Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480020517.01.T01 | XP_024637633.1 | 97.059 | 170 | 5 | 0 | 1 | 170 | 1 | 170 | 1.20E-116 | 337 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480020517.01.T01 | I3SF91 | 97.059 | 170 | 5 | 0 | 1 | 170 | 1 | 170 | 5.71e-117 | 337 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080047899.01 | MsG0480020517.01 | 0.877358 | 6.697785e-69 | 3.358340e-65 |
| MsG0080048357.01 | MsG0480020517.01 | 0.805579 | 1.246927e-49 | 6.620884e-47 |
| MsG0080049040.01 | MsG0480020517.01 | 0.813698 | 2.243458e-51 | 1.475469e-48 |
| MsG0080049068.01 | MsG0480020517.01 | 0.828124 | 1.070491e-54 | 1.054361e-51 |
| MsG0180000292.01 | MsG0480020517.01 | 0.885063 | 1.122920e-71 | 7.595565e-68 |
| MsG0180000404.01 | MsG0480020517.01 | 0.825425 | 4.719632e-54 | 4.300122e-51 |
| MsG0180000670.01 | MsG0480020517.01 | 0.803863 | 2.844772e-49 | 1.445330e-46 |
| MsG0180001085.01 | MsG0480020517.01 | 0.821616 | 3.673536e-53 | 3.003402e-50 |
| MsG0180001270.01 | MsG0480020517.01 | 0.806993 | 6.279238e-50 | 3.457152e-47 |
| MsG0180002929.01 | MsG0480020517.01 | 0.858037 | 1.084105e-62 | 2.729757e-59 |
| MsG0180003741.01 | MsG0480020517.01 | 0.844946 | 5.517187e-59 | 9.050828e-56 |
| MsG0180003906.01 | MsG0480020517.01 | 0.805284 | 1.437840e-49 | 7.576618e-47 |
| MsG0180004115.01 | MsG0480020517.01 | 0.848983 | 4.328929e-60 | 8.086425e-57 |
| MsG0180004192.01 | MsG0480020517.01 | 0.803164 | 3.972632e-49 | 1.982362e-46 |
| MsG0180004541.01 | MsG0480020517.01 | 0.818438 | 1.960405e-52 | 1.467573e-49 |
| MsG0180005039.01 | MsG0480020517.01 | 0.837451 | 5.159109e-57 | 6.704306e-54 |
| MsG0180005485.01 | MsG0480020517.01 | 0.846142 | 2.615357e-59 | 4.458142e-56 |
| MsG0180005807.01 | MsG0480020517.01 | 0.806016 | 1.009159e-49 | 5.419049e-47 |
| MsG0180005964.01 | MsG0480020517.01 | 0.821362 | 4.204818e-53 | 3.413517e-50 |
| MsG0280010569.01 | MsG0480020517.01 | 0.824933 | 6.171539e-54 | 5.545186e-51 |
| MsG0280010611.01 | MsG0480020517.01 | 0.835034 | 2.122677e-56 | 2.564249e-53 |
| MsG0280011252.01 | MsG0480020517.01 | 0.807827 | 4.178172e-50 | 2.350837e-47 |
| MsG0280011454.01 | MsG0480020517.01 | 0.803298 | 3.726737e-49 | 1.865980e-46 |
| MsG0380012208.01 | MsG0480020517.01 | 0.824244 | 8.964574e-54 | 7.896300e-51 |
| MsG0380014297.01 | MsG0480020517.01 | -0.805287 | 1.436056e-49 | 7.567927e-47 |
| MsG0480018644.01 | MsG0480020517.01 | 0.821222 | 4.528283e-53 | 3.662172e-50 |
| MsG0480019221.01 | MsG0480020517.01 | 0.882329 | 1.141744e-70 | 6.926487e-67 |
| MsG0480019340.01 | MsG0480020517.01 | 0.874965 | 4.468198e-68 | 2.051243e-64 |
| MsG0480020315.01 | MsG0480020517.01 | 0.903516 | 3.201577e-79 | 4.755446e-75 |
| MsG0480020408.01 | MsG0480020517.01 | 0.803715 | 3.053711e-49 | 1.545495e-46 |
| MsG0480020517.01 | MsG0480020690.01 | 0.826944 | 2.054392e-54 | 1.954936e-51 |
| MsG0480020517.01 | MsG0480020783.01 | 0.845100 | 5.014176e-59 | 8.265840e-56 |
| MsG0480020517.01 | MsG0480020890.01 | 0.802467 | 5.532986e-49 | 2.712377e-46 |
| MsG0480020517.01 | MsG0480021060.01 | 0.852308 | 5.028661e-61 | 1.046478e-57 |
