Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000404.01.T01 | XP_003589026.1 | 95.699 | 186 | 7 | 1 | 2 | 187 | 340 | 524 | 1.83E-124 | 371 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000404.01.T01 | P48731 | 70.186 | 161 | 41 | 3 | 2 | 161 | 292 | 446 | 4.20E-73 | 230 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000404.01.T01 | G7IB93 | 95.699 | 186 | 7 | 1 | 2 | 187 | 340 | 524 | 8.74e-125 | 371 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080047899.01 | MsG0180000404.01 | 0.897352 | 1.527811e-76 | 1.719445e-72 |
| MsG0080048152.01 | MsG0180000404.01 | 0.843999 | 9.919893e-59 | 1.579622e-55 |
| MsG0080048357.01 | MsG0180000404.01 | 0.805547 | 1.266512e-49 | 6.719122e-47 |
| MsG0180000036.01 | MsG0180000404.01 | 0.824433 | 8.093823e-54 | 7.167658e-51 |
| MsG0180000038.01 | MsG0180000404.01 | 0.870702 | 1.194875e-66 | 4.692470e-63 |
| MsG0180000289.01 | MsG0180000404.01 | 0.808756 | 2.649360e-50 | 1.527431e-47 |
| MsG0180000355.01 | MsG0180000404.01 | 0.814599 | 1.419622e-51 | 9.567061e-49 |
| MsG0180000404.01 | MsG0180000782.01 | 0.823265 | 1.520454e-53 | 1.302740e-50 |
| MsG0180000404.01 | MsG0180000835.01 | 0.803620 | 3.195821e-49 | 1.613500e-46 |
| MsG0180000404.01 | MsG0180001771.01 | 0.803216 | 3.875326e-49 | 1.936344e-46 |
| MsG0180000404.01 | MsG0180003353.01 | 0.806439 | 8.220068e-50 | 4.461784e-47 |
| MsG0180000404.01 | MsG0180003741.01 | 0.918259 | 1.943692e-86 | 5.863398e-82 |
| MsG0180000404.01 | MsG0180003885.01 | 0.803656 | 3.141747e-49 | 1.587625e-46 |
| MsG0180000404.01 | MsG0180004046.01 | 0.832383 | 9.753751e-56 | 1.088407e-52 |
| MsG0180000404.01 | MsG0180004276.01 | 0.802764 | 4.806031e-49 | 2.373943e-46 |
| MsG0180000404.01 | MsG0180004493.01 | 0.831018 | 2.117696e-55 | 2.269621e-52 |
| MsG0180000404.01 | MsG0180004605.01 | -0.826625 | 2.448198e-54 | 2.308173e-51 |
| MsG0180000404.01 | MsG0180005113.01 | 0.868199 | 7.797173e-66 | 2.796497e-62 |
| MsG0180000404.01 | MsG0180005153.01 | 0.857182 | 1.943369e-62 | 4.755266e-59 |
| MsG0180000404.01 | MsG0180005169.01 | 0.800930 | 1.143823e-48 | 5.393022e-46 |
| MsG0180000404.01 | MsG0180005524.01 | 0.810356 | 1.200556e-50 | 7.221067e-48 |
| MsG0180000404.01 | MsG0180006017.01 | 0.826239 | 3.025607e-54 | 2.821431e-51 |
| MsG0180000404.01 | MsG0180006031.01 | 0.810532 | 1.100055e-50 | 6.647344e-48 |
| MsG0180000404.01 | MsG0280006937.01 | 0.803045 | 4.203966e-49 | 2.091325e-46 |
| MsG0180000404.01 | MsG0280006993.01 | 0.807695 | 4.458971e-50 | 2.500091e-47 |
| MsG0180000404.01 | MsG0280007432.01 | 0.819092 | 1.392140e-52 | 1.061077e-49 |
| MsG0180000404.01 | MsG0280007503.01 | 0.805497 | 1.297077e-49 | 6.872565e-47 |
| MsG0180000404.01 | MsG0280007506.01 | 0.811180 | 7.966036e-51 | 4.897484e-48 |
| MsG0180000404.01 | MsG0280007527.01 | 0.800509 | 1.394252e-48 | 6.503590e-46 |
| MsG0180000404.01 | MsG0280007750.01 | 0.807094 | 5.978125e-50 | 3.300023e-47 |
| MsG0180000404.01 | MsG0280008390.01 | 0.872485 | 3.067290e-67 | 1.285932e-63 |
| MsG0180000404.01 | MsG0280008391.01 | 0.852931 | 3.337785e-61 | 7.088514e-58 |
| MsG0180000404.01 | MsG0280008392.01 | 0.858104 | 1.035989e-62 | 2.614537e-59 |
| MsG0180000404.01 | MsG0280008395.01 | 0.838054 | 3.610981e-57 | 4.780444e-54 |
| MsG0180000404.01 | MsG0280008397.01 | 0.823071 | 1.687013e-53 | 1.437691e-50 |
| MsG0180000404.01 | MsG0280008418.01 | 0.824382 | 8.321437e-54 | 7.358615e-51 |
| MsG0180000404.01 | MsG0280010503.01 | 0.816539 | 5.248666e-52 | 3.729305e-49 |
