AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480022005.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022005.01.T01 MTR_4g080700 95.588 340 15 0 1 340 1 340 0.0 659
MsG0480022005.01.T01 MTR_4g080730 93.824 340 21 0 1 340 1 340 0.0 651
MsG0480022005.01.T01 MTR_5g022560 65.373 335 109 6 11 340 12 344 1.91e-157 445
MsG0480022005.01.T01 MTR_4g107930 62.899 345 123 4 1 340 1 345 1.34e-156 442
MsG0480022005.01.T01 MTR_4g079770 65.774 336 106 8 11 340 13 345 2.33e-155 439
MsG0480022005.01.T01 MTR_4g047610 66.044 321 102 6 25 340 25 343 2.18e-154 437
MsG0480022005.01.T01 MTR_2g075830 62.974 343 122 5 1 340 1 341 1.05e-152 432
MsG0480022005.01.T01 MTR_4g079470 66.460 322 100 7 25 340 26 345 1.09e-152 432
MsG0480022005.01.T01 MTR_4g079800 65.421 321 105 6 25 340 26 345 1.65e-151 430
MsG0480022005.01.T01 MTR_4g080360 60.058 343 129 5 4 340 2 342 7.62e-150 425
MsG0480022005.01.T01 MTR_2g083930 58.892 343 124 6 6 338 7 342 3.45e-136 391
MsG0480022005.01.T01 MTR_3g075390 54.006 337 144 7 10 338 10 343 6.56e-127 368
MsG0480022005.01.T01 MTR_4g104370 55.655 336 137 8 11 338 11 342 2.70e-125 363
MsG0480022005.01.T01 MTR_7g078600 58.442 308 120 5 33 338 35 336 2.25e-124 361
MsG0480022005.01.T01 MTR_7g079230 57.097 310 126 5 32 339 31 335 9.99e-122 354
MsG0480022005.01.T01 MTR_3g116080 53.274 336 147 6 11 339 15 347 3.88e-119 348
MsG0480022005.01.T01 MTR_1g107550 55.161 310 131 4 36 338 46 354 3.32e-118 350
MsG0480022005.01.T01 MTR_4g079440 49.405 336 158 4 13 338 10 343 4.63e-117 342
MsG0480022005.01.T01 MTR_3g102220 55.484 310 125 7 40 338 53 360 2.09e-114 340
MsG0480022005.01.T01 MTR_2g090890 48.640 331 166 3 10 339 9 336 1.58e-113 333
MsG0480022005.01.T01 MTR_4g094918 48.955 335 160 6 14 339 9 341 6.73e-113 332
MsG0480022005.01.T01 MTR_1g018840 52.597 308 135 6 40 338 55 360 7.49e-111 330
MsG0480022005.01.T01 MTR_1g018840 52.597 308 135 6 40 338 55 360 1.22e-110 330
MsG0480022005.01.T01 MTR_3g112430 49.673 306 146 3 41 339 37 341 5.85e-101 305
MsG0480022005.01.T01 MTR_2g016180 44.379 338 171 8 16 339 21 355 2.62e-87 271
MsG0480022005.01.T01 MTR_2g016270 44.643 336 158 9 16 339 21 340 1.39e-84 263
MsG0480022005.01.T01 MTR_2g015850 48.276 290 138 7 56 338 78 362 4.69e-84 259
MsG0480022005.01.T01 MTR_2g067900 44.892 323 158 7 30 337 6 323 6.35e-80 247
MsG0480022005.01.T01 MTR_2g064475 41.111 360 157 12 26 339 1 351 1.62e-76 239
MsG0480022005.01.T01 MTR_2g015920 40.373 322 175 9 23 331 33 350 4.60e-72 228
MsG0480022005.01.T01 MTR_4g065077 36.813 364 197 11 1 339 1 356 1.33e-71 227
MsG0480022005.01.T01 MTR_7g078630 47.601 271 104 5 36 295 702 945 5.26e-70 235
MsG0480022005.01.T01 MTR_2g067560 42.900 331 158 11 26 333 1 323 9.52e-70 234
MsG0480022005.01.T01 MTR_4g125300 39.799 299 168 7 46 339 57 348 1.09e-68 219
MsG0480022005.01.T01 MTR_2g066980 37.640 356 160 11 7 339 2 318 2.46e-68 217
MsG0480022005.01.T01 MTR_2g015930 38.728 346 180 14 10 331 13 350 2.16e-67 216
