Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280006323.01.T01 | XP_013462383.1 | 79.882 | 507 | 56 | 9 | 1 | 495 | 1 | 473 | 0 | 741 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280006323.01.T01 | A0A072V513 | 79.882 | 507 | 56 | 9 | 1 | 495 | 1 | 473 | 0.0 | 741 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180001186.01 | MsG0280006323.01 | 0.821834 | 3.270777e-53 | 2.690947e-50 |
| MsG0180002259.01 | MsG0280006323.01 | 0.802711 | 4.927041e-49 | 2.430428e-46 |
| MsG0180003499.01 | MsG0280006323.01 | 0.806574 | 7.700493e-50 | 4.194089e-47 |
| MsG0280006323.01 | MsG0280006783.01 | 0.811457 | 6.935484e-51 | 4.295346e-48 |
| MsG0280006323.01 | MsG0280007494.01 | 0.811835 | 5.740013e-51 | 3.590456e-48 |
| MsG0280006323.01 | MsG0280010992.01 | 0.829648 | 4.575708e-55 | 4.712199e-52 |
| MsG0280006323.01 | MsG0380015751.01 | 0.801767 | 7.710190e-49 | 3.712654e-46 |
| MsG0280006323.01 | MsG0380016920.01 | 0.800443 | 1.437948e-48 | 6.696297e-46 |
| MsG0280006323.01 | MsG0380017061.01 | 0.824924 | 6.200182e-54 | 5.569708e-51 |
| MsG0280006323.01 | MsG0480018396.01 | 0.838520 | 2.738975e-57 | 3.677707e-54 |
| MsG0280006323.01 | MsG0480018653.01 | 0.806568 | 7.724105e-50 | 4.206329e-47 |
| MsG0280006323.01 | MsG0480020402.01 | 0.816299 | 5.939341e-52 | 4.192820e-49 |
| MsG0280006323.01 | MsG0480020836.01 | 0.801472 | 8.861501e-49 | 4.235533e-46 |
| MsG0280006323.01 | MsG0480020909.01 | 0.807671 | 4.510901e-50 | 2.527688e-47 |
| MsG0280006323.01 | MsG0480023202.01 | 0.823288 | 1.501428e-53 | 1.287276e-50 |
| MsG0280006323.01 | MsG0580024038.01 | 0.809827 | 1.560867e-50 | 9.259290e-48 |
| MsG0280006323.01 | MsG0580024045.01 | 0.859714 | 3.417121e-63 | 9.110441e-60 |
| MsG0280006323.01 | MsG0580024426.01 | 0.803342 | 3.649176e-49 | 1.829206e-46 |
| MsG0280006323.01 | MsG0780040074.01 | 0.814745 | 1.317329e-51 | 8.912528e-49 |
| MsG0280006323.01 | MsG0880045773.01 | 0.804720 | 1.886561e-49 | 9.798713e-47 |
| MsG0280006323.01 | MsG0880045988.01 | 0.812005 | 5.270825e-51 | 3.312226e-48 |
| MsG0280006323.01 | MsG0880046439.01 | 0.811394 | 7.157358e-51 | 4.425281e-48 |
| MsG0280006323.01 | MsG0880046676.01 | 0.836300 | 1.014796e-56 | 1.273765e-53 |
| MsG0280006323.01 | MsG0880046903.01 | 0.815894 | 7.316909e-52 | 5.107700e-49 |
| MsG0280006323.01 | MsG0880047609.01 | 0.815966 | 7.051929e-52 | 4.932750e-49 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280006323.01.T01 | MTR_2g005950 | 79.882 | 507 | 56 | 9 | 1 | 495 | 1 | 473 | 0.0 | 741 |
| MsG0280006323.01.T01 | MTR_2g005950 | 78.865 | 511 | 62 | 9 | 1 | 499 | 1 | 477 | 0.0 | 739 |
| MsG0280006323.01.T01 | MTR_2g005950 | 79.802 | 505 | 56 | 9 | 1 | 493 | 1 | 471 | 0.0 | 737 |