| MsG0180000404.01 | MsG0280010841.01 | 0.829936 | 3.893312e-55 | 4.043072e-52 |
| MsG0180000404.01 | MsG0380011496.01 | 0.802416 | 5.669276e-49 | 2.775649e-46 |
| MsG0180000404.01 | MsG0380013085.01 | 0.811767 | 5.937776e-51 | 3.707541e-48 |
| MsG0180000404.01 | MsG0380013299.01 | 0.814656 | 1.378526e-51 | 9.304330e-49 |
| MsG0180000404.01 | MsG0380014926.01 | 0.813964 | 1.960204e-51 | 1.298475e-48 |
| MsG0180000404.01 | MsG0380015435.01 | 0.811031 | 8.580694e-51 | 5.255038e-48 |
| MsG0180000404.01 | MsG0380016505.01 | 0.819638 | 1.045628e-52 | 8.091255e-50 |
| MsG0180000404.01 | MsG0380016671.01 | 0.820777 | 5.733857e-53 | 4.579726e-50 |
| MsG0180000404.01 | MsG0380017087.01 | 0.814101 | 1.828765e-51 | 1.215890e-48 |
| MsG0180000404.01 | MsG0380017094.01 | -0.811380 | 7.208371e-51 | 4.455079e-48 |
| MsG0180000404.01 | MsG0380017947.01 | 0.803241 | 3.829671e-49 | 1.914747e-46 |
| MsG0180000404.01 | MsG0480018200.01 | 0.835385 | 1.730920e-56 | 2.113359e-53 |
| MsG0180000404.01 | MsG0480018218.01 | 0.806997 | 6.267207e-50 | 3.450934e-47 |
| MsG0180000404.01 | MsG0480018278.01 | 0.821668 | 3.573111e-53 | 2.925769e-50 |
| MsG0180000404.01 | MsG0480018584.01 | 0.803297 | 3.728201e-49 | 1.866685e-46 |
| MsG0180000404.01 | MsG0480019221.01 | 0.807834 | 4.165760e-50 | 2.344249e-47 |
| MsG0180000404.01 | MsG0480019279.01 | 0.829723 | 4.387541e-55 | 4.528455e-52 |
| MsG0180000404.01 | MsG0480019340.01 | 0.803047 | 4.199319e-49 | 2.089145e-46 |
| MsG0180000404.01 | MsG0480020315.01 | 0.827065 | 1.921726e-54 | 1.835108e-51 |
| MsG0180000404.01 | MsG0480020517.01 | 0.825425 | 4.719632e-54 | 4.300122e-51 |
| MsG0180000404.01 | MsG0480020690.01 | 0.801745 | 7.788468e-49 | 3.748358e-46 |
| MsG0180000404.01 | MsG0480020890.01 | 0.825454 | 4.647886e-54 | 4.238109e-51 |
| MsG0180000404.01 | MsG0480021037.01 | 0.819797 | 9.615610e-53 | 7.474600e-50 |
| MsG0180000404.01 | MsG0480021195.01 | 0.811886 | 5.594188e-51 | 3.503957e-48 |
| MsG0180000404.01 | MsG0480021689.01 | 0.814532 | 1.468409e-51 | 9.878225e-49 |
| MsG0180000404.01 | MsG0480021768.01 | 0.825006 | 5.931767e-54 | 5.341022e-51 |
| MsG0180000404.01 | MsG0480021814.01 | 0.803166 | 3.969532e-49 | 1.980890e-46 |
| MsG0180000404.01 | MsG0480021815.01 | 0.801733 | 7.834924e-49 | 3.769531e-46 |
| MsG0180000404.01 | MsG0480021922.01 | 0.808910 | 2.455524e-50 | 1.421440e-47 |
| MsG0180000404.01 | MsG0480022586.01 | 0.836208 | 1.070638e-56 | 1.340200e-53 |
| MsG0180000404.01 | MsG0480022587.01 | 0.808411 | 3.138913e-50 | 1.793481e-47 |
| MsG0180000404.01 | MsG0480023221.01 | 0.827508 | 1.505424e-54 | 1.456278e-51 |
| MsG0180000404.01 | MsG0480023601.01 | 0.807598 | 4.673789e-50 | 2.613951e-47 |
| MsG0180000404.01 | MsG0480024022.01 | 0.836083 | 1.151867e-56 | 1.436255e-53 |
| MsG0180000404.01 | MsG0580024443.01 | 0.841639 | 4.207355e-58 | 6.220925e-55 |
| MsG0180000404.01 | MsG0580024619.01 | 0.802259 | 6.108459e-49 | 2.978583e-46 |
| MsG0180000404.01 | MsG0580024966.01 | 0.867589 | 1.224715e-65 | 4.299083e-62 |
| MsG0180000404.01 | MsG0580025411.01 | 0.807765 | 4.308825e-50 | 2.420402e-47 |
| MsG0180000404.01 | MsG0580025449.01 | 0.807481 | 4.950472e-50 | 2.760399e-47 |
| MsG0180000404.01 | MsG0580025466.01 | 0.858042 | 1.080337e-62 | 2.720804e-59 |
| MsG0180000404.01 | MsG0580025607.01 | 0.845174 | 4.786718e-59 | 7.909444e-56 |
| MsG0180000404.01 | MsG0580025668.01 | 0.834567 | 2.781126e-56 | 3.313459e-53 |
| MsG0180000404.01 | MsG0580025828.01 | 0.807960 | 3.914912e-50 | 2.210451e-47 |
| MsG0180000404.01 | MsG0580025971.01 | 0.804632 | 1.968033e-49 | 1.019782e-46 |