MsG0480022005.01.T01 MTR_8g086470 34.986 363 189 11 1 339 17 356 5.21e-64 207
MsG0480022005.01.T01 MTR_4g071060 35.429 350 190 9 11 331 6 348 1.54e-61 201
MsG0480022005.01.T01 MTR_1g023210 34.831 356 193 12 8 331 4 352 5.55e-60 197
MsG0480022005.01.T01 MTR_1g023810 43.478 253 122 8 89 337 26 261 4.21e-58 189
MsG0480022005.01.T01 MTR_1g094135 35.220 318 171 10 37 331 53 358 3.21e-53 179
MsG0480022005.01.T01 MTR_4g072790 33.531 337 172 11 10 331 13 312 1.21e-44 155
MsG0480022005.01.T01 MTR_4g072340 32.743 339 176 9 10 331 13 316 5.44e-43 151
MsG0480022005.01.T01 MTR_4g073660 31.642 335 185 8 10 331 12 315 1.90e-42 150
MsG0480022005.01.T01 MTR_7g079130 71.111 90 25 1 250 338 7 96 3.62e-39 134
MsG0480022005.01.T01 MTR_7g078580 68.041 97 29 2 243 338 5 100 2.04e-38 133
MsG0480022005.01.T01 MTR_1g025450 36.100 241 117 6 55 292 1 207 8.00e-36 136
MsG0480022005.01.T01 MTR_2g015840 41.667 156 86 2 8 159 2 156 8.02e-34 125
MsG0480022005.01.T01 MTR_2g015840 52.252 111 51 2 230 339 162 271 8.73e-32 120
MsG0480022005.01.T01 MTR_7g078310 44.203 138 70 3 82 217 115 247 1.40e-29 114
MsG0480022005.01.T01 MTR_2g016380 47.414 116 57 2 227 339 21 135 2.95e-27 107
MsG0480022005.01.T01 MTR_7g111060 27.839 273 164 11 89 334 67 333 2.75e-21 93.6
MsG0480022005.01.T01 MTR_2g047960 53.750 80 36 1 133 212 7 85 4.02e-21 87.0
MsG0480022005.01.T01 MTR_3g029560 28.846 208 122 5 136 338 50 236 4.11e-19 85.5
MsG0480022005.01.T01 MTR_7g111050 30.357 224 128 8 130 331 110 327 4.95e-19 87.0
MsG0480022005.01.T01 MTR_7g079260 56.944 72 14 2 266 336 7 62 1.27e-18 80.5
MsG0480022005.01.T01 MTR_8g087510 35.385 130 78 4 165 292 23 148 7.75e-17 77.4
MsG0480022005.01.T01 MTR_3g082370 25.792 221 139 7 126 330 2 213 1.09e-13 70.1
MsG0480022005.01.T01 MTR_1g042480 35.106 94 58 2 10 101 6 98 4.80e-11 60.1
MsG0480022005.01.T01 MTR_1g042360 35.106 94 58 2 10 101 6 98 4.80e-11 60.1
MsG0480022005.01.T01 MTR_7g111050 28.866 194 114 7 130 301 105 296 7.06e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022005.01.T01 AT5G45890 53.216 342 145 7 11 339 6 345 3.39e-129 373
MsG0480022005.01.T01 AT5G50260 55.977 343 138 8 6 338 2 341 3.89e-128 371
MsG0480022005.01.T01 AT3G48340 52.286 350 141 8 6 338 2 342 9.30e-120 350
MsG0480022005.01.T01 AT5G43060 53.468 346 139 7 13 338 9 352 2.44e-118 350
MsG0480022005.01.T01 AT3G19390 50.716 349 157 6 2 339 1 345 3.51e-116 344
MsG0480022005.01.T01 AT2G27420 49.133 346 158 6 9 340 7 348 6.01e-115 337
MsG0480022005.01.T01 AT3G48350 51.327 339 153 7 10 339 8 343 8.38e-115 337
MsG0480022005.01.T01 AT4G35350 52.795 322 146 5 22 339 33 352 1.11e-114 337
MsG0480022005.01.T01 AT3G19400 52.787 305 139 3 40 339 44 348 4.39e-114 335
MsG0480022005.01.T01 AT1G47128 53.947 304 133 5 40 338 50 351 1.17e-113 338
MsG0480022005.01.T01 AT2G34080 47.076 342 168 6 10 340 6 345 7.91e-113 332
MsG0480022005.01.T01 AT4G36880 54.019 311 128 7 42 338 51 360 4.68e-112 331
MsG0480022005.01.T01 AT4G23520 49.263 339 160 7 9 338 13 348 1.79e-111 328