| MsG0280006323.01.T01 | MTR_2g005905 | 86.099 | 223 | 30 | 1 | 242 | 464 | 175 | 396 | 3.26e-131 | 386 |
| MsG0280006323.01.T01 | MTR_3g082160 | 39.474 | 76 | 45 | 1 | 420 | 494 | 71 | 146 | 1.50e-12 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280006323.01.T01 | AT1G14770 | 41.250 | 80 | 47 | 0 | 410 | 489 | 336 | 415 | 1.66e-15 | 79.0 |
| MsG0280006323.01.T01 | AT1G14770 | 35.385 | 130 | 73 | 3 | 12 | 131 | 28 | 156 | 1.11e-12 | 70.5 |
| MsG0280006323.01.T01 | AT1G14770 | 41.250 | 80 | 47 | 0 | 410 | 489 | 336 | 415 | 1.66e-15 | 79.0 |
| MsG0280006323.01.T01 | AT1G14770 | 35.385 | 130 | 73 | 3 | 12 | 131 | 28 | 156 | 1.11e-12 | 70.5 |
| MsG0280006323.01.T01 | AT1G68030 | 37.097 | 124 | 70 | 2 | 12 | 128 | 24 | 146 | 2.64e-14 | 74.3 |
Find 93 sgRNAs with CRISPR-Local
Find 114 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTACTAGTTGCTCATTTA+TGG | 0.082595 | 2:+436479 | MsG0280006323.01.T01:CDS |
| CCAAATGTTGCATCTTTAAA+TGG | 0.184431 | 2:+436219 | MsG0280006323.01.T01:CDS |
| GAACCGGATTTGCATCTTAA+AGG | 0.221466 | 2:+435796 | MsG0280006323.01.T01:CDS |
| TTATCAAATCTAAGAACTTT+TGG | 0.225569 | 2:+435361 | MsG0280006323.01.T01:CDS |
| GCGTGAGAATATTTACAAAA+TGG | 0.241191 | 2:-436561 | None:intergenic |
| CTGAGCTCCCAGCATGCTTT+TGG | 0.248610 | 2:+436372 | MsG0280006323.01.T01:CDS |
| GAGAAATCATCGTGCGTTAA+AGG | 0.292272 | 2:-435127 | None:intergenic |
| ACACATCTGCACAAGACTTC+TGG | 0.298354 | 2:+435751 | MsG0280006323.01.T01:CDS |
| TGCATGCCAATACAACTTTC+AGG | 0.304530 | 2:-436033 | None:intergenic |
| CAATGAAGCTGGCCAATTAC+TGG | 0.316721 | 2:+436449 | MsG0280006323.01.T01:CDS |
| TTTGATTGCTTTGAAGTGTT+TGG | 0.342288 | 2:+435165 | MsG0280006323.01.T01:CDS |
| CCTCTTGATTCAGTCATTGC+CGG | 0.355543 | 2:-436405 | None:intergenic |
| CCATTTAAAGATGCAACATT+TGG | 0.365172 | 2:-436219 | None:intergenic |
| TAACAAGGGCAGTCAATTAC+TGG | 0.375342 | 2:+435978 | MsG0280006323.01.T01:CDS |
| GAAGACTTTCTTGATGAATC+AGG | 0.376060 | 2:+435706 | MsG0280006323.01.T01:CDS |
| AGAAATCATCGTGCGTTAAA+GGG | 0.376301 | 2:-435126 | None:intergenic |
| TGGGTGATTGAAGCCCTTGC+TGG | 0.376868 | 2:+435055 | MsG0280006323.01.T01:CDS |
| TTCTTCAACAACAACATTGA+AGG | 0.377958 | 2:+435207 | MsG0280006323.01.T01:CDS |
| CGTAGTGAAAAGGCGCAAAA+AGG | 0.384129 | 2:+435936 | MsG0280006323.01.T01:CDS |
| ATAGCTGAAAGAATCAATAT+TGG | 0.391071 | 2:+435546 | MsG0280006323.01.T01:intron |
| TTGGTTCCTGAAAGTTGTAT+TGG | 0.391146 | 2:+436027 | MsG0280006323.01.T01:CDS |
| TTGCATCTTAAAGGTTCAAA+TGG | 0.411084 | 2:+435805 | MsG0280006323.01.T01:CDS |
| AGCGACTAGTGTTCCACTAT+TGG | 0.413514 | 2:+436008 | MsG0280006323.01.T01:CDS |
| ATTACCATCATTTGTTGGAA+TGG | 0.414088 | 2:-436145 | None:intergenic |
