Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048210.01.T01 | XP_039685750.1 | 89.709 | 447 | 18 | 1 | 29 | 447 | 253 | 699 | 0 | 820 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048210.01.T01 | F4HXL0 | 61.276 | 439 | 129 | 7 | 41 | 447 | 284 | 713 | 3.18E-175 | 510 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048210.01.T01 | A0A396JY70 | 89.709 | 447 | 18 | 1 | 29 | 447 | 253 | 699 | 0.0 | 820 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048177.01 | MsG0080048210.01 | 0.817607 | 3.020706e-52 | 2.210039e-49 |
| MsG0080048178.01 | MsG0080048210.01 | 0.848455 | 6.061816e-60 | 1.113128e-56 |
| MsG0080048205.01 | MsG0080048210.01 | 0.804044 | 2.609163e-49 | 1.331771e-46 |
| MsG0080048210.01 | MsG0180000197.01 | 0.810119 | 1.350541e-50 | 8.073196e-48 |
| MsG0080048210.01 | MsG0180000555.01 | 0.815714 | 8.024610e-52 | 5.574841e-49 |
| MsG0080048210.01 | MsG0180000585.01 | 0.804363 | 2.238805e-49 | 1.152132e-46 |
| MsG0080048210.01 | MsG0180000797.01 | 0.801225 | 9.954234e-49 | 4.728363e-46 |
| MsG0080048210.01 | MsG0180000821.01 | 0.823228 | 1.551053e-53 | 1.327562e-50 |
| MsG0080048210.01 | MsG0180000855.01 | 0.801931 | 7.132500e-49 | 3.448983e-46 |
| MsG0080048210.01 | MsG0180001312.01 | 0.825403 | 4.777179e-54 | 4.350017e-51 |
| MsG0080048210.01 | MsG0180001904.01 | 0.823217 | 1.559931e-53 | 1.334760e-50 |
| MsG0080048210.01 | MsG0180001922.01 | 0.834264 | 3.314816e-56 | 3.913398e-53 |
| MsG0080048210.01 | MsG0180002952.01 | 0.806280 | 8.882021e-50 | 4.801527e-47 |
| MsG0080048210.01 | MsG0180003190.01 | 0.808239 | 3.415632e-50 | 1.942830e-47 |
| MsG0080048210.01 | MsG0180004598.01 | 0.803615 | 3.203438e-49 | 1.617149e-46 |
| MsG0080048210.01 | MsG0180004986.01 | 0.807919 | 3.994304e-50 | 2.252765e-47 |
| MsG0080048210.01 | MsG0180005125.01 | 0.804790 | 1.824019e-49 | 9.490923e-47 |
| MsG0080048210.01 | MsG0180005160.01 | 0.809510 | 1.825986e-50 | 1.074133e-47 |
| MsG0080048210.01 | MsG0180005354.01 | 0.803685 | 3.098036e-49 | 1.566734e-46 |
| MsG0080048210.01 | MsG0180005743.01 | 0.830686 | 2.553727e-55 | 2.710296e-52 |
| MsG0080048210.01 | MsG0180005813.01 | 0.833369 | 5.549205e-56 | 6.377609e-53 |
| MsG0080048210.01 | MsG0180006016.01 | 0.804119 | 2.516772e-49 | 1.287093e-46 |
| MsG0080048210.01 | MsG0180006050.01 | 0.806769 | 7.004292e-50 | 3.834029e-47 |
| MsG0080048210.01 | MsG0280006462.01 | 0.812402 | 4.316403e-51 | 2.741985e-48 |
| MsG0080048210.01 | MsG0280006583.01 | 0.806729 | 7.139337e-50 | 3.904052e-47 |
| MsG0080048210.01 | MsG0280006728.01 | 0.805867 | 1.084950e-49 | 5.803771e-47 |
| MsG0080048210.01 | MsG0280006935.01 | 0.844806 | 6.017188e-59 | 9.828331e-56 |
| MsG0080048210.01 | MsG0280007048.01 | 0.809671 | 1.686537e-50 | 9.963996e-48 |
| MsG0080048210.01 | MsG0280007117.01 | 0.806052 | 9.917303e-50 | 5.330236e-47 |
| MsG0080048210.01 | MsG0280007120.01 | 0.802863 | 4.583634e-49 | 2.269778e-46 |
| MsG0080048210.01 | MsG0280007481.01 | 0.811067 | 8.427906e-51 | 5.166130e-48 |
| MsG0080048210.01 | MsG0280007549.01 | 0.833445 | 5.312842e-56 | 6.119886e-53 |
| MsG0080048210.01 | MsG0280007585.01 | 0.820836 | 5.556490e-53 | 4.445623e-50 |
| MsG0080048210.01 | MsG0280008039.01 | 0.821818 | 3.298612e-53 | 2.712642e-50 |
| MsG0080048210.01 | MsG0280008073.01 | 0.810733 | 9.955034e-51 | 6.048287e-48 |
| MsG0080048210.01 | MsG0280008295.01 | 0.827836 | 1.255402e-54 | 1.226023e-51 |
| MsG0080048210.01 | MsG0280008363.01 | 0.803227 | 3.854995e-49 | 1.926704e-46 |
| MsG0080048210.01 | MsG0280008907.01 | 0.805830 | 1.104758e-49 | 5.903900e-47 |
| MsG0080048210.01 | MsG0280010614.01 | 0.814873 | 1.234118e-51 | 8.378130e-49 |
| MsG0080048210.01 | MsG0280010648.01 | 0.815215 | 1.036470e-51 | 7.101712e-49 |
| MsG0080048210.01 | MsG0280010784.01 | 0.815404 | 9.405187e-52 | 6.478442e-49 |
| MsG0080048210.01 | MsG0280010901.01 | 0.806882 | 6.629288e-50 | 3.639448e-47 |
| MsG0080048210.01 | MsG0280011105.01 | 0.817630 | 2.985262e-52 | 2.185442e-49 |
| MsG0080048210.01 | MsG0280011131.01 | 0.804026 | 2.632409e-49 | 1.343007e-46 |
| MsG0080048210.01 | MsG0280011235.01 | 0.808287 | 3.335729e-50 | 1.899804e-47 |
| MsG0080048210.01 | MsG0280011334.01 | 0.806035 | 1.000287e-49 | 5.373809e-47 |
| MsG0080048210.01 | MsG0280011410.01 | 0.819229 | 1.295706e-52 | 9.912903e-50 |
| MsG0080048210.01 | MsG0380011754.01 | 0.818805 | 1.618374e-52 | 1.223686e-49 |
| MsG0080048210.01 | MsG0380012020.01 | 0.814946 | 1.189259e-51 | 8.089585e-49 |
| MsG0080048210.01 | MsG0380012458.01 | 0.810851 | 9.385728e-51 | 5.720501e-48 |
| MsG0080048210.01 | MsG0380014365.01 | 0.803842 | 2.874351e-49 | 1.459549e-46 |
| MsG0080048210.01 | MsG0380014913.01 | 0.838554 | 2.684357e-57 | 3.608097e-54 |
| MsG0080048210.01 | MsG0380015607.01 | 0.810717 | 1.003497e-50 | 6.094311e-48 |
| MsG0080048210.01 | MsG0380015878.01 | 0.817561 | 3.093679e-52 | 2.260567e-49 |
| MsG0080048210.01 | MsG0380015931.01 | 0.813199 | 2.888605e-51 | 1.874053e-48 |
| MsG0080048210.01 | MsG0380015986.01 | 0.836108 | 1.135062e-56 | 1.416338e-53 |
| MsG0080048210.01 | MsG0380016581.01 | 0.811696 | 6.152526e-51 | 3.834291e-48 |