| MsG0180000404.01 | MsG0580025973.01 | 0.825354 | 4.907084e-54 | 4.461953e-51 |
| MsG0180000404.01 | MsG0580025974.01 | 0.835633 | 1.498143e-56 | 1.842617e-53 |
| MsG0180000404.01 | MsG0580026179.01 | 0.830248 | 3.268238e-55 | 3.424693e-52 |
| MsG0180000404.01 | MsG0580026485.01 | 0.800716 | 1.264725e-48 | 5.930444e-46 |
| MsG0180000404.01 | MsG0580027655.01 | 0.820973 | 5.167424e-53 | 4.150361e-50 |
| MsG0180000404.01 | MsG0580027763.01 | 0.822661 | 2.102813e-53 | 1.771284e-50 |
| MsG0180000404.01 | MsG0580027826.01 | 0.812929 | 3.310484e-51 | 2.132177e-48 |
| MsG0180000404.01 | MsG0580027925.01 | 0.837279 | 5.707195e-57 | 7.376896e-54 |
| MsG0180000404.01 | MsG0580028407.01 | 0.812142 | 4.919961e-51 | 3.103349e-48 |
| MsG0180000404.01 | MsG0580028563.01 | 0.819002 | 1.459538e-52 | 1.109796e-49 |
| MsG0180000404.01 | MsG0580028630.01 | 0.814844 | 1.252542e-51 | 8.496984e-49 |
| MsG0180000404.01 | MsG0580028960.01 | 0.816691 | 4.853336e-52 | 3.462708e-49 |
| MsG0180000404.01 | MsG0580029236.01 | 0.807836 | 4.161430e-50 | 2.341944e-47 |
| MsG0180000404.01 | MsG0580029310.01 | 0.857722 | 1.345255e-62 | 3.351993e-59 |
| MsG0180000404.01 | MsG0580029417.01 | 0.800506 | 1.396013e-48 | 6.511312e-46 |
| MsG0180000404.01 | MsG0580029418.01 | 0.806651 | 7.415985e-50 | 4.046912e-47 |
| MsG0180000404.01 | MsG0580029529.01 | 0.808397 | 3.160502e-50 | 1.805200e-47 |
| MsG0180000404.01 | MsG0580029736.01 | 0.845220 | 4.652950e-59 | 7.699918e-56 |
| MsG0180000404.01 | MsG0580030010.01 | 0.829972 | 3.816148e-55 | 3.966878e-52 |
| MsG0180000404.01 | MsG0680030328.01 | 0.820716 | 5.920835e-53 | 4.721020e-50 |
| MsG0180000404.01 | MsG0680030784.01 | 0.883803 | 3.292868e-71 | 2.118746e-67 |
| MsG0180000404.01 | MsG0680030895.01 | 0.804402 | 2.197650e-49 | 1.132028e-46 |
| MsG0180000404.01 | MsG0680030908.01 | 0.855830 | 4.849338e-62 | 1.134240e-58 |
| MsG0180000404.01 | MsG0680031263.01 | 0.803309 | 3.707231e-49 | 1.856732e-46 |
| MsG0180000404.01 | MsG0680031264.01 | 0.805354 | 1.390018e-49 | 7.338175e-47 |
| MsG0180000404.01 | MsG0680031621.01 | 0.836975 | 6.829362e-57 | 8.746857e-54 |
| MsG0180000404.01 | MsG0680031939.01 | 0.816073 | 6.673249e-52 | 4.681760e-49 |
| MsG0180000404.01 | MsG0680031959.01 | 0.869446 | 3.077721e-66 | 1.155550e-62 |
| MsG0180000404.01 | MsG0780035992.01 | 0.810433 | 1.155291e-50 | 6.962817e-48 |
| MsG0180000404.01 | MsG0780036307.01 | 0.843826 | 1.103696e-58 | 1.747991e-55 |
| MsG0180000404.01 | MsG0780036486.01 | 0.836618 | 8.422748e-57 | 1.067084e-53 |
| MsG0180000404.01 | MsG0780036659.01 | 0.813475 | 2.511764e-51 | 1.641991e-48 |
| MsG0180000404.01 | MsG0780036757.01 | 0.817483 | 3.220966e-52 | 2.348684e-49 |
| MsG0180000404.01 | MsG0780036766.01 | 0.809758 | 1.615539e-50 | 9.566650e-48 |
| MsG0180000404.01 | MsG0780036979.01 | 0.847582 | 1.055909e-59 | 1.885469e-56 |
| MsG0180000404.01 | MsG0780037093.01 | 0.847067 | 1.461616e-59 | 2.567370e-56 |
| MsG0180000404.01 | MsG0780037341.01 | 0.852949 | 3.299413e-61 | 7.012190e-58 |
| MsG0180000404.01 | MsG0780037395.01 | 0.846426 | 2.188533e-59 | 3.765701e-56 |
| MsG0180000404.01 | MsG0780038744.01 | 0.813534 | 2.438671e-51 | 1.596750e-48 |
| MsG0180000404.01 | MsG0780038784.01 | 0.804610 | 1.989055e-49 | 1.030104e-46 |
| MsG0180000404.01 | MsG0780038847.01 | 0.822425 | 2.385895e-53 | 1.996359e-50 |
| MsG0180000404.01 | MsG0780038948.01 | 0.824937 | 6.156121e-54 | 5.531983e-51 |
| MsG0180000404.01 | MsG0780039369.01 | 0.815003 | 1.154620e-51 | 7.866769e-49 |