| TGTGTCGAAGTGGCATTAAA+AGG | 0.418374 | 2:-435733 | None:intergenic |
| TTACCATCATTTGTTGGAAT+GGG | 0.418703 | 2:-436144 | None:intergenic |
| CGTGAGAATATTTACAAAAT+GGG | 0.418935 | 2:-436560 | None:intergenic |
| GATTGTGGTATACCGATATC+AGG | 0.419626 | 2:+435877 | MsG0280006323.01.T01:CDS |
| CAAAAGCATGCTGGGAGCTC+AGG | 0.428386 | 2:-436371 | None:intergenic |
| AGCCAAGAAAATATCTTCTT+CGG | 0.429208 | 2:+436602 | MsG0280006323.01.T01:CDS |
| ATCAATCAAAGCTTGTAAAG+TGG | 0.430997 | 2:-435098 | None:intergenic |
| TCTTAATCAAATATTGCGTC+AGG | 0.431190 | 2:+435261 | MsG0280006323.01.T01:CDS |
| ATTTATCCTCTGCATACATC+TGG | 0.440257 | 2:+436063 | MsG0280006323.01.T01:CDS |
| TCTGCATTACCATCATTTGT+TGG | 0.442391 | 2:-436150 | None:intergenic |
| CAACTTTCAGGAACCAATAG+TGG | 0.443000 | 2:-436021 | None:intergenic |
| TAACTGACATTTCACATTGT+CGG | 0.445056 | 2:-435434 | None:intergenic |
| ACATCTGTGTCACCTGATAT+CGG | 0.450178 | 2:-435889 | None:intergenic |
| TATTTGATTAAGAACGTCTT+GGG | 0.450871 | 2:-435251 | None:intergenic |
| ACCTCCGTCTGAACATGAAC+CGG | 0.460628 | 2:+435780 | MsG0280006323.01.T01:CDS |
| GTTGTTGTTGAAGAAGAAGA+AGG | 0.462113 | 2:-435199 | None:intergenic |
| GAACCTTTAAGATGCAAATC+CGG | 0.463158 | 2:-435799 | None:intergenic |
| GAGTATGAGCCGGATTTGTT+TGG | 0.464846 | 2:-435618 | None:intergenic |
| CATCATCACTTCCATGGCAT+TGG | 0.465597 | 2:+435035 | MsG0280006323.01.T01:CDS |
| ATCTTGACCAAAAGCATGCT+GGG | 0.475330 | 2:-436379 | None:intergenic |
| ATCATCACTTCCATGGCATT+GGG | 0.476433 | 2:+435036 | MsG0280006323.01.T01:CDS |
| AATCTTGACCAAAAGCATGC+TGG | 0.478241 | 2:-436380 | None:intergenic |
| TTAGCTATCTTCACTAGTAA+AGG | 0.480981 | 2:+436636 | MsG0280006323.01.T01:CDS |
| ACATCTGGAGTTGTGCTTTG+CGG | 0.481779 | 2:+436078 | MsG0280006323.01.T01:CDS |
| CAAAGCTTGTAAAGTGGGTA+AGG | 0.482479 | 2:-435092 | None:intergenic |
| AAAGTTCTTAGATTTGATAA+CGG | 0.489904 | 2:-435358 | None:intergenic |
| TTCTGCTCAGTTGGACGCAA+AGG | 0.490452 | 2:+436524 | MsG0280006323.01.T01:CDS |
| TGAATCTCAACCCAAACAAA+AGG | 0.497868 | 2:+436194 | MsG0280006323.01.T01:CDS |
| CCTGGGTGATTCTGCTCAGT+TGG | 0.498807 | 2:+436515 | MsG0280006323.01.T01:CDS |
| ATCTTAATCTCGTAGTGAAA+AGG | 0.499632 | 2:+435926 | MsG0280006323.01.T01:CDS |
| ACATCCCATTTGAAAAGCTC+CGG | 0.500366 | 2:-435385 | None:intergenic |
| TGTAGTAAGTGCAATGAAGC+TGG | 0.507212 | 2:+436438 | MsG0280006323.01.T01:CDS |
| TTAATGATCACTTAAAAGAA+AGG | 0.509885 | 2:+435584 | MsG0280006323.01.T01:CDS |
| TGGCTTATTCCAAACAAATC+CGG | 0.516709 | 2:+435609 | MsG0280006323.01.T01:CDS |
| CATCATCATCATCACTTCCA+TGG | 0.517361 | 2:+435029 | MsG0280006323.01.T01:CDS |
| ATATTTGATTAAGAACGTCT+TGG | 0.524800 | 2:-435252 | None:intergenic |
