AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180003864.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180003864.01.T01 MTR_1g070240 58.503 147 36 3 23 169 6 127 2.00e-48 153
MsG0180003864.01.T01 MTR_1g070240 91.525 59 5 0 23 81 6 64 2.26e-34 115
MsG0180003864.01.T01 MTR_1g070240 88.333 60 7 0 23 82 6 65 1.54e-33 114
MsG0180003864.01.T01 MTR_1g044145 36.170 141 53 4 33 169 18 125 2.77e-16 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180003864.01.T01 AT3G58170 43.243 148 53 4 23 169 5 122 9.29e-29 103

Find 46 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGAGCAACTCTGTTGTTTC+GGG 0.248402 1:-69376846 None:intergenic
GTGCATAAGTAAAGGTTCTT+TGG 0.278035 1:-69376052 None:intergenic
AAAGAGCAACTCTGTTGTTT+CGG 0.302142 1:-69376847 None:intergenic
CAATGGATGGATTGCAAGAT+AGG 0.310657 1:+69376960 MsG0180003864.01.T01:CDS
ATTTATGTAGGGCAATGATA+TGG 0.322400 1:+69378044 MsG0180003864.01.T01:intron
TATCATGCTCATCAATTTCA+TGG 0.334184 1:-69376928 None:intergenic
TCTGAAATAGAAAATAATTA+TGG 0.338136 1:-69376819 None:intergenic
AACTATGGACAAATTCAAAA+TGG 0.341736 1:+69378092 MsG0180003864.01.T01:CDS
GGGAGTCCTCTCAGGAACTA+TGG 0.404717 1:+69378077 MsG0180003864.01.T01:CDS
TTACTTATGCACAGAACAAC+AGG 0.419198 1:+69376063 MsG0180003864.01.T01:five_prime_UTR
TAACCGCATGCTGGATCATA+TGG 0.436740 1:+69377944 MsG0180003864.01.T01:CDS
TCTTCAAGGGGAGTCCTCTC+AGG 0.438524 1:+69378069 MsG0180003864.01.T01:CDS
GATCGAGTGAATCCGTGATC+TGG 0.450210 1:+69376195 MsG0180003864.01.T01:five_prime_UTR
GAGATATGATGAATTCTAGA+AGG 0.474589 1:+69376228 MsG0180003864.01.T01:exon
CAGTGAGAACATTCTTCGGC+TGG 0.475781 1:-69378504 None:intergenic
GCAATGATATGGATTCTTCA+AGG 0.476199 1:+69378055 MsG0180003864.01.T01:CDS
TTATCATTTACTATCTAACT+AGG 0.482678 1:+69378552 MsG0180003864.01.T01:CDS
CTACCAGTGAGAACATTCTT+CGG 0.486049 1:-69378508 None:intergenic
GTCTGTTTGCAACAGCTGTC+AGG 0.490064 1:+69377894 MsG0180003864.01.T01:CDS
GTTGTTCTGTGCATAAGTAA+AGG 0.505706 1:-69376060 None:intergenic
AATTATGGCGTCAAGTAGGA+AGG 0.526835 1:-69376804 None:intergenic
ATCTTTATACAGACACATAA+CGG 0.530566 1:-69378668 None:intergenic
GGATAATCATAACCGCATGC+TGG 0.533691 1:+69377935 MsG0180003864.01.T01:CDS
TTTGATGGTATTGAGGAGGG+TGG 0.537955 1:+69376869 MsG0180003864.01.T01:CDS
GATAATGAACAAGCAATGGA+TGG 0.545746 1:+69376947 MsG0180003864.01.T01:CDS
ATCATGCTCATCAATTTCAT+GGG 0.551837 1:-69376927 None:intergenic
TAAGTAAAGGTTCTTTGGAG+TGG 0.553172 1:-69376047 None:intergenic
