Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880043037.01.T01 | XP_013444666.1 | 93.902 | 82 | 5 | 0 | 1 | 82 | 396 | 477 | 7.95E-44 | 159 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880043037.01.T01 | Q9AR73 | 64.103 | 78 | 28 | 0 | 1 | 78 | 387 | 464 | 3.73E-26 | 103 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880043037.01.T01 | A0A072TN95 | 93.902 | 82 | 5 | 0 | 1 | 82 | 396 | 477 | 3.80e-44 | 159 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048400.01 | MsG0880043037.01 | 0.807106 | 5.944914e-50 | 3.282559e-47 |
| MsG0080048660.01 | MsG0880043037.01 | 0.830833 | 2.349947e-55 | 2.504886e-52 |
| MsG0080049002.01 | MsG0880043037.01 | 0.800887 | 1.167415e-48 | 5.498342e-46 |
| MsG0180000241.01 | MsG0880043037.01 | 0.807215 | 5.636164e-50 | 3.121103e-47 |
| MsG0180000782.01 | MsG0880043037.01 | 0.809756 | 1.617002e-50 | 9.574807e-48 |
| MsG0180000784.01 | MsG0880043037.01 | 0.825619 | 4.246048e-54 | 3.890254e-51 |
| MsG0180000814.01 | MsG0880043037.01 | 0.809326 | 2.000209e-50 | 1.170886e-47 |
| MsG0180001100.01 | MsG0880043037.01 | 0.802277 | 6.055361e-49 | 2.954115e-46 |
| MsG0180001105.01 | MsG0880043037.01 | 0.814719 | 1.334882e-51 | 9.025315e-49 |
| MsG0180001610.01 | MsG0880043037.01 | 0.837231 | 5.874112e-57 | 7.581302e-54 |
| MsG0180003741.01 | MsG0880043037.01 | 0.808549 | 2.933308e-50 | 1.682061e-47 |
| MsG0180003885.01 | MsG0880043037.01 | 0.810358 | 1.199485e-50 | 7.214978e-48 |
| MsG0180003951.01 | MsG0880043037.01 | 0.815039 | 1.133579e-51 | 7.730724e-49 |
| MsG0180004246.01 | MsG0880043037.01 | 0.825398 | 4.791974e-54 | 4.362700e-51 |
| MsG0180004466.01 | MsG0880043037.01 | 0.808957 | 2.399656e-50 | 1.390851e-47 |
| MsG0180005113.01 | MsG0880043037.01 | 0.816123 | 6.504516e-52 | 4.569436e-49 |
| MsG0180005153.01 | MsG0880043037.01 | 0.809556 | 1.784978e-50 | 1.051314e-47 |
| MsG0780040888.01 | MsG0880043037.01 | 0.839950 | 1.165982e-57 | 1.636010e-54 |
| MsG0780041074.01 | MsG0880043037.01 | 0.846305 | 2.360708e-59 | 4.045479e-56 |
| MsG0780041262.01 | MsG0880043037.01 | 0.823653 | 1.233354e-53 | 1.068556e-50 |
| MsG0780041468.01 | MsG0880043037.01 | 0.812752 | 3.620319e-51 | 2.320921e-48 |
| MsG0780041673.01 | MsG0880043037.01 | 0.826169 | 3.143338e-54 | 2.925403e-51 |
| MsG0880041861.01 | MsG0880043037.01 | 0.838020 | 3.684125e-57 | 4.872619e-54 |
| MsG0880041864.01 | MsG0880043037.01 | 0.849380 | 3.355433e-60 | 6.349431e-57 |