| MsG0080048210.01 | MsG0380016624.01 | 0.825636 | 4.207474e-54 | 3.856809e-51 |
| MsG0080048210.01 | MsG0380017158.01 | 0.809130 | 2.203192e-50 | 1.283010e-47 |
| MsG0080048210.01 | MsG0380017210.01 | 0.801004 | 1.104925e-48 | 5.219637e-46 |
| MsG0080048210.01 | MsG0380017285.01 | 0.810372 | 1.190988e-50 | 7.166495e-48 |
| MsG0080048210.01 | MsG0480018321.01 | 0.813448 | 2.547280e-51 | 1.664003e-48 |
| MsG0080048210.01 | MsG0480018460.01 | 0.808782 | 2.615690e-50 | 1.509009e-47 |
| MsG0080048210.01 | MsG0480019289.01 | 0.816295 | 5.953439e-52 | 4.202279e-49 |
| MsG0080048210.01 | MsG0480019434.01 | 0.802042 | 6.769118e-49 | 3.282498e-46 |
| MsG0080048210.01 | MsG0480020242.01 | 0.808071 | 3.707630e-50 | 2.099516e-47 |
| MsG0080048210.01 | MsG0480020445.01 | 0.808722 | 2.692954e-50 | 1.551138e-47 |
| MsG0080048210.01 | MsG0480021021.01 | 0.815996 | 6.942531e-52 | 4.860303e-49 |
| MsG0080048210.01 | MsG0480021240.01 | 0.824648 | 7.201628e-54 | 6.418407e-51 |
| MsG0080048210.01 | MsG0480021695.01 | 0.825303 | 5.045228e-54 | 4.581059e-51 |
| MsG0080048210.01 | MsG0480021900.01 | 0.817603 | 3.026363e-52 | 2.213913e-49 |
| MsG0080048210.01 | MsG0480022451.01 | 0.822210 | 2.675311e-53 | 2.224721e-50 |
| MsG0080048210.01 | MsG0480022597.01 | 0.808517 | 2.978466e-50 | 1.706574e-47 |
| MsG0080048210.01 | MsG0480022598.01 | 0.807887 | 4.058914e-50 | 2.287229e-47 |
| MsG0080048210.01 | MsG0480022752.01 | 0.819599 | 1.067213e-52 | 8.249388e-50 |
| MsG0080048210.01 | MsG0480023224.01 | 0.833433 | 5.348243e-56 | 6.158275e-53 |
| MsG0080048210.01 | MsG0480023245.01 | 0.809336 | 1.990032e-50 | 1.165254e-47 |
| MsG0080048210.01 | MsG0480023517.01 | 0.806537 | 7.838860e-50 | 4.265527e-47 |
| MsG0080048210.01 | MsG0480024014.01 | 0.825436 | 4.692614e-54 | 4.276732e-51 |
| MsG0080048210.01 | MsG0580024205.01 | 0.839039 | 2.011011e-57 | 2.743267e-54 |
| MsG0080048210.01 | MsG0580024682.01 | 0.816873 | 4.418032e-52 | 3.168216e-49 |
| MsG0080048210.01 | MsG0580024733.01 | 0.801528 | 8.627899e-49 | 4.129773e-46 |
| MsG0080048210.01 | MsG0580024826.01 | 0.821093 | 4.848970e-53 | 3.907461e-50 |
| MsG0080048210.01 | MsG0580024960.01 | 0.807416 | 5.109983e-50 | 2.844562e-47 |
| MsG0080048210.01 | MsG0580025009.01 | 0.831696 | 1.441687e-55 | 1.576642e-52 |
| MsG0080048210.01 | MsG0580025278.01 | 0.804868 | 1.756473e-49 | 9.158467e-47 |
| MsG0080048210.01 | MsG0580025328.01 | 0.812452 | 4.210744e-51 | 2.678422e-48 |
| MsG0080048210.01 | MsG0580025453.01 | 0.816623 | 5.025829e-52 | 3.579309e-49 |
| MsG0080048210.01 | MsG0580025546.01 | 0.801627 | 8.236839e-49 | 3.952216e-46 |
| MsG0080048210.01 | MsG0580025769.01 | 0.810602 | 1.062598e-50 | 6.433183e-48 |
| MsG0080048210.01 | MsG0580025907.01 | 0.810572 | 1.078357e-50 | 6.523290e-48 |
| MsG0080048210.01 | MsG0580025989.01 | 0.808077 | 3.696653e-50 | 2.093670e-47 |
| MsG0080048210.01 | MsG0580026011.01 | 0.811930 | 5.471718e-51 | 3.431294e-48 |
| MsG0080048210.01 | MsG0580026068.01 | 0.823465 | 1.365109e-53 | 1.176266e-50 |
| MsG0080048210.01 | MsG0580026596.01 | 0.806037 | 9.991657e-50 | 5.368077e-47 |
| MsG0080048210.01 | MsG0580027129.01 | 0.808571 | 2.901460e-50 | 1.664721e-47 |
| MsG0080048210.01 | MsG0580027228.01 | 0.838679 | 2.492406e-57 | 3.362992e-54 |
| MsG0080048210.01 | MsG0580028526.01 | 0.813476 | 2.511091e-51 | 1.641590e-48 |
| MsG0080048210.01 | MsG0580028980.01 | 0.819671 | 1.027347e-52 | 7.957372e-50 |
| MsG0080048210.01 | MsG0580029629.01 | 0.809736 | 1.632712e-50 | 9.662749e-48 |
| MsG0080048210.01 | MsG0580029658.01 | 0.813981 | 1.943272e-51 | 1.287811e-48 |
| MsG0080048210.01 | MsG0680030684.01 | 0.816971 | 4.200548e-52 | 3.020366e-49 |
| MsG0080048210.01 | MsG0680030685.01 | 0.802797 | 4.730154e-49 | 2.338457e-46 |
| MsG0080048210.01 | MsG0680030841.01 | 0.801750 | 7.771422e-49 | 3.740568e-46 |
| MsG0080048210.01 | MsG0680031538.01 | 0.805063 | 1.599400e-49 | 8.380639e-47 |
| MsG0080048210.01 | MsG0680035656.01 | 0.809070 | 2.269155e-50 | 1.319258e-47 |
| MsG0080048210.01 | MsG0680035844.01 | 0.800904 | 1.157918e-48 | 5.456009e-46 |
| MsG0080048210.01 | MsG0780035958.01 | 0.841235 | 5.372584e-58 | 7.843607e-55 |
| MsG0080048210.01 | MsG0780036630.01 | 0.816549 | 5.222922e-52 | 3.711969e-49 |
| MsG0080048210.01 | MsG0780036633.01 | 0.805115 | 1.560121e-49 | 8.185599e-47 |
| MsG0080048210.01 | MsG0780037975.01 | 0.816146 | 6.428156e-52 | 4.518684e-49 |
| MsG0080048210.01 | MsG0780038117.01 | 0.806275 | 8.901843e-50 | 4.811864e-47 |
| MsG0080048210.01 | MsG0780038231.01 | 0.802344 | 5.866826e-49 | 2.867057e-46 |
| MsG0080048210.01 | MsG0780038323.01 | 0.803784 | 2.955439e-49 | 1.498444e-46 |
| MsG0080048210.01 | MsG0780038836.01 | 0.803417 | 3.521022e-49 | 1.768454e-46 |
| MsG0080048210.01 | MsG0780039405.01 | 0.803939 | 2.743454e-49 | 1.396626e-46 |
| MsG0080048210.01 | MsG0780039896.01 | 0.810272 | 1.251785e-50 | 7.512568e-48 |
| MsG0080048210.01 | MsG0780040516.01 | 0.828775 | 7.451445e-55 | 7.478931e-52 |
| MsG0080048210.01 | MsG0780040679.01 | 0.845175 | 4.782849e-59 | 7.903434e-56 |
| MsG0080048210.01 | MsG0780040742.01 | 0.811909 | 5.530208e-51 | 3.466038e-48 |
| MsG0080048210.01 | MsG0780040758.01 | 0.813969 | 1.955353e-51 | 1.295438e-48 |