TTGATGTTGAATCTGAAAGA+AGG 0.558532 1:+69378598 MsG0180003864.01.T01:three_prime_UTR
AGGTGATATACATGAGGAGG+TGG 0.560404 1:+69377914 MsG0180003864.01.T01:CDS
CAATGATATGGATTCTTCAA+GGG 0.571816 1:+69378056 MsG0180003864.01.T01:CDS
AATGGATGGATTGCAAGATA+GGG 0.574154 1:+69376961 MsG0180003864.01.T01:CDS
CAGCCGAAGAATGTTCTCAC+TGG 0.576953 1:+69378505 MsG0180003864.01.T01:CDS
CGAGTGAATCCGTGATCTGG+TGG 0.588577 1:+69376198 MsG0180003864.01.T01:five_prime_UTR
ATTATGGCGTCAAGTAGGAA+GGG 0.589854 1:-69376803 None:intergenic
AATCCGTGATCTGGTGGTGG+TGG 0.598793 1:+69376204 MsG0180003864.01.T01:five_prime_UTR
GCATGATAATGAACAAGCAA+TGG 0.600126 1:+69376943 MsG0180003864.01.T01:CDS
AAATAATTATGGCGTCAAGT+AGG 0.600929 1:-69376808 None:intergenic
TTATGGCGTCAAGTAGGAAG+GGG 0.604270 1:-69376802 None:intergenic
GTGAATCCGTGATCTGGTGG+TGG 0.622641 1:+69376201 MsG0180003864.01.T01:five_prime_UTR
TCACCACCACCACCAGATCA+CGG 0.632812 1:-69376207 None:intergenic
AATTTCATGGGAAGAAGCTG+AGG 0.635387 1:-69376915 None:intergenic
AATGATATGGATTCTTCAAG+GGG 0.638351 1:+69378057 MsG0180003864.01.T01:CDS
ATTTGTCCATAGTTCCTGAG+AGG 0.647858 1:-69378083 None:intergenic
GTCAGGTGATATACATGAGG+AGG 0.657694 1:+69377911 MsG0180003864.01.T01:CDS
GCTGTCAGGTGATATACATG+AGG 0.690650 1:+69377908 MsG0180003864.01.T01:CDS
ACACCATATGATCCAGCATG+CGG 0.718029 1:-69377947 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAATCAATTAATTAATCT+TGG - Chr1:69376260-69376279 None:intergenic 10.0%
!! CTGTAATTATAATATCTATT+TGG + Chr1:69377720-69377739 MsG0180003864.01.T01:intron 15.0%
!!! AATATTTAATTTTCTGTGTA+TGG + Chr1:69378454-69378473 MsG0180003864.01.T01:intron 15.0%
!!! TCTGAAATAGAAAATAATTA+TGG - Chr1:69376822-69376841 None:intergenic 15.0%
!! ATGAATAATTCTGATAAACA+TGG - Chr1:69377654-69377673 None:intergenic 20.0%
!! ATTAAATATTTGATCCTAAG+AGG - Chr1:69378444-69378463 None:intergenic 20.0%
!! CAACTTGTATTTAAATACTA+TGG + Chr1:69376762-69376781 MsG0180003864.01.T01:intron 20.0%
!! GAAACAATATCATATAAACA+AGG - Chr1:69377155-69377174 None:intergenic 20.0%
!! TCAATAAATCAACATATCAA+CGG - Chr1:69376401-69376420 None:intergenic 20.0%
!! TTATCATTTACTATCTAACT+AGG + Chr1:69378552-69378571 MsG0180003864.01.T01:CDS 20.0%
!!! AGTGTTTTATTGAATGTAAA+TGG - Chr1:69377567-69377586 None:intergenic 20.0%
!!! ATCAAAATTTTCTTACTCTT+TGG - Chr1:69376548-69376567 None:intergenic 20.0%
!!! GTTGTTATTCAATTTGATTA+TGG + Chr1:69376339-69376358 MsG0180003864.01.T01:intron 20.0%
!!! TATATGATATTGTTTCTGTT+GGG + Chr1:69377159-69377178 MsG0180003864.01.T01:intron 20.0%