| MsG0480020517.01 | MsG0480021803.01 | 0.821868 | 3.211678e-53 | 2.644869e-50 |
| MsG0480020517.01 | MsG0480021814.01 | 0.813954 | 1.969987e-51 | 1.304606e-48 |
| MsG0480020517.01 | MsG0480021894.01 | 0.872603 | 2.801045e-67 | 1.179271e-63 |
| MsG0480020517.01 | MsG0480022149.01 | 0.825247 | 5.200725e-54 | 4.714776e-51 |
| MsG0480020517.01 | MsG0480022260.01 | 0.816221 | 6.184983e-52 | 4.356723e-49 |
| MsG0480020517.01 | MsG0480023054.01 | 0.841381 | 4.919984e-58 | 7.216564e-55 |
| MsG0480020517.01 | MsG0480023139.01 | 0.850831 | 1.316228e-60 | 2.611945e-57 |
| MsG0480020517.01 | MsG0480023314.01 | 0.836163 | 1.099017e-56 | 1.373703e-53 |
| MsG0480020517.01 | MsG0480023590.01 | 0.821242 | 4.480097e-53 | 3.624988e-50 |
| MsG0480020517.01 | MsG0480023656.01 | 0.808153 | 3.561864e-50 | 2.021459e-47 |
| MsG0480020517.01 | MsG0480023661.01 | 0.844591 | 6.875699e-59 | 1.115417e-55 |
| MsG0480020517.01 | MsG0480024022.01 | 0.803942 | 2.739283e-49 | 1.394606e-46 |
| MsG0480020517.01 | MsG0580024443.01 | 0.815929 | 7.186745e-52 | 5.021813e-49 |
| MsG0480020517.01 | MsG0580024966.01 | 0.803896 | 2.800791e-49 | 1.424207e-46 |
| MsG0480020517.01 | MsG0580025366.01 | 0.805099 | 1.572067e-49 | 8.244894e-47 |
| MsG0480020517.01 | MsG0580025411.01 | 0.816109 | 6.550962e-52 | 4.600335e-49 |
| MsG0480020517.01 | MsG0580025449.01 | 0.835390 | 1.725985e-56 | 2.107663e-53 |
| MsG0480020517.01 | MsG0580025502.01 | 0.849129 | 3.942202e-60 | 7.400336e-57 |
| MsG0480020517.01 | MsG0580025561.01 | -0.800508 | 1.394962e-48 | 6.506690e-46 |
| MsG0480020517.01 | MsG0580025607.01 | 0.914356 | 2.109337e-84 | 5.219807e-80 |
| MsG0480020517.01 | MsG0580025668.01 | 0.890774 | 7.269898e-74 | 6.201022e-70 |
| MsG0480020517.01 | MsG0580025828.01 | 0.912529 | 1.755156e-83 | 3.966107e-79 |
| MsG0480020517.01 | MsG0580025971.01 | 0.801150 | 1.031339e-48 | 4.889826e-46 |
| MsG0480020517.01 | MsG0580026179.01 | 0.867770 | 1.071491e-65 | 3.784931e-62 |
| MsG0480020517.01 | MsG0580027394.01 | 0.823733 | 1.181821e-53 | 1.026265e-50 |
| MsG0480020517.01 | MsG0580027763.01 | 0.883596 | 3.924993e-71 | 2.504781e-67 |
| MsG0480020517.01 | MsG0580028723.01 | 0.806897 | 6.582076e-50 | 3.614837e-47 |
| MsG0480020517.01 | MsG0580028912.01 | -0.804442 | 2.156437e-49 | 1.111937e-46 |
| MsG0480020517.01 | MsG0580029310.01 | 0.835358 | 1.757643e-56 | 2.144354e-53 |
| MsG0480020517.01 | MsG0580029354.01 | 0.813302 | 2.741238e-51 | 1.783530e-48 |
| MsG0480020517.01 | MsG0580029529.01 | 0.830593 | 2.691250e-55 | 2.848283e-52 |
| MsG0480020517.01 | MsG0680030627.01 | 0.811672 | 6.227286e-51 | 3.878312e-48 |
| MsG0480020517.01 | MsG0680030784.01 | 0.865655 | 5.046196e-65 | 1.654773e-61 |
| MsG0480020517.01 | MsG0680030908.01 | 0.856213 | 3.744791e-62 | 8.871229e-59 |
| MsG0480020517.01 | MsG0680031365.01 | 0.822944 | 1.806382e-53 | 1.533842e-50 |
| MsG0480020517.01 | MsG0680031959.01 | 0.818676 | 1.731218e-52 | 1.304394e-49 |
| MsG0480020517.01 | MsG0680032651.01 | 0.884933 | 1.255805e-71 | 8.449431e-68 |
| MsG0480020517.01 | MsG0680033377.01 | 0.823505 | 1.335668e-53 | 1.152275e-50 |