| MsG0880043037.01 | MsG0880043157.01 | 0.829672 | 4.514605e-55 | 4.652593e-52 |
| MsG0880043037.01 | MsG0880043937.01 | 0.807604 | 4.660709e-50 | 2.607039e-47 |
| MsG0880043037.01 | MsG0880043941.01 | 0.806399 | 8.383987e-50 | 4.545909e-47 |
| MsG0880043037.01 | MsG0880044043.01 | 0.808565 | 2.909065e-50 | 1.668860e-47 |
| MsG0880043037.01 | MsG0880045668.01 | 0.831697 | 1.440929e-55 | 1.575848e-52 |
| MsG0880043037.01 | MsG0880045722.01 | 0.817761 | 2.789009e-52 | 2.049218e-49 |
| MsG0880043037.01 | MsG0880045992.01 | 0.811749 | 5.990252e-51 | 3.738614e-48 |
| MsG0880043037.01 | MsG0880046699.01 | 0.801831 | 7.477122e-49 | 3.606574e-46 |
| MsG0880043037.01 | MsG0880046815.01 | 0.813346 | 2.681692e-51 | 1.746916e-48 |
| MsG0880043037.01 | MsG0880047394.01 | 0.819473 | 1.140536e-52 | 8.785585e-50 |
| MsG0880043037.01 | MsG0880047538.01 | 0.823950 | 1.050915e-53 | 9.181078e-51 |
| MsG0880043037.01 | MsG0880047657.01 | 0.839795 | 1.279341e-57 | 1.786259e-54 |
| MsG0280010736.01 | MsG0880043037.01 | 0.807938 | 3.958887e-50 | 2.233870e-47 |
| MsG0280011255.01 | MsG0880043037.01 | 0.813178 | 2.918772e-51 | 1.892525e-48 |
| MsG0280011454.01 | MsG0880043037.01 | 0.803094 | 4.106637e-49 | 2.045431e-46 |
| MsG0380011496.01 | MsG0880043037.01 | 0.812467 | 4.178149e-51 | 2.658795e-48 |
| MsG0380011501.01 | MsG0880043037.01 | 0.807403 | 5.140761e-50 | 2.860802e-47 |
| MsG0380014097.01 | MsG0880043037.01 | 0.802031 | 6.802203e-49 | 3.297674e-46 |
| MsG0380014103.01 | MsG0880043037.01 | 0.837108 | 6.314612e-57 | 8.119720e-54 |
| MsG0680030908.01 | MsG0880043037.01 | 0.801944 | 7.089931e-49 | 3.429437e-46 |
| MsG0680031263.01 | MsG0880043037.01 | 0.800467 | 1.421770e-48 | 6.624823e-46 |
| MsG0680031264.01 | MsG0880043037.01 | 0.807107 | 5.941368e-50 | 3.280718e-47 |
| MsG0680031621.01 | MsG0880043037.01 | 0.822641 | 2.125164e-53 | 1.789187e-50 |
| MsG0680033431.01 | MsG0880043037.01 | 0.815249 | 1.018273e-51 | 6.983822e-49 |
| MsG0680034230.01 | MsG0880043037.01 | 0.812407 | 4.305071e-51 | 2.735152e-48 |
| MsG0680034767.01 | MsG0880043037.01 | 0.822428 | 2.381961e-53 | 1.993228e-50 |
| MsG0480018584.01 | MsG0880043037.01 | 0.811372 | 7.237073e-51 | 4.471920e-48 |
| MsG0480018653.01 | MsG0880043037.01 | 0.830235 | 3.291714e-55 | 3.448006e-52 |
| MsG0480018985.01 | MsG0880043037.01 | 0.803640 | 3.164990e-49 | 1.598768e-46 |
| MsG0480019711.01 | MsG0880043037.01 | 0.830679 | 2.564205e-55 | 2.720882e-52 |