!!! TTATATGATATTGTTTCTGT+TGG + Chr1:69377158-69377177 MsG0180003864.01.T01:intron 20.0%
! AACTATGGACAAATTCAAAA+TGG + Chr1:69378092-69378111 MsG0180003864.01.T01:CDS 25.0%
! AAGATCTTTAAATAGTCTAC+AGG - Chr1:69377763-69377782 None:intergenic 25.0%
! AGTTAAAGCAGAAAAAGAAA+AGG - Chr1:69378014-69378033 None:intergenic 25.0%
! ATCTTTATACAGACACATAA+CGG - Chr1:69378671-69378690 None:intergenic 25.0%
! GATAAGAAAAATCACAACAA+AGG - Chr1:69378537-69378556 None:intergenic 25.0%
! TAAATAGTCTACAGGAAAAA+GGG - Chr1:69377755-69377774 None:intergenic 25.0%
! TATCTGTTGGTATTTATGTA+GGG + Chr1:69378033-69378052 MsG0180003864.01.T01:intron 25.0%
! TTAAATAGTCTACAGGAAAA+AGG - Chr1:69377756-69377775 None:intergenic 25.0%
! TTTGCTTTCCTTTATTGTTT+GGG + Chr1:69378379-69378398 MsG0180003864.01.T01:intron 25.0%
!! TTTTGCTTTCCTTTATTGTT+TGG + Chr1:69378378-69378397 MsG0180003864.01.T01:intron 25.0%
!!! ATGTTTATATGACGGATTTA+TGG + Chr1:69378254-69378273 MsG0180003864.01.T01:intron 25.0%
!!! TCGTTTTTGGTTTATTAGAA+TGG + Chr1:69377213-69377232 MsG0180003864.01.T01:intron 25.0%
AAATAATTATGGCGTCAAGT+AGG - Chr1:69376811-69376830 None:intergenic 30.0%
AATGATATGGATTCTTCAAG+GGG + Chr1:69378057-69378076 MsG0180003864.01.T01:CDS 30.0%
ACAGATCTGAAGAAATGAAA+CGG - Chr1:69376108-69376127 None:intergenic 30.0%
ATCATGCTCATCAATTTCAT+GGG - Chr1:69376930-69376949 None:intergenic 30.0%
ATGAGCTTATTAATGATCAC+TGG + Chr1:69376514-69376533 MsG0180003864.01.T01:intron 30.0%
ATTAGGAGTTCATTAAACTC+TGG + Chr1:69377490-69377509 MsG0180003864.01.T01:intron 30.0%
ATTCTTCACATATTGCCTAT+GGG - Chr1:69378201-69378220 None:intergenic 30.0%
ATTGATGAATTGATGTTGTG+AGG + Chr1:69376416-69376435 MsG0180003864.01.T01:intron 30.0%
ATTTATGTAGGGCAATGATA+TGG + Chr1:69378044-69378063 MsG0180003864.01.T01:intron 30.0%
CAATGATATGGATTCTTCAA+GGG + Chr1:69378056-69378075 MsG0180003864.01.T01:CDS 30.0%
CACATAAGTTATCTTTGTAC+AGG - Chr1:69377058-69377077 None:intergenic 30.0%
CTATCTGTTGGTATTTATGT+AGG + Chr1:69378032-69378051 MsG0180003864.01.T01:intron 30.0%
GAAATTGTTAGAACAACAAC+TGG + Chr1:69376597-69376616 MsG0180003864.01.T01:intron 30.0%
GAGATATGATGAATTCTAGA+AGG + Chr1:69376228-69376247 MsG0180003864.01.T01:exon 30.0%
TAACAAGTGCGTAAACTAAA+TGG - Chr1:69378356-69378375 None:intergenic 30.0%
TAATCTTTCACCGAATACAA+AGG - Chr1:69376728-69376747 None:intergenic 30.0%
TATCATGCTCATCAATTTCA+TGG - Chr1:69376931-69376950 None:intergenic 30.0%
TGGAAAATCAAAAGAACAGT+AGG - Chr1:69377520-69377539 None:intergenic 30.0%
