Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480022708.01.T01 | AFK47283.1 | 87.692 | 130 | 16 | 0 | 74 | 203 | 15 | 144 | 2.75E-74 | 231 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480022708.01.T01 | Q9CAK4 | 49.333 | 75 | 36 | 1 | 1 | 73 | 78 | 152 | 1.22E-16 | 81.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480022708.01.T01 | I3T441 | 87.692 | 130 | 16 | 0 | 74 | 203 | 15 | 144 | 1.31e-74 | 231 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180003864.01 | MsG0480022708.01 | 0.820398 | 7.006747e-53 | 5.538214e-50 |
| MsG0180004996.01 | MsG0480022708.01 | 0.814226 | 1.715835e-51 | 1.144695e-48 |
| MsG0280011093.01 | MsG0480022708.01 | 0.826264 | 2.984021e-54 | 2.784588e-51 |
| MsG0480020090.01 | MsG0480022708.01 | 0.804838 | 1.782154e-49 | 9.284822e-47 |
| MsG0480022708.01 | MsG0480022790.01 | 0.822268 | 2.594250e-53 | 2.160910e-50 |
| MsG0480022708.01 | MsG0580024468.01 | 0.803755 | 2.995912e-49 | 1.517848e-46 |
| MsG0480022708.01 | MsG0580024981.01 | 0.807100 | 5.961052e-50 | 3.290989e-47 |
| MsG0480022708.01 | MsG0880045042.01 | 0.825116 | 5.587257e-54 | 5.046301e-51 |
| MsG0480022708.01 | MsG0880045118.01 | 0.822904 | 1.845505e-53 | 1.565308e-50 |
| MsG0480022708.01 | MsG0880046077.01 | 0.833327 | 5.683089e-56 | 6.523693e-53 |
| MsG0380017039.01 | MsG0480022708.01 | 0.826326 | 2.884761e-54 | 2.696737e-51 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480022708.01.T01 | MTR_4g094375 | 87.692 | 130 | 16 | 0 | 74 | 203 | 264 | 393 | 2.89e-75 | 233 |
| MsG0480022708.01.T01 | MTR_4g094375 | 94.595 | 74 | 4 | 0 | 1 | 74 | 73 | 146 | 9.83e-44 | 151 |
| MsG0480022708.01.T01 | MTR_1g098700 | 54.839 | 124 | 56 | 0 | 74 | 197 | 277 | 400 | 3.77e-41 | 145 |
| MsG0480022708.01.T01 | MTR_1g098700 | 61.972 | 71 | 27 | 0 | 3 | 73 | 71 | 141 | 3.25e-23 | 96.7 |
| MsG0480022708.01.T01 | MTR_6g037000 | 48.387 | 124 | 64 | 0 | 70 | 193 | 250 | 373 | 1.53e-35 | 129 |
| MsG0480022708.01.T01 | MTR_6g037000 | 60.274 | 73 | 29 | 0 | 1 | 73 | 60 | 132 | 1.65e-25 | 102 |
| MsG0480022708.01.T01 | MTR_6g037070 | 50.413 | 121 | 59 | 1 | 74 | 193 | 7 | 127 | 1.14e-32 | 115 |
| MsG0480022708.01.T01 | MTR_6g036920 | 48.438 | 128 | 66 | 0 | 70 | 197 | 250 | 377 | 1.17e-31 | 119 |
| MsG0480022708.01.T01 | MTR_6g036920 | 60.274 | 73 | 29 | 0 | 1 | 73 | 60 | 132 | 2.04e-25 | 102 |
| MsG0480022708.01.T01 | MTR_6g037010 | 38.889 | 144 | 88 | 0 | 70 | 213 | 192 | 335 | 1.94e-30 | 115 |