MsG0480022005.01.T01 AT1G20850 52.751 309 139 4 36 339 47 353 5.67e-111 327
MsG0480022005.01.T01 AT3G49340 48.555 346 163 7 4 340 2 341 1.85e-110 325
MsG0480022005.01.T01 AT1G29090 47.826 345 160 9 13 340 14 355 2.30e-109 323
MsG0480022005.01.T01 AT4G11310 50.164 305 142 6 41 338 50 351 1.33e-107 319
MsG0480022005.01.T01 AT1G06260 49.245 331 163 5 10 338 14 341 4.86e-107 317
MsG0480022005.01.T01 AT4G11320 49.180 305 145 5 41 338 57 358 8.15e-107 317
MsG0480022005.01.T01 AT4G11320 49.180 305 145 5 41 338 57 358 8.15e-107 317
MsG0480022005.01.T01 AT1G09850 50.163 307 147 4 36 338 28 332 2.88e-103 310
MsG0480022005.01.T01 AT1G29080 43.895 344 173 8 10 340 10 346 1.71e-102 305
MsG0480022005.01.T01 AT3G43960 49.186 307 146 6 40 338 41 345 1.62e-92 281
MsG0480022005.01.T01 AT1G29110 39.031 351 180 6 4 339 2 333 6.93e-87 265
MsG0480022005.01.T01 AT3G19400 50.633 237 112 3 40 271 44 280 1.14e-78 243
MsG0480022005.01.T01 AT4G35350 49.225 258 124 6 22 275 33 287 1.00e-76 237
MsG0480022005.01.T01 AT3G48350 47.619 273 132 6 10 274 8 277 7.68e-76 235
MsG0480022005.01.T01 AT5G60360 39.748 317 165 9 37 339 52 356 7.33e-71 224
MsG0480022005.01.T01 AT5G60360 39.432 317 165 10 37 339 52 355 2.74e-68 218
MsG0480022005.01.T01 AT3G45310 38.462 312 176 8 37 339 52 356 1.75e-67 216
MsG0480022005.01.T01 AT5G60360 39.286 308 161 9 37 330 52 347 5.34e-67 215
MsG0480022005.01.T01 AT3G45310 38.141 312 176 9 37 339 52 355 8.46e-65 209
MsG0480022005.01.T01 AT2G21430 34.870 347 191 11 10 331 13 349 3.26e-62 202
MsG0480022005.01.T01 AT4G39090 37.987 308 153 10 48 331 59 352 7.92e-60 196
MsG0480022005.01.T01 AT3G54940 33.696 368 193 12 1 331 1 354 7.29e-55 184
MsG0480022005.01.T01 AT4G16190 34.754 305 167 9 49 331 64 358 7.50e-51 173
MsG0480022005.01.T01 AT3G54940 33.096 281 158 8 1 256 1 276 2.52e-39 140
MsG0480022005.01.T01 AT1G02305 28.470 281 171 10 69 321 49 327 1.83e-23 99.8
MsG0480022005.01.T01 AT4G01610 27.148 291 178 11 69 331 46 330 1.44e-21 94.4
MsG0480022005.01.T01 AT4G01610 26.460 291 180 11 69 331 46 330 1.41e-19 89.0
MsG0480022005.01.T01 AT1G02300 28.713 202 118 7 143 321 146 344 1.30e-16 80.5
MsG0480022005.01.T01 AT2G22160 42.222 90 49 2 56 143 10 98 2.32e-14 68.9

Find 74 sgRNAs with CRISPR-Local

Find 102 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGACTCTTGAAGAATTTA+AGG 0.095428 4:-66985726 MsG0480022005.01.T01:CDS
CTTCCATCAGCTGCTTTATA+AGG 0.204020 4:+66984878 None:intergenic
CTAGTTTGCCTGTTGTTATT+TGG 0.228382 4:+66985032 None:intergenic
ATCCTCCAATCTACAGCTTC+TGG 0.231368 4:+66985626 None:intergenic
TTCCTCCTCCTTGCACTTGC+TGG 0.233030 4:-66985959 MsG0480022005.01.T01:CDS
GTGCTAATGGTACTGATTAT+TGG 0.243422 4:-66984637 MsG0480022005.01.T01:CDS
CATTGACCTTGATCCTTGAT+TGG 0.294386 4:+66985587 None:intergenic
GCATCAATAGCAACGGATAT+TGG 0.324041 4:+66984755 None:intergenic
CATCTTCTTGTAAGCATTAC+GGG 0.335625 4:+66985700 None:intergenic
GCTGTAGATTGGAGGATAAA+AGG 0.355153 4:-66985620 MsG0480022005.01.T01:CDS