| MsG0480020935.01 | MsG0880043037.01 | -0.823495 | 1.343420e-53 | 1.158629e-50 |
| MsG0480021060.01 | MsG0880043037.01 | 0.832283 | 1.032624e-55 | 1.148747e-52 |
| MsG0480021356.01 | MsG0880043037.01 | 0.805634 | 1.214531e-49 | 6.458000e-47 |
| MsG0480022491.01 | MsG0880043037.01 | -0.801051 | 1.080461e-48 | 5.110062e-46 |
| MsG0480022624.01 | MsG0880043037.01 | 0.814526 | 1.472989e-51 | 9.907632e-49 |
| MsG0480024022.01 | MsG0880043037.01 | 0.809662 | 1.694033e-50 | 1.000595e-47 |
| MsG0580024045.01 | MsG0880043037.01 | 0.806871 | 6.665313e-50 | 3.658189e-47 |
| MsG0580024790.01 | MsG0880043037.01 | -0.832266 | 1.042892e-55 | 1.159557e-52 |
| MsG0580024997.01 | MsG0880043037.01 | 0.825185 | 5.378784e-54 | 4.867933e-51 |
| MsG0580025407.01 | MsG0880043037.01 | -0.852757 | 3.743271e-61 | 7.902646e-58 |
| MsG0580025607.01 | MsG0880043037.01 | 0.808263 | 3.374510e-50 | 1.920737e-47 |
| MsG0580025612.01 | MsG0880043037.01 | 0.827256 | 1.730208e-54 | 1.661587e-51 |
| MsG0580025661.01 | MsG0880043037.01 | 0.802814 | 4.692537e-49 | 2.320910e-46 |
| MsG0580025668.01 | MsG0880043037.01 | 0.806021 | 1.007013e-49 | 5.408124e-47 |
| MsG0580025821.01 | MsG0880043037.01 | 0.819397 | 1.186905e-52 | 9.122768e-50 |
| MsG0580025987.01 | MsG0880043037.01 | 0.802041 | 6.772219e-49 | 3.283913e-46 |
| MsG0380015277.01 | MsG0880043037.01 | 0.828701 | 7.767485e-55 | 7.779667e-52 |
| MsG0380015875.01 | MsG0880043037.01 | 0.812893 | 3.370254e-51 | 2.168697e-48 |
| MsG0380016294.01 | MsG0880043037.01 | 0.802589 | 5.222022e-49 | 2.567884e-46 |
| MsG0380016864.01 | MsG0880043037.01 | 0.811443 | 6.985081e-51 | 4.324491e-48 |
| MsG0380017087.01 | MsG0880043037.01 | 0.805127 | 1.550978e-49 | 8.140381e-47 |
| MsG0380017202.01 | MsG0880043037.01 | 0.822983 | 1.768904e-53 | 1.503696e-50 |
| MsG0380017293.01 | MsG0880043037.01 | 0.812951 | 3.273558e-51 | 2.109616e-48 |
| MsG0380017931.01 | MsG0880043037.01 | 0.811943 | 5.437458e-51 | 3.411090e-48 |
| MsG0480018396.01 | MsG0880043037.01 | 0.822938 | 1.812017e-53 | 1.538395e-50 |
| MsG0580026159.01 | MsG0880043037.01 | -0.806994 | 6.276893e-50 | 3.455920e-47 |
| MsG0580026733.01 | MsG0880043037.01 | 0.809646 | 1.707151e-50 | 1.007936e-47 |
| MsG0580027394.01 | MsG0880043037.01 | 0.803989 | 2.679315e-49 | 1.365679e-46 |
| MsG0580027925.01 | MsG0880043037.01 | 0.828395 | 9.205889e-55 | 9.139456e-52 |
