 466 237 10 36 483 109 495 9.68e-44 162
MsG0880041861.01.T01 AT2G28580 28.326 466 237 10 36 483 123 509 1.14e-43 162
MsG0880041861.01.T01 AT4G31980 26.049 453 235 11 36 471 293 662 2.24e-38 149
MsG0880041861.01.T01 AT1G67150 27.195 467 240 15 35 478 5 394 2.12e-33 131
MsG0880041861.01.T01 AT1G67150 27.195 467 240 15 35 478 5 394 2.12e-33 131
MsG0880041861.01.T01 AT1G67150 26.964 471 240 15 35 478 5 398 8.72e-33 129
MsG0880041861.01.T01 AT2G36430 23.810 441 257 12 36 463 45 419 3.12e-28 117
MsG0880041861.01.T01 AT3G47250 24.947 473 274 15 27 478 52 464 8.60e-26 110
MsG0880041861.01.T01 AT3G47250 24.947 473 274 15 27 478 52 464 8.60e-26 110
MsG0880041861.01.T01 AT3G47250 24.947 473 274 15 27 478 52 464 8.60e-26 110
MsG0880041861.01.T01 AT2G28580 26.601 406 196 11 36 412 123 455 1.08e-25 110
MsG0880041861.01.T01 AT3G47210 26.411 443 222 14 25 442 82 445 9.94e-23 101
MsG0880041861.01.T01 AT5G11290 36.585 123 71 4 24 146 22 137 1.92e-19 90.9
MsG0880041861.01.T01 AT5G11290 25.926 216 133 5 265 478 221 411 3.27e-15 78.2
MsG0880041861.01.T01 AT3G50150 31.383 188 104 2 295 480 331 495 2.06e-18 88.6
MsG0880041861.01.T01 AT3G50150 33.333 105 65 1 38 142 92 191 2.23e-11 66.6
MsG0880041861.01.T01 AT3G47200 23.789 454 275 13 25 463 35 432 2.41e-18 88.2
MsG0880041861.01.T01 AT3G47200 23.789 454 275 13 25 463 35 432 2.41e-18 88.2
MsG0880041861.01.T01 AT1G67150 29.947 187 107 3 293 478 188 351 2.48e-18 87.0
MsG0880041861.01.T01 AT1G67150 34.167 120 67 2 35 144 5 122 2.59e-11 65.9
MsG0880041861.01.T01 AT3G50160 27.679 224 133 3 261 478 285 485 8.99e-17 83.2
MsG0880041861.01.T01 AT3G50160 34.234 111 67 2 32 142 100 204 5.89e-13 71.6
MsG0880041861.01.T01 AT3G50140 28.723 188 109 3 295 480 361 525 1.32e-16 82.8
MsG0880041861.01.T01 AT3G50140 34.286 105 63 2 38 142 115 213 2.63e-11 66.2
MsG0880041861.01.T01 AT1G65985 37.903 124 76 1 343 465 304 427 1.72e-16 82.4
MsG0880041861.01.T01 AT1G65985 36.000 125 58 2 38 144 16 136 3.87e-15 78.2
MsG0880041861.01.T01 AT1G65985 37.903 124 76 1 343 465 304 427 1.72e-16 82.4
MsG0880041861.01.T01 AT1G65985 36.000 125 58 2 38 144 16 136 3.87e-15 78.2
MsG0880041861.01.T01 AT3G50170 30.108 186 105 2 295 478 361 523 5.00e-16 81.3
MsG0880041861.01.T01 AT3G50170 30.000 150 89 3 2 141 69 212 2.31e-14 75.9