| MsG0480020517.01 | MsG0680034064.01 | 0.803563 | 3.284558e-49 | 1.655977e-46 |
| MsG0480020517.01 | MsG0680034750.01 | 0.854885 | 9.134854e-62 | 2.070435e-58 |
| MsG0480020517.01 | MsG0680035791.01 | 0.803238 | 3.834601e-49 | 1.917081e-46 |
| MsG0480020517.01 | MsG0780035992.01 | 0.863691 | 2.077800e-64 | 6.355402e-61 |
| MsG0480020517.01 | MsG0780036243.01 | 0.830561 | 2.739402e-55 | 2.896508e-52 |
| MsG0480020517.01 | MsG0780036307.01 | 0.813503 | 2.476244e-51 | 1.620029e-48 |
| MsG0480020517.01 | MsG0780036596.01 | 0.810814 | 9.559057e-51 | 5.820211e-48 |
| MsG0480020517.01 | MsG0780036711.01 | 0.814686 | 1.357818e-51 | 9.171855e-49 |
| MsG0480020517.01 | MsG0780036715.01 | 0.827959 | 1.172834e-54 | 1.149623e-51 |
| MsG0480020517.01 | MsG0780037341.01 | 0.845694 | 3.460657e-59 | 5.815480e-56 |
| MsG0480020517.01 | MsG0780037395.01 | 0.867069 | 1.795378e-65 | 6.186533e-62 |
| MsG0480020517.01 | MsG0780038616.01 | 0.828665 | 7.925720e-55 | 7.929704e-52 |
| MsG0480020517.01 | MsG0780038744.01 | 0.811388 | 7.178561e-51 | 4.437615e-48 |
| MsG0480020517.01 | MsG0780038784.01 | 0.847379 | 1.200471e-59 | 2.129676e-56 |
| MsG0480020517.01 | MsG0780038846.01 | 0.827683 | 1.366197e-54 | 1.328308e-51 |
| MsG0480020517.01 | MsG0780039186.01 | 0.830042 | 3.669203e-55 | 3.821690e-52 |
| MsG0480020517.01 | MsG0780039675.01 | 0.849632 | 2.855514e-60 | 5.447612e-57 |
| MsG0480020517.01 | MsG0780039746.01 | 0.803375 | 3.591977e-49 | 1.802086e-46 |
| MsG0480020517.01 | MsG0780040846.01 | 0.810309 | 1.228690e-50 | 7.381118e-48 |
| MsG0480020517.01 | MsG0780041138.01 | 0.809488 | 1.846205e-50 | 1.085370e-47 |
| MsG0480020517.01 | MsG0780041259.01 | 0.839691 | 1.362128e-57 | 1.895592e-54 |
| MsG0480020517.01 | MsG0780041694.01 | 0.831895 | 1.287643e-55 | 1.416582e-52 |
| MsG0480020517.01 | MsG0780041698.01 | 0.824286 | 8.764485e-54 | 7.728977e-51 |
| MsG0480020517.01 | MsG0880042475.01 | 0.817210 | 3.710998e-52 | 2.685725e-49 |
| MsG0480020517.01 | MsG0880042555.01 | 0.841412 | 4.827544e-58 | 7.087993e-55 |
| MsG0480020517.01 | MsG0880042890.01 | 0.827006 | 1.984871e-54 | 1.892121e-51 |
| MsG0480020517.01 | MsG0880042958.01 | 0.822654 | 2.109999e-53 | 1.777064e-50 |
| MsG0480020517.01 | MsG0880042959.01 | 0.820650 | 6.131846e-53 | 4.879988e-50 |
| MsG0480020517.01 | MsG0880043174.01 | 0.870287 | 1.635687e-66 | 6.328597e-63 |
| MsG0480020517.01 | MsG0880043814.01 | 0.827714 | 1.342965e-54 | 1.306961e-51 |
| MsG0480020517.01 | MsG0880044392.01 | 0.815247 | 1.019308e-51 | 6.990406e-49 |
| MsG0480020517.01 | MsG0880044704.01 | 0.837255 | 5.790954e-57 | 7.479088e-54 |
| MsG0480020517.01 | MsG0880045101.01 | 0.839872 | 1.221623e-57 | 1.709710e-54 |
| MsG0480020517.01 | MsG0880045158.01 | 0.817797 | 2.737221e-52 | 2.013149e-49 |
| MsG0480020517.01 | MsG0880045558.01 | 0.811699 | 6.143835e-51 | 3.829191e-48 |
| MsG0480020517.01 | MsG0880045668.01 | 0.841229 | 5.393967e-58 | 7.873370e-55 |
| MsG0480020517.01 | MsG0880046255.01 | 0.826885 | 2.122359e-54 | 2.016047e-51 |
| MsG0480020517.01 | MsG0880046382.01 | 0.807497 | 4.912021e-50 | 2.740156e-47 |