| MsG0480022708.01.T01 | MTR_6g037010 | 57.534 | 73 | 31 | 0 | 1 | 73 | 38 | 110 | 4.84e-24 | 98.2 |
| MsG0480022708.01.T01 | MTR_6g036980 | 60.274 | 73 | 29 | 0 | 1 | 73 | 38 | 110 | 2.02e-27 | 102 |
| MsG0480022708.01.T01 | MTR_6g037060 | 57.534 | 73 | 31 | 0 | 1 | 73 | 60 | 132 | 6.71e-25 | 97.8 |
| MsG0480022708.01.T01 | MTR_8g098895 | 39.831 | 118 | 70 | 1 | 70 | 186 | 254 | 371 | 1.89e-17 | 80.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480022708.01.T01 | AT1G74450 | 54.167 | 120 | 55 | 0 | 74 | 193 | 268 | 387 | 2.82e-36 | 132 |
| MsG0480022708.01.T01 | AT1G74450 | 59.155 | 71 | 29 | 0 | 3 | 73 | 72 | 142 | 4.46e-25 | 102 |
| MsG0480022708.01.T01 | AT1G18740 | 48.780 | 123 | 63 | 0 | 74 | 196 | 260 | 382 | 9.29e-35 | 127 |
| MsG0480022708.01.T01 | AT1G18740 | 60.563 | 71 | 28 | 0 | 3 | 73 | 73 | 143 | 3.49e-24 | 99.4 |
| MsG0480022708.01.T01 | AT1G43630 | 48.413 | 126 | 63 | 2 | 74 | 197 | 282 | 407 | 1.26e-29 | 114 |
| MsG0480022708.01.T01 | AT1G43630 | 63.380 | 71 | 26 | 0 | 3 | 73 | 99 | 169 | 6.08e-24 | 99.0 |
| MsG0480022708.01.T01 | AT1G63930 | 49.333 | 75 | 36 | 1 | 1 | 73 | 78 | 152 | 1.25e-17 | 81.3 |
| MsG0480022708.01.T01 | AT1G63930 | 32.174 | 115 | 76 | 2 | 74 | 186 | 280 | 394 | 2.23e-15 | 74.7 |
| MsG0480022708.01.T01 | AT4G11300 | 34.746 | 118 | 71 | 3 | 70 | 186 | 247 | 359 | 1.83e-14 | 72.0 |
| MsG0480022708.01.T01 | AT4G11300 | 42.466 | 73 | 42 | 0 | 1 | 73 | 67 | 139 | 6.83e-14 | 70.1 |
Find 67 sgRNAs with CRISPR-Local
Find 102 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAATTGTGAGTTGTGCTTT+AGG | 0.338068 | 4:+75720647 | MsG0480022708.01.T01:CDS |
| TCAGCAAGCCGCTTGAGTTC+CGG | 0.359891 | 4:-75721136 | None:intergenic |
| AGCTATTCCTTGTCAGGATA+GGG | 0.367717 | 4:+75721013 | MsG0480022708.01.T01:intron |
| TACTCCATGTAAATTGCTTC+GGG | 0.371358 | 4:-75721058 | None:intergenic |
| ATTACATGTTCTTCGGTCAA+TGG | 0.376136 | 4:-75721224 | None:intergenic |
| TGTTGCAGCTATTCCTTGTC+AGG | 0.377112 | 4:+75721007 | MsG0480022708.01.T01:intron |
| CAGCTATTCCTTGTCAGGAT+AGG | 0.380570 | 4:+75721012 | MsG0480022708.01.T01:intron |
| CTTTCTTCTTTGACTCGTCC+AGG | 0.391519 | 4:-75721109 | None:intergenic |
| CATGTAAATTGCTTCGGGAT+TGG | 0.393587 | 4:-75721053 | None:intergenic |
| CCGTATGTGGCAAAAGCAAC+TGG | 0.397968 | 4:+75720625 | MsG0480022708.01.T01:CDS |
| GTACTCCATGTAAATTGCTT+CGG | 0.402466 | 4:-75721059 | None:intergenic |
| ACATGTAATGGAAGTTGAAC+AGG | 0.406076 | 4:+75721238 | MsG0480022708.01.T01:CDS |