| MsG0580028428.01 | MsG0880043037.01 | 0.811808 | 5.817674e-51 | 3.636427e-48 |
| MsG0580029236.01 | MsG0880043037.01 | 0.831929 | 1.263462e-55 | 1.391308e-52 |
| MsG0580030088.01 | MsG0880043037.01 | 0.808894 | 2.474610e-50 | 1.431872e-47 |
| MsG0680030328.01 | MsG0880043037.01 | 0.813353 | 2.672713e-51 | 1.741387e-48 |
| MsG0680030329.01 | MsG0880043037.01 | 0.817510 | 3.176124e-52 | 2.317716e-49 |
| MsG0680030599.01 | MsG0880043037.01 | 0.810914 | 9.092764e-51 | 5.551534e-48 |
| MsG0280006592.01 | MsG0880043037.01 | 0.800926 | 1.146143e-48 | 5.403391e-46 |
| MsG0280006966.01 | MsG0880043037.01 | 0.811388 | 7.178362e-51 | 4.437496e-48 |
| MsG0280007432.01 | MsG0880043037.01 | 0.864530 | 1.138225e-64 | 3.585015e-61 |
| MsG0280007575.01 | MsG0880043037.01 | 0.800602 | 1.334223e-48 | 6.238450e-46 |
| MsG0280007750.01 | MsG0880043037.01 | 0.802951 | 4.395922e-49 | 2.181633e-46 |
| MsG0280007955.01 | MsG0880043037.01 | 0.854759 | 9.936271e-62 | 2.242761e-58 |
| MsG0280008390.01 | MsG0880043037.01 | 0.816455 | 5.482011e-52 | 3.886053e-49 |
| MsG0280008391.01 | MsG0880043037.01 | 0.817404 | 3.355850e-52 | 2.441688e-49 |
| MsG0280008392.01 | MsG0880043037.01 | 0.828166 | 1.045391e-54 | 1.030917e-51 |
| MsG0280008395.01 | MsG0880043037.01 | 0.817825 | 2.697373e-52 | 1.985379e-49 |
| MsG0280008866.01 | MsG0880043037.01 | 0.822140 | 2.778048e-53 | 2.305502e-50 |
| MsG0280010349.01 | MsG0880043037.01 | 0.807715 | 4.413694e-50 | 2.476168e-47 |
| MsG0280010366.01 | MsG0880043037.01 | 0.839566 | 1.467880e-57 | 2.034946e-54 |
| MsG0280010517.01 | MsG0880043037.01 | 0.800356 | 1.497752e-48 | 6.959588e-46 |
| MsG0680035708.01 | MsG0880043037.01 | 0.802572 | 5.265507e-49 | 2.588017e-46 |
| MsG0780036517.01 | MsG0880043037.01 | 0.847156 | 1.382256e-59 | 2.434899e-56 |
| MsG0780036593.01 | MsG0880043037.01 | 0.875356 | 3.287297e-68 | 1.529958e-64 |
| MsG0780036595.01 | MsG0880043037.01 | 0.827260 | 1.725468e-54 | 1.657301e-51 |
| MsG0780036596.01 | MsG0880043037.01 | 0.863340 | 2.669629e-64 | 8.066346e-61 |
| MsG0780036602.01 | MsG0880043037.01 | 0.815721 | 7.994241e-52 | 5.554936e-49 |
| MsG0780036757.01 | MsG0880043037.01 | 0.817264 | 3.608012e-52 | 2.614959e-49 |
| MsG0780037341.01 | MsG0880043037.01 | 0.817982 | 2.486203e-52 | 1.837672e-49 |
| MsG0780037372.01 | MsG0880043037.01 | 0.819233 | 1.292951e-52 | 9.893037e-50 |
| MsG0780037395.01 | MsG0880043037.01 | 0.839643 | 1.401284e-57 | 1.947285e-54 |