TGGAATTGTGTTAGTGAATA+GGG - Chr1:69377352-69377371 None:intergenic 30.0%
TTATTGTTAGAAAGTCTGTC+AGG + Chr1:69377433-69377452 MsG0180003864.01.T01:intron 30.0%
TTGATGTTGAATCTGAAAGA+AGG + Chr1:69378598-69378617 MsG0180003864.01.T01:three_prime_UTR 30.0%
TTTCTGCTTTAACTATCTGT+TGG + Chr1:69378020-69378039 MsG0180003864.01.T01:intron 30.0%
! ATTGTTCCAGTGTTGTTAAA+TGG + Chr1:69378125-69378144 MsG0180003864.01.T01:intron 30.0%
! TAAACTCTGCAATTTTGTGA+TGG + Chr1:69377829-69377848 MsG0180003864.01.T01:intron 30.0%
! TGTCATTTCCCAAACAATAA+AGG - Chr1:69378390-69378409 None:intergenic 30.0%
! TTGTATTCGGTGAAAGATTA+GGG + Chr1:69376728-69376747 MsG0180003864.01.T01:intron 30.0%
! TTTGTATTCGGTGAAAGATT+AGG + Chr1:69376727-69376746 MsG0180003864.01.T01:intron 30.0%
!! CAGCTAGAAACAGTTTTAAT+GGG + Chr1:69377872-69377891 MsG0180003864.01.T01:intron 30.0%
!! CGTCATTTTGTTTCAACTAT+TGG + Chr1:69377092-69377111 MsG0180003864.01.T01:intron 30.0%
!! TCAGCTAGAAACAGTTTTAA+TGG + Chr1:69377871-69377890 MsG0180003864.01.T01:intron 30.0%
AAATGGAATTGATCCTTCAG+AGG - Chr1:69378339-69378358 None:intergenic 35.0%
AACATTGCACGTTCTTTGTT+AGG - Chr1:69376649-69376668 None:intergenic 35.0%
AATGGAATTGATCCTTCAGA+GGG - Chr1:69378338-69378357 None:intergenic 35.0%
ACATTGCACGTTCTTTGTTA+GGG - Chr1:69376648-69376667 None:intergenic 35.0%
AGCTTCACTTCCTTTGTATT+CGG + Chr1:69376715-69376734 MsG0180003864.01.T01:intron 35.0%
AGTAAAGGATAACTTACTGC+AGG + Chr1:69377183-69377202 MsG0180003864.01.T01:intron 35.0%
CATTCTTCACATATTGCCTA+TGG - Chr1:69378202-69378221 None:intergenic 35.0%
CTAATAGAACCCAGGAATTT+AGG - Chr1:69377597-69377616 None:intergenic 35.0%
CTGGAATTGTGTTAGTGAAT+AGG - Chr1:69377353-69377372 None:intergenic 35.0%
GAAATGACAACACATTGATG+GGG + Chr1:69378401-69378420 MsG0180003864.01.T01:intron 35.0%
GAACTATCCAATGTTGTTGA+TGG - Chr1:69378289-69378308 None:intergenic 35.0%
GATAATGAACAAGCAATGGA+TGG + Chr1:69376947-69376966 MsG0180003864.01.T01:CDS 35.0%
GCAATGATATGGATTCTTCA+AGG + Chr1:69378055-69378074 MsG0180003864.01.T01:CDS 35.0%
GCAATGGCATGTTTATATGA+CGG + Chr1:69378246-69378265 MsG0180003864.01.T01:intron 35.0%
GGAAATGACAACACATTGAT+GGG + Chr1:69378400-69378419 MsG0180003864.01.T01:intron 35.0%
GTCATATAAACATGCCATTG+CGG - Chr1:69378247-69378266 None:intergenic 35.0%
GTGCATAAGTAAAGGTTCTT+TGG - Chr1:69376055-69376074 None:intergenic 35.0%
GTTGTTCTGTGCATAAGTAA+AGG - Chr1:69376063-69376082 None:intergenic 35.0%
TAACAAAGAACGTGCAATGT+TGG + Chr1:69376648-69376667 MsG0180003864.01.T01:intron 35.0%