| TCTTTGACTCGTCCAGGATC+CGG | 0.408725 | 4:-75721103 | None:intergenic |
| AACTTCCATTACATGTTCTT+CGG | 0.411299 | 4:-75721231 | None:intergenic |
| GTTCGGCTATCACTATCTTT+CGG | 0.426005 | 4:-75721340 | None:intergenic |
| TCCCTCACGTGGCGCTCCAA+TGG | 0.431848 | 4:-75721311 | None:intergenic |
| TAGAGACGGGTTGGATCCAT+TGG | 0.436358 | 4:+75721295 | MsG0480022708.01.T01:CDS |
| CTTGGCACATCAAACTATAC+AGG | 0.441341 | 4:+75721379 | MsG0480022708.01.T01:CDS |
| GACAGCCACCCGCCACTTGA+CGG | 0.443396 | 4:+75721178 | MsG0480022708.01.T01:CDS |
| CAATCCCGAAGCAATTTACA+TGG | 0.448669 | 4:+75721054 | MsG0480022708.01.T01:CDS |
| GGAAGTTGAACAGGATTTGA+AGG | 0.450865 | 4:+75721247 | MsG0480022708.01.T01:CDS |
| ATCTTTATTATTCAACAGAA+TGG | 0.452561 | 4:-75720498 | None:intergenic |
| GGGAATCAAGCCCCTCAGTT+CGG | 0.484799 | 4:-75721357 | None:intergenic |
| TTCAGATGTCATACGATCCA+TGG | 0.485962 | 4:-75720537 | None:intergenic |
| CTCACTTTACGACCGGATCC+TGG | 0.488384 | 4:+75721091 | MsG0480022708.01.T01:CDS |
| ACTGAGGGGCTTGATTCCCT+TGG | 0.498467 | 4:+75721361 | MsG0480022708.01.T01:CDS |
| ATTTGTAATGCGGGTCGAGA+TGG | 0.508247 | 4:+75720590 | MsG0480022708.01.T01:CDS |
| ATTGACCGAAGAACATGTAA+TGG | 0.508630 | 4:+75721226 | MsG0480022708.01.T01:CDS |
| TTTGTAATGCGGGTCGAGAT+GGG | 0.522127 | 4:+75720591 | MsG0480022708.01.T01:CDS |
| TACCAGGTCCGTCAAGTGGC+GGG | 0.523722 | 4:-75721186 | None:intergenic |
| CACCCGCCACTTGACGGACC+TGG | 0.528971 | 4:+75721184 | MsG0480022708.01.T01:CDS |
| ACTATACAGGGCAATGAGAA+AGG | 0.529590 | 4:+75721392 | MsG0480022708.01.T01:CDS |
| GCACTAGACATTTGTAATGC+GGG | 0.531981 | 4:+75720581 | MsG0480022708.01.T01:CDS |
| TCCATTGGAGCGCCACGTGA+GGG | 0.533658 | 4:+75721310 | MsG0480022708.01.T01:CDS |
| GAACTCAAGCGGCTTGCTGA+AGG | 0.542765 | 4:+75721139 | MsG0480022708.01.T01:CDS |
| ATCTGAATTCATTGAGAGGT+CGG | 0.548398 | 4:+75720553 | MsG0480022708.01.T01:CDS |
| GCTATTCCTTGTCAGGATAG+GGG | 0.548433 | 4:+75721014 | MsG0480022708.01.T01:intron |
| CAGTTGCCTCACTTTACGAC+CGG | 0.549884 | 4:+75721084 | MsG0480022708.01.T01:CDS |
| GAAACTGAGCAGAATCTACC+AGG | 0.561373 | 4:-75721202 | None:intergenic |
| CTATCAAAGGTTCAAAATTG+CGG | 0.577568 | 4:+75721427 | MsG0480022708.01.T01:CDS |
| TACAGGGCAATGAGAAAGGT+GGG | 0.578055 | 4:+75721396 | MsG0480022708.01.T01:CDS |
| GATAGTGATAGCCGAACTGA+GGG | 0.583523 | 4:+75721346 | MsG0480022708.01.T01:CDS |
| ATTGGAGCGCCACGTGAGGG+AGG | 0.597373 | 4:+75721313 | MsG0480022708.01.T01:CDS |