MsG0880041861.01.T01 AT3G50120 30.108 186 105 2 295 478 353 515 7.09e-16 80.5
MsG0880041861.01.T01 AT3G50120 34.286 105 63 2 38 142 105 203 1.38e-11 67.4
MsG0880041861.01.T01 AT5G11290 25.926 216 133 5 265 478 152 342 3.74e-15 77.4
MsG0880041861.01.T01 AT3G50170 30.000 150 89 3 2 141 69 212 2.57e-14 75.5
MsG0880041861.01.T01 AT5G22550 32.877 146 90 6 2 143 9 150 1.22e-13 73.6
MsG0880041861.01.T01 AT3G50130 29.240 171 96 2 295 463 386 533 2.23e-13 72.8
MsG0880041861.01.T01 AT3G50130 36.190 105 61 2 38 142 141 239 1.80e-11 67.0
MsG0880041861.01.T01 AT5G22540 32.727 110 67 3 36 143 31 135 4.42e-13 71.6
MsG0880041861.01.T01 AT3G02645 32.203 118 79 1 348 464 380 497 7.04e-13 71.2
MsG0880041861.01.T01 AT3G50180 27.225 191 110 3 294 478 405 572 2.63e-12 69.7
MsG0880041861.01.T01 AT3G50180 35.965 114 61 3 32 142 174 278 2.19e-11 66.6
MsG0880041861.01.T01 AT3G50190 28.042 189 108 4 295 478 312 477 1.25e-11 67.4
MsG0880041861.01.T01 AT3G50150 33.333 105 65 1 38 142 92 191 3.29e-11 65.9
MsG0880041861.01.T01 AT3G50140 34.286 105 63 2 38 142 115 213 3.35e-11 65.5
MsG0880041861.01.T01 AT3G44700 26.389 144 99 4 5 143 16 157 7.48e-11 62.4

Find 55 sgRNAs with CRISPR-Local

Find 82 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAAGCATTATCAGAATATT+TGG 0.154201 8:+383797 MsG0880041861.01.T01:CDS
CTTGATACTGACATTGTTCT+AGG 0.157660 8:-383576 None:intergenic
ATTAACTTTGTTACTGTTCT+TGG 0.162375 8:-383352 None:intergenic
ACCATTTCAAAGCGCGTCTA+AGG 0.318480 8:+383497 MsG0880041861.01.T01:CDS
ACGTGAAACTAAGCTTGTTT+TGG 0.326591 8:+383117 MsG0880041861.01.T01:CDS
GAAACATAATTGCATATATA+AGG 0.329067 8:-383604 None:intergenic
GACTTTGTAGTTCTTGATCA+TGG 0.348123 8:-382688 None:intergenic
TCTTTATTTCCAAGGTGAAT+TGG 0.350401 8:-382588 None:intergenic
ATCAAATCAGTGAAATGTTT+AGG 0.353279 8:-383265 None:intergenic
CTGCTAAACTTAACTCTTCA+AGG 0.360388 8:-382485 None:intergenic
TTACCTTCCAGCTGATTTAA+CGG 0.361070 8:+383297 MsG0880041861.01.T01:CDS
AACATTTCACTGATTTGATA+AGG 0.390830 8:+383269 MsG0880041861.01.T01:CDS
ACTCCTCAATTAATCTCAAT+TGG 0.392658 8:+382564 MsG0880041861.01.T01:CDS
GTAACAAAGTTAATAGATTC+TGG 0.396787 8:+383361 MsG0880041861.01.T01:CDS
AAGAAACCGTTCATGGAAAT+CGG 0.400354 8:+382833 MsG0880041861.01.T01:CDS
GAAGTGGCAGTGCTTGTTAA+TGG 0.401978 8:+383715 MsG0880041861.01.T01:CDS