| MsG0780037808.01 | MsG0880043037.01 | 0.814313 | 1.642216e-51 | 1.098222e-48 |
| MsG0780038377.01 | MsG0880043037.01 | 0.803099 | 4.097669e-49 | 2.041209e-46 |
| MsG0780038378.01 | MsG0880043037.01 | 0.837120 | 6.268405e-57 | 8.063019e-54 |
| MsG0780038744.01 | MsG0880043037.01 | 0.829822 | 4.152430e-55 | 4.298552e-52 |
| MsG0780039338.01 | MsG0880043037.01 | 0.813086 | 3.057442e-51 | 1.977518e-48 |
| MsG0780039976.01 | MsG0880043037.01 | 0.805370 | 1.379251e-49 | 7.284266e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880043037.01.T01 | MTR_8g027885 | 93.902 | 82 | 5 | 0 | 1 | 82 | 396 | 477 | 9.63e-48 | 159 |
| MsG0880043037.01.T01 | MTR_8g027870 | 93.902 | 82 | 5 | 0 | 1 | 82 | 396 | 477 | 9.63e-48 | 159 |
| MsG0880043037.01.T01 | MTR_8g008990 | 65.000 | 80 | 28 | 0 | 1 | 80 | 392 | 471 | 2.34e-31 | 115 |
| MsG0880043037.01.T01 | MTR_7g117170 | 68.831 | 77 | 24 | 0 | 1 | 77 | 399 | 475 | 1.52e-29 | 110 |
| MsG0880043037.01.T01 | MTR_8g009063 | 61.250 | 80 | 31 | 0 | 1 | 80 | 397 | 476 | 4.52e-28 | 106 |
| MsG0880043037.01.T01 | MTR_8g009055 | 61.250 | 80 | 31 | 0 | 1 | 80 | 390 | 469 | 1.85e-27 | 104 |
| MsG0880043037.01.T01 | MTR_1g019510 | 58.750 | 80 | 33 | 0 | 1 | 80 | 387 | 466 | 3.67e-27 | 103 |
| MsG0880043037.01.T01 | MTR_8g009050 | 61.250 | 80 | 31 | 0 | 1 | 80 | 390 | 469 | 5.38e-27 | 103 |
| MsG0880043037.01.T01 | MTR_6g005600 | 68.421 | 76 | 24 | 0 | 1 | 76 | 391 | 466 | 1.52e-26 | 102 |
| MsG0880043037.01.T01 | MTR_1g019520 | 57.500 | 80 | 34 | 0 | 1 | 80 | 136 | 215 | 1.62e-25 | 95.5 |
| MsG0880043037.01.T01 | MTR_8g008970 | 58.750 | 80 | 33 | 0 | 1 | 80 | 712 | 791 | 4.94e-25 | 98.2 |
| MsG0880043037.01.T01 | MTR_8g008970 | 54.878 | 82 | 37 | 0 | 2 | 83 | 389 | 470 | 2.52e-23 | 93.2 |
| MsG0880043037.01.T01 | MTR_8g009067 | 49.412 | 85 | 43 | 0 | 2 | 86 | 389 | 473 | 4.44e-23 | 92.4 |
| MsG0880043037.01.T01 | MTR_8g009067 | 49.412 | 85 | 43 | 0 | 2 | 86 | 271 | 355 | 5.01e-23 | 91.3 |
| MsG0880043037.01.T01 | MTR_8g009840 | 60.256 | 78 | 27 | 2 | 2 | 78 | 452 | 526 | 2.43e-22 | 90.5 |
| MsG0880043037.01.T01 | MTR_8g009073 | 51.899 | 79 | 38 | 0 | 2 | 80 | 389 | 467 | 3.08e-22 | 89.7 |
| MsG0880043037.01.T01 | MTR_8g009073 | 51.899 | 79 | 38 | 0 | 2 | 80 | 260 | 338 | 3.23e-22 | 89.0 |
| MsG0880043037.01.T01 | MTR_8g012635 | 51.316 | 76 | 37 | 0 | 1 | 76 | 395 | 470 | 4.81e-21 | 86.7 |