| ATCCATTGGAGCGCCACGTG+AGG | 0.600405 | 4:+75721309 | MsG0480022708.01.T01:CDS |
| TCAGATGTCATACGATCCAT+GGG | 0.603285 | 4:-75720536 | None:intergenic |
| CAGGTCCGTCAAGTGGCGGG+TGG | 0.603406 | 4:-75721183 | None:intergenic |
| GGCACTAGACATTTGTAATG+CGG | 0.604362 | 4:+75720580 | MsG0480022708.01.T01:CDS |
| CTACCAGGTCCGTCAAGTGG+CGG | 0.604768 | 4:-75721187 | None:intergenic |
| CTGTATAGTTTGATGTGCCA+AGG | 0.610377 | 4:-75721378 | None:intergenic |
| AGTCAAAGAAGAAAGAGCAC+CGG | 0.610994 | 4:+75721117 | MsG0480022708.01.T01:CDS |
| ATTCATTGAGAGGTCGGTCA+AGG | 0.614129 | 4:+75720559 | MsG0480022708.01.T01:CDS |
| GAATGGCTCTGAATTCATCA+TGG | 0.614996 | 4:-75720481 | None:intergenic |
| TTCGGAACACCTCCCTCACG+TGG | 0.618299 | 4:-75721322 | None:intergenic |
| GGATTGAGACTATCCGTATG+TGG | 0.621190 | 4:+75720612 | MsG0480022708.01.T01:CDS |
| GTGGGTTGCTGATCTATCAA+AGG | 0.621687 | 4:+75721414 | MsG0480022708.01.T01:CDS |
| TGTATAGTTTGATGTGCCAA+GGG | 0.623260 | 4:-75721377 | None:intergenic |
| TCAGTTATCGAAACCTCCCA+TGG | 0.624099 | 4:+75720520 | MsG0480022708.01.T01:CDS |
| AAAGAGCACCGGAACTCAAG+CGG | 0.627839 | 4:+75721128 | MsG0480022708.01.T01:CDS |
| CAGGATCCGGTCGTAAAGTG+AGG | 0.628978 | 4:-75721090 | None:intergenic |
| AATCTACCAGGTCCGTCAAG+TGG | 0.633418 | 4:-75721190 | None:intergenic |
| AGATAGTGATAGCCGAACTG+AGG | 0.647258 | 4:+75721345 | MsG0480022708.01.T01:CDS |
| ATACAGGGCAATGAGAAAGG+TGG | 0.656537 | 4:+75721395 | MsG0480022708.01.T01:CDS |
| TTTAAACCCCTATCCTGACA+AGG | 0.658776 | 4:-75721020 | None:intergenic |
| TTGGCACATCAAACTATACA+GGG | 0.662135 | 4:+75721380 | MsG0480022708.01.T01:CDS |
| TGACATCTGAATTCATTGAG+AGG | 0.667207 | 4:+75720549 | MsG0480022708.01.T01:CDS |
| GATGTCATACGATCCATGGG+AGG | 0.675731 | 4:-75720533 | None:intergenic |
| ATAGTGATAGCCGAACTGAG+GGG | 0.803639 | 4:+75721347 | MsG0480022708.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCTTTATTATTCAACAGAA+TGG | - | Chr4:75720501-75720520 | None:intergenic | 20.0% |
| AACTTCCATTACATGTTCTT+CGG | - | Chr4:75721234-75721253 | None:intergenic | 30.0% | |
| AATGAGATTGCTGCAAATAA+AGG | + | Chr4:75720927-75720946 | MsG0480022708.01.T01:intron | 30.0% | |
| ATGAGATTGCTGCAAATAAA+GGG | + | Chr4:75720928-75720947 | MsG0480022708.01.T01:intron | 30.0% | |
| ATGATTGATGAGAAAGAATC+AGG | + | Chr4:75720743-75720762 | MsG0480022708.01.T01:intron | 30.0% | |
| CTATCAAAGGTTCAAAATTG+CGG | + | Chr4:75721427-75721446 | MsG0480022708.01.T01:CDS | 30.0% | |