AGTGATATCTCGCTATTAAC+TGG 0.363300 4:+66984800 None:intergenic
ACTCCTGTGGCTAAGATTAC+AGG 0.367612 4:-66984836 MsG0480022005.01.T01:CDS
TACTCTAGTGGAATTTATAC+AGG 0.372553 4:-66984710 MsG0480022005.01.T01:CDS
GGTGTTACTGCTGTTGGTTA+TGG 0.376619 4:-66984662 MsG0480022005.01.T01:CDS
TGATTAACACTTAGCTTGTA+AGG 0.378815 4:+66985758 None:intergenic
ATTGACCTTGATCCTTGATT+GGG 0.383165 4:+66985588 None:intergenic
ATTGGATTGTGAAGAATTCA+TGG 0.385037 4:-66984619 MsG0480022005.01.T01:CDS
ACATCTTCTTGTAAGCATTA+CGG 0.405958 4:+66985699 None:intergenic
TTCCATCAGCTGCTTTATAA+GGG 0.407574 4:+66984879 None:intergenic
AGGATGTGAAGGAGGACTAA+TGG 0.423869 4:-66984957 MsG0480022005.01.T01:CDS
GGCACCGTGTGGGGTGAGAA+AGG 0.436038 4:-66984596 MsG0480022005.01.T01:CDS
CTATTCCAGAAGCTGTAGAT+TGG 0.451892 4:-66985631 MsG0480022005.01.T01:CDS
ATAAAACAAAAGGGAGCTGC+TGG 0.452959 4:-66985090 MsG0480022005.01.T01:intron
GTTGGTTATGGTAGTGCTAA+TGG 0.454494 4:-66984650 MsG0480022005.01.T01:CDS
GATCATGGTGTTACTGCTGT+TGG 0.455069 4:-66984668 MsG0480022005.01.T01:CDS
TTCAACAGTGGCTGCAACTG+AGG 0.464305 4:-66985062 MsG0480022005.01.T01:CDS
GGGGTGAGAAAGGGTACATA+AGG 0.472010 4:-66984586 MsG0480022005.01.T01:CDS
AGGTTAAGCAGTTGGATAAG+AGG 0.480997 4:+66984511 None:intergenic
GCACCGTGTGGGGTGAGAAA+GGG 0.483877 4:-66984595 MsG0480022005.01.T01:CDS
GGTATCAACCAAATAACAAC+AGG 0.498716 4:-66985040 MsG0480022005.01.T01:CDS
AATTGGACAGGTTAAGCAGT+TGG 0.511155 4:+66984503 None:intergenic
CTAGTTGATTGTGACACAAA+AGG 0.513450 4:-66984989 MsG0480022005.01.T01:CDS
AGGAGCTGTCACCCCAATCA+AGG 0.520534 4:-66985600 MsG0480022005.01.T01:CDS
GCAAAGAGGTATAGCTGCTA+AGG 0.525961 4:-66984561 MsG0480022005.01.T01:CDS
AACTAGTTCTTGTTCTGAGA+GGG 0.531059 4:+66985006 None:intergenic
GAAGGAGGACTAATGGAAGA+TGG 0.537127 4:-66984950 MsG0480022005.01.T01:CDS
TACCCTTATAAAGCAGCTGA+TGG 0.537865 4:-66984881 MsG0480022005.01.T01:CDS
TACCAGCAAGTGCAAGGAGG+AGG 0.540483 4:+66985957 None:intergenic
TTGGATTGTGAAGAATTCAT+GGG 0.541633 4:-66984618 MsG0480022005.01.T01:CDS
TTCCAGAAGCTGTAGATTGG+AGG 0.544215 4:-66985628 MsG0480022005.01.T01:CDS
TCGTGTCTTTCTTGTAAAGA+CGG 0.545681 4:+66985899 None:intergenic
GTCACCCCAATCAAGGATCA+AGG 0.546496 4:-66985593 MsG0480022005.01.T01:CDS
GAATTCATGGGGCACCGTGT+GGG 0.548708 4:-66984606 MsG0480022005.01.T01:CDS
GGTGAAGATCAAGGATGTGA+AGG 0.565154 4:-66984968 MsG0480022005.01.T01:CDS
GACACAAAAGGTGAAGATCA+AGG 0.569459 4:-66984977 MsG0480022005.01.T01:CDS
TCAACAGTGGCTGCAACTGA+GGG 0.573583 4:-66985061 MsG0480022005.01.T01:CDS
AATTCATGGGGCACCGTGTG+GGG 0.574870 4:-66984605 MsG0480022005.01.T01:CDS
TATCCTGTAATCTTAGCCAC+AGG 0.581099 4:+66984833 None:intergenic
TGGTAATACCAGCAAGTGCA+AGG 0.586532 4:+66985951 None:intergenic
GTACGAAGATGCTATTGAGA+AGG 0.597017 4:-66985849 MsG0480022005.01.T01:CDS
AGGCTTGTGTGGTATTGCCA+TGG 0.602466 4:-66984537 MsG0480022005.01.T01:CDS
GGAATTTATACAGGAGAGTG+TGG 0.605119 4:-66984701 MsG0480022005.01.T01:CDS