| MsG0880043037.01.T01 | MTR_0184s0040 | 53.846 | 78 | 36 | 0 | 1 | 78 | 404 | 481 | 4.86e-21 | 86.7 |
| MsG0880043037.01.T01 | MTR_0078s0190 | 53.846 | 78 | 36 | 0 | 1 | 78 | 404 | 481 | 4.86e-21 | 86.7 |
| MsG0880043037.01.T01 | MTR_7g046490 | 48.750 | 80 | 41 | 0 | 1 | 80 | 387 | 466 | 4.81e-20 | 83.6 |
| MsG0880043037.01.T01 | MTR_6g488280 | 49.367 | 79 | 39 | 1 | 1 | 78 | 387 | 465 | 7.70e-20 | 83.2 |
| MsG0880043037.01.T01 | MTR_0428s0010 | 49.367 | 79 | 39 | 1 | 1 | 78 | 387 | 465 | 7.70e-20 | 83.2 |
| MsG0880043037.01.T01 | MTR_8g012630 | 52.632 | 76 | 36 | 0 | 1 | 76 | 339 | 414 | 8.11e-20 | 82.8 |
| MsG0880043037.01.T01 | MTR_0184s0030 | 55.405 | 74 | 33 | 0 | 1 | 74 | 391 | 464 | 2.40e-19 | 81.6 |
| MsG0880043037.01.T01 | MTR_6g023665 | 47.561 | 82 | 42 | 1 | 1 | 81 | 394 | 475 | 4.73e-19 | 80.9 |
| MsG0880043037.01.T01 | MTR_8g012650 | 50.000 | 76 | 38 | 0 | 1 | 76 | 395 | 470 | 8.68e-19 | 80.1 |
| MsG0880043037.01.T01 | MTR_0184s0010 | 47.436 | 78 | 41 | 0 | 1 | 78 | 18 | 95 | 4.78e-18 | 73.2 |
| MsG0880043037.01.T01 | MTR_8g006730 | 53.247 | 77 | 35 | 1 | 1 | 76 | 389 | 465 | 9.94e-18 | 77.4 |
| MsG0880043037.01.T01 | MTR_8g006260 | 45.238 | 84 | 46 | 0 | 2 | 85 | 394 | 477 | 4.83e-17 | 75.1 |
| MsG0880043037.01.T01 | MTR_8g012730 | 47.368 | 76 | 40 | 0 | 1 | 76 | 232 | 307 | 1.63e-16 | 73.2 |
| MsG0880043037.01.T01 | MTR_8g006270 | 51.282 | 78 | 36 | 2 | 1 | 77 | 387 | 463 | 1.65e-16 | 73.9 |
| MsG0880043037.01.T01 | MTR_8g006710 | 50.667 | 75 | 36 | 1 | 1 | 74 | 388 | 462 | 2.29e-16 | 73.2 |
| MsG0880043037.01.T01 | MTR_8g012745 | 41.860 | 86 | 49 | 1 | 1 | 86 | 393 | 477 | 4.87e-16 | 72.4 |
| MsG0880043037.01.T01 | MTR_6g005640 | 71.739 | 46 | 13 | 0 | 1 | 46 | 1 | 46 | 9.31e-16 | 66.6 |
| MsG0880043037.01.T01 | MTR_0078s0060 | 48.000 | 75 | 38 | 1 | 1 | 74 | 388 | 462 | 2.01e-14 | 67.8 |
| MsG0880043037.01.T01 | MTR_8g077590 | 42.105 | 76 | 44 | 0 | 1 | 76 | 390 | 465 | 2.00e-13 | 65.1 |
| MsG0880043037.01.T01 | MTR_8g465670 | 39.759 | 83 | 45 | 2 | 1 | 78 | 389 | 471 | 8.13e-13 | 63.2 |
| MsG0880043037.01.T01 | MTR_7g047030 | 44.156 | 77 | 42 | 1 | 1 | 76 | 389 | 465 | 1.00e-12 | 63.2 |
| MsG0880043037.01.T01 | MTR_7g047270 | 44.156 | 77 | 42 | 1 | 1 | 76 | 389 | 465 | 1.00e-12 | 63.2 |
| MsG0880043037.01.T01 | MTR_5g019580 | 40.789 | 76 | 43 | 1 | 1 | 74 | 400 | 475 | 7.00e-12 | 60.5 |
| MsG0880043037.01.T01 | MTR_5g019580 | 40.789 | 76 | 43 | 1 | 1 | 74 | 424 | 499 | 7.04e-12 | 60.5 |