| !!! | GTATTCTCTTGTTTGTTTTG+TGG | + | Chr4:75720979-75720998 | MsG0480022708.01.T01:intron | 30.0% |
| ATCTGAATTCATTGAGAGGT+CGG | + | Chr4:75720553-75720572 | MsG0480022708.01.T01:CDS | 35.0% | |
| ATTACATGTTCTTCGGTCAA+TGG | - | Chr4:75721227-75721246 | None:intergenic | 35.0% | |
| ATTGACCGAAGAACATGTAA+TGG | + | Chr4:75721226-75721245 | MsG0480022708.01.T01:CDS | 35.0% | |
| GAAATTGTGAGTTGTGCTTT+AGG | + | Chr4:75720647-75720666 | MsG0480022708.01.T01:CDS | 35.0% | |
| GTACTCCATGTAAATTGCTT+CGG | - | Chr4:75721062-75721081 | None:intergenic | 35.0% | |
| TACTCCATGTAAATTGCTTC+GGG | - | Chr4:75721061-75721080 | None:intergenic | 35.0% | |
| TGACATCTGAATTCATTGAG+AGG | + | Chr4:75720549-75720568 | MsG0480022708.01.T01:CDS | 35.0% | |
| TGTATAGTTTGATGTGCCAA+GGG | - | Chr4:75721380-75721399 | None:intergenic | 35.0% | |
| TTGGCACATCAAACTATACA+GGG | + | Chr4:75721380-75721399 | MsG0480022708.01.T01:CDS | 35.0% | |
| ! | ACATGTAATGGAAGTTGAAC+AGG | + | Chr4:75721238-75721257 | MsG0480022708.01.T01:CDS | 35.0% |
| ACAAGGAATAGCTGCAACAA+GGG | - | Chr4:75721006-75721025 | None:intergenic | 40.0% | |
| ACAGTCCATTGCAAATAACC+TGG | + | Chr4:75720890-75720909 | MsG0480022708.01.T01:intron | 40.0% | |
| ACTATACAGGGCAATGAGAA+AGG | + | Chr4:75721392-75721411 | MsG0480022708.01.T01:CDS | 40.0% | |
| AGCTATTCCTTGTCAGGATA+GGG | + | Chr4:75721013-75721032 | MsG0480022708.01.T01:intron | 40.0% | |
| CAATCCCGAAGCAATTTACA+TGG | + | Chr4:75721054-75721073 | MsG0480022708.01.T01:CDS | 40.0% | |
| CATGTAAATTGCTTCGGGAT+TGG | - | Chr4:75721056-75721075 | None:intergenic | 40.0% | |
| CTGTATAGTTTGATGTGCCA+AGG | - | Chr4:75721381-75721400 | None:intergenic | 40.0% | |
| CTTGGCACATCAAACTATAC+AGG | + | Chr4:75721379-75721398 | MsG0480022708.01.T01:CDS | 40.0% | |
| GCACTAGACATTTGTAATGC+GGG | + | Chr4:75720581-75720600 | MsG0480022708.01.T01:CDS | 40.0% | |
| GGAAGTTGAACAGGATTTGA+AGG | + | Chr4:75721247-75721266 | MsG0480022708.01.T01:CDS | 40.0% | |
| GGCACTAGACATTTGTAATG+CGG | + | Chr4:75720580-75720599 | MsG0480022708.01.T01:CDS | 40.0% | |
| GGCATTCAAGATCACATTCA+TGG | + | Chr4:75720832-75720851 | MsG0480022708.01.T01:intron | 40.0% | |
| GTTCGGCTATCACTATCTTT+CGG | - | Chr4:75721343-75721362 | None:intergenic | 40.0% | |
| TCAGATGTCATACGATCCAT+GGG | - | Chr4:75720539-75720558 | None:intergenic | 40.0% | |
| TGGAACCAGGTTATTTGCAA+TGG | - | Chr4:75720898-75720917 | None:intergenic | 40.0% | |