TATCTTTGTACAGGATAGCT+AGG - Chr1:69377049-69377068 None:intergenic 35.0%
TATGTGAAGAATGTCTTCCA+TGG + Chr1:69378209-69378228 MsG0180003864.01.T01:intron 35.0%
TCTGAATTCTAATAGAACCC+AGG - Chr1:69377605-69377624 None:intergenic 35.0%
TGAGCTCAAAACTCTTACAA+TGG - Chr1:69377543-69377562 None:intergenic 35.0%
TTACTTATGCACAGAACAAC+AGG + Chr1:69376063-69376082 MsG0180003864.01.T01:five_prime_UTR 35.0%
TTCTTCACATATTGCCTATG+GGG - Chr1:69378200-69378219 None:intergenic 35.0%
! AAAGAGCAACTCTGTTGTTT+CGG - Chr1:69376850-69376869 None:intergenic 35.0%
! AACAGAGTTGCTCTTTTTGA+TGG + Chr1:69376854-69376873 MsG0180003864.01.T01:CDS 35.0%
! AGTTGTGTCTTTTTCCTCTT+AGG + Chr1:69378427-69378446 MsG0180003864.01.T01:intron 35.0%
! CTTCAGAGGGCATATATATA+GGG - Chr1:69378325-69378344 None:intergenic 35.0%
! GCATGATAATGAACAAGCAA+TGG + Chr1:69376943-69376962 MsG0180003864.01.T01:CDS 35.0%
! TAAGTAAAGGTTCTTTGGAG+TGG - Chr1:69376050-69376069 None:intergenic 35.0%
! TCTACAGGAAAAAGGGTTTT+AGG - Chr1:69377748-69377767 None:intergenic 35.0%
! TTTTGTGTGTTAAGTGCTCA+AGG + Chr1:69376464-69376483 MsG0180003864.01.T01:intron 35.0%
!! AAACTGTTTCTAGCTGATAC+AGG - Chr1:69377868-69377887 None:intergenic 35.0%
!! AACTGTTTCTAGCTGATACA+GGG - Chr1:69377867-69377886 None:intergenic 35.0%
!! AAGTAAAGGTTCTTTGGAGT+GGG - Chr1:69376049-69376068 None:intergenic 35.0%
!! AATGGATGGATTGCAAGATA+GGG + Chr1:69376961-69376980 MsG0180003864.01.T01:CDS 35.0%
!! CTTTTTGATGGTATTGAGGA+GGG + Chr1:69376866-69376885 MsG0180003864.01.T01:CDS 35.0%
!! GCAATGTTGGTAACAAAGTT+CGG + Chr1:69376661-69376680 MsG0180003864.01.T01:intron 35.0%
!! TCTTTTTGATGGTATTGAGG+AGG + Chr1:69376865-69376884 MsG0180003864.01.T01:CDS 35.0%
!! TGCTCTTTTTGATGGTATTG+AGG + Chr1:69376862-69376881 MsG0180003864.01.T01:CDS 35.0%
!! TGTGAGGTTTGCTTTCATTT+TGG + Chr1:69376432-69376451 MsG0180003864.01.T01:intron 35.0%
!! TTGTTTCTGTTGGGAAGTAA+AGG + Chr1:69377168-69377187 MsG0180003864.01.T01:intron 35.0%
AACACTGGTGACCCATTATT+GGG + Chr1:69377326-69377345 MsG0180003864.01.T01:intron 40.0%
AAGATGTGATGCAGACATGA+AGG - Chr1:69377631-69377650 None:intergenic 40.0%
AATTATGGCGTCAAGTAGGA+AGG - Chr1:69376807-69376826 None:intergenic 40.0%
AATTTCATGGGAAGAAGCTG+AGG - Chr1:69376918-69376937 None:intergenic 40.0%
ACTTCGCTTACCTAAATTCC+TGG + Chr1:69377584-69377603 MsG0180003864.01.T01:intron 40.0%
AGCAGAGGAAATAGAAGAGA+GGG + Chr1:69377384-69377403 MsG0180003864.01.T01:intron 40.0%
AGGAAATAGAAGAGAGGGAA+GGG + Chr1:69377389-69377408 MsG0180003864.01.T01:intron 40.0%