| MsG0080048210.01 | MsG0780041370.01 | 0.816795 | 4.600610e-52 | 3.291814e-49 |
| MsG0080048210.01 | MsG0780041376.01 | 0.806597 | 7.612729e-50 | 4.148768e-47 |
| MsG0080048210.01 | MsG0780041485.01 | 0.809959 | 1.462004e-50 | 8.703159e-48 |
| MsG0080048210.01 | MsG0780041754.01 | 0.812956 | 3.265508e-51 | 2.104679e-48 |
| MsG0080048210.01 | MsG0880043001.01 | 0.820135 | 8.047381e-53 | 6.314892e-50 |
| MsG0080048210.01 | MsG0880043287.01 | 0.806457 | 8.151522e-50 | 4.426635e-47 |
| MsG0080048210.01 | MsG0880043288.01 | 0.803526 | 3.342534e-49 | 1.683609e-46 |
| MsG0080048210.01 | MsG0880043292.01 | 0.802105 | 6.569532e-49 | 3.190806e-46 |
| MsG0080048210.01 | MsG0880043341.01 | 0.812997 | 3.198524e-51 | 2.063930e-48 |
| MsG0080048210.01 | MsG0880043489.01 | 0.810839 | 9.439970e-51 | 5.751809e-48 |
| MsG0080048210.01 | MsG0880044075.01 | 0.802179 | 6.342448e-49 | 3.086337e-46 |
| MsG0080048210.01 | MsG0880045106.01 | 0.847304 | 1.258441e-59 | 2.227014e-56 |
| MsG0080048210.01 | MsG0880045914.01 | 0.841374 | 4.941154e-58 | 7.245833e-55 |
| MsG0080048210.01 | MsG0880046047.01 | 0.802569 | 5.271505e-49 | 2.590813e-46 |
| MsG0080048210.01 | MsG0880046244.01 | 0.828673 | 7.890371e-55 | 7.896335e-52 |
| MsG0080048210.01 | MsG0880046329.01 | 0.815951 | 7.104862e-52 | 4.967731e-49 |
| MsG0080048210.01 | MsG0880046404.01 | 0.816770 | 4.660533e-52 | 3.332466e-49 |
| MsG0080048210.01 | MsG0880046560.01 | 0.827027 | 1.962808e-54 | 1.872228e-51 |
| MsG0080048210.01 | MsG0880046561.01 | 0.804773 | 1.839298e-49 | 9.565973e-47 |
| MsG0080048210.01 | MsG0880046642.01 | 0.810019 | 1.419330e-50 | 8.462616e-48 |
| MsG0080048210.01 | MsG0880047437.01 | 0.817786 | 2.752740e-52 | 2.023967e-49 |
| MsG0080048210.01 | MsG0880047497.01 | 0.801157 | 1.027752e-48 | 4.873727e-46 |
| MsG0080048210.01 | MsG0880047590.01 | 0.829769 | 4.276096e-55 | 4.419570e-52 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048210.01.T01 | MTR_7g109350 | 64.229 | 506 | 95 | 6 | 13 | 432 | 146 | 651 | 0.0 | 603 |
| MsG0080048210.01.T01 | MTR_1g087330 | 87.405 | 262 | 5 | 1 | 41 | 274 | 265 | 526 | 3.45e-162 | 469 |
| MsG0080048210.01.T01 | MTR_7g117280 | 49.405 | 336 | 129 | 5 | 69 | 373 | 342 | 667 | 2.69e-98 | 309 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048210.01.T01 | AT1G02660 | 61.276 | 439 | 129 | 7 | 41 | 447 | 284 | 713 | 3.24e-176 | 510 |
| MsG0080048210.01.T01 | AT3G62590 | 56.019 | 432 | 117 | 5 | 42 | 444 | 250 | 637 | 2.36e-151 | 445 |
| MsG0080048210.01.T01 | AT3G61680 | 52.038 | 319 | 119 | 2 | 79 | 369 | 313 | 625 | 1.25e-107 | 332 |
| MsG0080048210.01.T01 | AT3G61680 | 52.038 | 319 | 119 | 2 | 79 | 369 | 313 | 625 | 1.25e-107 | 332 |
| MsG0080048210.01.T01 | AT3G61680 | 52.038 | 319 | 119 | 2 | 79 | 369 | 313 | 625 | 1.25e-107 | 332 |
Find 107 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGATACCCTCCTCACATTT+TGG | 0.176578 | contig244end:+6179 | None:intergenic |
| GCCATCAAAGATGCCACTTC+TGG | 0.258188 | contig244end:+5102 | None:intergenic |
| TACGGATTTGGTTAAGTTCT+TGG | 0.258950 | contig244end:+3743 | None:intergenic |
| CCCCGCTAGGATGTTAATAT+TGG | 0.259715 | contig244end:-3503 | MsG0080048210.01.T01:CDS |
| CCCGCTAGGATGTTAATATT+GGG | 0.277460 | contig244end:-3502 | MsG0080048210.01.T01:CDS |
| CTCTCATCGATTTACGGATT+TGG | 0.278709 | contig244end:+3731 | None:intergenic |
| CTACTTCCTGTGATAACATT+TGG | 0.282356 | contig244end:-4388 | MsG0080048210.01.T01:CDS |
| CAGGAAGAGAGTCCTTAAAA+AGG | 0.312198 | contig244end:-3579 | MsG0080048210.01.T01:CDS |
| CTAAGCGACCGATCTGCTTA+TGG | 0.315887 | contig244end:-3835 | MsG0080048210.01.T01:CDS |
| CGTTTCATATCATTCATCTA+AGG | 0.322188 | contig244end:+3461 | None:intergenic |
| TTTAGGTGAGCATGAACTTC+TGG | 0.322356 | contig244end:+4523 | None:intergenic |
| AATGAAATTACCTTGATATT+CGG | 0.339215 | contig244end:+6097 | None:intergenic |
| AGCTTCTTGTCTGTGTCATT+AGG | 0.355284 | contig244end:+3907 | None:intergenic |
| CTTGGTGAAAATTTCTCATC+TGG | 0.355394 | contig244end:+3988 | None:intergenic |
| AAATGTGAGGAGGGTATCTT+TGG | 0.359701 | contig244end:-6176 | MsG0080048210.01.T01:CDS |
| CATGTCATGATCTCTTTGTA+TGG | 0.368198 | contig244end:+3801 | None:intergenic |
| CTTGATATTCGGTATAGAAT+AGG | 0.376193 | contig244end:+6108 | None:intergenic |
| CTTCTGGGTTCATCATGTTA+AGG | 0.396877 | contig244end:+5118 | None:intergenic |
| CCCAGAAGTGGCATCTTTGA+TGG | 0.414006 | contig244end:-5103 | MsG0080048210.01.T01:CDS |
| GACCGATCTGCTTATGGATC+TGG | 0.430432 | contig244end:-3829 | MsG0080048210.01.T01:CDS |
| CTCATTCATCACCTTGTGAA+TGG | 0.430466 | contig244end:-5002 | MsG0080048210.01.T01:CDS |
| CCATCAAAGATGCCACTTCT+GGG | 0.435070 | contig244end:+5103 | None:intergenic |
| CTTGCACATGGCTTCGCGGC+AGG | 0.435289 | contig244end:+4317 | None:intergenic |
| CAACGCCAGTCACCATTCTC+TGG | 0.447321 | contig244end:-3613 | MsG0080048210.01.T01:CDS |
| GACAGCAGTGGTTGCGGCAA+AGG | 0.448188 | contig244end:-5064 | MsG0080048210.01.T01:CDS |
| TAGAATAGGCCAAGCTTCCT+AGG | 0.450387 | contig244end:+6122 | None:intergenic |
| CGTTTCACTGGACATTCCCT+CGG | 0.452882 | contig244end:-4475 | MsG0080048210.01.T01:CDS |