| MsG0480020517.01 | MsG0880046765.01 | 0.810735 | 9.943195e-51 | 6.041423e-48 |
| MsG0480020517.01 | MsG0880046789.01 | 0.801925 | 7.154707e-49 | 3.459158e-46 |
| MsG0480020517.01 | MsG0880047168.01 | 0.825936 | 3.571052e-54 | 3.301690e-51 |
| MsG0480020517.01 | MsG0880047422.01 | -0.806236 | 9.073709e-50 | 4.899896e-47 |
| MsG0380014926.01 | MsG0480020517.01 | 0.805577 | 1.248478e-49 | 6.628603e-47 |
| MsG0380015399.01 | MsG0480020517.01 | 0.801793 | 7.615355e-49 | 3.669556e-46 |
| MsG0380015603.01 | MsG0480020517.01 | 0.807434 | 5.064282e-50 | 2.820410e-47 |
| MsG0380015645.01 | MsG0480020517.01 | 0.807877 | 4.078184e-50 | 2.297483e-47 |
| MsG0380015693.01 | MsG0480020517.01 | 0.878386 | 2.929403e-69 | 1.526595e-65 |
| MsG0380015743.01 | MsG0480020517.01 | 0.804239 | 2.376010e-49 | 1.218783e-46 |
| MsG0380015896.01 | MsG0480020517.01 | 0.803690 | 3.090469e-49 | 1.563139e-46 |
| MsG0380016192.01 | MsG0480020517.01 | 0.886450 | 3.385304e-72 | 2.419367e-68 |
| MsG0380016425.01 | MsG0480020517.01 | -0.813690 | 2.253367e-51 | 1.481626e-48 |
| MsG0380016479.01 | MsG0480020517.01 | 0.809795 | 1.585457e-50 | 9.397772e-48 |
| MsG0380016864.01 | MsG0480020517.01 | 0.826984 | 2.009940e-54 | 1.914859e-51 |
| MsG0380017087.01 | MsG0480020517.01 | 0.829673 | 4.513484e-55 | 4.651486e-52 |
| MsG0380017088.01 | MsG0480020517.01 | 0.842036 | 3.304751e-58 | 4.947305e-55 |
| MsG0380017336.01 | MsG0480020517.01 | 0.844010 | 9.852497e-59 | 1.569511e-55 |
| MsG0380017423.01 | MsG0480020517.01 | 0.851405 | 9.065280e-61 | 1.833067e-57 |
| MsG0380017703.01 | MsG0480020517.01 | 0.819978 | 8.743797e-53 | 6.831035e-50 |
| MsG0380018069.01 | MsG0480020517.01 | 0.818634 | 1.769449e-52 | 1.331637e-49 |
| MsG0480018200.01 | MsG0480020517.01 | 0.817397 | 3.369088e-52 | 2.450822e-49 |
| MsG0280007075.01 | MsG0480020517.01 | 0.858010 | 1.104348e-62 | 2.778444e-59 |
| MsG0280007502.01 | MsG0480020517.01 | 0.818227 | 2.188139e-52 | 1.628328e-49 |
| MsG0280007750.01 | MsG0480020517.01 | 0.843441 | 1.398272e-58 | 2.188011e-55 |
| MsG0280008388.01 | MsG0480020517.01 | 0.833047 | 6.675423e-56 | 7.598883e-53 |
| MsG0280008390.01 | MsG0480020517.01 | 0.820036 | 8.479372e-53 | 6.635293e-50 |
| MsG0280008394.01 | MsG0480020517.01 | 0.834779 | 2.459830e-56 | 2.948756e-53 |
| MsG0280008397.01 | MsG0480020517.01 | 0.803763 | 2.985383e-49 | 1.512800e-46 |
| MsG0280008451.01 | MsG0480020517.01 | 0.826760 | 2.273517e-54 | 2.151725e-51 |
| MsG0280008591.01 | MsG0480020517.01 | 0.826683 | 2.371266e-54 | 2.239375e-51 |
| MsG0280010353.01 | MsG0480020517.01 | 0.818189 | 2.232108e-52 | 1.659371e-49 |
| MsG0280010503.01 | MsG0480020517.01 | 0.819263 | 1.272922e-52 | 9.747906e-50 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480020517.01.T01 | MTR_2g086680 | 68.023 | 172 | 53 | 2 | 1 | 170 | 1 | 172 | 1.02e-83 | 244 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480020517.01.T01 | AT5G22430 | 47.134 | 157 | 81 | 2 | 15 | 170 | 17 | 172 | 2.18e-45 | 147 |
| MsG0480020517.01.T01 | AT2G27385 | 45.181 | 166 | 82 | 3 | 5 | 170 | 6 | 162 | 2.78e-41 | 136 |
| MsG0480020517.01.T01 | AT2G27385 | 45.181 | 166 | 82 | 3 | 5 | 170 | 17 | 173 | 4.63e-41 | 136 |
