AlfalfaGEDB | MsG0480020517.01

M. sativa cultivar ZhongmuNo.1 / MsG0480020517.01

KEGG: -
GO: -
PFAM: PF01190

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480020517.01.T01	XP_024637633.1	97.059	170	5	0	1	170	1	170	1.20E-116	337

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480020517.01.T01	I3SF91	97.059	170	5	0	1	170	1	170	5.71e-117	337

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047899.01	MsG0480020517.01	0.877358	6.697785e-69	3.358340e-65
MsG0080048357.01	MsG0480020517.01	0.805579	1.246927e-49	6.620884e-47
MsG0080049040.01	MsG0480020517.01	0.813698	2.243458e-51	1.475469e-48
MsG0080049068.01	MsG0480020517.01	0.828124	1.070491e-54	1.054361e-51
MsG0180000292.01	MsG0480020517.01	0.885063	1.122920e-71	7.595565e-68
MsG0180000404.01	MsG0480020517.01	0.825425	4.719632e-54	4.300122e-51
MsG0180000670.01	MsG0480020517.01	0.803863	2.844772e-49	1.445330e-46
MsG0180001085.01	MsG0480020517.01	0.821616	3.673536e-53	3.003402e-50
MsG0180001270.01	MsG0480020517.01	0.806993	6.279238e-50	3.457152e-47
MsG0180002929.01	MsG0480020517.01	0.858037	1.084105e-62	2.729757e-59

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480020517.01.T01	MTR_2g086680	68.023	172	53	2	1	170	1	172	1.02e-83	244

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480020517.01.T01	AT5G22430	47.134	157	81	2	15	170	17	172	2.18e-45	147
MsG0480020517.01.T01	AT2G27385	45.181	166	82	3	5	170	6	162	2.78e-41	136
MsG0480020517.01.T01	AT2G27385	45.181	166	82	3	5	170	17	173	4.63e-41	136
MsG0480020517.01.T01	AT2G27385	45.181	166	82	3	5	170	17	173	4.63e-41	136

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Find 30 sgRNAs with CRISPR-Local

Find 96 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCCCATTCTGGAGGCAA+AGG	0.556721	4:+42782480	None:intergenic
AAAGGTACATAATAGCTACT+AGG	0.564274	4:+42782453	None:intergenic
AACTGTTTGGCAAAACTTCT+TGG	0.296592	4:-42782675	MsG0480020517.01.T01:CDS
AAGGTCACAGTGAAATGTGA+AGG	0.615631	4:-42782783	MsG0480020517.01.T01:CDS
AATTAAGGTATTCCAATGAT+AGG	0.380107	4:+42782426	None:intergenic
ACACATAGCTACGATTTATC+TGG	0.387065	4:-42783592	MsG0480020517.01.T01:intron
AGAAGAAGATGGCTCCTTCA+AGG	0.515472	4:-42782733	MsG0480020517.01.T01:CDS
ATCAGCTTGTGAAATTGTTC+AGG	0.288968	4:-42783638	MsG0480020517.01.T01:CDS
ATCTTCCTTTGCCTCCAGAA+TGG	0.404991	4:-42782485	MsG0480020517.01.T01:CDS
ATGAATCTTATATGTAGCTG+TGG	0.599675	4:-42782304	MsG0480020517.01.T01:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAACTTCCATGAACTGTT+TGG	-	Chr4:42783242-42783261	MsG0480020517.01.T01:intron	30.0%
AAAAGTCTCAAAGTATACTC+CGG	-	Chr4:42782912-42782931	MsG0480020517.01.T01:intron	30.0%
AGGCCTTTACAAAAAATTAC+GGG	+	Chr4:42782795-42782814	None:intergenic	30.0%
ATGAATCTTATATGTAGCTG+TGG	-	Chr4:42783626-42783645	MsG0480020517.01.T01:CDS	30.0%
ATTAATCATGTGTGTTCAAG+TGG	-	Chr4:42783524-42783543	MsG0480020517.01.T01:intron	30.0%
ATTCCAATGATAGGAACAAA+AGG	+	Chr4:42783498-42783517	None:intergenic	30.0%
GTAAAATTGCTCCCATAATT+AGG	+	Chr4:42782628-42782647	None:intergenic	30.0%
TTGTTTGGAGATTAAAGCTA+GGG	+	Chr4:42782583-42782602	None:intergenic	30.0%
TTTATACCAGATGTCTCTTT+CGG	+	Chr4:42782559-42782578	None:intergenic	30.0%
TTTGTTTGGAGATTAAAGCT+AGG	+	Chr4:42782584-42782603	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	42782230	42783722	42782230	ID=MsG0480020517.01;Name=MsG0480020517.01
Chr4	mRNA	42782230	42783722	42782230	ID=MsG0480020517.01.T01;Parent=MsG0480020517.01;Name=MsG0480020517.01.T01;_AED=0.37;_eAED=0.37;_QI=0\|1\|0.5\|1\|1\|1\|2\|198\|170
Chr4	exon	42782230	42782810	42782230	ID=MsG0480020517.01.T01:exon:4622;Parent=MsG0480020517.01.T01
Chr4	exon	42783593	42783722	42783593	ID=MsG0480020517.01.T01:exon:4621;Parent=MsG0480020517.01.T01
Chr4	CDS	42783593	42783722	42783593	ID=MsG0480020517.01.T01:cds;Parent=MsG0480020517.01.T01
Chr4	CDS	42782428	42782810	42782428	ID=MsG0480020517.01.T01:cds;Parent=MsG0480020517.01.T01
Chr4	three_prime_UTR	42782230	42782427	42782230	ID=MsG0480020517.01.T01:three_prime_utr;Parent=MsG0480020517.01.T01

Gene Sequence

>MsG0480020517.01.T01

ATGGCATATGTTCATGTTATCACAGCTCTTCTCTTTGCATTAGTTCTAGTTAGAATTGACCTATCAGCTTGTGAAATTGTTCAGGGTAAAGTCTCATGTGTTGACTGCACACATAGCTACGATTTATCTGATATTAAGGTCACAGTGAAATGTGAAGGTGTTAAAAACCTAGCTATGACAACTACAGAAGAAGATGGCTCCTTCAAGGTTAACCTTCCCTCAGACAACACAAAAACTTCCATGAACTGTTTGGCAAAACTTCTTGGTGGACCAATTCAGCTTTATGCCAAAAAGCAAAACCAAGTTTCACAAGTTATTAAAGGAAAAGAAGAAAACATCTACACAATCTCAACTCCTCTTAGTTTCTTGACATCATGCCCCCAAAACACAAATTGTAAGGCTGCAAAACCTATTGGTTCTTCCAAAACTATTGATCTTCCTTTGCCTCCAGAATGGGGTTTGGCACCTAGTAGCTATTATGTACCTTTTGTTCCTATCATTGGAATACCTTAA

Protein sequence

>MsG0480020517.01.T01

MAYVHVITALLFALVLVRIDLSACEIVQGKVSCVDCTHSYDLSDIKVTVKCEGVKNLAMTTTEEDGSFKVNLPSDNTKTSMNCLAKLLGGPIQLYAKKQNQVSQVIKGKEENIYTISTPLSFLTSCPQNTNCKAAKPIGSSKTIDLPLPPEWGLAPSSYYVPFVPIIGIP*