| GAGCCCATTCCAACAAATGA+TGG | 0.536861 | 2:+436141 | MsG0280006323.01.T01:CDS |
| TCAATCAAAGCTTGTAAAGT+GGG | 0.537363 | 2:-435097 | None:intergenic |
| TCTGCTCAGTTGGACGCAAA+GGG | 0.540731 | 2:+436525 | MsG0280006323.01.T01:CDS |
| CCAGCTGCTAGTGATAAAGC+TGG | 0.542825 | 2:+436252 | MsG0280006323.01.T01:CDS |
| CTTCATTGCACTTACTACAA+AGG | 0.545186 | 2:-436434 | None:intergenic |
| CCAGCTTTATCACTAGCAGC+TGG | 0.546703 | 2:-436252 | None:intergenic |
| GATAAATCTCAAGACGATGC+TGG | 0.547407 | 2:+435850 | MsG0280006323.01.T01:CDS |
| GATTGCTTTGAAGTGTTTGG+AGG | 0.558018 | 2:+435168 | MsG0280006323.01.T01:CDS |
| AGAAAATATCTTCTTCGGCA+AGG | 0.566575 | 2:+436607 | MsG0280006323.01.T01:CDS |
| TTGTTGTTGAAGAAGAAGAA+GGG | 0.568964 | 2:-435198 | None:intergenic |
| GAAATCATCGTGCGTTAAAG+GGG | 0.573184 | 2:-435125 | None:intergenic |
| GCTTCAATCACCCAATGCCA+TGG | 0.573506 | 2:-435046 | None:intergenic |
| GTTGATACTGTCAATGATTG+TGG | 0.575885 | 2:+436276 | MsG0280006323.01.T01:CDS |
| TCGCAATTGCGAGTATGAGC+CGG | 0.576741 | 2:-435628 | None:intergenic |
| GGTGACACAGATGTGTATCA+AGG | 0.592162 | 2:+435898 | MsG0280006323.01.T01:CDS |
| TCTTGATAACAAGTCTAACA+AGG | 0.597733 | 2:+435963 | MsG0280006323.01.T01:CDS |
| CATACTCGCAATTGCGACGT+GGG | 0.606758 | 2:+435634 | MsG0280006323.01.T01:CDS |
| GATTTCTTTGAAACCAGCAA+GGG | 0.608770 | 2:-435068 | None:intergenic |
| TGATTTCTTTGAAACCAGCA+AGG | 0.608996 | 2:-435069 | None:intergenic |
| TTGATTAAGAACGTCTTGGG+AGG | 0.611130 | 2:-435248 | None:intergenic |
| TCCGGTTCATGTTCAGACGG+AGG | 0.612480 | 2:-435781 | None:intergenic |
| TGATTTCTCTGAAACTACAA+AGG | 0.613163 | 2:+435141 | MsG0280006323.01.T01:CDS |
| TGTGAAATGTCAGTTAGAGA+AGG | 0.617379 | 2:+435441 | MsG0280006323.01.T01:CDS |
| CTGAAAGAATCAATATTGGA+CGG | 0.624038 | 2:+435550 | MsG0280006323.01.T01:CDS |
| GACGATGCTGGTAATGATTG+TGG | 0.625097 | 2:+435862 | MsG0280006323.01.T01:CDS |
| TCATACTCGCAATTGCGACG+TGG | 0.649029 | 2:+435633 | MsG0280006323.01.T01:CDS |
| CTTGATAACAAGTCTAACAA+GGG | 0.656375 | 2:+435964 | MsG0280006323.01.T01:CDS |
| AAATCCGGTTCATGTTCAGA+CGG | 0.657645 | 2:-435784 | None:intergenic |
| CCGGCAATGACTGAATCAAG+AGG | 0.663705 | 2:+436405 | MsG0280006323.01.T01:CDS |
| CCAACTGAGCAGAATCACCC+AGG | 0.666150 | 2:-436515 | None:intergenic |
| GATCACTTAAAAGAAAGGAG+TGG | 0.671352 | 2:+435589 | MsG0280006323.01.T01:CDS |
| ACAACTCCAGATGTATGCAG+AGG | 0.698408 | 2:-436069 | None:intergenic |
| CTTGTGCAGATGTGTCGAAG+TGG | 0.707807 | 2:-435743 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATGTTTTCAAATTTTA+GGG | + | Chr2:435307-435326 | MsG0280006323.01.T01:intron | 10.0% |
| !!! | TTTTTTTATATTTCTGAAAA+AGG | - | Chr2:435497-435516 | None:intergenic | 10.0% |