| MsG0480020517.01.T01 | AT2G27385 | 45.181 | 166 | 82 | 3 | 5 | 170 | 17 | 173 | 4.63e-41 | 136 |
Find 30 sgRNAs with CRISPR-Local
Find 96 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGCCTTACAATTTGTGTTT+TGG | 0.164797 | 4:+42782538 | None:intergenic |
| CAAGTTTCACAAGTTATTAA+AGG | 0.220047 | 4:-42782618 | MsG0480020517.01.T01:CDS |
| TGAACACACATGATTAATTA+AGG | 0.275899 | 4:+42782411 | None:intergenic |
| ATCAGCTTGTGAAATTGTTC+AGG | 0.288968 | 4:-42783638 | MsG0480020517.01.T01:CDS |
| AACTGTTTGGCAAAACTTCT+TGG | 0.296592 | 4:-42782675 | MsG0480020517.01.T01:CDS |
| CAAAGGAAGATCAATAGTTT+TGG | 0.317110 | 4:+42782497 | None:intergenic |
| TCTTCCTTTGCCTCCAGAAT+GGG | 0.330802 | 4:-42782484 | MsG0480020517.01.T01:CDS |
| CTAGGTGCCAAACCCCATTC+TGG | 0.344968 | 4:+42782471 | None:intergenic |
| TGTAAGGCTGCAAAACCTAT+TGG | 0.353116 | 4:-42782525 | MsG0480020517.01.T01:CDS |
| CTTTAATAACTTGTGAAACT+TGG | 0.355048 | 4:+42782619 | None:intergenic |
| AATTAAGGTATTCCAATGAT+AGG | 0.380107 | 4:+42782426 | None:intergenic |
| ACACATAGCTACGATTTATC+TGG | 0.387065 | 4:-42783592 | MsG0480020517.01.T01:intron |
| TTTGCCTCCAGAATGGGGTT+TGG | 0.402516 | 4:-42782478 | MsG0480020517.01.T01:CDS |
| ATCTTCCTTTGCCTCCAGAA+TGG | 0.404991 | 4:-42782485 | MsG0480020517.01.T01:CDS |
| CTTCTGTAGTTGTCATAGCT+AGG | 0.461561 | 4:+42782751 | None:intergenic |
| TGAGGGAAGGTTAACCTTGA+AGG | 0.474424 | 4:+42782719 | None:intergenic |
| GAACAATTTCACAAGCTGAT+AGG | 0.484005 | 4:+42783641 | None:intergenic |
| TGTTTGGCAAAACTTCTTGG+TGG | 0.491974 | 4:-42782672 | MsG0480020517.01.T01:CDS |
| CTTCCTTTGCCTCCAGAATG+GGG | 0.503336 | 4:-42782483 | MsG0480020517.01.T01:CDS |
| ATTCCAATGATAGGAACAAA+AGG | 0.504181 | 4:+42782435 | None:intergenic |
| ATTAATCATGTGTGTTCAAG+TGG | 0.508053 | 4:-42782406 | MsG0480020517.01.T01:three_prime_UTR |
| AGAAGAAGATGGCTCCTTCA+AGG | 0.515472 | 4:-42782733 | MsG0480020517.01.T01:CDS |
| TCAGCTTGTGAAATTGTTCA+GGG | 0.520217 | 4:-42783637 | MsG0480020517.01.T01:CDS |
| CATGATGTCAAGAAACTAAG+AGG | 0.549180 | 4:+42782564 | None:intergenic |
| AAACCCCATTCTGGAGGCAA+AGG | 0.556721 | 4:+42782480 | None:intergenic |
| AAAGGTACATAATAGCTACT+AGG | 0.564274 | 4:+42782453 | None:intergenic |
| ATGAATCTTATATGTAGCTG+TGG | 0.599675 | 4:-42782304 | MsG0480020517.01.T01:three_prime_UTR |
| ATGACAACTACAGAAGAAGA+TGG | 0.604128 | 4:-42782744 | MsG0480020517.01.T01:CDS |
| AAGGTCACAGTGAAATGTGA+AGG | 0.615631 | 4:-42782783 | MsG0480020517.01.T01:CDS |
| GGTGCCAAACCCCATTCTGG+AGG | 0.664114 | 4:+42782474 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAATAGTTTATTTATTAATA+GGG | - | Chr4:42782529-42782548 | MsG0480020517.01.T01:CDS | 10.0% |
| !! | TCAATAGTTTATTTATTAAT+AGG | - | Chr4:42782528-42782547 | MsG0480020517.01.T01:CDS | 10.0% |
| !!! | TTTTTTTTTTTGTTTCTTTT+CGG | + | Chr4:42782890-42782909 | None:intergenic | 10.0% |
| !! | ACTTGAGTAATAAAAATTAT+AGG | - | Chr4:42783556-42783575 | MsG0480020517.01.T01:intron | 15.0% |
| !! | CTTGAGTAATAAAAATTATA+GGG | - | Chr4:42783557-42783576 | MsG0480020517.01.T01:intron | 15.0% |