| GTTCAAGAACGTCAACTTTG+CGG | 0.456069 | contig244end:+3879 | None:intergenic |
| CCCAATATTAACATCCTAGC+GGG | 0.466105 | contig244end:+3502 | None:intergenic |
| TTGATACCAGCATTGTCGTT+GGG | 0.478807 | contig244end:-3663 | MsG0080048210.01.T01:CDS |
| CGTTGGGAGGTCCATGGTAT+CGG | 0.487765 | contig244end:-3647 | MsG0080048210.01.T01:CDS |
| ACTTCTTCAAATGCAGCGGC+TGG | 0.497103 | contig244end:-5159 | MsG0080048210.01.T01:CDS |
| ACATTCCCTCGGTGGAAGCT+TGG | 0.501440 | contig244end:-4464 | MsG0080048210.01.T01:CDS |
| GTCTTCATCATGCCAGAGAA+TGG | 0.506152 | contig244end:+3601 | None:intergenic |
| GTATATATGAGGCTGCTAAA+GGG | 0.510063 | contig244end:-4564 | MsG0080048210.01.T01:CDS |
| TTCAGTGACAGCAGTGGTTG+CGG | 0.512338 | contig244end:-5070 | MsG0080048210.01.T01:CDS |
| ACACAAACAAATGCATGTGT+TGG | 0.513627 | contig244end:+3536 | None:intergenic |
| GGTATATATGAGGCTGCTAA+AGG | 0.517913 | contig244end:-4565 | MsG0080048210.01.T01:CDS |
| CCGCTAGGATGTTAATATTG+GGG | 0.521427 | contig244end:-3501 | MsG0080048210.01.T01:CDS |
| AAGCTACTATATACACCAAT+GGG | 0.525949 | contig244end:-4030 | MsG0080048210.01.T01:CDS |
| TTCTCTGGCATGATGAAGAC+AGG | 0.527110 | contig244end:-3598 | MsG0080048210.01.T01:CDS |
| ATTGCTTGCACATGGCTTCG+CGG | 0.529304 | contig244end:+4313 | None:intergenic |
| CGCTAGGATGTTAATATTGG+GGG | 0.531018 | contig244end:-3500 | MsG0080048210.01.T01:CDS |
| CTATTCTATACCGAATATCA+AGG | 0.531380 | contig244end:-6107 | MsG0080048210.01.T01:intron |
| CACAAACAAATGCATGTGTT+GGG | 0.531684 | contig244end:+3537 | None:intergenic |
| GATGTCACACCTAGGAAGCT+TGG | 0.533598 | contig244end:-6131 | MsG0080048210.01.T01:CDS |
| CATATATACCTCTGTGCACA+AGG | 0.536219 | contig244end:+4578 | None:intergenic |
| TCAAATGCAGCGGCTGGTGA+AGG | 0.538184 | contig244end:-5153 | MsG0080048210.01.T01:CDS |
| AGAATCAGCAGTTCACCCAT+TGG | 0.541997 | contig244end:+4015 | None:intergenic |
| AGAACGTCAACTTTGCGGCT+CGG | 0.546820 | contig244end:+3884 | None:intergenic |
| GGTTCCCCTTCCATCATGTG+TGG | 0.551578 | contig244end:-4367 | MsG0080048210.01.T01:CDS |
| CGCCTCCACACATGATGGAA+GGG | 0.552230 | contig244end:+4362 | None:intergenic |
| GGACCTCCCAACGACAATGC+TGG | 0.555022 | contig244end:+3657 | None:intergenic |
| GCATTATAATTGCTTGCACA+TGG | 0.556815 | contig244end:+4305 | None:intergenic |
| AGCAGTGGTTGCGGCAAAGG+AGG | 0.558429 | contig244end:-5061 | MsG0080048210.01.T01:CDS |
| GGCAAAGGAGGAAGTAAAGC+AGG | 0.560431 | contig244end:-5049 | MsG0080048210.01.T01:CDS |
| GCTGCATTTGAAGAAGTGAA+TGG | 0.563038 | contig244end:+5165 | None:intergenic |
| CTTAGTATCTCAAGTGGATG+AGG | 0.565135 | contig244end:+3853 | None:intergenic |
| AATCTTCTGCCACAAGGCAG+TGG | 0.565488 | contig244end:-3961 | MsG0080048210.01.T01:CDS |
| GAAGCTACTATATACACCAA+TGG | 0.568517 | contig244end:-4031 | MsG0080048210.01.T01:CDS |
| CGATCTGCTTATGGATCTGG+AGG | 0.572142 | contig244end:-3826 | MsG0080048210.01.T01:CDS |
| TTTACTTGGTTATTGAGACA+TGG | 0.572898 | contig244end:+4190 | None:intergenic |
| TTACTTGGTTATTGAGACAT+GGG | 0.574179 | contig244end:+4191 | None:intergenic |
| GAGAGAAAAGACGCAAGGTA+TGG | 0.574710 | contig244end:-3711 | MsG0080048210.01.T01:CDS |
| CATTGTCGTTGGGAGGTCCA+TGG | 0.579194 | contig244end:-3653 | MsG0080048210.01.T01:CDS |
| CTCGTTTCCAAAATGTGAGG+AGG | 0.581960 | contig244end:-6186 | MsG0080048210.01.T01:CDS |
| TCGCCTCCACACATGATGGA+AGG | 0.582366 | contig244end:+4361 | None:intergenic |
| TCCATGGTATCGGTCAGTAT+CGG | 0.583827 | contig244end:-3637 | MsG0080048210.01.T01:CDS |
| GGGGAACCAAATGTTATCAC+AGG | 0.584190 | contig244end:+4382 | None:intergenic |
| GCCGATACTGACCGATACCA+TGG | 0.588719 | contig244end:+3636 | None:intergenic |
| TGTGCACAGAGGTATATATG+AGG | 0.594337 | contig244end:-4575 | MsG0080048210.01.T01:CDS |
| GACACTCTACTTGAAAAGCT+TGG | 0.594758 | contig244end:-4340 | MsG0080048210.01.T01:CDS |
| CTCCAGATCCATAAGCAGAT+CGG | 0.594796 | contig244end:+3827 | None:intergenic |
| GTTGATACCAGCATTGTCGT+TGG | 0.595106 | contig244end:-3664 | MsG0080048210.01.T01:CDS |
| TTCACTGGACATTCCCTCGG+TGG | 0.596662 | contig244end:-4472 | MsG0080048210.01.T01:CDS |
| AGTGTCGCCTCCACACATGA+TGG | 0.598823 | contig244end:+4357 | None:intergenic |
| AGAAAAGACGCAAGGTATGG+TGG | 0.599163 | contig244end:-3708 | MsG0080048210.01.T01:CDS |
| GCCTCCACACATGATGGAAG+GGG | 0.599219 | contig244end:+4363 | None:intergenic |
| TCCCCTTCCATCATGTGTGG+AGG | 0.601542 | contig244end:-4364 | MsG0080048210.01.T01:CDS |
| TAACATGATGAACCCAGAAG+TGG | 0.602277 | contig244end:-5115 | MsG0080048210.01.T01:CDS |
| CGGTCGCTTAGTATCTCAAG+TGG | 0.603013 | contig244end:+3847 | None:intergenic |
| TAGTGCCAAGCTTCCACCGA+GGG | 0.603611 | contig244end:+4459 | None:intergenic |
| CAGAGAATGGTGACTGGCGT+TGG | 0.604405 | contig244end:+3614 | None:intergenic |
| ATTCACTTCTTCAAATGCAG+CGG | 0.610395 | contig244end:-5163 | MsG0080048210.01.T01:CDS |
| TCATGCCAGAGAATGGTGAC+TGG | 0.611352 | contig244end:+3608 | None:intergenic |
| ATACCAGCATTGTCGTTGGG+AGG | 0.626126 | contig244end:-3660 | MsG0080048210.01.T01:CDS |
| TCGTTTCCAAAATGTGAGGA+GGG | 0.626410 | contig244end:-6185 | MsG0080048210.01.T01:CDS |
| AGTCATAATCTTCTGCCACA+AGG | 0.639756 | contig244end:-3967 | MsG0080048210.01.T01:CDS |