| !!! | CTTTTATGTTTTCAAATTTT+AGG | + | Chr2:435306-435325 | MsG0280006323.01.T01:intron | 15.0% |
| !! | AAAAAGAGGATATTCATAAT+AGG | + | Chr2:435659-435678 | MsG0280006323.01.T01:CDS | 20.0% |
| !! | AAAGTTCTTAGATTTGATAA+CGG | - | Chr2:435361-435380 | None:intergenic | 20.0% |
| !! | TTAATGATCACTTAAAAGAA+AGG | + | Chr2:435584-435603 | MsG0280006323.01.T01:CDS | 20.0% |
| !!! | TTATCAAATCTAAGAACTTT+TGG | + | Chr2:435361-435380 | MsG0280006323.01.T01:CDS | 20.0% |
| ! | ATAGCTGAAAGAATCAATAT+TGG | + | Chr2:435546-435565 | MsG0280006323.01.T01:intron | 25.0% |
| ! | ATATTTGATTAAGAACGTCT+TGG | - | Chr2:435255-435274 | None:intergenic | 25.0% |
| ! | CGTGAGAATATTTACAAAAT+GGG | - | Chr2:436563-436582 | None:intergenic | 25.0% |
| ! | TATTTGATTAAGAACGTCTT+GGG | - | Chr2:435254-435273 | None:intergenic | 25.0% |
| !!! | TAGTTTTACAAACCAGTAAT+TGG | - | Chr2:436464-436483 | None:intergenic | 25.0% |
| !!! | TCTTTTAAGTGATCATTAAG+TGG | - | Chr2:435583-435602 | None:intergenic | 25.0% |
| AACTACTAGTTGCTCATTTA+TGG | + | Chr2:436479-436498 | MsG0280006323.01.T01:CDS | 30.0% | |
| AGCCAAGAAAATATCTTCTT+CGG | + | Chr2:436602-436621 | MsG0280006323.01.T01:CDS | 30.0% | |
| ATCAATCAAAGCTTGTAAAG+TGG | - | Chr2:435101-435120 | None:intergenic | 30.0% | |
| ATCTTAATCTCGTAGTGAAA+AGG | + | Chr2:435926-435945 | MsG0280006323.01.T01:CDS | 30.0% | |
| CCAAATGTTGCATCTTTAAA+TGG | + | Chr2:436219-436238 | MsG0280006323.01.T01:CDS | 30.0% | |
| CCATTTAAAGATGCAACATT+TGG | - | Chr2:436222-436241 | None:intergenic | 30.0% | |
| CTGAAAGAATCAATATTGGA+CGG | + | Chr2:435550-435569 | MsG0280006323.01.T01:CDS | 30.0% | |
| GATTGATCTTACAGCAAAAA+AGG | + | Chr2:436341-436360 | MsG0280006323.01.T01:CDS | 30.0% | |
| GCGTGAGAATATTTACAAAA+TGG | - | Chr2:436564-436583 | None:intergenic | 30.0% | |
| TAACTGACATTTCACATTGT+CGG | - | Chr2:435437-435456 | None:intergenic | 30.0% | |
| TCAATCAAAGCTTGTAAAGT+GGG | - | Chr2:435100-435119 | None:intergenic | 30.0% | |
| TCTTAATCAAATATTGCGTC+AGG | + | Chr2:435261-435280 | MsG0280006323.01.T01:CDS | 30.0% | |
| TTAGCTATCTTCACTAGTAA+AGG | + | Chr2:436636-436655 | MsG0280006323.01.T01:CDS | 30.0% | |
| TTCTTCAACAACAACATTGA+AGG | + | Chr2:435207-435226 | MsG0280006323.01.T01:CDS | 30.0% | |
| TTGCATCTTAAAGGTTCAAA+TGG | + | Chr2:435805-435824 | MsG0280006323.01.T01:CDS | 30.0% | |
| ! | AAATCTAAGAACTTTTGGAC+CGG | + | Chr2:435366-435385 | MsG0280006323.01.T01:CDS | 30.0% |
| ! | ATTACCATCATTTGTTGGAA+TGG | - | Chr2:436148-436167 | None:intergenic | 30.0% |
| ! | CTTGATAACAAGTCTAACAA+GGG | + | Chr2:435964-435983 | MsG0280006323.01.T01:CDS | 30.0% |
| ! | TCTTGATAACAAGTCTAACA+AGG | + | Chr2:435963-435982 | MsG0280006323.01.T01:CDS | 30.0% |
| ! | TTACCATCATTTGTTGGAAT+GGG | - | Chr2:436147-436166 | None:intergenic | 30.0% |