| TTCAGATGTCATACGATCCA+TGG | - | Chr4:75720540-75720559 | None:intergenic | 40.0% | |
| TTTAAACCCCTATCCTGACA+AGG | - | Chr4:75721023-75721042 | None:intergenic | 40.0% | |
| ! | AGTCAAAGAAGAAAGAGCAC+CGG | + | Chr4:75721117-75721136 | MsG0480022708.01.T01:CDS | 40.0% |
| ! | CTCAGCGTCATAGATCTTTT+GGG | + | Chr4:75720775-75720794 | MsG0480022708.01.T01:intron | 40.0% |
| ! | TCTCAGCGTCATAGATCTTT+TGG | + | Chr4:75720774-75720793 | MsG0480022708.01.T01:intron | 40.0% |
| !! | CTTCAGAAGCTTTTAGAGAC+GGG | + | Chr4:75721282-75721301 | MsG0480022708.01.T01:CDS | 40.0% |
| !! | GAATGGCTCTGAATTCATCA+TGG | - | Chr4:75720484-75720503 | None:intergenic | 40.0% |
| !! | GCTTCAGAAGCTTTTAGAGA+CGG | + | Chr4:75721281-75721300 | MsG0480022708.01.T01:CDS | 40.0% |
| AATAAGCGACCATTGACCGA+AGG | + | Chr4:75720674-75720693 | MsG0480022708.01.T01:intron | 45.0% | |
| AGATAGTGATAGCCGAACTG+AGG | + | Chr4:75721345-75721364 | MsG0480022708.01.T01:CDS | 45.0% | |
| ATAAGCGACCATTGACCGAA+GGG | + | Chr4:75720675-75720694 | MsG0480022708.01.T01:intron | 45.0% | |
| ATACAGGGCAATGAGAAAGG+TGG | + | Chr4:75721395-75721414 | MsG0480022708.01.T01:CDS | 45.0% | |
| ATAGTGATAGCCGAACTGAG+GGG | + | Chr4:75721347-75721366 | MsG0480022708.01.T01:CDS | 45.0% | |
| ATTCATTGAGAGGTCGGTCA+AGG | + | Chr4:75720559-75720578 | MsG0480022708.01.T01:CDS | 45.0% | |
| ATTTGTAATGCGGGTCGAGA+TGG | + | Chr4:75720590-75720609 | MsG0480022708.01.T01:CDS | 45.0% | |
| CAGCTATTCCTTGTCAGGAT+AGG | + | Chr4:75721012-75721031 | MsG0480022708.01.T01:intron | 45.0% | |
| GAAACTGAGCAGAATCTACC+AGG | - | Chr4:75721205-75721224 | None:intergenic | 45.0% | |
| GACAAGGAATAGCTGCAACA+AGG | - | Chr4:75721007-75721026 | None:intergenic | 45.0% | |
| GATAGTGATAGCCGAACTGA+GGG | + | Chr4:75721346-75721365 | MsG0480022708.01.T01:CDS | 45.0% | |
| GCAAGGATAGTCATTCGACT+AGG | + | Chr4:75720811-75720830 | MsG0480022708.01.T01:intron | 45.0% | |
| GCTATTCCTTGTCAGGATAG+GGG | + | Chr4:75721014-75721033 | MsG0480022708.01.T01:intron | 45.0% | |
| GGATTGAGACTATCCGTATG+TGG | + | Chr4:75720612-75720631 | MsG0480022708.01.T01:CDS | 45.0% | |
| TACAGGGCAATGAGAAAGGT+GGG | + | Chr4:75721396-75721415 | MsG0480022708.01.T01:CDS | 45.0% | |
| TCAGTTATCGAAACCTCCCA+TGG | + | Chr4:75720520-75720539 | MsG0480022708.01.T01:CDS | 45.0% | |
| TGTTGCAGCTATTCCTTGTC+AGG | + | Chr4:75721007-75721026 | MsG0480022708.01.T01:intron | 45.0% | |
| TTTGTAATGCGGGTCGAGAT+GGG | + | Chr4:75720591-75720610 | MsG0480022708.01.T01:CDS | 45.0% | |