AGAATTCATGGGGCACCGTG+TGG 0.606030 4:-66984607 MsG0480022005.01.T01:CDS
GTCACTAGCATCAATAGCAA+CGG 0.611770 4:+66984748 None:intergenic
CAACTAGTTCTTGTTCTGAG+AGG 0.612685 4:+66985005 None:intergenic
TACAAGAAAGACACGAGCAA+TGG 0.615650 4:-66985892 MsG0480022005.01.T01:CDS
AGTTGGATAAGAGGAATCCA+TGG 0.616687 4:+66984520 None:intergenic
CACTGCAACAACCACTCCTG+TGG 0.617333 4:-66984849 MsG0480022005.01.T01:CDS
GAGCAATGGATGGCAGAACA+TGG 0.621675 4:-66985878 MsG0480022005.01.T01:CDS
AGAGGTATAGCTGCTAAGGA+AGG 0.623674 4:-66984557 MsG0480022005.01.T01:CDS
GCTGCTAAGGAAGGCTTGTG+TGG 0.624353 4:-66984548 MsG0480022005.01.T01:CDS
GAAGATCAAGGATGTGAAGG+AGG 0.626945 4:-66984965 MsG0480022005.01.T01:CDS
AGAAAGACACGAGCAATGGA+TGG 0.627864 4:-66985888 MsG0480022005.01.T01:CDS
TTGACCTTGATCCTTGATTG+GGG 0.629476 4:+66985589 None:intergenic
TAAAACAAAAGGGAGCTGCT+GGG 0.630725 4:-66985089 MsG0480022005.01.T01:intron
GTACCCTTTCTCACCCCACA+CGG 0.633284 4:+66984592 None:intergenic
TGGATTGTGAAGAATTCATG+GGG 0.646576 4:-66984617 MsG0480022005.01.T01:CDS
TGTGGAACTGAGCTAGATCA+TGG 0.649169 4:-66984683 MsG0480022005.01.T01:CDS
CTTCAAGAGTCAAATCAGCA+AGG 0.649995 4:+66985735 None:intergenic
GATATCACTTCTCAAAGCTG+TGG 0.652006 4:-66984786 MsG0480022005.01.T01:CDS
TGTAATCTTAGCCACAGGAG+TGG 0.669574 4:+66984838 None:intergenic
ATCAAGGATCAAGGTCAATG+TGG 0.689079 4:-66985584 MsG0480022005.01.T01:intron
GGGTACATAAGGATGCAAAG+AGG 0.705777 4:-66984575 MsG0480022005.01.T01:CDS
TAATACCAGCAAGTGCAAGG+AGG 0.756093 4:+66985954 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTGAATTTATCATTAAAAA+TGG - Chr4:66985586-66985605 MsG0480022005.01.T01:CDS 10.0%
!! AACTTCATATTATAATTTAG+TGG + Chr4:66985162-66985181 None:intergenic 15.0%
!! ATAATAAGAAGAACAATGTA+TGG + Chr4:66985334-66985353 None:intergenic 20.0%
!! GAATTTATCATTAAAAATGG+TGG - Chr4:66985589-66985608 MsG0480022005.01.T01:CDS 20.0%
!! GTCTTGAAAATAAAACAAAA+GGG - Chr4:66985413-66985432 MsG0480022005.01.T01:intron 20.0%
!! TAGCAAAAAACAATACATAT+TGG - Chr4:66984525-66984544 MsG0480022005.01.T01:CDS 20.0%
!! TGTCTTGAAAATAAAACAAA+AGG - Chr4:66985412-66985431 MsG0480022005.01.T01:intron 20.0%
!!! AGGTAAATAAAAAGTTGTTT+TGG - Chr4:66985069-66985088 MsG0480022005.01.T01:CDS 20.0%
! ACAATGTATGGCATATAATA+AGG + Chr4:66985322-66985341 None:intergenic 25.0%
! CAATGTATGGCATATAATAA+GGG + Chr4:66985321-66985340 None:intergenic 25.0%
! TTTGACTCTTGAAGAATTTA+AGG - Chr4:66984786-66984805 MsG0480022005.01.T01:CDS 25.0%
!!! ACAACTTTTTATTTACCTCT+TGG + Chr4:66985067-66985086 None:intergenic 25.0%
!!! TAATTTTAAGTTAAGCCAAG+AGG - Chr4:66985049-66985068 MsG0480022005.01.T01:CDS 25.0%
!!! TATGTATTGTTTTTTGCTAG+TGG + Chr4:66984524-66984543 None:intergenic 25.0%
!!! TTTTTTTGACTGAGTCTAAT+TGG - Chr4:66985361-66985380 MsG0480022005.01.T01:intron 25.0%
ACATCTTCTTGTAAGCATTA+CGG + Chr4:66984816-66984835 None:intergenic 30.0%
ATTGGATTGTGAAGAATTCA+TGG - Chr4:66985893-66985912 MsG0480022005.01.T01:CDS 30.0%