ATAGACGCTCATAGAAGAAA+TGG 0.406927 8:-382647 None:intergenic
TCCTTAGACGCGCTTTGAAA+TGG 0.415205 8:-383498 None:intergenic
ACAAGTTGATGTTGATTTGT+TGG 0.429548 8:+383651 MsG0880041861.01.T01:CDS
TCTAAATCCGTTAAATCAGC+TGG 0.442093 8:-383304 None:intergenic
AGCAATAACCATAGGTTTCA+AGG 0.443493 8:+383241 MsG0880041861.01.T01:CDS
CAGAGAAAATAACTCAGAAA+TGG 0.447228 8:-383442 None:intergenic
AATCAACATCAACTTGTGTA+TGG 0.449318 8:-383645 None:intergenic
ATCTGAAACTGAATATGAAA+TGG 0.454211 8:+382437 MsG0880041861.01.T01:CDS
GTTTAGGACCTTGAAACCTA+TGG 0.455366 8:-383249 None:intergenic
AGAGCTAGTTCTACTTTGGT+TGG 0.457619 8:+383868 MsG0880041861.01.T01:CDS
GGAAGTGATTGTGCATGAAA+TGG 0.461128 8:+383681 MsG0880041861.01.T01:CDS
GGACCAATTGAGATTAATTG+AGG 0.464532 8:-382567 None:intergenic
TTGGAGAGCTAGTTCTACTT+TGG 0.466290 8:+383864 MsG0880041861.01.T01:CDS
AGTGGCTTAATTGGTGATGT+TGG 0.477221 8:+383172 MsG0880041861.01.T01:CDS
GGCTTAATTGGTGATGTTGG+TGG 0.479529 8:+383175 MsG0880041861.01.T01:CDS
GTTGAAGTTCTTTATTTCCA+AGG 0.495312 8:-382596 None:intergenic
TCTAAGGATTCCGCAGTTGA+AGG 0.499213 8:+383513 MsG0880041861.01.T01:CDS
AGCAGATTGTAGCATCTACA+AGG 0.504878 8:+382503 MsG0880041861.01.T01:CDS
TTGATACTGACATTGTTCTA+GGG 0.522905 8:-383575 None:intergenic
ATGTTTCAATCTAAATGACT+TGG 0.523292 8:-382889 None:intergenic
GAAGTGATTGTGCATGAAAT+GGG 0.523677 8:+383682 MsG0880041861.01.T01:CDS
TTAACGGATTTAGAAAAGAG+TGG 0.543465 8:+383313 MsG0880041861.01.T01:CDS
CACCAACCACAATGCAGCCA+TGG 0.546124 8:-383827 None:intergenic
TGGTTCAAACATGAAAATGA+AGG 0.548134 8:-383478 None:intergenic
TTAATTGGTGATGTTGGTGG+TGG 0.553225 8:+383178 MsG0880041861.01.T01:CDS
TCAATTGGTCCAATTCACCT+TGG 0.558480 8:+382579 MsG0880041861.01.T01:CDS
ACCACAATGCAGCCATGGTA+CGG 0.571593 8:-383822 None:intergenic
ATGTATCCGATTTCCATGAA+CGG 0.580945 8:-382839 None:intergenic
TGGTCTTTGTAAACATGTTG+TGG 0.582048 8:+383735 MsG0880041861.01.T01:CDS
AATCTATGAGCAATAACCAT+AGG 0.583238 8:+383233 MsG0880041861.01.T01:CDS
GACATTGTTCTAGGGCAATG+AGG 0.593451 8:-383567 None:intergenic
TGTTGATTTGTTGGTCGAGA+AGG 0.609668 8:+383660 MsG0880041861.01.T01:CDS
TACCATGGCTGCATTGTGGT+TGG 0.611964 8:+383825 MsG0880041861.01.T01:CDS
AATCCGTTAAATCAGCTGGA+AGG 0.622325 8:-383300 None:intergenic
AATGGGAAGTGATAAAGAAG+TGG 0.638138 8:+383699 MsG0880041861.01.T01:CDS