| ACACGTCGCGGTAATACAAG+AGG | 0.642532 | contig244end:+3685 | None:intergenic |
| GATGAGAGAGAAAAGACGCA+AGG | 0.645692 | contig244end:-3716 | MsG0080048210.01.T01:CDS |
| AGATATAGACCACTGCCTTG+TGG | 0.650514 | contig244end:+3952 | None:intergenic |
| GTGTCATTAGGTTCTGACAA+AGG | 0.658626 | contig244end:+3919 | None:intergenic |
| ACAGGAAGTAGAGAGGTGAC+TGG | 0.671355 | contig244end:+4400 | None:intergenic |
| CATGCTCACCTAAAATCTCG+AGG | 0.672833 | contig244end:-4514 | MsG0080048210.01.T01:CDS |
| TACTGATTCAGTGACAGCAG+TGG | 0.675088 | contig244end:-5076 | MsG0080048210.01.T01:CDS |
| AAACTCGTTTCCAAAATGTG+AGG | 0.679500 | contig244end:-6189 | MsG0080048210.01.T01:CDS |
| TGTTATCACAGGAAGTAGAG+AGG | 0.682469 | contig244end:+4393 | None:intergenic |
| TATGCTCAGATGTCACACCT+AGG | 0.687106 | contig244end:-6139 | MsG0080048210.01.T01:CDS |
| TCGCAGATGAACCATTCACA+AGG | 0.696334 | contig244end:+4991 | None:intergenic |
| TGTGGCAGAAGATTATGACT+TGG | 0.697511 | contig244end:+3970 | None:intergenic |
| CCCCAATATTAACATCCTAG+CGG | 0.702924 | contig244end:+3501 | None:intergenic |
| CCAATATTAACATCCTAGCG+GGG | 0.705533 | contig244end:+3503 | None:intergenic |
| TTGGATGTCCTTGTGCACAG+AGG | 0.729769 | contig244end:-4586 | MsG0080048210.01.T01:CDS |
| ATCTGCGATGATAACCAGAG+TGG | 0.733794 | contig244end:-4976 | MsG0080048210.01.T01:intron |
| TAATTGCAAGAAAATGCTCG+CGG | 0.749108 | contig244end:+4268 | None:intergenic |
| ATGCTGGTATCAACACGTCG+CGG | 0.763137 | contig244end:+3673 | None:intergenic |
| GTAGTGCCAAGCTTCCACCG+AGG | 0.785580 | contig244end:+4458 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAAATTTGATAAAGTA+TGG | - | contig244end:4836-4855 | MsG0080048210.01.T01:intron | 10.0% |
| !! | AATAAAATTTGATAAAGTAT+GGG | - | contig244end:4837-4856 | MsG0080048210.01.T01:intron | 10.0% |
| !!! | TTATCAAATTTTATTTTTAG+CGG | + | contig244end:4832-4851 | None:intergenic | 10.0% |
| !! | AACTTAAAAGATTGAATATT+TGG | + | contig244end:5570-5589 | None:intergenic | 15.0% |
| !! | ATAAAATTTGATAAAGTATG+GGG | - | contig244end:4838-4857 | MsG0080048210.01.T01:intron | 15.0% |
| !! | GTATTTAATTATATCTGAAA+AGG | - | contig244end:5041-5060 | MsG0080048210.01.T01:CDS | 15.0% |
| !! | TAAAATTAAAAGACAAACTT+TGG | + | contig244end:3879-3898 | None:intergenic | 15.0% |
| !!! | AAGAAAAAACATAAACTTTT+TGG | + | contig244end:5537-5556 | None:intergenic | 15.0% |
| !! | AATGAAATTACCTTGATATT+CGG | + | contig244end:3588-3607 | None:intergenic | 20.0% |
| !!! | TATGTTTTTTCTTTACTGAT+AGG | - | contig244end:5544-5563 | MsG0080048210.01.T01:intron | 20.0% |
| !!! | TATTTTGTTTTTTTGTGATC+TGG | - | contig244end:3770-3789 | MsG0080048210.01.T01:CDS | 20.0% |
| !!! | TTTGTCTTTTAATTTTAGCA+TGG | - | contig244end:3882-3901 | MsG0080048210.01.T01:CDS | 20.0% |
| !!! | TTTTTTTCATTATTGTCGAA+GGG | - | contig244end:4948-4967 | MsG0080048210.01.T01:intron | 20.0% |
| !!! | TTTTTTTTCATTATTGTCGA+AGG | - | contig244end:4947-4966 | MsG0080048210.01.T01:intron | 20.0% |
| ! | ATTATGGATAGGTGTATATA+TGG | - | contig244end:3994-4013 | MsG0080048210.01.T01:CDS | 25.0% |
| ! | GAAATTTGATTATTTAGCCA+GGG | - | contig244end:4273-4292 | MsG0080048210.01.T01:CDS | 25.0% |
| ! | GCAATTACCTCAAATTTAAT+TGG | + | contig244end:4906-4925 | None:intergenic | 25.0% |
| ! | GGTATATAAATTATACTCCT+TGG | - | contig244end:4776-4795 | MsG0080048210.01.T01:intron | 25.0% |
| ! | GTTTGTAAATTGTTCATTCA+TGG | - | contig244end:3728-3747 | MsG0080048210.01.T01:CDS | 25.0% |
| ! | TCCATTTCAGAACATATAAT+AGG | + | contig244end:4197-4216 | None:intergenic | 25.0% |
| ! | TGAAATTTGATTATTTAGCC+AGG | - | contig244end:4272-4291 | MsG0080048210.01.T01:CDS | 25.0% |
| !! | GGAGATTAATTTTTGTTCTT+TGG | - | contig244end:4755-4774 | MsG0080048210.01.T01:intron | 25.0% |
| !! | TTGTTTAGATTTGTGCTTTT+TGG | - | contig244end:3640-3659 | MsG0080048210.01.T01:CDS | 25.0% |
| !! | TTTTGAGCCAATTAAATTTG+AGG | - | contig244end:4896-4915 | MsG0080048210.01.T01:intron | 25.0% |
| !!! | AAGATTTTTGTTATTCAGGT+AGG | - | contig244end:4732-4751 | MsG0080048210.01.T01:intron | 25.0% |
| !!! | ACCTATTATATGTTCTGAAA+TGG | - | contig244end:4193-4212 | MsG0080048210.01.T01:intron | 25.0% |
| !!! | AGATTTTTGTTATTCAGGTA+GGG | - | contig244end:4733-4752 | MsG0080048210.01.T01:intron | 25.0% |
| !!! | GCTTTTTGGTTATTAGATTT+TGG | - | contig244end:3654-3673 | MsG0080048210.01.T01:CDS | 25.0% |
| !!! | GTACAAGATTTTTGTTATTC+AGG | - | contig244end:4728-4747 | MsG0080048210.01.T01:intron | 25.0% |
| !!! | TAGTGTGATTTTTTCAACTA+TGG | - | contig244end:4167-4186 | MsG0080048210.01.T01:intron | 25.0% |
| !!! | TTACACATTTTTTTTACCCA+GGG | - | contig244end:5073-5092 | MsG0080048210.01.T01:CDS | 25.0% |
| !!! | TTTACACATTTTTTTTACCC+AGG | - | contig244end:5072-5091 | MsG0080048210.01.T01:CDS | 25.0% |
| !!! | TTTTTTCATTATTGTCGAAG+GGG | - | contig244end:4949-4968 | MsG0080048210.01.T01:intron | 25.0% |
| AAAATCTGAGAAAATTCCTC+AGG | - | contig244end:4362-4381 | MsG0080048210.01.T01:CDS | 30.0% | |
| AAGCTACTATATACACCAAT+GGG | - | contig244end:5652-5671 | MsG0080048210.01.T01:intron | 30.0% | |
| ATCCTATATCCACCATTATT+TGG | + | contig244end:4425-4444 | None:intergenic | 30.0% | |