| ! | AGCGTCATAGATCTTTTGGG+AGG | + | Chr4:75720778-75720797 | MsG0480022708.01.T01:intron | 45.0% |
| ! | CACATTCATGGAGTGTCTCT+AGG | + | Chr4:75720844-75720863 | MsG0480022708.01.T01:intron | 45.0% |
| ! | CTTTCTTCTTTGACTCGTCC+AGG | - | Chr4:75721112-75721131 | None:intergenic | 45.0% |
| ! | GTGGGTTGCTGATCTATCAA+AGG | + | Chr4:75721414-75721433 | MsG0480022708.01.T01:CDS | 45.0% |
| !! | AGAAGCTTTTAGAGACGGGT+TGG | + | Chr4:75721286-75721305 | MsG0480022708.01.T01:CDS | 45.0% |
| !! | TGCAATGGACTGTAGTTGCT+TGG | - | Chr4:75720883-75720902 | None:intergenic | 45.0% |
| !!! | CCAGTTGCTTTTGCCACATA+CGG | - | Chr4:75720628-75720647 | None:intergenic | 45.0% |
| AATCTACCAGGTCCGTCAAG+TGG | - | Chr4:75721193-75721212 | None:intergenic | 50.0% | |
| CAGTTGCCTCACTTTACGAC+CGG | + | Chr4:75721084-75721103 | MsG0480022708.01.T01:CDS | 50.0% | |
| CATTGACCGAAGGGCAGTTT+AGG | + | Chr4:75720684-75720703 | MsG0480022708.01.T01:intron | 50.0% | |
| CCGTATGTGGCAAAAGCAAC+TGG | + | Chr4:75720625-75720644 | MsG0480022708.01.T01:CDS | 50.0% | |
| CTAAACTGCCCTTCGGTCAA+TGG | - | Chr4:75720686-75720705 | None:intergenic | 50.0% | |
| GATGTCATACGATCCATGGG+AGG | - | Chr4:75720536-75720555 | None:intergenic | 50.0% | |
| GCAATCTCATTTGCACGAGG+TGG | - | Chr4:75720918-75720937 | None:intergenic | 50.0% | |
| GCAGCAATCTCATTTGCACG+AGG | - | Chr4:75720921-75720940 | None:intergenic | 50.0% | |
| ! | TCTTTGACTCGTCCAGGATC+CGG | - | Chr4:75721106-75721125 | None:intergenic | 50.0% |
| !! | AAAGAGCACCGGAACTCAAG+CGG | + | Chr4:75721128-75721147 | MsG0480022708.01.T01:CDS | 50.0% |
| !! | GGCACTGATGGATTTAGCAC+TGG | + | Chr4:75720718-75720737 | MsG0480022708.01.T01:intron | 50.0% |
| !! | TAGAGACGGGTTGGATCCAT+TGG | + | Chr4:75721295-75721314 | MsG0480022708.01.T01:CDS | 50.0% |
| ACTGAGGGGCTTGATTCCCT+TGG | + | Chr4:75721361-75721380 | MsG0480022708.01.T01:CDS | 55.0% | |
| CAGGATCCGGTCGTAAAGTG+AGG | - | Chr4:75721093-75721112 | None:intergenic | 55.0% | |
| CATTTGCACGAGGTGGAACC+AGG | - | Chr4:75720911-75720930 | None:intergenic | 55.0% | |
| CTCACTTTACGACCGGATCC+TGG | + | Chr4:75721091-75721110 | MsG0480022708.01.T01:CDS | 55.0% | |
| GACCGAAGGGCAGTTTAGGA+GGG | + | Chr4:75720688-75720707 | MsG0480022708.01.T01:intron | 55.0% | |
| GCAGTTTAGGAGGGCGAGAA+AGG | + | Chr4:75720697-75720716 | MsG0480022708.01.T01:intron | 55.0% | |
| GGGAATCAAGCCCCTCAGTT+CGG | - | Chr4:75721360-75721379 | None:intergenic | 55.0% | |