| ! | TTGTTGTTGAAGAAGAAGAA+GGG | - | Chr2:435201-435220 | None:intergenic | 30.0% |
| !! | AAAGTCTTCATTTTGACAAC+TGG | - | Chr2:435695-435714 | None:intergenic | 30.0% |
| !! | AACATTTGGTTCCTTTTGTT+TGG | - | Chr2:436208-436227 | None:intergenic | 30.0% |
| !! | ACATTTGGTTCCTTTTGTTT+GGG | - | Chr2:436207-436226 | None:intergenic | 30.0% |
| !! | TGATTTCTCTGAAACTACAA+AGG | + | Chr2:435141-435160 | MsG0280006323.01.T01:CDS | 30.0% |
| !! | TTTGATTGCTTTGAAGTGTT+TGG | + | Chr2:435165-435184 | MsG0280006323.01.T01:CDS | 30.0% |
| AACAGTTGTACTCACTAACT+AGG | + | Chr2:435333-435352 | MsG0280006323.01.T01:intron | 35.0% | |
| AGAAAATATCTTCTTCGGCA+AGG | + | Chr2:436607-436626 | MsG0280006323.01.T01:CDS | 35.0% | |
| AGAAATCATCGTGCGTTAAA+GGG | - | Chr2:435129-435148 | None:intergenic | 35.0% | |
| ATTTATCCTCTGCATACATC+TGG | + | Chr2:436063-436082 | MsG0280006323.01.T01:CDS | 35.0% | |
| CTTCATTGCACTTACTACAA+AGG | - | Chr2:436437-436456 | None:intergenic | 35.0% | |
| GAAGACTTTCTTGATGAATC+AGG | + | Chr2:435706-435725 | MsG0280006323.01.T01:CDS | 35.0% | |
| GATCACTTAAAAGAAAGGAG+TGG | + | Chr2:435589-435608 | MsG0280006323.01.T01:CDS | 35.0% | |
| GTTGATACTGTCAATGATTG+TGG | + | Chr2:436276-436295 | MsG0280006323.01.T01:CDS | 35.0% | |
| TCTGCATTACCATCATTTGT+TGG | - | Chr2:436153-436172 | None:intergenic | 35.0% | |
| TGAATCTCAACCCAAACAAA+AGG | + | Chr2:436194-436213 | MsG0280006323.01.T01:CDS | 35.0% | |
| TGGCTTATTCCAAACAAATC+CGG | + | Chr2:435609-435628 | MsG0280006323.01.T01:CDS | 35.0% | |
| TGTGAAATGTCAGTTAGAGA+AGG | + | Chr2:435441-435460 | MsG0280006323.01.T01:CDS | 35.0% | |
| TTGGTTCCTGAAAGTTGTAT+TGG | + | Chr2:436027-436046 | MsG0280006323.01.T01:CDS | 35.0% | |
| ! | GTTGTTGTTGAAGAAGAAGA+AGG | - | Chr2:435202-435221 | None:intergenic | 35.0% |
| ! | TGCCGAAGAAGATATTTTCT+TGG | - | Chr2:436607-436626 | None:intergenic | 35.0% |
| !! | GAACCTTTAAGATGCAAATC+CGG | - | Chr2:435802-435821 | None:intergenic | 35.0% |
| !! | GATTTCTTTGAAACCAGCAA+GGG | - | Chr2:435071-435090 | None:intergenic | 35.0% |
| !! | TGATTTCTTTGAAACCAGCA+AGG | - | Chr2:435072-435091 | None:intergenic | 35.0% |
| AAATCCGGTTCATGTTCAGA+CGG | - | Chr2:435787-435806 | None:intergenic | 40.0% | |
| ACATCCCATTTGAAAAGCTC+CGG | - | Chr2:435388-435407 | None:intergenic | 40.0% | |
| ACATCTGTGTCACCTGATAT+CGG | - | Chr2:435892-435911 | None:intergenic | 40.0% | |
| ATCATCACTTCCATGGCATT+GGG | + | Chr2:435036-435055 | MsG0280006323.01.T01:CDS | 40.0% | |
| ATGGTGCATAAAAACTGCCT+GGG | + | Chr2:436498-436517 | MsG0280006323.01.T01:CDS | 40.0% | |
| CAAAGCTTGTAAAGTGGGTA+AGG | - | Chr2:435095-435114 | None:intergenic | 40.0% | |
| CAACTTTCAGGAACCAATAG+TGG | - | Chr2:436024-436043 | None:intergenic | 40.0% | |