TACTCTAGTGGAATTTATAC+AGG - Chr4:66985802-66985821 MsG0480022005.01.T01:CDS 30.0%
TGATAAATGACCCTCAATTA+CGG + Chr4:66985128-66985147 None:intergenic 30.0%
TTGGATTGTGAAGAATTCAT+GGG - Chr4:66985894-66985913 MsG0480022005.01.T01:CDS 30.0%
! AGTTTCATGTTTTACTCTAG+TGG - Chr4:66985790-66985809 MsG0480022005.01.T01:CDS 30.0%
!! TGATTAACACTTAGCTTGTA+AGG + Chr4:66984757-66984776 None:intergenic 30.0%
!!! TAAAAAGTTGTTTTGGTCGA+AGG - Chr4:66985076-66985095 MsG0480022005.01.T01:CDS 30.0%
AGTGATATCTCGCTATTAAC+TGG + Chr4:66985715-66985734 None:intergenic 35.0%
ATTGACCTTGATCCTTGATT+GGG + Chr4:66984927-66984946 None:intergenic 35.0%
CATCTTCTTGTAAGCATTAC+GGG + Chr4:66984815-66984834 None:intergenic 35.0%
CTAGTTGATTGTGACACAAA+AGG - Chr4:66985523-66985542 MsG0480022005.01.T01:intron 35.0%
GAGTTCATTTCCTTAGAAAC+AGG + Chr4:66985026-66985045 None:intergenic 35.0%
GGTATCAACCAAATAACAAC+AGG - Chr4:66985472-66985491 MsG0480022005.01.T01:intron 35.0%
TCGTGTCTTTCTTGTAAAGA+CGG + Chr4:66984616-66984635 None:intergenic 35.0%
TGGATTGTGAAGAATTCATG+GGG - Chr4:66985895-66985914 MsG0480022005.01.T01:CDS 35.0%
! CTAGTTTGCCTGTTGTTATT+TGG + Chr4:66985483-66985502 None:intergenic 35.0%
! GTGCATAAGGTACTATTACA+AGG - Chr4:66985221-66985240 MsG0480022005.01.T01:intron 35.0%
! TTCCATCAGCTGCTTTATAA+GGG + Chr4:66985636-66985655 None:intergenic 35.0%
!! AACTAGTTCTTGTTCTGAGA+GGG + Chr4:66985509-66985528 None:intergenic 35.0%
!! GTGCTAATGGTACTGATTAT+TGG - Chr4:66985875-66985894 MsG0480022005.01.T01:CDS 35.0%
!! TCTTGATTCTCCTGTTTCTA+AGG - Chr4:66985013-66985032 MsG0480022005.01.T01:CDS 35.0%
ACCCTCAATTACGGTTGAAT+AGG + Chr4:66985119-66985138 None:intergenic 40.0%
AGTTGGATAAGAGGAATCCA+TGG + Chr4:66985995-66986014 None:intergenic 40.0%
ATAAAACAAAAGGGAGCTGC+TGG - Chr4:66985422-66985441 MsG0480022005.01.T01:intron 40.0%
ATCAAGGATCAAGGTCAATG+TGG - Chr4:66984928-66984947 MsG0480022005.01.T01:CDS 40.0%
CATTGACCTTGATCCTTGAT+TGG + Chr4:66984928-66984947 None:intergenic 40.0%
CCCTATTCAACCGTAATTGA+GGG - Chr4:66985115-66985134 MsG0480022005.01.T01:intron 40.0%
CCCTCAATTACGGTTGAATA+GGG + Chr4:66985118-66985137 None:intergenic 40.0%
CTATTCCAGAAGCTGTAGAT+TGG - Chr4:66984881-66984900 MsG0480022005.01.T01:CDS 40.0%
CTTCAAGAGTCAAATCAGCA+AGG + Chr4:66984780-66984799 None:intergenic 40.0%
GACACAAAAGGTGAAGATCA+AGG - Chr4:66985535-66985554 MsG0480022005.01.T01:intron 40.0%
GATATCACTTCTCAAAGCTG+TGG - Chr4:66985726-66985745 MsG0480022005.01.T01:CDS 40.0%
GCATCAATAGCAACGGATAT+TGG + Chr4:66985760-66985779 None:intergenic 40.0%
GCTGTAGATTGGAGGATAAA+AGG - Chr4:66984892-66984911 MsG0480022005.01.T01:CDS 40.0%
GGAATTTATACAGGAGAGTG+TGG - Chr4:66985811-66985830 MsG0480022005.01.T01:CDS 40.0%
GTACGAAGATGCTATTGAGA+AGG - Chr4:66984663-66984682 MsG0480022005.01.T01:CDS 40.0%
GTCACTAGCATCAATAGCAA+CGG + Chr4:66985767-66985786 None:intergenic 40.0%
TAAAACAAAAGGGAGCTGCT+GGG - Chr4:66985423-66985442 MsG0480022005.01.T01:intron 40.0%
TACAAGAAAGACACGAGCAA+TGG - Chr4:66984620-66984639 MsG0480022005.01.T01:CDS 40.0%