GAATATTTGGAACCGTACCA+TGG 0.643141 8:+383810 MsG0880041861.01.T01:CDS
TTTCTGGTAGAAGAGAACTC+TGG 0.666213 8:-383935 None:intergenic
GTGTGATCAACCTTCAACTG+CGG 0.710202 8:-383523 None:intergenic
ACCGTACCATGGCTGCATTG+TGG 0.722473 8:+383821 MsG0880041861.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAGCATTATCAGAATATT+TGG + Chr8:383797-383816 MsG0880041861.01.T01:CDS 20.0%
!! GAAACATAATTGCATATATA+AGG - Chr8:383607-383626 None:intergenic 20.0%
!!! AAATTTTTCTTTGCTTATGT+TGG - Chr8:382766-382785 None:intergenic 20.0%
!!! AAGAAATATTATTTTGTGAG+TGG + Chr8:383154-383173 MsG0880041861.01.T01:CDS 20.0%
!!! AATTTTTCTTTGCTTATGTT+GGG - Chr8:382765-382784 None:intergenic 20.0%
!!! TTTATCAGAATGTTTTTTCT+TGG - Chr8:383215-383234 None:intergenic 20.0%
! ATCAAATCAGTGAAATGTTT+AGG - Chr8:383268-383287 None:intergenic 25.0%
! ATGTTTCAATCTAAATGACT+TGG - Chr8:382892-382911 None:intergenic 25.0%
! ATTAACTTTGTTACTGTTCT+TGG - Chr8:383355-383374 None:intergenic 25.0%
! CATAAGCAAAGAAAAATTTG+TGG + Chr8:382767-382786 MsG0880041861.01.T01:CDS 25.0%
! GTAACAAAGTTAATAGATTC+TGG + Chr8:383361-383380 MsG0880041861.01.T01:CDS 25.0%
!! ATCTGAAACTGAATATGAAA+TGG + Chr8:382437-382456 MsG0880041861.01.T01:CDS 25.0%
!! ATTTGTGGAAACAATTTTGT+TGG + Chr8:382782-382801 MsG0880041861.01.T01:CDS 25.0%
!! CAAGATCAAGAAAACTTTTA+TGG - Chr8:383054-383073 None:intergenic 25.0%
!!! AACATTTCACTGATTTGATA+AGG + Chr8:383269-383288 MsG0880041861.01.T01:CDS 25.0%
AAGATTCATCAGCACAAAAA+AGG - Chr8:382993-383012 None:intergenic 30.0%
AATCAACATCAACTTGTGTA+TGG - Chr8:383648-383667 None:intergenic 30.0%
AATCTATGAGCAATAACCAT+AGG + Chr8:383233-383252 MsG0880041861.01.T01:CDS 30.0%
ACTCCTCAATTAATCTCAAT+TGG + Chr8:382564-382583 MsG0880041861.01.T01:CDS 30.0%
ATTACATTCTAACACAAGCT+TGG + Chr8:382919-382938 MsG0880041861.01.T01:intron 30.0%
CAATGCAACAACACAAAAAA+AGG + Chr8:382619-382638 MsG0880041861.01.T01:CDS 30.0%
CAGAGAAAATAACTCAGAAA+TGG - Chr8:383445-383464 None:intergenic 30.0%
TGGTTCAAACATGAAAATGA+AGG - Chr8:383481-383500 None:intergenic 30.0%
TTGATACTGACATTGTTCTA+GGG - Chr8:383578-383597 None:intergenic 30.0%
! ACACAACAGAATGTGTTTTA+AGG + Chr8:383542-383561 MsG0880041861.01.T01:CDS 30.0%
! GTTGAAGTTCTTTATTTCCA+AGG - Chr8:382599-382618 None:intergenic 30.0%
! TATTTTGTGAGTGGCTTAAT+TGG + Chr8:383163-383182 MsG0880041861.01.T01:CDS 30.0%