| MsG0880043037.01.T01 | MTR_0078s0010 | 40.741 | 81 | 47 | 1 | 1 | 80 | 389 | 469 | 1.31e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880043037.01.T01 | AT4G01070 | 52.941 | 85 | 40 | 0 | 1 | 85 | 391 | 475 | 4.15e-25 | 98.2 |
| MsG0880043037.01.T01 | AT1G01420 | 49.367 | 79 | 39 | 1 | 1 | 79 | 391 | 468 | 1.51e-18 | 79.7 |
| MsG0880043037.01.T01 | AT1G01420 | 49.367 | 79 | 39 | 1 | 1 | 79 | 394 | 471 | 1.51e-18 | 79.7 |
Find 20 sgRNAs with CRISPR-Local
Find 22 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGACCAAAAGTTGGTGAAAA+TGG | 0.199004 | 8:-18004404 | MsG0880043037.01.T01:CDS |
| AACAAAGCAAATATGTGAAT+TGG | 0.358779 | 8:-18004249 | MsG0880043037.01.T01:CDS |
| GACCAAAAGTTGGTGAAAAT+GGG | 0.373513 | 8:-18004403 | MsG0880043037.01.T01:CDS |
| AAGTGTTGTGAAGAGGTTAA+TGG | 0.406621 | 8:-18004357 | MsG0880043037.01.T01:CDS |
| AGTAATGCTCTAAAGGAAAA+CGG | 0.424259 | 8:-18004278 | MsG0880043037.01.T01:CDS |
| GTGAAAATGGGGTGGTTCAA+AGG | 0.426938 | 8:-18004391 | MsG0880043037.01.T01:CDS |
| GTAATGCTCTAAAGGAAAAC+GGG | 0.445068 | 8:-18004277 | MsG0880043037.01.T01:CDS |
| AAAATAAAGGCAAGGGTAAG+AGG | 0.455635 | 8:+18004154 | None:intergenic |
| TGCAGCTAGTAATGCTCTAA+AGG | 0.458717 | 8:-18004285 | MsG0880043037.01.T01:CDS |
| TATGTGAATTGGCTCTCAAA+TGG | 0.460975 | 8:-18004238 | MsG0880043037.01.T01:CDS |
| TGAAAATGGGGTGGTTCAAA+GGG | 0.474371 | 8:-18004390 | MsG0880043037.01.T01:CDS |
| GTTAATGGTAGGAGAAGAAG+AGG | 0.489578 | 8:-18004342 | MsG0880043037.01.T01:CDS |
| GGAAGAAATACATTGAAAGA+AGG | 0.490399 | 8:+18004175 | None:intergenic |
| AAAGATTCGTTATAGAATGA+AGG | 0.516245 | 8:-18004318 | MsG0880043037.01.T01:CDS |
| AAATTGCAAGTGTTGTGAAG+AGG | 0.574727 | 8:-18004364 | MsG0880043037.01.T01:CDS |
| GTTGTGAAGAGGTTAATGGT+AGG | 0.584786 | 8:-18004353 | MsG0880043037.01.T01:CDS |
| GTGGCTATTAGACCAAAAGT+TGG | 0.591467 | 8:-18004413 | MsG0880043037.01.T01:CDS |
| ACCAAAAGTTGGTGAAAATG+GGG | 0.645113 | 8:-18004402 | MsG0880043037.01.T01:CDS |
| AAAAGTTGGTGAAAATGGGG+TGG | 0.681286 | 8:-18004399 | MsG0880043037.01.T01:CDS |
| GAATTGGCTCTCAAATGGAA+AGG | 0.691832 | 8:-18004233 | MsG0880043037.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AAAGATTCGTTATAGAATGA+AGG | - | Chr8:18004276-18004295 | MsG0880043037.01.T01:CDS | 25.0% |
| ! | AACAAAGCAAATATGTGAAT+TGG | - | Chr8:18004345-18004364 | MsG0880043037.01.T01:CDS | 25.0% |
| ! | ATTGAGTGAAAAAGTTAAAG+TGG | - | Chr8:18004162-18004181 | MsG0880043037.01.T01:CDS | 25.0% |