| MsG0180000404.01 | MsG0780040286.01 | 0.819078 | 1.402546e-52 | 1.068555e-49 |
| MsG0180000404.01 | MsG0780040287.01 | 0.821798 | 3.333262e-53 | 2.739520e-50 |
| MsG0180000404.01 | MsG0780040430.01 | 0.852946 | 3.304815e-61 | 7.023036e-58 |
| MsG0180000404.01 | MsG0780040431.01 | 0.838629 | 2.566945e-57 | 3.458514e-54 |
| MsG0180000404.01 | MsG0780040846.01 | 0.841254 | 5.312612e-58 | 7.760718e-55 |
| MsG0180000404.01 | MsG0780040966.01 | 0.803305 | 3.714930e-49 | 1.860399e-46 |
| MsG0180000404.01 | MsG0780041016.01 | 0.805564 | 1.256085e-49 | 6.666698e-47 |
| MsG0180000404.01 | MsG0780041259.01 | 0.893777 | 4.582809e-75 | 4.431749e-71 |
| MsG0180000404.01 | MsG0780041391.01 | 0.813928 | 1.996538e-51 | 1.321223e-48 |
| MsG0180000404.01 | MsG0780041440.01 | 0.819310 | 1.242285e-52 | 9.524867e-50 |
| MsG0180000404.01 | MsG0780041448.01 | 0.810676 | 1.024055e-50 | 6.212293e-48 |
| MsG0180000404.01 | MsG0780041698.01 | 0.859320 | 4.487212e-63 | 1.180253e-59 |
| MsG0180000404.01 | MsG0780041699.01 | 0.811537 | 6.661246e-51 | 4.134263e-48 |
| MsG0180000404.01 | MsG0880041834.01 | 0.837394 | 5.333539e-57 | 6.918324e-54 |
| MsG0180000404.01 | MsG0880041858.01 | 0.803828 | 2.892728e-49 | 1.468356e-46 |
| MsG0180000404.01 | MsG0880042958.01 | 0.844744 | 6.255177e-59 | 1.019660e-55 |
| MsG0180000404.01 | MsG0880042959.01 | 0.832832 | 7.549159e-56 | 8.537223e-53 |
| MsG0180000404.01 | MsG0880043174.01 | 0.806258 | 8.977413e-50 | 4.850588e-47 |
| MsG0180000404.01 | MsG0880043755.01 | 0.815569 | 8.642668e-52 | 5.980298e-49 |
| MsG0180000404.01 | MsG0880044704.01 | 0.895355 | 1.037201e-75 | 1.072341e-71 |
| MsG0180000404.01 | MsG0880045495.01 | 0.808778 | 2.620807e-50 | 1.511788e-47 |
| MsG0180000404.01 | MsG0880045558.01 | 0.817857 | 2.652411e-52 | 1.953972e-49 |
| MsG0180000404.01 | MsG0880045585.01 | 0.802042 | 6.766890e-49 | 3.281478e-46 |
| MsG0180000404.01 | MsG0880047422.01 | -0.802632 | 5.115978e-49 | 2.518503e-46 |
| MsG0180000404.01 | MsG0880047442.01 | 0.805270 | 1.447244e-49 | 7.623660e-47 |
| MsG0180000404.01 | MsG0880047696.01 | 0.806505 | 7.960977e-50 | 4.328433e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000404.01.T01 | MTR_1g016490 | 95.699 | 186 | 7 | 1 | 2 | 187 | 340 | 524 | 2.22e-128 | 371 |
| MsG0180000404.01.T01 | MTR_1g023050 | 45.570 | 158 | 74 | 4 | 4 | 156 | 275 | 425 | 2.91e-34 | 127 |
| MsG0180000404.01.T01 | MTR_7g106320 | 42.938 | 177 | 75 | 7 | 1 | 156 | 256 | 427 | 1.18e-33 | 126 |
| MsG0180000404.01.T01 | MTR_3g112300 | 47.761 | 134 | 67 | 2 | 23 | 156 | 284 | 414 | 1.34e-33 | 125 |
| MsG0180000404.01.T01 | MTR_3g112300 | 43.030 | 165 | 83 | 4 | 23 | 179 | 284 | 445 | 2.44e-33 | 124 |
| MsG0180000404.01.T01 | MTR_4g051532 | 36.816 | 201 | 99 | 5 | 1 | 179 | 300 | 494 | 9.20e-33 | 123 |
| MsG0180000404.01.T01 | MTR_8g078480 | 37.912 | 182 | 102 | 5 | 2 | 173 | 482 | 662 | 4.08e-32 | 122 |
| MsG0180000404.01.T01 | MTR_5g018860 | 39.011 | 182 | 95 | 6 | 2 | 174 | 431 | 605 | 5.34e-32 | 121 |
| MsG0180000404.01.T01 | MTR_1g057790 | 40.782 | 179 | 99 | 4 | 3 | 175 | 257 | 434 | 1.24e-31 | 120 |
| MsG0180000404.01.T01 | MTR_8g098815 | 41.139 | 158 | 83 | 5 | 2 | 150 | 276 | 432 | 3.65e-30 | 116 |
| MsG0180000404.01.T01 | MTR_4g019450 | 34.826 | 201 | 97 | 7 | 1 | 178 | 261 | 450 | 7.96e-30 | 115 |
| MsG0180000404.01.T01 | MTR_3g112290 | 41.358 | 162 | 85 | 4 | 4 | 156 | 257 | 417 | 1.36e-29 | 113 |
| MsG0180000404.01.T01 | MTR_7g065050 | 35.519 | 183 | 108 | 6 | 4 | 181 | 220 | 397 | 2.00e-29 | 113 |