! TCTTTATTTCCAAGGTGAAT+TGG - Chr8:382591-382610 None:intergenic 30.0%
! TTTTGTTAAGAAACCGTTCA+TGG + Chr8:382826-382845 MsG0880041861.01.T01:CDS 30.0%
!! AAGCTTCTTGTTTCACTTTT+CGG - Chr8:382542-382561 None:intergenic 30.0%
!! ACAAGTTGATGTTGATTTGT+TGG + Chr8:383651-383670 MsG0880041861.01.T01:CDS 30.0%
!! TTAACGGATTTAGAAAAGAG+TGG + Chr8:383313-383332 MsG0880041861.01.T01:CDS 30.0%
!!! CTTTTTTTGTGTTGTTGCAT+TGG - Chr8:382621-382640 None:intergenic 30.0%
AAGAAACCGTTCATGGAAAT+CGG + Chr8:382833-382852 MsG0880041861.01.T01:CDS 35.0%
AATGGGAAGTGATAAAGAAG+TGG + Chr8:383699-383718 MsG0880041861.01.T01:CDS 35.0%
AGCAATAACCATAGGTTTCA+AGG + Chr8:383241-383260 MsG0880041861.01.T01:CDS 35.0%
ATAGACGCTCATAGAAGAAA+TGG - Chr8:382650-382669 None:intergenic 35.0%
ATGTATCCGATTTCCATGAA+CGG - Chr8:382842-382861 None:intergenic 35.0%
CTGCTAAACTTAACTCTTCA+AGG - Chr8:382488-382507 None:intergenic 35.0%
CTTGATACTGACATTGTTCT+AGG - Chr8:383579-383598 None:intergenic 35.0%
GAAGTGATTGTGCATGAAAT+GGG + Chr8:383682-383701 MsG0880041861.01.T01:CDS 35.0%
GACTTTGTAGTTCTTGATCA+TGG - Chr8:382691-382710 None:intergenic 35.0%
GGACCAATTGAGATTAATTG+AGG - Chr8:382570-382589 None:intergenic 35.0%
TCTAAATCCGTTAAATCAGC+TGG - Chr8:383307-383326 None:intergenic 35.0%
TGGTCTTTGTAAACATGTTG+TGG + Chr8:383735-383754 MsG0880041861.01.T01:CDS 35.0%
! TTACCTTCCAGCTGATTTAA+CGG + Chr8:383297-383316 MsG0880041861.01.T01:CDS 35.0%
!! ACGTGAAACTAAGCTTGTTT+TGG + Chr8:383117-383136 MsG0880041861.01.T01:CDS 35.0%
!! CTGAGTTATTTTCTCTGCTT+AGG + Chr8:383448-383467 MsG0880041861.01.T01:CDS 35.0%
!! TGGTGTATTTTAGAGATGCT+TGG + Chr8:383845-383864 MsG0880041861.01.T01:CDS 35.0%
!!! CTTCTTTTTTGTCGTCGTTA+GGG - Chr8:383030-383049 None:intergenic 35.0%
!!! GTGAGTTTTGAGAAAGTTGT+GGG + Chr8:383385-383404 MsG0880041861.01.T01:CDS 35.0%
!!! TCTTCTTTTTTGTCGTCGTT+AGG - Chr8:383031-383050 None:intergenic 35.0%
!!! TGAGTTTTGAGAAAGTTGTG+GGG + Chr8:383386-383405 MsG0880041861.01.T01:CDS 35.0%
!!! TGTGAGTTTTGAGAAAGTTG+TGG + Chr8:383384-383403 MsG0880041861.01.T01:CDS 35.0%
AATCCGTTAAATCAGCTGGA+AGG - Chr8:383303-383322 None:intergenic 40.0%
AGCAGATTGTAGCATCTACA+AGG + Chr8:382503-382522 MsG0880041861.01.T01:CDS 40.0%
GGAAGTGATTGTGCATGAAA+TGG + Chr8:383681-383700 MsG0880041861.01.T01:CDS 40.0%
TCAATTGGTCCAATTCACCT+TGG + Chr8:382579-382598 MsG0880041861.01.T01:CDS 40.0%