| ATTTGATAAAGTATGGGGTT+CGG | - | contig244end:4843-4862 | MsG0080048210.01.T01:intron | 30.0% | |
| CCATGTTGCAAAAATCTTAA+AGG | - | contig244end:5443-5462 | MsG0080048210.01.T01:intron | 30.0% | |
| CTATTCTATACCGAATATCA+AGG | - | contig244end:3575-3594 | MsG0080048210.01.T01:CDS | 30.0% | |
| CTGCAGTAAAAAAACACAAA+AGG | + | contig244end:5632-5651 | None:intergenic | 30.0% | |
| CTTAAACTTGACTAGACAAT+GGG | - | contig244end:4047-4066 | MsG0080048210.01.T01:intron | 30.0% | |
| CTTGATATTCGGTATAGAAT+AGG | + | contig244end:3577-3596 | None:intergenic | 30.0% | |
| GAGAAAGAAGAAAAACAACA+AGG | + | contig244end:3830-3849 | None:intergenic | 30.0% | |
| GGGAAACTCTTAAAACATTA+CGG | - | contig244end:4293-4312 | MsG0080048210.01.T01:CDS | 30.0% | |
| TCGCTAGAGAAAAAAAGAAT+TGG | - | contig244end:4335-4354 | MsG0080048210.01.T01:CDS | 30.0% | |
| TTAAACTTGACTAGACAATG+GGG | - | contig244end:4048-4067 | MsG0080048210.01.T01:intron | 30.0% | |
| TTACTTGGTTATTGAGACAT+GGG | + | contig244end:5494-5513 | None:intergenic | 30.0% | |
| TTTAATTCAAAACCCTCAGT+AGG | - | contig244end:4018-4037 | MsG0080048210.01.T01:CDS | 30.0% | |
| TTTACTTGGTTATTGAGACA+TGG | + | contig244end:5495-5514 | None:intergenic | 30.0% | |
| ! | CATAAACTTTTTGGATAAGC+AGG | + | contig244end:5528-5547 | None:intergenic | 30.0% |
| ! | GTTTTATGCAAAGCTAAATG+AGG | + | contig244end:4128-4147 | None:intergenic | 30.0% |
| ! | TTTTTCATTATTGTCGAAGG+GGG | - | contig244end:4950-4969 | MsG0080048210.01.T01:intron | 30.0% |
| !!! | CCTTTAAGATTTTTGCAACA+TGG | + | contig244end:5446-5465 | None:intergenic | 30.0% |
| !!! | GATTTTTGTTATTCAGGTAG+GGG | - | contig244end:4734-4753 | MsG0080048210.01.T01:intron | 30.0% |
| !!! | TAATGTTTTAAGAGTTTCCC+TGG | + | contig244end:4293-4312 | None:intergenic | 30.0% |
| !!! | TTTTCTCTCTCATCGATTTA+CGG | + | contig244end:5960-5979 | None:intergenic | 30.0% |
| AAACTCGTTTCCAAAATGTG+AGG | - | contig244end:3493-3512 | MsG0080048210.01.T01:CDS | 35.0% | |
| AACCGCAATCGTTGATATTA+CGG | + | contig244end:3949-3968 | None:intergenic | 35.0% | |
| ACAAAAATCTTGTACCACTC+TGG | + | contig244end:4723-4742 | None:intergenic | 35.0% | |
| ACACAAACAAATGCATGTGT+TGG | + | contig244end:6149-6168 | None:intergenic | 35.0% | |
| AGAGAAGCAAGAAGAAATCA+AGG | - | contig244end:4397-4416 | MsG0080048210.01.T01:CDS | 35.0% | |
| AGAGAGTCCTTAAAAAGGTT+TGG | - | contig244end:6108-6127 | MsG0080048210.01.T01:CDS | 35.0% | |
| ATTCACTTCTTCAAATGCAG+CGG | - | contig244end:4519-4538 | MsG0080048210.01.T01:CDS | 35.0% | |
| CACAAACAAATGCATGTGTT+GGG | + | contig244end:6148-6167 | None:intergenic | 35.0% | |
| CATGTCATGATCTCTTTGTA+TGG | + | contig244end:5884-5903 | None:intergenic | 35.0% | |
| CTACTTCCTGTGATAACATT+TGG | - | contig244end:5294-5313 | MsG0080048210.01.T01:intron | 35.0% | |
| CTTGGTGAAAATTTCTCATC+TGG | + | contig244end:5697-5716 | None:intergenic | 35.0% | |
| GAAATCAAGGAGCCAAATAA+TGG | - | contig244end:4410-4429 | MsG0080048210.01.T01:CDS | 35.0% | |
| GAAGCTACTATATACACCAA+TGG | - | contig244end:5651-5670 | MsG0080048210.01.T01:intron | 35.0% | |
| GCATTATAATTGCTTGCACA+TGG | + | contig244end:5380-5399 | None:intergenic | 35.0% | |
| GCTTAAACTTGACTAGACAA+TGG | - | contig244end:4046-4065 | MsG0080048210.01.T01:intron | 35.0% | |
| GTATATATGAGGCTGCTAAA+GGG | - | contig244end:5118-5137 | MsG0080048210.01.T01:CDS | 35.0% | |
| TAATTGCAAGAAAATGCTCG+CGG | + | contig244end:5417-5436 | None:intergenic | 35.0% | |
| TCTTCTTTCTCAGCTTGAAT+GGG | - | contig244end:3839-3858 | MsG0080048210.01.T01:CDS | 35.0% | |
| TTCTTCTTTCTCAGCTTGAA+TGG | - | contig244end:3838-3857 | MsG0080048210.01.T01:CDS | 35.0% | |
| TTTAAGCGAAAACCTACTGA+GGG | + | contig244end:4033-4052 | None:intergenic | 35.0% | |
| ! | AAGATTTTTGCAACATGGTC+AGG | + | contig244end:5441-5460 | None:intergenic | 35.0% |
| ! | AAGCCTACCAAACCTTTTTA+AGG | + | contig244end:6118-6137 | None:intergenic | 35.0% |
| ! | AGATTTTTGCAACATGGTCA+GGG | + | contig244end:5440-5459 | None:intergenic | 35.0% |
| ! | AGTCCTTAAAAAGGTTTGGT+AGG | - | contig244end:6112-6131 | MsG0080048210.01.T01:CDS | 35.0% |
| ! | TACGGATTTGGTTAAGTTCT+TGG | + | contig244end:5942-5961 | None:intergenic | 35.0% |
| ! | TGTTCATTCATGGTTTTTCG+AGG | - | contig244end:3738-3757 | MsG0080048210.01.T01:CDS | 35.0% |
| !! | ACTACGTGATGCATTGATTA+TGG | - | contig244end:3978-3997 | MsG0080048210.01.T01:CDS | 35.0% |
| !! | AGCCAAATAATGGTGGATAT+AGG | - | contig244end:4420-4439 | MsG0080048210.01.T01:CDS | 35.0% |
| !! | GTGATGCATTGATTATGGAT+AGG | - | contig244end:3983-4002 | MsG0080048210.01.T01:CDS | 35.0% |
| !!! | ACATTTTTTTTACCCAGGGT+TGG | - | contig244end:5077-5096 | MsG0080048210.01.T01:CDS | 35.0% |
| AATCTTACTAGCTGCAACCA+AGG | + | contig244end:4796-4815 | None:intergenic | 40.0% | |
| AGTCATAATCTTCTGCCACA+AGG | - | contig244end:5715-5734 | MsG0080048210.01.T01:intron | 40.0% | |
| ATCAAGGAGCCAAATAATGG+TGG | - | contig244end:4413-4432 | MsG0080048210.01.T01:CDS | 40.0% | |
| CAGGAAGAGAGTCCTTAAAA+AGG | - | contig244end:6103-6122 | MsG0080048210.01.T01:intron | 40.0% | |
| CATATATACCTCTGTGCACA+AGG | + | contig244end:5107-5126 | None:intergenic | 40.0% | |
| CCAATATTAACATCCTAGCG+GGG | + | contig244end:6182-6201 | None:intergenic | 40.0% | |