| MsG0180000404.01.T01 | MTR_2g095050 | 34.343 | 198 | 110 | 5 | 4 | 182 | 339 | 535 | 2.74e-28 | 110 |
| MsG0180000404.01.T01 | MTR_3g112300 | 37.415 | 147 | 77 | 4 | 1 | 135 | 250 | 393 | 9.83e-19 | 82.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000404.01.T01 | AT4G32980 | 70.186 | 161 | 41 | 3 | 2 | 161 | 292 | 446 | 4.28e-74 | 230 |
| MsG0180000404.01.T01 | AT4G32980 | 70.186 | 161 | 41 | 3 | 2 | 161 | 292 | 446 | 4.28e-74 | 230 |
| MsG0180000404.01.T01 | AT2G35940 | 45.625 | 160 | 67 | 6 | 4 | 148 | 292 | 446 | 3.06e-33 | 125 |
| MsG0180000404.01.T01 | AT2G35940 | 45.625 | 160 | 67 | 6 | 4 | 148 | 292 | 446 | 3.06e-33 | 125 |
| MsG0180000404.01.T01 | AT2G35940 | 45.625 | 160 | 67 | 6 | 4 | 148 | 292 | 446 | 3.06e-33 | 125 |
| MsG0180000404.01.T01 | AT2G27220 | 40.741 | 162 | 69 | 6 | 3 | 156 | 155 | 297 | 1.23e-32 | 121 |
| MsG0180000404.01.T01 | AT2G27220 | 40.741 | 162 | 69 | 6 | 3 | 156 | 155 | 297 | 1.23e-32 | 121 |
| MsG0180000404.01.T01 | AT2G27220 | 40.741 | 162 | 69 | 6 | 3 | 156 | 173 | 315 | 1.38e-32 | 121 |
| MsG0180000404.01.T01 | AT2G16400 | 40.000 | 180 | 98 | 5 | 4 | 175 | 195 | 372 | 8.73e-32 | 119 |
| MsG0180000404.01.T01 | AT4G34610 | 39.766 | 171 | 87 | 5 | 1 | 156 | 214 | 383 | 6.51e-31 | 117 |
| MsG0180000404.01.T01 | AT4G34610 | 39.766 | 171 | 87 | 5 | 1 | 156 | 214 | 383 | 6.51e-31 | 117 |
| MsG0180000404.01.T01 | AT4G34610 | 39.766 | 171 | 87 | 5 | 1 | 156 | 214 | 383 | 6.51e-31 | 117 |
| MsG0180000404.01.T01 | AT4G34610 | 39.766 | 171 | 87 | 5 | 1 | 156 | 214 | 383 | 6.51e-31 | 117 |
| MsG0180000404.01.T01 | AT4G36870 | 58.621 | 87 | 34 | 2 | 71 | 156 | 482 | 567 | 1.30e-29 | 114 |
| MsG0180000404.01.T01 | AT4G36870 | 58.621 | 87 | 34 | 2 | 71 | 156 | 482 | 567 | 1.30e-29 | 114 |
| MsG0180000404.01.T01 | AT2G23760 | 60.000 | 85 | 32 | 2 | 71 | 154 | 408 | 491 | 1.77e-29 | 114 |
| MsG0180000404.01.T01 | AT2G23760 | 60.000 | 85 | 32 | 2 | 71 | 154 | 408 | 491 | 1.77e-29 | 114 |
| MsG0180000404.01.T01 | AT2G23760 | 60.000 | 85 | 32 | 2 | 71 | 154 | 408 | 491 | 1.77e-29 | 114 |
| MsG0180000404.01.T01 | AT5G41410 | 42.384 | 151 | 73 | 5 | 21 | 159 | 315 | 463 | 2.09e-29 | 114 |
| MsG0180000404.01.T01 | AT1G19700 | 41.718 | 163 | 84 | 5 | 4 | 156 | 259 | 420 | 2.61e-29 | 113 |
| MsG0180000404.01.T01 | AT1G19700 | 41.718 | 163 | 84 | 5 | 4 | 156 | 259 | 420 | 2.61e-29 | 113 |
| MsG0180000404.01.T01 | AT1G19700 | 41.718 | 163 | 84 | 5 | 4 | 156 | 259 | 420 | 2.61e-29 | 113 |
| MsG0180000404.01.T01 | AT1G19700 | 41.718 | 163 | 84 | 5 | 4 | 156 | 259 | 420 | 2.61e-29 | 113 |
| MsG0180000404.01.T01 | AT1G19700 | 41.718 | 163 | 84 | 5 | 4 | 156 | 259 | 420 | 2.61e-29 | 113 |
| MsG0180000404.01.T01 | AT2G27990 | 39.869 | 153 | 87 | 4 | 4 | 155 | 344 | 492 | 4.87e-29 | 112 |
| MsG0180000404.01.T01 | AT1G75410 | 41.875 | 160 | 85 | 5 | 4 | 156 | 257 | 415 | 2.18e-28 | 110 |
| MsG0180000404.01.T01 | AT1G75410 | 41.875 | 160 | 85 | 5 | 4 | 156 | 257 | 415 | 2.18e-28 | 110 |
| MsG0180000404.01.T01 | AT1G75430 | 37.725 | 167 | 88 | 4 | 3 | 156 | 108 | 271 | 2.59e-28 | 107 |
| MsG0180000404.01.T01 | AT5G02030 | 59.420 | 69 | 27 | 1 | 86 | 154 | 348 | 415 | 1.75e-24 | 100 |
| MsG0180000404.01.T01 | AT2G23760 | 39.706 | 136 | 30 | 3 | 71 | 154 | 408 | 543 | 4.23e-23 | 96.3 |
| MsG0180000404.01.T01 | AT4G36870 | 51.515 | 66 | 30 | 2 | 71 | 135 | 482 | 546 | 8.50e-15 | 72.0 |
| MsG0180000404.01.T01 | AT4G36870 | 50.000 | 64 | 30 | 2 | 71 | 133 | 482 | 544 | 1.17e-13 | 68.9 |