! CACAAGGGACTTGATTTTGT+TGG + Chr8:382956-382975 MsG0880041861.01.T01:intron 40.0%
! GAATATTTGGAACCGTACCA+TGG + Chr8:383810-383829 MsG0880041861.01.T01:CDS 40.0%
! GTTTAGGACCTTGAAACCTA+TGG - Chr8:383252-383271 None:intergenic 40.0%
! TTTCTGGTAGAAGAGAACTC+TGG - Chr8:383938-383957 None:intergenic 40.0%
!! AGAGCTAGTTCTACTTTGGT+TGG + Chr8:383868-383887 MsG0880041861.01.T01:CDS 40.0%
!! AGTGGCTTAATTGGTGATGT+TGG + Chr8:383172-383191 MsG0880041861.01.T01:CDS 40.0%
!! TGTTGATTTGTTGGTCGAGA+AGG + Chr8:383660-383679 MsG0880041861.01.T01:CDS 40.0%
!! TTAATTGGTGATGTTGGTGG+TGG + Chr8:383178-383197 MsG0880041861.01.T01:CDS 40.0%
!! TTCACTTTTCGGAGATTGTG+AGG - Chr8:382531-382550 None:intergenic 40.0%
!! TTGGAGAGCTAGTTCTACTT+TGG + Chr8:383864-383883 MsG0880041861.01.T01:CDS 40.0%
!!! GTTGGATGCTGTTTTCATCA+TGG + Chr8:382800-382819 MsG0880041861.01.T01:CDS 40.0%
ACCATTTCAAAGCGCGTCTA+AGG + Chr8:383497-383516 MsG0880041861.01.T01:CDS 45.0%
GTGTGATCAACCTTCAACTG+CGG - Chr8:383526-383545 None:intergenic 45.0%
TCTAAGGATTCCGCAGTTGA+AGG + Chr8:383513-383532 MsG0880041861.01.T01:CDS 45.0%
! GAAGTGGCAGTGCTTGTTAA+TGG + Chr8:383715-383734 MsG0880041861.01.T01:CDS 45.0%
!! GACATTGTTCTAGGGCAATG+AGG - Chr8:383570-383589 None:intergenic 45.0%
!! GCTCAGCAAAAGCATCACAA+GGG + Chr8:382941-382960 MsG0880041861.01.T01:intron 45.0%
!! GGCTTAATTGGTGATGTTGG+TGG + Chr8:383175-383194 MsG0880041861.01.T01:CDS 45.0%
!! TCCTTAGACGCGCTTTGAAA+TGG - Chr8:383501-383520 None:intergenic 45.0%
ACCACAATGCAGCCATGGTA+CGG - Chr8:383825-383844 None:intergenic 50.0%
TACCATGGCTGCATTGTGGT+TGG + Chr8:383825-383844 MsG0880041861.01.T01:CDS 50.0%
!! GGCTCAGCAAAAGCATCACA+AGG + Chr8:382940-382959 MsG0880041861.01.T01:intron 50.0%
ACCGTACCATGGCTGCATTG+TGG + Chr8:383821-383840 MsG0880041861.01.T01:CDS 55.0%
CACCAACCACAATGCAGCCA+TGG - Chr8:383830-383849 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
Chr8 gene 382405 383972 382405 ID=MsG0880041861.01;Name=MsG0880041861.01
Chr8 mRNA 382405 383972 382405 ID=MsG0880041861.01.T01;Parent=MsG0880041861.01;Name=MsG0880041861.01.T01;_AED=0.49;_eAED=0.49;_QI=0|0|0|1|1|1|2|0|497
Chr8 exon 382405 382912 382405 ID=MsG0880041861.01.T01:exon:245;Parent=MsG0880041861.01.T01
Chr8 exon 382987 383972 382987 ID=MsG0880041861.01.T01:exon:244;Parent=MsG0880041861.01.T01