| TAGTTGCTTGGCTGCAGACC+AGG | - | Chr4:75720871-75720890 | None:intergenic | 55.0% | |
| TCAGCAAGCCGCTTGAGTTC+CGG | - | Chr4:75721139-75721158 | None:intergenic | 55.0% | |
| TGACCGAAGGGCAGTTTAGG+AGG | + | Chr4:75720687-75720706 | MsG0480022708.01.T01:intron | 55.0% | |
| ! | CATGGAGTGTCTCTAGGTCC+TGG | + | Chr4:75720850-75720869 | MsG0480022708.01.T01:intron | 55.0% |
| ! | TGGGAGGCATAACTCGAGCA+AGG | + | Chr4:75720794-75720813 | MsG0480022708.01.T01:intron | 55.0% |
| !! | GAACTCAAGCGGCTTGCTGA+AGG | + | Chr4:75721139-75721158 | MsG0480022708.01.T01:CDS | 55.0% |
| CGCCCTCCTAAACTGCCCTT+CGG | - | Chr4:75720693-75720712 | None:intergenic | 60.0% | |
| CTACCAGGTCCGTCAAGTGG+CGG | - | Chr4:75721190-75721209 | None:intergenic | 60.0% | |
| TACCAGGTCCGTCAAGTGGC+GGG | - | Chr4:75721189-75721208 | None:intergenic | 60.0% | |
| TTCGGAACACCTCCCTCACG+TGG | - | Chr4:75721325-75721344 | None:intergenic | 60.0% | |
| ! | ATCCATTGGAGCGCCACGTG+AGG | + | Chr4:75721309-75721328 | MsG0480022708.01.T01:CDS | 60.0% |
| ! | TCCATTGGAGCGCCACGTGA+GGG | + | Chr4:75721310-75721329 | MsG0480022708.01.T01:CDS | 60.0% |
| !! | GAGGGCGAGAAAGGCACTGA+TGG | + | Chr4:75720706-75720725 | MsG0480022708.01.T01:intron | 60.0% |
| GACAGCCACCCGCCACTTGA+CGG | + | Chr4:75721178-75721197 | MsG0480022708.01.T01:CDS | 65.0% | |
| TCCCTCACGTGGCGCTCCAA+TGG | - | Chr4:75721314-75721333 | None:intergenic | 65.0% | |
| ! | ATTGGAGCGCCACGTGAGGG+AGG | + | Chr4:75721313-75721332 | MsG0480022708.01.T01:CDS | 65.0% |
| ! | CACCCGCCACTTGACGGACC+TGG | + | Chr4:75721184-75721203 | MsG0480022708.01.T01:CDS | 70.0% |
| ! | CAGGTCCGTCAAGTGGCGGG+TGG | - | Chr4:75721186-75721205 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr4 | gene | 75720449 | 75721478 | 75720449 | ID=MsG0480022708.01;Name=MsG0480022708.01 |
| Chr4 | mRNA | 75720449 | 75721478 | 75720449 | ID=MsG0480022708.01.T01;Parent=MsG0480022708.01;Name=MsG0480022708.01.T01;_AED=0.35;_eAED=0.39;_QI=0|0|0|1|1|0.5|2|0|227 |
| Chr4 | exon | 75720449 | 75720668 | 75720449 | ID=MsG0480022708.01.T01:exon:3239;Parent=MsG0480022708.01.T01 |
| Chr4 | exon | 75721015 | 75721478 | 75721015 | ID=MsG0480022708.01.T01:exon:3240;Parent=MsG0480022708.01.T01 |
| Chr4 | CDS | 75720449 | 75720668 | 75720449 | ID=MsG0480022708.01.T01:cds;Parent=MsG0480022708.01.T01 |
| Chr4 | CDS | 75721015 | 75721478 | 75721015 | ID=MsG0480022708.01.T01:cds;Parent=MsG0480022708.01.T01 |
| Gene Sequence |
| Protein sequence |