| MsG0180000404.01.T01 | AT1G75410 | 34.783 | 138 | 82 | 5 | 4 | 134 | 257 | 393 | 6.35e-13 | 66.6 |
Find 35 sgRNAs with CRISPR-Local
Find 73 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTTTCTGGCAAGCCCCTT+TGG | 0.227378 | 1:+5566872 | None:intergenic |
| TCTTTCTGGCAAGCCCCTTT+GGG | 0.243439 | 1:+5566873 | None:intergenic |
| AAATGCTTCTCTGCATCTTT+AGG | 0.274049 | 1:+5566569 | None:intergenic |
| AACGGTTTCTCGACTATATA+AGG | 0.297571 | 1:-5567052 | MsG0180000404.01.T01:CDS |
| CTGTTTCCGTTCTACGTGAT+TGG | 0.305984 | 1:-5566849 | MsG0180000404.01.T01:CDS |
| GGTTTATAAATGCGCGTGTT+CGG | 0.404462 | 1:-5566183 | MsG0180000404.01.T01:CDS |
| AGAACGGAAACAGATCTTTC+TGG | 0.415143 | 1:+5566859 | None:intergenic |
| TAAATGCGCGTGTTCGGCTA+TGG | 0.423300 | 1:-5566177 | MsG0180000404.01.T01:CDS |
| TTCATTCATTCAAAAGCAAT+GGG | 0.425095 | 1:-5566935 | MsG0180000404.01.T01:CDS |
| GCATACATTTCCTCAATCAA+TGG | 0.431572 | 1:+5566151 | None:intergenic |
| AAATGTTTAATATGAATTGA+AGG | 0.435021 | 1:-5566048 | None:intergenic |
| TAGCAAACATATTCTTTCCA+TGG | 0.443732 | 1:-5567013 | MsG0180000404.01.T01:CDS |
| GGGCTCTTCAACAGTTGAAA+AGG | 0.453231 | 1:-5566915 | MsG0180000404.01.T01:CDS |
| TGCACACTTTGCTGTCAAAA+CGG | 0.454758 | 1:-5567070 | MsG0180000404.01.T01:CDS |
| TGAAAAGGAAAGATCAGTTA+TGG | 0.458634 | 1:-5566900 | MsG0180000404.01.T01:CDS |
| CTTCATTCATTCAAAAGCAA+TGG | 0.463764 | 1:-5566936 | MsG0180000404.01.T01:CDS |
| GCAAAGTGTGCATGTATTTG+TGG | 0.466187 | 1:+5567081 | None:intergenic |
| TTCATGGTCAGAAGAGGATA+AGG | 0.491594 | 1:-5566974 | MsG0180000404.01.T01:CDS |
| AGCAAACATATTCTTTCCAT+GGG | 0.494717 | 1:-5567012 | MsG0180000404.01.T01:CDS |
| ACTGTTAAAATTTGATCCCA+TGG | 0.497477 | 1:+5566996 | None:intergenic |
| ATGAGAGCAGTGAAAGAAGC+AGG | 0.499804 | 1:-5566087 | MsG0180000404.01.T01:CDS |
| TGGTTGTGTAGGTATCAAAC+TGG | 0.504145 | 1:-5566204 | MsG0180000404.01.T01:intron |
| AAGTGGGTTGACTAGAAGTC+AGG | 0.504398 | 1:-5566534 | MsG0180000404.01.T01:intron |
| AGAAAAGCTTGTCGAAATGA+AGG | 0.508701 | 1:-5566115 | MsG0180000404.01.T01:CDS |
| ATCAGTTATGGAGGCCCCAA+AGG | 0.509828 | 1:-5566888 | MsG0180000404.01.T01:CDS |
| CTTTCTGGCAAGCCCCTTTG+GGG | 0.514861 | 1:+5566874 | None:intergenic |
| TCAGTTATGGAGGCCCCAAA+GGG | 0.515348 | 1:-5566887 | MsG0180000404.01.T01:CDS |
| GCTATGGAAACCATTGATTG+AGG | 0.555071 | 1:-5566161 | MsG0180000404.01.T01:CDS |
| TAACAGTTCATGGTCAGAAG+AGG | 0.576067 | 1:-5566980 | MsG0180000404.01.T01:CDS |
| GAACATCCAATCACGTAGAA+CGG | 0.600137 | 1:+5566843 | None:intergenic |
| TAGATAATACTTACGGATGG+AGG | 0.617974 | 1:+5566813 | None:intergenic |
| TATATAAGGACTTGAGAGAG+AGG | 0.620065 | 1:-5567038 | MsG0180000404.01.T01:CDS |
| TTATAGATAATACTTACGGA+TGG | 0.646426 | 1:+5566810 | None:intergenic |
| AAAGGAAAGATCAGTTATGG+AGG | 0.667219 | 1:-5566897 | MsG0180000404.01.T01:CDS |
| CAGTTATGGAGGCCCCAAAG+GGG | 0.731077 | 1:-5566886 | MsG0180000404.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAACCAAAGTTTAATATAA+AGG | - | Chr1:5566410-5566429 | MsG0180000404.01.T01:intron | 15.0% |
| !!! | TGATCTTTTATTATAGATAA+AGG | + | Chr1:5566552-5566571 | None:intergenic | 15.0% |
| !!! | TTTAATAACTTTTACGATAA+GGG | + | Chr1:5566925-5566944 | None:intergenic | 15.0% |
| !! | AATAATCTTGGTCATTAATT+TGG | + | Chr1:5566811-5566830 | None:intergenic | 20.0% |
| !! | AGTGATTAGAGTTATATTTA+TGG | - | Chr1:5566961-5566980 | MsG0180000404.01.T01:CDS | 20.0% |
| !! | ATTAGAGTTATATTTATGGT+TGG | - | Chr1:5566965-5566984 | MsG0180000404.01.T01:CDS | 20.0% |
| !! | ATTTACTTGCAATAAAAAGT+GGG | - | Chr1:5566639-5566658 | MsG0180000404.01.T01:intron | 20.0% |