| CCCAATATTAACATCCTAGC+GGG | + | contig244end:6183-6202 | None:intergenic | 40.0% | |
| CCCCAATATTAACATCCTAG+CGG | + | contig244end:6184-6203 | None:intergenic | 40.0% | |
| CCCGCTAGGATGTTAATATT+GGG | - | contig244end:6180-6199 | MsG0080048210.01.T01:CDS | 40.0% | |
| CCGCTAGGATGTTAATATTG+GGG | - | contig244end:6181-6200 | MsG0080048210.01.T01:CDS | 40.0% | |
| CGCTAGGATGTTAATATTGG+GGG | - | contig244end:6182-6201 | MsG0080048210.01.T01:CDS | 40.0% | |
| CTCATTCATCACCTTGTGAA+TGG | - | contig244end:4680-4699 | MsG0080048210.01.T01:intron | 40.0% | |
| CTTAGTATCTCAAGTGGATG+AGG | + | contig244end:5832-5851 | None:intergenic | 40.0% | |
| CTTCTGGGTTCATCATGTTA+AGG | + | contig244end:4567-4586 | None:intergenic | 40.0% | |
| CTTCTTTCTCAGCTTGAATG+GGG | - | contig244end:3840-3859 | MsG0080048210.01.T01:CDS | 40.0% | |
| GACACTCTACTTGAAAAGCT+TGG | - | contig244end:5342-5361 | MsG0080048210.01.T01:intron | 40.0% | |
| GCTGCATTTGAAGAAGTGAA+TGG | + | contig244end:4520-4539 | None:intergenic | 40.0% | |
| GGTATATATGAGGCTGCTAA+AGG | - | contig244end:5117-5136 | MsG0080048210.01.T01:CDS | 40.0% | |
| GTGGATATAGGATAGTGCAA+CGG | - | contig244end:4432-4451 | MsG0080048210.01.T01:CDS | 40.0% | |
| GTTCAAGAACGTCAACTTTG+CGG | + | contig244end:5806-5825 | None:intergenic | 40.0% | |
| GTTTAAGCGAAAACCTACTG+AGG | + | contig244end:4034-4053 | None:intergenic | 40.0% | |
| TAACATGATGAACCCAGAAG+TGG | - | contig244end:4567-4586 | MsG0080048210.01.T01:CDS | 40.0% | |
| TCGTTTCCAAAATGTGAGGA+GGG | - | contig244end:3497-3516 | MsG0080048210.01.T01:CDS | 40.0% | |
| TGCCGTAATATCAACGATTG+CGG | - | contig244end:3944-3963 | MsG0080048210.01.T01:CDS | 40.0% | |
| TGTGGCAGAAGATTATGACT+TGG | + | contig244end:5715-5734 | None:intergenic | 40.0% | |
| TGTTATCACAGGAAGTAGAG+AGG | + | contig244end:5292-5311 | None:intergenic | 40.0% | |
| TTCTTTCTCAGCTTGAATGG+GGG | - | contig244end:3841-3860 | MsG0080048210.01.T01:CDS | 40.0% | |
| TTGATACCAGCATTGTCGTT+GGG | - | contig244end:6019-6038 | MsG0080048210.01.T01:intron | 40.0% | |
| TTTAGGTGAGCATGAACTTC+TGG | + | contig244end:5162-5181 | None:intergenic | 40.0% | |
| ! | AAGATACCCTCCTCACATTT+TGG | + | contig244end:3506-3525 | None:intergenic | 40.0% |
| ! | AGCTTCTTGTCTGTGTCATT+AGG | + | contig244end:5778-5797 | None:intergenic | 40.0% |
| ! | CTCTTTATTTCGACTTCCTG+AGG | + | contig244end:4381-4400 | None:intergenic | 40.0% |
| ! | GTGTCATTAGGTTCTGACAA+AGG | + | contig244end:5766-5785 | None:intergenic | 40.0% |
| ! | TGTGCACAGAGGTATATATG+AGG | - | contig244end:5107-5126 | MsG0080048210.01.T01:CDS | 40.0% |
| !! | AAATGTGAGGAGGGTATCTT+TGG | - | contig244end:3506-3525 | MsG0080048210.01.T01:CDS | 40.0% |
| !! | CTCTCATCGATTTACGGATT+TGG | + | contig244end:5954-5973 | None:intergenic | 40.0% |
| AGAAAAGACGCAAGGTATGG+TGG | - | contig244end:5974-5993 | MsG0080048210.01.T01:intron | 45.0% | |
| AGAATCAGCAGTTCACCCAT+TGG | + | contig244end:5670-5689 | None:intergenic | 45.0% | |
| AGATATAGACCACTGCCTTG+TGG | + | contig244end:5733-5752 | None:intergenic | 45.0% | |
| ATCTGCGATGATAACCAGAG+TGG | - | contig244end:4706-4725 | MsG0080048210.01.T01:intron | 45.0% | |
| CATGCTCACCTAAAATCTCG+AGG | - | contig244end:5168-5187 | MsG0080048210.01.T01:CDS | 45.0% | |
| CCCCGCTAGGATGTTAATAT+TGG | - | contig244end:6179-6198 | MsG0080048210.01.T01:CDS | 45.0% | |
| CTCCAGATCCATAAGCAGAT+CGG | + | contig244end:5858-5877 | None:intergenic | 45.0% | |
| CTCGTTTCCAAAATGTGAGG+AGG | - | contig244end:3496-3515 | MsG0080048210.01.T01:CDS | 45.0% | |
| GAGAGAAAAGACGCAAGGTA+TGG | - | contig244end:5971-5990 | MsG0080048210.01.T01:intron | 45.0% | |
| GATGAGAGAGAAAAGACGCA+AGG | - | contig244end:5966-5985 | MsG0080048210.01.T01:intron | 45.0% | |
| GGGGAACCAAATGTTATCAC+AGG | + | contig244end:5303-5322 | None:intergenic | 45.0% | |
| GTCTTCATCATGCCAGAGAA+TGG | + | contig244end:6084-6103 | None:intergenic | 45.0% | |
| GTTGATACCAGCATTGTCGT+TGG | - | contig244end:6018-6037 | MsG0080048210.01.T01:intron | 45.0% | |
| TAGAATAGGCCAAGCTTCCT+AGG | + | contig244end:3563-3582 | None:intergenic | 45.0% | |
| TATGCTCAGATGTCACACCT+AGG | - | contig244end:3543-3562 | MsG0080048210.01.T01:CDS | 45.0% | |
| TCGCAGATGAACCATTCACA+AGG | + | contig244end:4694-4713 | None:intergenic | 45.0% | |
| TTCTCTGGCATGATGAAGAC+AGG | - | contig244end:6084-6103 | MsG0080048210.01.T01:intron | 45.0% | |
| ! | CACGAGAACCTCGAGATTTT+AGG | + | contig244end:5179-5198 | None:intergenic | 45.0% |
| ! | CCATCAAAGATGCCACTTCT+GGG | + | contig244end:4582-4601 | None:intergenic | 45.0% |
| ! | CGTGCAACTTTTCGTTTCAC+TGG | - | contig244end:5195-5214 | MsG0080048210.01.T01:intron | 45.0% |
| !! | TACTGATTCAGTGACAGCAG+TGG | - | contig244end:4606-4625 | MsG0080048210.01.T01:intron | 45.0% |
| !! | TCCATGGTATCGGTCAGTAT+CGG | - | contig244end:6045-6064 | MsG0080048210.01.T01:intron | 45.0% |
| !! | TTTTGGATAAGCAGGAGTGC+AGG | + | contig244end:5520-5539 | None:intergenic | 45.0% |
| !!! | TGTTGCTTTTTTTCCCCGCT+AGG | - | contig244end:6166-6185 | MsG0080048210.01.T01:CDS | 45.0% |
| AATCTTCTGCCACAAGGCAG+TGG | - | contig244end:5721-5740 | MsG0080048210.01.T01:intron | 50.0% | |