AGTGAATAGGGCCCAATAAT+GGG - Chr1:69377340-69377359 None:intergenic 40.0%
ATTATGGCGTCAAGTAGGAA+GGG - Chr1:69376806-69376825 None:intergenic 40.0%
ATTTGTCCATAGTTCCTGAG+AGG - Chr1:69378086-69378105 None:intergenic 40.0%
CCTATATATATGCCCTCTGA+AGG + Chr1:69378323-69378342 MsG0180003864.01.T01:intron 40.0%
CTACCAGTGAGAACATTCTT+CGG - Chr1:69378511-69378530 None:intergenic 40.0%
CTTCGCTTACCTAAATTCCT+GGG + Chr1:69377585-69377604 MsG0180003864.01.T01:intron 40.0%
GAAGGGGTAAAGTTGTAATC+TGG - Chr1:69376789-69376808 None:intergenic 40.0%
GCTCAAAACTCTTACAATGG+TGG - Chr1:69377540-69377559 None:intergenic 40.0%
GGGAAATGACAACACATTGA+TGG + Chr1:69378399-69378418 MsG0180003864.01.T01:intron 40.0%
GTGTCCTATCAGGTTCATAT+CGG - Chr1:69377298-69377317 None:intergenic 40.0%
TAGCAGAGGAAATAGAAGAG+AGG + Chr1:69377383-69377402 MsG0180003864.01.T01:intron 40.0%
TAGTGAATAGGGCCCAATAA+TGG - Chr1:69377341-69377360 None:intergenic 40.0%
TGGTCACCATTTAACAACAC+TGG - Chr1:69378134-69378153 None:intergenic 40.0%
! CCTTCAGAGGGCATATATAT+AGG - Chr1:69378326-69378345 None:intergenic 40.0%
! GTGTTGTTAAATGGTGACCA+TGG + Chr1:69378134-69378153 MsG0180003864.01.T01:intron 40.0%
! TCTGTGTATGGTGATGTTTC+AGG + Chr1:69378466-69378485 MsG0180003864.01.T01:intron 40.0%
!! AAGAGCAACTCTGTTGTTTC+GGG - Chr1:69376849-69376868 None:intergenic 40.0%
!! ACTGTTTCTAGCTGATACAG+GGG - Chr1:69377866-69377885 None:intergenic 40.0%
!! CAATGGATGGATTGCAAGAT+AGG + Chr1:69376960-69376979 MsG0180003864.01.T01:CDS 40.0%
!!! TGCAGGAATTGTGTCGTTTT+TGG + Chr1:69377200-69377219 MsG0180003864.01.T01:intron 40.0%
ACACCATATGATCCAGCATG+CGG - Chr1:69377950-69377969 None:intergenic 45.0%
AGGTGATATACATGAGGAGG+TGG + Chr1:69377914-69377933 MsG0180003864.01.T01:CDS 45.0%
AGGTTCATATCGGATGGACA+GGG - Chr1:69377288-69377307 None:intergenic 45.0%
ATGAACCTGATAGGACACCA+AGG + Chr1:69377300-69377319 MsG0180003864.01.T01:intron 45.0%
CAAGGAGGTGAATTGTGGAT+AGG + Chr1:69376482-69376501 MsG0180003864.01.T01:intron 45.0%
CCAGAAGATTGTAGTAGCAG+AGG + Chr1:69377369-69377388 MsG0180003864.01.T01:intron 45.0%
CCATCCGATATGAACCTGAT+AGG + Chr1:69377291-69377310 MsG0180003864.01.T01:intron 45.0%
CCTATCAGGTTCATATCGGA+TGG - Chr1:69377294-69377313 None:intergenic 45.0%
CCTCTGCTACTACAATCTTC+TGG - Chr1:69377372-69377391 None:intergenic 45.0%
CTTTGTACAGGATAGCTAGG+TGG - Chr1:69377046-69377065 None:intergenic 45.0%
GAACACTGGTGACCCATTAT+TGG + Chr1:69377325-69377344 MsG0180003864.01.T01:intron 45.0%
GAGGAAATAGAAGAGAGGGA+AGG + Chr1:69377388-69377407 MsG0180003864.01.T01:intron 45.0%