| !! | TCGATTATAGATAATACTTA+CGG | + | Chr1:5566386-5566405 | None:intergenic | 20.0% |
| !! | TTTCAACTGATAAATAATCT+TGG | + | Chr1:5566823-5566842 | None:intergenic | 20.0% |
| !!! | GTTTAATAACTTTTACGATA+AGG | + | Chr1:5566926-5566945 | None:intergenic | 20.0% |
| !!! | TTAAAACTGATTTTGGTATT+TGG | - | Chr1:5566767-5566786 | MsG0180000404.01.T01:intron | 20.0% |
| ! | ATTTATCAGTTGAAAACATG+TGG | - | Chr1:5566828-5566847 | MsG0180000404.01.T01:CDS | 25.0% |
| ! | CATTTACTTGCAATAAAAAG+TGG | - | Chr1:5566638-5566657 | MsG0180000404.01.T01:intron | 25.0% |
| ! | GAGACCTTTATATTAAACTT+TGG | + | Chr1:5566417-5566436 | None:intergenic | 25.0% |
| ! | TTATAGATAATACTTACGGA+TGG | + | Chr1:5566382-5566401 | None:intergenic | 25.0% |
| ! | TTCATTCATTCAAAAGCAAT+GGG | - | Chr1:5566254-5566273 | MsG0180000404.01.T01:intron | 25.0% |
| !!! | GATCAAATTTTAACAGTTCA+TGG | - | Chr1:5566199-5566218 | MsG0180000404.01.T01:intron | 25.0% |
| !!! | GTCACATACATATTTTGATT+TGG | - | Chr1:5566687-5566706 | MsG0180000404.01.T01:intron | 25.0% |
| ACTGTTAAAATTTGATCCCA+TGG | + | Chr1:5566196-5566215 | None:intergenic | 30.0% | |
| AGCAAACATATTCTTTCCAT+GGG | - | Chr1:5566177-5566196 | MsG0180000404.01.T01:CDS | 30.0% | |
| CAAGGATTAAGTAATGTCTA+CGG | + | Chr1:5566864-5566883 | None:intergenic | 30.0% | |
| CTTCATTCATTCAAAAGCAA+TGG | - | Chr1:5566253-5566272 | MsG0180000404.01.T01:intron | 30.0% | |
| GATAAAAAACCTTGATACTG+TGG | + | Chr1:5566454-5566473 | None:intergenic | 30.0% | |
| TAGCAAACATATTCTTTCCA+TGG | - | Chr1:5566176-5566195 | MsG0180000404.01.T01:CDS | 30.0% | |
| TGAAAAGGAAAGATCAGTTA+TGG | - | Chr1:5566289-5566308 | MsG0180000404.01.T01:intron | 30.0% | |
| ! | ATATTTATGGTTGGTTGTGT+AGG | - | Chr1:5566974-5566993 | MsG0180000404.01.T01:CDS | 30.0% |
| ! | CCTGACTATTAATTTGGAAT+CGG | + | Chr1:5566737-5566756 | None:intergenic | 30.0% |
| ! | GATAAGGGCTACATTTTTAA+TGG | + | Chr1:5566910-5566929 | None:intergenic | 30.0% |
| AAAGGAAAGATCAGTTATGG+AGG | - | Chr1:5566292-5566311 | MsG0180000404.01.T01:intron | 35.0% | |
| AAATGCTTCTCTGCATCTTT+AGG | + | Chr1:5566623-5566642 | None:intergenic | 35.0% | |
| AACGGTTTCTCGACTATATA+AGG | - | Chr1:5566137-5566156 | MsG0180000404.01.T01:CDS | 35.0% | |
| ACAATGATGTGATGCATTTC+AGG | - | Chr1:5566594-5566613 | MsG0180000404.01.T01:intron | 35.0% | |
| AGAAAAGCTTGTCGAAATGA+AGG | - | Chr1:5567074-5567093 | MsG0180000404.01.T01:CDS | 35.0% | |
| AGATCATTGATGAATGCATG+TGG | - | Chr1:5566566-5566585 | MsG0180000404.01.T01:CDS | 35.0% | |
| ATTAATAGTCAGGTCAGGAT+CGG | - | Chr1:5566744-5566763 | MsG0180000404.01.T01:intron | 35.0% | |
| CCGATTCCAAATTAATAGTC+AGG | - | Chr1:5566734-5566753 | MsG0180000404.01.T01:intron | 35.0% | |
| GCATACATTTCCTCAATCAA+TGG | + | Chr1:5567041-5567060 | None:intergenic | 35.0% | |
| TAGATAATACTTACGGATGG+AGG | + | Chr1:5566379-5566398 | None:intergenic | 35.0% | |
| TATATAAGGACTTGAGAGAG+AGG | - | Chr1:5566151-5566170 | MsG0180000404.01.T01:CDS | 35.0% | |
| TCCAAATTAATAGTCAGGTC+AGG | - | Chr1:5566739-5566758 | MsG0180000404.01.T01:intron | 35.0% | |
| TCCTGACCTGACTATTAATT+TGG | + | Chr1:5566743-5566762 | None:intergenic | 35.0% | |
| TTAAGTAATGTCTACGGATC+CGG | + | Chr1:5566858-5566877 | None:intergenic | 35.0% | |
| ! | GGTCATTAATTTGGATCGAA+TGG | + | Chr1:5566802-5566821 | None:intergenic | 35.0% |
| ! | GTTGAAAACATGTGGTTTTC+CGG | - | Chr1:5566836-5566855 | MsG0180000404.01.T01:CDS | 35.0% |
| !! | GGATCGGTTAAAACTGATTT+TGG | - | Chr1:5566760-5566779 | MsG0180000404.01.T01:intron | 35.0% |