| CATCATCATCATCACTTCCA+TGG | + | Chr2:435029-435048 | MsG0280006323.01.T01:CDS | 40.0% | |
| GAAATCATCGTGCGTTAAAG+GGG | - | Chr2:435128-435147 | None:intergenic | 40.0% | |
| GAACCGGATTTGCATCTTAA+AGG | + | Chr2:435796-435815 | MsG0280006323.01.T01:CDS | 40.0% | |
| GAGAAATCATCGTGCGTTAA+AGG | - | Chr2:435130-435149 | None:intergenic | 40.0% | |
| GATAAATCTCAAGACGATGC+TGG | + | Chr2:435850-435869 | MsG0280006323.01.T01:CDS | 40.0% | |
| GATTGTGGTATACCGATATC+AGG | + | Chr2:435877-435896 | MsG0280006323.01.T01:CDS | 40.0% | |
| TAACAAGGGCAGTCAATTAC+TGG | + | Chr2:435978-435997 | MsG0280006323.01.T01:CDS | 40.0% | |
| TATGGTGCATAAAAACTGCC+TGG | + | Chr2:436497-436516 | MsG0280006323.01.T01:CDS | 40.0% | |
| TGCATGCCAATACAACTTTC+AGG | - | Chr2:436036-436055 | None:intergenic | 40.0% | |
| TGTAGTAAGTGCAATGAAGC+TGG | + | Chr2:436438-436457 | MsG0280006323.01.T01:CDS | 40.0% | |
| TGTGTCGAAGTGGCATTAAA+AGG | - | Chr2:435736-435755 | None:intergenic | 40.0% | |
| TTGATTAAGAACGTCTTGGG+AGG | - | Chr2:435251-435270 | None:intergenic | 40.0% | |
| ! | AATCTTGACCAAAAGCATGC+TGG | - | Chr2:436383-436402 | None:intergenic | 40.0% |
| ! | ATCTTGACCAAAAGCATGCT+GGG | - | Chr2:436382-436401 | None:intergenic | 40.0% |
| ! | CTCTTTTGTGCGCGATAAAT+CGG | - | Chr2:435414-435433 | None:intergenic | 40.0% |
| ! | TGCTTTTGGTCAAGATTTGC+CGG | + | Chr2:436386-436405 | MsG0280006323.01.T01:CDS | 40.0% |
| !! | CTTCATTTTGACAACTGGAG+TGG | - | Chr2:435690-435709 | None:intergenic | 40.0% |
| !! | GATTGCTTTGAAGTGTTTGG+AGG | + | Chr2:435168-435187 | MsG0280006323.01.T01:CDS | 40.0% |
| ACAACTCCAGATGTATGCAG+AGG | - | Chr2:436072-436091 | None:intergenic | 45.0% | |
| ACACATCTGCACAAGACTTC+TGG | + | Chr2:435751-435770 | MsG0280006323.01.T01:CDS | 45.0% | |
| AGCGACTAGTGTTCCACTAT+TGG | + | Chr2:436008-436027 | MsG0280006323.01.T01:CDS | 45.0% | |
| CAATGAAGCTGGCCAATTAC+TGG | + | Chr2:436449-436468 | MsG0280006323.01.T01:CDS | 45.0% | |
| CATCATCACTTCCATGGCAT+TGG | + | Chr2:435035-435054 | MsG0280006323.01.T01:CDS | 45.0% | |
| CCTCTTGATTCAGTCATTGC+CGG | - | Chr2:436408-436427 | None:intergenic | 45.0% | |
| GAGCCCATTCCAACAAATGA+TGG | + | Chr2:436141-436160 | MsG0280006323.01.T01:CDS | 45.0% | |
| GGTGACACAGATGTGTATCA+AGG | + | Chr2:435898-435917 | MsG0280006323.01.T01:CDS | 45.0% | |
| ! | ACATCTGGAGTTGTGCTTTG+CGG | + | Chr2:436078-436097 | MsG0280006323.01.T01:CDS | 45.0% |
| ! | CGTAGTGAAAAGGCGCAAAA+AGG | + | Chr2:435936-435955 | MsG0280006323.01.T01:CDS | 45.0% |
| ! | GACGATGCTGGTAATGATTG+TGG | + | Chr2:435862-435881 | MsG0280006323.01.T01:CDS | 45.0% |
| ! | GAGTATGAGCCGGATTTGTT+TGG | - | Chr2:435621-435640 | None:intergenic | 45.0% |