| !! | AATAGTAGACATATGTATTA+TGG | - | Chr4:42782445-42782464 | MsG0480020517.01.T01:CDS | 20.0% |
| !! | ATCATGTATGTTTCTTTAAA+AGG | + | Chr4:42782650-42782669 | None:intergenic | 20.0% |
| !! | GAACATTTAATTAAACTCAA+AGG | + | Chr4:42782393-42782412 | None:intergenic | 20.0% |
| !! | TACAAGATGCATATAATATA+TGG | + | Chr4:42783089-42783108 | None:intergenic | 20.0% |
| !! | TTTGTTAAGAAATACACATT+TGG | - | Chr4:42782703-42782722 | MsG0480020517.01.T01:CDS | 20.0% |
| !!! | AATTTTTTTAGAAAGAGTGT+GGG | - | Chr4:42782944-42782963 | MsG0480020517.01.T01:intron | 20.0% |
| !!! | TAATTTTTTTAGAAAGAGTG+TGG | - | Chr4:42782943-42782962 | MsG0480020517.01.T01:intron | 20.0% |
| !!! | TCAATGATTTTCAGATATTA+AGG | - | Chr4:42783128-42783147 | MsG0480020517.01.T01:intron | 20.0% |
| !!! | TTTTTAATGTCCCTAATTAT+GGG | - | Chr4:42782614-42782633 | MsG0480020517.01.T01:CDS | 20.0% |
| !!! | TTTTTTAATGTCCCTAATTA+TGG | - | Chr4:42782613-42782632 | MsG0480020517.01.T01:CDS | 20.0% |
| ! | AAGGCCTTTACAAAAAATTA+CGG | + | Chr4:42782796-42782815 | None:intergenic | 25.0% |
| ! | CAAGTTTCACAAGTTATTAA+AGG | - | Chr4:42783312-42783331 | MsG0480020517.01.T01:intron | 25.0% |
| ! | TAAAAAAATTACATGTGTCC+CGG | + | Chr4:42782934-42782953 | None:intergenic | 25.0% |
| ! | TAAAATTGCTCCCATAATTA+GGG | + | Chr4:42782627-42782646 | None:intergenic | 25.0% |
| ! | TGAACACACATGATTAATTA+AGG | + | Chr4:42783522-42783541 | None:intergenic | 25.0% |
| !! | AATTAAGGTATTCCAATGAT+AGG | + | Chr4:42783507-42783526 | None:intergenic | 25.0% |
| !! | CTTTAATAACTTGTGAAACT+TGG | + | Chr4:42783314-42783333 | None:intergenic | 25.0% |
| !!! | AAAAATACTAGAGCTTTGTT+TGG | + | Chr4:42782598-42782617 | None:intergenic | 25.0% |
| !!! | ACAATAGTTTTTGTGTTGTT+TGG | + | Chr4:42782683-42782702 | None:intergenic | 25.0% |
| AAAAACTTCCATGAACTGTT+TGG | - | Chr4:42783242-42783261 | MsG0480020517.01.T01:intron | 30.0% | |
| AAAAGTCTCAAAGTATACTC+CGG | - | Chr4:42782912-42782931 | MsG0480020517.01.T01:intron | 30.0% | |
| AGGCCTTTACAAAAAATTAC+GGG | + | Chr4:42782795-42782814 | None:intergenic | 30.0% | |
| ATGAATCTTATATGTAGCTG+TGG | - | Chr4:42783626-42783645 | MsG0480020517.01.T01:CDS | 30.0% | |
| ATTAATCATGTGTGTTCAAG+TGG | - | Chr4:42783524-42783543 | MsG0480020517.01.T01:intron | 30.0% | |
| ATTCCAATGATAGGAACAAA+AGG | + | Chr4:42783498-42783517 | None:intergenic | 30.0% | |
| GTAAAATTGCTCCCATAATT+AGG | + | Chr4:42782628-42782647 | None:intergenic | 30.0% | |
| TTGTTTGGAGATTAAAGCTA+GGG | + | Chr4:42782583-42782602 | None:intergenic | 30.0% | |
| TTTATACCAGATGTCTCTTT+CGG | + | Chr4:42782559-42782578 | None:intergenic | 30.0% | |
| TTTGTTTGGAGATTAAAGCT+AGG | + | Chr4:42782584-42782603 | None:intergenic | 30.0% | |
| ! | AAAGGTACATAATAGCTACT+AGG | + | Chr4:42783480-42783499 | None:intergenic | 30.0% |
| ! | AGCCTTACAATTTGTGTTTT+GGG | + | Chr4:42783394-42783413 | None:intergenic | 30.0% |
| ! | CAAAGGAAGATCAATAGTTT+TGG | + | Chr4:42783436-42783455 | None:intergenic | 30.0% |
| !! | TTTTTGGCATAAAGCTGAAT+TGG | + | Chr4:42783285-42783304 | None:intergenic | 30.0% |
| !!! | ATAGTTTTGGAAGAACCAAT+AGG | + | Chr4:42783423-42783442 | None:intergenic | 30.0% |