| !!! | AGGTTTTTTATCCCCAATTC+CGG | - | Chr1:5566462-5566481 | MsG0180000404.01.T01:intron | 35.0% |
| !!! | TAATCCTTGCTTGTTTTGAG+AGG | - | Chr1:5566875-5566894 | MsG0180000404.01.T01:CDS | 35.0% |
| AGAACGGAAACAGATCTTTC+TGG | + | Chr1:5566333-5566352 | None:intergenic | 40.0% | |
| AGTTCCTCTCAAAACAAGCA+AGG | + | Chr1:5566882-5566901 | None:intergenic | 40.0% | |
| GAACATCCAATCACGTAGAA+CGG | + | Chr1:5566349-5566368 | None:intergenic | 40.0% | |
| GCAAAGTGTGCATGTATTTG+TGG | + | Chr1:5566111-5566130 | None:intergenic | 40.0% | |
| GGTTTATAAATGCGCGTGTT+CGG | - | Chr1:5567006-5567025 | MsG0180000404.01.T01:CDS | 40.0% | |
| TAACAGTTCATGGTCAGAAG+AGG | - | Chr1:5566209-5566228 | MsG0180000404.01.T01:intron | 40.0% | |
| TGGTTGTGTAGGTATCAAAC+TGG | - | Chr1:5566985-5567004 | MsG0180000404.01.T01:CDS | 40.0% | |
| TTCATGGTCAGAAGAGGATA+AGG | - | Chr1:5566215-5566234 | MsG0180000404.01.T01:intron | 40.0% | |
| ! | GCTATGGAAACCATTGATTG+AGG | - | Chr1:5567028-5567047 | MsG0180000404.01.T01:CDS | 40.0% |
| ! | TGCACACTTTGCTGTCAAAA+CGG | - | Chr1:5566119-5566138 | MsG0180000404.01.T01:CDS | 40.0% |
| ATGAGAGCAGTGAAAGAAGC+AGG | - | Chr1:5567102-5567121 | MsG0180000404.01.T01:CDS | 45.0% | |
| CTGTTTCCGTTCTACGTGAT+TGG | - | Chr1:5566340-5566359 | MsG0180000404.01.T01:intron | 45.0% | |
| GGGCTCTTCAACAGTTGAAA+AGG | - | Chr1:5566274-5566293 | MsG0180000404.01.T01:intron | 45.0% | |
| !! | AAGTGGGTTGACTAGAAGTC+AGG | - | Chr1:5566655-5566674 | MsG0180000404.01.T01:intron | 45.0% |
| ATCAGTTATGGAGGCCCCAA+AGG | - | Chr1:5566301-5566320 | MsG0180000404.01.T01:intron | 50.0% | |
| CGATTGCAGCCACAGTATCA+AGG | - | Chr1:5566442-5566461 | MsG0180000404.01.T01:intron | 50.0% | |
| TAAATGCGCGTGTTCGGCTA+TGG | - | Chr1:5567012-5567031 | MsG0180000404.01.T01:CDS | 50.0% | |
| TCAGTTATGGAGGCCCCAAA+GGG | - | Chr1:5566302-5566321 | MsG0180000404.01.T01:intron | 50.0% | |
| ! | ATCTTTCTGGCAAGCCCCTT+TGG | + | Chr1:5566320-5566339 | None:intergenic | 50.0% |
| ! | TCTTTCTGGCAAGCCCCTTT+GGG | + | Chr1:5566319-5566338 | None:intergenic | 50.0% |
| AGCTGATGCAGCCGGAATTG+GGG | + | Chr1:5566476-5566495 | None:intergenic | 55.0% | |
| CAGCTGATGCAGCCGGAATT+GGG | + | Chr1:5566477-5566496 | None:intergenic | 55.0% | |
| CAGTTATGGAGGCCCCAAAG+GGG | - | Chr1:5566303-5566322 | MsG0180000404.01.T01:intron | 55.0% | |
| CGAAATGCAGCTGATGCAGC+CGG | + | Chr1:5566484-5566503 | None:intergenic | 55.0% | |
| ! | CTTTCTGGCAAGCCCCTTTG+GGG | + | Chr1:5566318-5566337 | None:intergenic | 55.0% |
| GCAGCTGATGCAGCCGGAAT+TGG | + | Chr1:5566478-5566497 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 5566051 | 5567160 | 5566051 | ID=MsG0180000404.01;Name=MsG0180000404.01 |
| Chr1 | mRNA | 5566051 | 5567160 | 5566051 | ID=MsG0180000404.01.T01;Parent=MsG0180000404.01;Name=MsG0180000404.01.T01;_AED=0.39;_eAED=0.41;_QI=0|0|0|1|1|1|3|0|187 |
| Chr1 | exon | 5566823 | 5567160 | 5566823 | ID=MsG0180000404.01.T01:exon:2699;Parent=MsG0180000404.01.T01 |
| Chr1 | exon | 5566535 | 5566595 | 5566535 | ID=MsG0180000404.01.T01:exon:2700;Parent=MsG0180000404.01.T01 |
| Chr1 | exon | 5566051 | 5566215 | 5566051 | ID=MsG0180000404.01.T01:exon:2701;Parent=MsG0180000404.01.T01 |
| Chr1 | CDS | 5566823 | 5567160 | 5566823 | ID=MsG0180000404.01.T01:cds;Parent=MsG0180000404.01.T01 |
| Chr1 | CDS | 5566535 | 5566595 | 5566535 | ID=MsG0180000404.01.T01:cds;Parent=MsG0180000404.01.T01 |
| Chr1 | CDS | 5566051 | 5566215 | 5566051 | ID=MsG0180000404.01.T01:cds;Parent=MsG0180000404.01.T01 |
| Gene Sequence |
| Protein sequence |