| ! | TGGACCGGAGCTTTTCAAAT+GGG | + | Chr2:435381-435400 | MsG0280006323.01.T01:CDS | 45.0% |
| ! | TTGGACCGGAGCTTTTCAAA+TGG | + | Chr2:435380-435399 | MsG0280006323.01.T01:CDS | 45.0% |
| ACCTCCGTCTGAACATGAAC+CGG | + | Chr2:435780-435799 | MsG0280006323.01.T01:CDS | 50.0% | |
| CATACTCGCAATTGCGACGT+GGG | + | Chr2:435634-435653 | MsG0280006323.01.T01:CDS | 50.0% | |
| CCAGCTGCTAGTGATAAAGC+TGG | + | Chr2:436252-436271 | MsG0280006323.01.T01:CDS | 50.0% | |
| CCGGCAATGACTGAATCAAG+AGG | + | Chr2:436405-436424 | MsG0280006323.01.T01:CDS | 50.0% | |
| CTTGTGCAGATGTGTCGAAG+TGG | - | Chr2:435746-435765 | None:intergenic | 50.0% | |
| GCTTCAATCACCCAATGCCA+TGG | - | Chr2:435049-435068 | None:intergenic | 50.0% | |
| TCATACTCGCAATTGCGACG+TGG | + | Chr2:435633-435652 | MsG0280006323.01.T01:CDS | 50.0% | |
| TCGCAATTGCGAGTATGAGC+CGG | - | Chr2:435631-435650 | None:intergenic | 50.0% | |
| TCTGCTCAGTTGGACGCAAA+GGG | + | Chr2:436525-436544 | MsG0280006323.01.T01:CDS | 50.0% | |
| TTCTGCTCAGTTGGACGCAA+AGG | + | Chr2:436524-436543 | MsG0280006323.01.T01:CDS | 50.0% | |
| TTGCGACGTGGGAGAAAAAG+AGG | + | Chr2:435645-435664 | MsG0280006323.01.T01:CDS | 50.0% | |
| ! | CCAGCTTTATCACTAGCAGC+TGG | - | Chr2:436255-436274 | None:intergenic | 50.0% |
| CCAACTGAGCAGAATCACCC+AGG | - | Chr2:436518-436537 | None:intergenic | 55.0% | |
| CCTGGGTGATTCTGCTCAGT+TGG | + | Chr2:436515-436534 | MsG0280006323.01.T01:CDS | 55.0% | |
| TCCGGTTCATGTTCAGACGG+AGG | - | Chr2:435784-435803 | None:intergenic | 55.0% | |
| TGGGTGATTGAAGCCCTTGC+TGG | + | Chr2:435055-435074 | MsG0280006323.01.T01:CDS | 55.0% | |
| ! | CAAAAGCATGCTGGGAGCTC+AGG | - | Chr2:436374-436393 | None:intergenic | 55.0% |
| ! | CTGAGCTCCCAGCATGCTTT+TGG | + | Chr2:436372-436391 | MsG0280006323.01.T01:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr2 | gene | 435016 | 436677 | 435016 | ID=MsG0280006323.01;Name=MsG0280006323.01 |
| Chr2 | mRNA | 435016 | 436677 | 435016 | ID=MsG0280006323.01.T01;Parent=MsG0280006323.01;Name=MsG0280006323.01.T01;_AED=0.45;_eAED=0.46;_QI=0|0|0|1|1|1|3|0|500 |
| Chr2 | exon | 435016 | 435282 | 435016 | ID=MsG0280006323.01.T01:exon:634;Parent=MsG0280006323.01.T01 |
| Chr2 | exon | 435355 | 435462 | 435355 | ID=MsG0280006323.01.T01:exon:635;Parent=MsG0280006323.01.T01 |
| Chr2 | exon | 435550 | 436677 | 435550 | ID=MsG0280006323.01.T01:exon:636;Parent=MsG0280006323.01.T01 |
| Chr2 | CDS | 435016 | 435282 | 435016 | ID=MsG0280006323.01.T01:cds;Parent=MsG0280006323.01.T01 |
| Chr2 | CDS | 435355 | 435462 | 435355 | ID=MsG0280006323.01.T01:cds;Parent=MsG0280006323.01.T01 |
| Chr2 | CDS | 435550 | 436677 | 435550 | ID=MsG0280006323.01.T01:cds;Parent=MsG0280006323.01.T01 |
| Gene Sequence |
| Protein sequence |