Chr8 CDS 382405 382912 382405 ID=MsG0880041861.01.T01:cds;Parent=MsG0880041861.01.T01
Chr8 CDS 382987 383972 382987 ID=MsG0880041861.01.T01:cds;Parent=MsG0880041861.01.T01
Gene Sequence

>MsG0880041861.01.T01

ATGGCACATGCTAATACTTCTGTTGATGCTTTATCTGAAACTGAATATGAAATGGTGAAACACATCATTGACGTTGAAGTCCTTGAAGAGTTAAGTTTAGCAGATTGTAGCATCTACAAGGTTCCTCACAATCTCCGAAAAGTGAAACAAGAAGCTTACACTCCTCAATTAATCTCAATTGGTCCAATTCACCTTGGAAATAAAGAACTTCAACCAATGCAACAACACAAAAAAAGGTATTTCCATTTCTTCTATGAGCGTCTATCTCAATTCAATCAACAATCCATGATCAAGAACTACAAAGTCTATCTTGAAAACAAAGAACAAGAAATAAGAAAATGTTATGCAGAGAAATTTCCCAACATAAGCAAAGAAAAATTTGTGGAAACAATTTTGTTGGATGCTGTTTTCATCATGGAGCTTTTGTTAAGAAACCGTTCATGGAAATCGGATACATCAAAACATGAACATGAATACAAGCAATCCAAGTCATTTAGATTGAAACATAATACCTTTTTTGTGCTGATGAATCTTTACGATACTGTCGTCCCTAACGACGACAAAAAAGAAGACCATAAAAGTTTTCTTGATCTTGCACTTGAGTATTTTGCATTCTACGACACTCAGAAATCGTCATCACGTGAAACTAAGCTTGTTTTGGATAAGAATCAGACAAAGAAATATTATTTTGTGAGTGGCTTAATTGGTGATGTTGGTGGTGGTAATTCAGTTTCCAAGAAAAAACATTCTGATAAATCTATGAGCAATAACCATAGGTTTCAAGGTCCTAAACATTTCACTGATTTGATAAGGTTTTTTTACCTTCCAGCTGATTTAACGGATTTAGAAAAGAGTGGTTGTTCTCATACTTTTCCAAGAACAGTAACAAAGTTAATAGATTCTGGTGTGAGTTTTGAGAAAGTTGTGGGGAGAAGATTGCTAGAAATAACATTTGAGAAGAAACCATTTCTGAGTTATTTTCTCTGCTTAGGTTGTTTACCTTCATTTTCATGTTTGAACCATTTCAAAGCGCGTCTAAGGATTCCGCAGTTGAAGGTTGATCACACAACAGAATGTGTTTTAAGGAACCTCATTGCCCTAGAACAATGTCAGTATCAAGAACAACCTTATATATGCAATTATGTTTCACTTGTTGATTCTCTTATCCATACACAAGTTGATGTTGATTTGTTGGTCGAGAAGGAAGTGATTGTGCATGAAATGGGAAGTGATAAAGAAGTGGCAGTGCTTGTTAATGGTCTTTGTAAACATGTTGTGGTGAATTCAACTTGTTACTATGATATTATTAATGAGCTTAATAAGCATTATCAGAATATTTGGAACCGTACCATGGCTGCATTGTGGTTGGTGTATTTTAGAGATGCTTGGAGAGCTAGTTCTACTTTGGTTGGAATTGCTTTTCTTGTTTACACAGCATTCAACTTTGTACGTCTTGCCAGAGTTCTCTTCTACCAGAAACTTAAAAATGTATAA

Protein sequence

>MsG0880041861.01.T01

MAHANTSVDALSETEYEMVKHIIDVEVLEELSLADCSIYKVPHNLRKVKQEAYTPQLISIGPIHLGNKELQPMQQHKKRYFHFFYERLSQFNQQSMIKNYKVYLENKEQEIRKCYAEKFPNISKEKFVETILLDAVFIMELLLRNRSWKSDTSKHEHEYKQSKSFRLKHNTFFVLMNLYDTVVPNDDKKEDHKSFLDLALEYFAFYDTQKSSSRETKLVLDKNQTKKYYFVSGLIGDVGGGNSVSKKKHSDKSMSNNHRFQGPKHFTDLIRFFYLPADLTDLEKSGCSHTFPRTVTKLIDSGVSFEKVVGRRLLEITFEKKPFLSYFLCLGCLPSFSCLNHFKARLRIPQLKVDHTTECVLRNLIALEQCQYQEQPYICNYVSLVDSLIHTQVDVDLLVEKEVIVHEMGSDKEVAVLVNGLCKHVVVNSTCYYDIINELNKHYQNIWNRTMAALWLVYFRDAWRASSTLVGIAFLVYTAFNFVRLARVLFYQKLKNV*