TACCCTTATAAAGCAGCTGA+TGG - Chr4:66985631-66985650 MsG0480022005.01.T01:CDS 40.0%
TATCCTGTAATCTTAGCCAC+AGG + Chr4:66985682-66985701 None:intergenic 40.0%
TTGACCTTGATCCTTGATTG+GGG + Chr4:66984926-66984945 None:intergenic 40.0%
! ACGGTGACTCATACAGTTTT+CGG + Chr4:66984597-66984616 None:intergenic 40.0%
! ACTATTGACTGCTGTGCATA+AGG - Chr4:66985208-66985227 MsG0480022005.01.T01:intron 40.0%
! CAACTAGTTCTTGTTCTGAG+AGG + Chr4:66985510-66985529 None:intergenic 40.0%
! CTTCCATCAGCTGCTTTATA+AGG + Chr4:66985637-66985656 None:intergenic 40.0%
! GTTGGTTATGGTAGTGCTAA+TGG - Chr4:66985862-66985881 MsG0480022005.01.T01:CDS 40.0%
ACTCCTGTGGCTAAGATTAC+AGG - Chr4:66985676-66985695 MsG0480022005.01.T01:CDS 45.0%
AGAAAGACACGAGCAATGGA+TGG - Chr4:66984624-66984643 MsG0480022005.01.T01:CDS 45.0%
AGGATGTGAAGGAGGACTAA+TGG - Chr4:66985555-66985574 MsG0480022005.01.T01:intron 45.0%
ATCCTCCAATCTACAGCTTC+TGG + Chr4:66984889-66984908 None:intergenic 45.0%
CAATTACGGTTGAATAGGGC+AGG + Chr4:66985114-66985133 None:intergenic 45.0%
GAAGATCAAGGATGTGAAGG+AGG - Chr4:66985547-66985566 MsG0480022005.01.T01:intron 45.0%
GAAGGAGGACTAATGGAAGA+TGG - Chr4:66985562-66985581 MsG0480022005.01.T01:intron 45.0%
GCCCTATTCAACCGTAATTG+AGG - Chr4:66985114-66985133 MsG0480022005.01.T01:intron 45.0%
GGGTACATAAGGATGCAAAG+AGG - Chr4:66985937-66985956 MsG0480022005.01.T01:CDS 45.0%
GGTGAAGATCAAGGATGTGA+AGG - Chr4:66985544-66985563 MsG0480022005.01.T01:intron 45.0%
TAATACCAGCAAGTGCAAGG+AGG + Chr4:66984561-66984580 None:intergenic 45.0%
TGGTAATACCAGCAAGTGCA+AGG + Chr4:66984564-66984583 None:intergenic 45.0%
TGTAATCTTAGCCACAGGAG+TGG + Chr4:66985677-66985696 None:intergenic 45.0%
TGTGGAACTGAGCTAGATCA+TGG - Chr4:66985829-66985848 MsG0480022005.01.T01:CDS 45.0%
TTCCAGAAGCTGTAGATTGG+AGG - Chr4:66984884-66984903 MsG0480022005.01.T01:CDS 45.0%
! AGAGGTATAGCTGCTAAGGA+AGG - Chr4:66985955-66985974 MsG0480022005.01.T01:CDS 45.0%
! CGGTGACTCATACAGTTTTC+GGG + Chr4:66984596-66984615 None:intergenic 45.0%
! GCAAAGAGGTATAGCTGCTA+AGG - Chr4:66985951-66985970 MsG0480022005.01.T01:CDS 45.0%
!! CAGTTTTCGGGACATGACAT+TGG + Chr4:66984584-66984603 None:intergenic 45.0%
!! GATCATGGTGTTACTGCTGT+TGG - Chr4:66985844-66985863 MsG0480022005.01.T01:CDS 45.0%
!! GGTGTTACTGCTGTTGGTTA+TGG - Chr4:66985850-66985869 MsG0480022005.01.T01:CDS 45.0%
AGGCTTGTGTGGTATTGCCA+TGG - Chr4:66985975-66985994 MsG0480022005.01.T01:CDS 50.0%
GAGCAATGGATGGCAGAACA+TGG - Chr4:66984634-66984653 MsG0480022005.01.T01:CDS 50.0%
GTCACCCCAATCAAGGATCA+AGG - Chr4:66984919-66984938 MsG0480022005.01.T01:CDS 50.0%
TCAACAGTGGCTGCAACTGA+GGG - Chr4:66985451-66985470 MsG0480022005.01.T01:intron 50.0%
TTCAACAGTGGCTGCAACTG+AGG - Chr4:66985450-66985469 MsG0480022005.01.T01:intron 50.0%
! CTGCTGGGCATTTTCAACAG+TGG - Chr4:66985438-66985457 MsG0480022005.01.T01:intron 50.0%
! GGGGTGAGAAAGGGTACATA+AGG - Chr4:66985926-66985945 MsG0480022005.01.T01:CDS 50.0%
AGGAGCTGTCACCCCAATCA+AGG - Chr4:66984912-66984931 MsG0480022005.01.T01:CDS 55.0%