| !!! | TGAAACTTGGTTTTGCTTTT+TGG | + | Chr4:42783301-42783320 | None:intergenic | 30.0% |
| AAAGTCTCAAAGTATACTCC+GGG | - | Chr4:42782913-42782932 | MsG0480020517.01.T01:intron | 35.0% | |
| AACTGTTTGGCAAAACTTCT+TGG | - | Chr4:42783255-42783274 | MsG0480020517.01.T01:intron | 35.0% | |
| ACACATAGCTACGATTTATC+TGG | - | Chr4:42782338-42782357 | MsG0480020517.01.T01:three_prime_UTR | 35.0% | |
| ATCAGCTTGTGAAATTGTTC+AGG | - | Chr4:42782292-42782311 | MsG0480020517.01.T01:three_prime_UTR | 35.0% | |
| ATGACAACTACAGAAGAAGA+TGG | - | Chr4:42783186-42783205 | MsG0480020517.01.T01:intron | 35.0% | |
| CATCGACCATTTGATACATA+AGG | + | Chr4:42783016-42783035 | None:intergenic | 35.0% | |
| CATGATGTCAAGAAACTAAG+AGG | + | Chr4:42783369-42783388 | None:intergenic | 35.0% | |
| CCTTTACAAAAAATTACGGG+AGG | + | Chr4:42782792-42782811 | None:intergenic | 35.0% | |
| CTTAAGGTTCCAAGAATGTT+GGG | - | Chr4:42782986-42783005 | MsG0480020517.01.T01:intron | 35.0% | |
| GAACAATTTCACAAGCTGAT+AGG | + | Chr4:42782292-42782311 | None:intergenic | 35.0% | |
| GTATACTTCTAGACACATGT+TGG | + | Chr4:42782865-42782884 | None:intergenic | 35.0% | |
| TACCTTGGAGATTTCACTTA+TGG | - | Chr4:42782824-42782843 | MsG0480020517.01.T01:intron | 35.0% | |
| TCAGCTTGTGAAATTGTTCA+GGG | - | Chr4:42782293-42782312 | MsG0480020517.01.T01:three_prime_UTR | 35.0% | |
| TTGAAGAACAATGAGAGTCA+TGG | + | Chr4:42783112-42783131 | None:intergenic | 35.0% | |
| ! | AAGTTTTGCCAAACAGTTCA+TGG | + | Chr4:42783253-42783272 | None:intergenic | 35.0% |
| ! | CAGCCTTACAATTTGTGTTT+TGG | + | Chr4:42783395-42783414 | None:intergenic | 35.0% |
| ! | GAAGTTTTTGTGTTGTCTGA+GGG | + | Chr4:42783231-42783250 | None:intergenic | 35.0% |
| ! | GCCTTACAATTTGTGTTTTG+GGG | + | Chr4:42783393-42783412 | None:intergenic | 35.0% |
| ! | GTACCTTTTGTTCCTATCAT+TGG | - | Chr4:42783492-42783511 | MsG0480020517.01.T01:intron | 35.0% |
| ! | TCTCCAAGGTATTATCAACA+AGG | + | Chr4:42782815-42782834 | None:intergenic | 35.0% |
| !! | CCTTACAATTTGTGTTTTGG+GGG | + | Chr4:42783392-42783411 | None:intergenic | 35.0% |
| !!! | AAGCTGTGTTTTTTCCCATA+TGG | - | Chr4:42782735-42782754 | MsG0480020517.01.T01:CDS | 35.0% |
| !!! | AGCTGTGTTTTTTCCCATAT+GGG | - | Chr4:42782736-42782755 | MsG0480020517.01.T01:CDS | 35.0% |
| !!! | CCTCCCGTAATTTTTTGTAA+AGG | - | Chr4:42782789-42782808 | MsG0480020517.01.T01:CDS | 35.0% |
| AAGGTCACAGTGAAATGTGA+AGG | - | Chr4:42783147-42783166 | MsG0480020517.01.T01:intron | 40.0% | |
| ACTTCTAGACACATGTTGGT+TGG | + | Chr4:42782861-42782880 | None:intergenic | 40.0% | |
| CCAACATTCTTGGAACCTTA+AGG | + | Chr4:42782988-42783007 | None:intergenic | 40.0% | |
| CCCCCAAAACACAAATTGTA+AGG | - | Chr4:42783389-42783408 | MsG0480020517.01.T01:intron | 40.0% | |
| CCTTAAGGTTCCAAGAATGT+TGG | - | Chr4:42782985-42783004 | MsG0480020517.01.T01:intron | 40.0% | |
| CTCCATAAGTGAAATCTCCA+AGG | + | Chr4:42782829-42782848 | None:intergenic | 40.0% | |
| CTTCTGTAGTTGTCATAGCT+AGG | + | Chr4:42783182-42783201 | None:intergenic | 40.0% | |
| CTTTGTCACTCAGAAGAGTT+CGG | + | Chr4:42782767-42782786 | None:intergenic | 40.0% | |