| GGAAGAAATACATTGAAAGA+AGG | + | Chr8:18004422-18004441 | None:intergenic | 30.0% | |
| !! | AGTAATGCTCTAAAGGAAAA+CGG | - | Chr8:18004316-18004335 | MsG0880043037.01.T01:CDS | 30.0% |
| AAAATAAAGGCAAGGGTAAG+AGG | + | Chr8:18004443-18004462 | None:intergenic | 35.0% | |
| ! | AAATTGCAAGTGTTGTGAAG+AGG | - | Chr8:18004230-18004249 | MsG0880043037.01.T01:CDS | 35.0% |
| ! | AAGTGTTGTGAAGAGGTTAA+TGG | - | Chr8:18004237-18004256 | MsG0880043037.01.T01:CDS | 35.0% |
| ! | TATGTGAATTGGCTCTCAAA+TGG | - | Chr8:18004356-18004375 | MsG0880043037.01.T01:CDS | 35.0% |
| !! | ACCAAAAGTTGGTGAAAATG+GGG | - | Chr8:18004192-18004211 | MsG0880043037.01.T01:CDS | 35.0% |
| !! | AGACCAAAAGTTGGTGAAAA+TGG | - | Chr8:18004190-18004209 | MsG0880043037.01.T01:CDS | 35.0% |
| !! | GACCAAAAGTTGGTGAAAAT+GGG | - | Chr8:18004191-18004210 | MsG0880043037.01.T01:CDS | 35.0% |
| !! | GTAATGCTCTAAAGGAAAAC+GGG | - | Chr8:18004317-18004336 | MsG0880043037.01.T01:CDS | 35.0% |
| GTGGCTATTAGACCAAAAGT+TGG | - | Chr8:18004181-18004200 | MsG0880043037.01.T01:CDS | 40.0% | |
| GTTAATGGTAGGAGAAGAAG+AGG | - | Chr8:18004252-18004271 | MsG0880043037.01.T01:CDS | 40.0% | |
| GTTGTGAAGAGGTTAATGGT+AGG | - | Chr8:18004241-18004260 | MsG0880043037.01.T01:CDS | 40.0% | |
| TGAAAATGGGGTGGTTCAAA+GGG | - | Chr8:18004204-18004223 | MsG0880043037.01.T01:CDS | 40.0% | |
| TGCAGCTAGTAATGCTCTAA+AGG | - | Chr8:18004309-18004328 | MsG0880043037.01.T01:CDS | 40.0% | |
| ! | ACCCCATTTTCACCAACTTT+TGG | + | Chr8:18004196-18004215 | None:intergenic | 40.0% |
| ! | GAATTGGCTCTCAAATGGAA+AGG | - | Chr8:18004361-18004380 | MsG0880043037.01.T01:CDS | 40.0% |
| !! | AAAAGTTGGTGAAAATGGGG+TGG | - | Chr8:18004195-18004214 | MsG0880043037.01.T01:CDS | 40.0% |
| GTGAAAATGGGGTGGTTCAA+AGG | - | Chr8:18004203-18004222 | MsG0880043037.01.T01:CDS | 45.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr8 | gene | 18004148 | 18004468 | 18004148 | ID=MsG0880043037.01;Name=MsG0880043037.01 |
| Chr8 | mRNA | 18004148 | 18004468 | 18004148 | ID=MsG0880043037.01.T01;Parent=MsG0880043037.01;Name=MsG0880043037.01.T01;_AED=0.41;_eAED=0.41;_QI=0|-1|0|1|-1|1|1|0|106 |
| Chr8 | exon | 18004148 | 18004468 | 18004148 | ID=MsG0880043037.01.T01:exon:3558;Parent=MsG0880043037.01.T01 |
| Chr8 | CDS | 18004148 | 18004468 | 18004148 | ID=MsG0880043037.01.T01:cds;Parent=MsG0880043037.01.T01 |
| Gene Sequence |
| Protein sequence |