CACTGCAACAACCACTCCTG+TGG - Chr4:66985663-66985682 MsG0480022005.01.T01:CDS 55.0%
GCTGCTAAGGAAGGCTTGTG+TGG - Chr4:66985964-66985983 MsG0480022005.01.T01:CDS 55.0%
GTACCCTTTCTCACCCCACA+CGG + Chr4:66985923-66985942 None:intergenic 55.0%
TACCAGCAAGTGCAAGGAGG+AGG + Chr4:66984558-66984577 None:intergenic 55.0%
TTCCTCCTCCTTGCACTTGC+TGG - Chr4:66984553-66984572 MsG0480022005.01.T01:CDS 55.0%
!! AATTCATGGGGCACCGTGTG+GGG - Chr4:66985907-66985926 MsG0480022005.01.T01:CDS 55.0%
!! AGAATTCATGGGGCACCGTG+TGG - Chr4:66985905-66985924 MsG0480022005.01.T01:CDS 55.0%
!! GAATTCATGGGGCACCGTGT+GGG - Chr4:66985906-66985925 MsG0480022005.01.T01:CDS 55.0%
GCACCGTGTGGGGTGAGAAA+GGG - Chr4:66985917-66985936 MsG0480022005.01.T01:CDS 60.0%
GGCACCGTGTGGGGTGAGAA+AGG - Chr4:66985916-66985935 MsG0480022005.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr4 gene 66984514 66986020 66984514 ID=MsG0480022005.01;Name=MsG0480022005.01
Chr4 mRNA 66984514 66986020 66984514 ID=MsG0480022005.01.T01;Parent=MsG0480022005.01;Name=MsG0480022005.01.T01;_AED=0.49;_eAED=0.50;_QI=0|0|0|1|1|1|2|0|340
Chr4 exon 66985585 66986020 66985585 ID=MsG0480022005.01.T01:exon:7450;Parent=MsG0480022005.01.T01
Chr4 exon 66984514 66985100 66984514 ID=MsG0480022005.01.T01:exon:7449;Parent=MsG0480022005.01.T01
Chr4 CDS 66985585 66986020 66985585 ID=MsG0480022005.01.T01:cds;Parent=MsG0480022005.01.T01
Chr4 CDS 66984514 66985100 66984514 ID=MsG0480022005.01.T01:cds;Parent=MsG0480022005.01.T01
Gene Sequence

>MsG0480022005.01.T01

ATGGTTTCCACTAGCAAAAAACAATACATATTGGCTCTGTTCCTCCTCCTTGCACTTGCTGGTATTACCAATGTCATGTCCCGAAAACTGTATGAGTCACCGTCTTTACAAGAAAGACACGAGCAATGGATGGCAGAACATGGCAAAGTGTACGAAGATGCTATTGAGAAGGAAAAACGTTTCATGATATTCAAAGACAATGTTGAGTTCATTGAATCATTCAATGCTGCTAACAACAAACCTTACAAGCTAAGTGTTAATCACCTTGCTGATTTGACTCTTGAAGAATTTAAGGCTTCCCGTAATGCTTACAAGAAGATGTCTCGTGAGTATACTACAACATCATTTAAGTATGAAAATGTTACTGCTATTCCAGAAGCTGTAGATTGGAGGATAAAAGGAGCTGTCACCCCAATCAAGGATCAAGGTCAATGTGGGAGCTGCTGGGCATTTTCAACAGTGGCTGCAACTGAGGGTATCAACCAAATAACAACAGGCAAACTAGTCTCCCTCTCAGAACAAGAACTAGTTGATTGTGACACAAAAGGTGAAGATCAAGGATGTGAAGGAGGACTAATGGAAGATGGATTTGAATTTATCATTAAAAATGGTGGAATTACAAGTGAGACTAATTACCCTTATAAAGCAGCTGATGGAAGTTGTAACACTGCAACAACCACTCCTGTGGCTAAGATTACAGGATATGAGAAAGTTCCAGTTAATAGCGAGATATCACTTCTCAAAGCTGTGGCTAATCAACCAATATCCGTTGCTATTGATGCTAGTGACTCGAGTTTCATGTTTTACTCTAGTGGAATTTATACAGGAGAGTGTGGAACTGAGCTAGATCATGGTGTTACTGCTGTTGGTTATGGTAGTGCTAATGGTACTGATTATTGGATTGTGAAGAATTCATGGGGCACCGTGTGGGGTGAGAAAGGGTACATAAGGATGCAAAGAGGTATAGCTGCTAAGGAAGGCTTGTGTGGTATTGCCATGGATTCCTCTTATCCAACTGCTTAA
Protein sequence

>MsG0480022005.01.T01

MVSTSKKQYILALFLLLALAGITNVMSRKLYESPSLQERHEQWMAEHGKVYEDAIEKEKRFMIFKDNVEFIESFNAANNKPYKLSVNHLADLTLEEFKASRNAYKKMSREYTTTSFKYENVTAIPEAVDWRIKGAVTPIKDQGQCGSCWAFSTVAATEGINQITTGKLVSLSEQELVDCDTKGEDQGCEGGLMEDGFEFIIKNGGITSETNYPYKAADGSCNTATTTPVAKITGYEKVPVNSEISLLKAVANQPISVAIDASDSSFMFYSSGIYTGECGTELDHGVTAVGYGSANGTDYWIVKNSWGTVWGEKGYIRMQRGIAAKEGLCGIAMDSSYPTA*