| GACCATTTGATACATAAGGC+CGG | + | Chr4:42783012-42783031 | None:intergenic | 40.0% | |
| TGTAAGGCTGCAAAACCTAT+TGG | - | Chr4:42783405-42783424 | MsG0480020517.01.T01:intron | 40.0% | |
| TGTTTGGCAAAACTTCTTGG+TGG | - | Chr4:42783258-42783277 | MsG0480020517.01.T01:intron | 40.0% | |
| ! | CTTCTAGACACATGTTGGTT+GGG | + | Chr4:42782860-42782879 | None:intergenic | 40.0% |
| ! | GGAAGTTTTTGTGTTGTCTG+AGG | + | Chr4:42783232-42783251 | None:intergenic | 40.0% |
| ! | TTTTTGTGTTGTCTGAGGGA+AGG | + | Chr4:42783227-42783246 | None:intergenic | 40.0% |
| !! | AGGCCTTGTTGATAATACCT+TGG | - | Chr4:42782809-42782828 | MsG0480020517.01.T01:intron | 40.0% |
| AAAGAAGCTCGCTTGCCTTA+AGG | - | Chr4:42782970-42782989 | MsG0480020517.01.T01:intron | 45.0% | |
| AGAAGAAGATGGCTCCTTCA+AGG | - | Chr4:42783197-42783216 | MsG0480020517.01.T01:intron | 45.0% | |
| AGAGTTCGGATGTACCCATA+TGG | + | Chr4:42782753-42782772 | None:intergenic | 45.0% | |
| ATCTTCCTTTGCCTCCAGAA+TGG | - | Chr4:42783445-42783464 | MsG0480020517.01.T01:intron | 45.0% | |
| GAGTTCGGATGTACCCATAT+GGG | + | Chr4:42782752-42782771 | None:intergenic | 45.0% | |
| TACCAGATGTCTCTTTCGGT+CGG | + | Chr4:42782555-42782574 | None:intergenic | 45.0% | |
| TCTTCCTTTGCCTCCAGAAT+GGG | - | Chr4:42783446-42783465 | MsG0480020517.01.T01:intron | 45.0% | |
| TGAGGGAAGGTTAACCTTGA+AGG | + | Chr4:42783214-42783233 | None:intergenic | 45.0% | |
| AGGTTCCAAGAATGTTGGGC+CGG | - | Chr4:42782990-42783009 | MsG0480020517.01.T01:intron | 50.0% | |
| CTTCCTTTGCCTCCAGAATG+GGG | - | Chr4:42783447-42783466 | MsG0480020517.01.T01:intron | 50.0% | |
| TTTGCCTCCAGAATGGGGTT+TGG | - | Chr4:42783452-42783471 | MsG0480020517.01.T01:intron | 50.0% | |
| ! | AAACCCCATTCTGGAGGCAA+AGG | + | Chr4:42783453-42783472 | None:intergenic | 50.0% |
| ! | GGCCGGCCTTATGTATCAAA+TGG | - | Chr4:42783007-42783026 | MsG0480020517.01.T01:intron | 50.0% |
| CTAGGTGCCAAACCCCATTC+TGG | + | Chr4:42783462-42783481 | None:intergenic | 55.0% | |
| TAAGGCCGGCCCAACATTCT+TGG | + | Chr4:42782998-42783017 | None:intergenic | 55.0% | |
| GGCCGACCGAAAGAGACATC+TGG | - | Chr4:42782550-42782569 | MsG0480020517.01.T01:CDS | 60.0% | |
| GGTGCCAAACCCCATTCTGG+AGG | + | Chr4:42783459-42783478 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr4 | gene | 42782230 | 42783722 | 42782230 | ID=MsG0480020517.01;Name=MsG0480020517.01 |
| Chr4 | mRNA | 42782230 | 42783722 | 42782230 | ID=MsG0480020517.01.T01;Parent=MsG0480020517.01;Name=MsG0480020517.01.T01;_AED=0.37;_eAED=0.37;_QI=0|1|0.5|1|1|1|2|198|170 |
| Chr4 | exon | 42782230 | 42782810 | 42782230 | ID=MsG0480020517.01.T01:exon:4622;Parent=MsG0480020517.01.T01 |
| Chr4 | exon | 42783593 | 42783722 | 42783593 | ID=MsG0480020517.01.T01:exon:4621;Parent=MsG0480020517.01.T01 |
| Chr4 | CDS | 42783593 | 42783722 | 42783593 | ID=MsG0480020517.01.T01:cds;Parent=MsG0480020517.01.T01 |
| Chr4 | CDS | 42782428 | 42782810 | 42782428 | ID=MsG0480020517.01.T01:cds;Parent=MsG0480020517.01.T01 |
| Chr4 | three_prime_UTR | 42782230 | 42782427 | 42782230 | ID=MsG0480020517.01.T01:three_prime_utr;Parent=MsG0480020517.01.T01 |
| Gene Sequence |
| Protein sequence |