| ACACGTCGCGGTAATACAAG+AGG | + | contig244end:6000-6019 | None:intergenic | 50.0% | |
| ACAGGAAGTAGAGAGGTGAC+TGG | + | contig244end:5285-5304 | None:intergenic | 50.0% | |
| ACTTCTTCAAATGCAGCGGC+TGG | - | contig244end:4523-4542 | MsG0080048210.01.T01:CDS | 50.0% | |
| AGAACGTCAACTTTGCGGCT+CGG | + | contig244end:5801-5820 | None:intergenic | 50.0% | |
| ATACCAGCATTGTCGTTGGG+AGG | - | contig244end:6022-6041 | MsG0080048210.01.T01:intron | 50.0% | |
| ATGCTGGTATCAACACGTCG+CGG | + | contig244end:6012-6031 | None:intergenic | 50.0% | |
| ATTGCTTGCACATGGCTTCG+CGG | + | contig244end:5372-5391 | None:intergenic | 50.0% | |
| CCCAGAAGTGGCATCTTTGA+TGG | - | contig244end:4579-4598 | MsG0080048210.01.T01:CDS | 50.0% | |
| CGATCTGCTTATGGATCTGG+AGG | - | contig244end:5856-5875 | MsG0080048210.01.T01:intron | 50.0% | |
| CGGTCGCTTAGTATCTCAAG+TGG | + | contig244end:5838-5857 | None:intergenic | 50.0% | |
| CGTTTCACTGGACATTCCCT+CGG | - | contig244end:5207-5226 | MsG0080048210.01.T01:intron | 50.0% | |
| CTAAGCGACCGATCTGCTTA+TGG | - | contig244end:5847-5866 | MsG0080048210.01.T01:intron | 50.0% | |
| GACCGATCTGCTTATGGATC+TGG | - | contig244end:5853-5872 | MsG0080048210.01.T01:intron | 50.0% | |
| GATGTCACACCTAGGAAGCT+TGG | - | contig244end:3551-3570 | MsG0080048210.01.T01:CDS | 50.0% | |
| GGCAAAGGAGGAAGTAAAGC+AGG | - | contig244end:4633-4652 | MsG0080048210.01.T01:intron | 50.0% | |
| TCATGCCAGAGAATGGTGAC+TGG | + | contig244end:6077-6096 | None:intergenic | 50.0% | |
| TTCAGTGACAGCAGTGGTTG+CGG | - | contig244end:4612-4631 | MsG0080048210.01.T01:intron | 50.0% | |
| TTGGATGTCCTTGTGCACAG+AGG | - | contig244end:5096-5115 | MsG0080048210.01.T01:CDS | 50.0% | |
| ! | CAGGAGTGCAGGACTTTACT+TGG | + | contig244end:5509-5528 | None:intergenic | 50.0% |
| ! | GCCATCAAAGATGCCACTTC+TGG | + | contig244end:4583-4602 | None:intergenic | 50.0% |
| ACATTCCCTCGGTGGAAGCT+TGG | - | contig244end:5218-5237 | MsG0080048210.01.T01:intron | 55.0% | |
| AGTGTCGCCTCCACACATGA+TGG | + | contig244end:5328-5347 | None:intergenic | 55.0% | |
| CAACGCCAGTCACCATTCTC+TGG | - | contig244end:6069-6088 | MsG0080048210.01.T01:intron | 55.0% | |
| CAGAGAATGGTGACTGGCGT+TGG | + | contig244end:6071-6090 | None:intergenic | 55.0% | |
| CATTGTCGTTGGGAGGTCCA+TGG | - | contig244end:6029-6048 | MsG0080048210.01.T01:intron | 55.0% | |
| CGTTGGGAGGTCCATGGTAT+CGG | - | contig244end:6035-6054 | MsG0080048210.01.T01:intron | 55.0% | |
| GCACAAGGACATCCAACCCT+GGG | + | contig244end:5092-5111 | None:intergenic | 55.0% | |
| GCCGATACTGACCGATACCA+TGG | + | contig244end:6049-6068 | None:intergenic | 55.0% | |
| GGTTCCCCTTCCATCATGTG+TGG | - | contig244end:5315-5334 | MsG0080048210.01.T01:intron | 55.0% | |
| GTTCGGAGTCGTTAGCGTCT+TGG | - | contig244end:4860-4879 | MsG0080048210.01.T01:intron | 55.0% | |
| TAGTGCCAAGCTTCCACCGA+GGG | + | contig244end:5226-5245 | None:intergenic | 55.0% | |
| TCAAATGCAGCGGCTGGTGA+AGG | - | contig244end:4529-4548 | MsG0080048210.01.T01:CDS | 55.0% | |
| TCCCCTTCCATCATGTGTGG+AGG | - | contig244end:5318-5337 | MsG0080048210.01.T01:intron | 55.0% | |
| TGCACAAGGACATCCAACCC+TGG | + | contig244end:5093-5112 | None:intergenic | 55.0% | |
| TTCACTGGACATTCCCTCGG+TGG | - | contig244end:5210-5229 | MsG0080048210.01.T01:intron | 55.0% | |
| ! | CGCCTCCACACATGATGGAA+GGG | + | contig244end:5323-5342 | None:intergenic | 55.0% |
| ! | GCCTCCACACATGATGGAAG+GGG | + | contig244end:5322-5341 | None:intergenic | 55.0% |
| ! | TCGCCTCCACACATGATGGA+AGG | + | contig244end:5324-5343 | None:intergenic | 55.0% |
| AGCAGTGGTTGCGGCAAAGG+AGG | - | contig244end:4621-4640 | MsG0080048210.01.T01:intron | 60.0% | |
| GACAGCAGTGGTTGCGGCAA+AGG | - | contig244end:4618-4637 | MsG0080048210.01.T01:intron | 60.0% | |
| GGACCTCCCAACGACAATGC+TGG | + | contig244end:6028-6047 | None:intergenic | 60.0% | |
| GTAGTGCCAAGCTTCCACCG+AGG | + | contig244end:5227-5246 | None:intergenic | 60.0% | |
| CTTGCACATGGCTTCGCGGC+AGG | + | contig244end:5368-5387 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| contig244end | gene | 3474 | 6230 | 3474 | ID=MsG0080048210.01;Name=MsG0080048210.01 |
| contig244end | mRNA | 3474 | 6230 | 3474 | ID=MsG0080048210.01.T01;Parent=MsG0080048210.01;Name=MsG0080048210.01.T01;_AED=0.24;_eAED=0.24;_QI=0|0|0|1|1|1|4|0|447 |
| contig244end | exon | 6108 | 6230 | 6108 | ID=MsG0080048210.01.T01:exon:13495;Parent=MsG0080048210.01.T01 |
| contig244end | exon | 4977 | 5202 | 4977 | ID=MsG0080048210.01.T01:exon:13494;Parent=MsG0080048210.01.T01 |
| contig244end | exon | 4195 | 4610 | 4195 | ID=MsG0080048210.01.T01:exon:13493;Parent=MsG0080048210.01.T01 |
| contig244end | exon | 3474 | 4052 | 3474 | ID=MsG0080048210.01.T01:exon:13492;Parent=MsG0080048210.01.T01 |
| contig244end | CDS | 6108 | 6230 | 6108 | ID=MsG0080048210.01.T01:cds;Parent=MsG0080048210.01.T01 |
| contig244end | CDS | 4977 | 5202 | 4977 | ID=MsG0080048210.01.T01:cds;Parent=MsG0080048210.01.T01 |
| contig244end | CDS | 4195 | 4610 | 4195 | ID=MsG0080048210.01.T01:cds;Parent=MsG0080048210.01.T01 |
| contig244end | CDS | 3474 | 4052 | 3474 | ID=MsG0080048210.01.T01:cds;Parent=MsG0080048210.01.T01 |
| Gene Sequence |
| Protein sequence |