GCTGTCAGGTGATATACATG+AGG + Chr1:69377908-69377927 MsG0180003864.01.T01:CDS 45.0%
GGAAATAGAAGAGAGGGAAG+GGG + Chr1:69377390-69377409 MsG0180003864.01.T01:intron 45.0%
GGATAATCATAACCGCATGC+TGG + Chr1:69377935-69377954 MsG0180003864.01.T01:CDS 45.0%
GTCAGGTGATATACATGAGG+AGG + Chr1:69377911-69377930 MsG0180003864.01.T01:CDS 45.0%
TAACCGCATGCTGGATCATA+TGG + Chr1:69377944-69377963 MsG0180003864.01.T01:CDS 45.0%
TGTGTGTTAAGTGCTCAAGG+AGG + Chr1:69376467-69376486 MsG0180003864.01.T01:intron 45.0%
TTATGGCGTCAAGTAGGAAG+GGG - Chr1:69376805-69376824 None:intergenic 45.0%
TTCACATATTGCCTATGGGG+CGG - Chr1:69378197-69378216 None:intergenic 45.0%
! ATTTTTCACAACCGCCCCAT+AGG + Chr1:69378183-69378202 MsG0180003864.01.T01:intron 45.0%
! GGAGAGTTACTCTCTGGTTT+AGG + Chr1:69377454-69377473 MsG0180003864.01.T01:intron 45.0%
! TTTGATGGTATTGAGGAGGG+TGG + Chr1:69376869-69376888 MsG0180003864.01.T01:CDS 45.0%
!! CCAATGTTGTTGATGGCAGA+GGG - Chr1:69378282-69378301 None:intergenic 45.0%
!! TCCAATGTTGTTGATGGCAG+AGG - Chr1:69378283-69378302 None:intergenic 45.0%
!!! AATTAATTTTTTATTTGATT+AGG + Chr1:69376166-69376185 MsG0180003864.01.T01:intron 5.0%
ATGGCGCCACATGTCAGATT+CGG + Chr1:69378153-69378172 MsG0180003864.01.T01:intron 50.0%
CAGCCGAAGAATGTTCTCAC+TGG + Chr1:69378505-69378524 MsG0180003864.01.T01:CDS 50.0%
CAGGTTCATATCGGATGGAC+AGG - Chr1:69377289-69377308 None:intergenic 50.0%
CAGTGAGAACATTCTTCGGC+TGG - Chr1:69378507-69378526 None:intergenic 50.0%
CATGCCATTGCGGCTAATGA+CGG - Chr1:69378237-69378256 None:intergenic 50.0%
CCCTCTGCCATCAACAACAT+TGG + Chr1:69378279-69378298 MsG0180003864.01.T01:intron 50.0%
CTGTCAGGAGAGTTACTCTC+TGG + Chr1:69377448-69377467 MsG0180003864.01.T01:intron 50.0%
GATAGCTAGGTGGCAGTCTA+TGG - Chr1:69377036-69377055 None:intergenic 50.0%
GATCGAGTGAATCCGTGATC+TGG + Chr1:69376195-69376214 MsG0180003864.01.T01:five_prime_UTR 50.0%
GTCTGTTTGCAACAGCTGTC+AGG + Chr1:69377894-69377913 MsG0180003864.01.T01:CDS 50.0%
GTGCTCAAGGAGGTGAATTG+TGG + Chr1:69376477-69376496 MsG0180003864.01.T01:intron 50.0%
TGACACCCGAATCTGACATG+TGG - Chr1:69378162-69378181 None:intergenic 50.0%
! ACTCTCTGGTTTAGGAGCTC+TGG + Chr1:69377462-69377481 MsG0180003864.01.T01:intron 50.0%
! TAGGAGCTCTGGTCTGGATT+AGG + Chr1:69377473-69377492 MsG0180003864.01.T01:intron 50.0%
!! TTCGACCTTGGTGTCCTATC+AGG - Chr1:69377308-69377327 None:intergenic 50.0%
AGGAAGTGAAGCTGCTCTGC+AGG - Chr1:69376708-69376727 None:intergenic 55.0%
AGGACACCAAGGTCGAACAC+TGG + Chr1:69377311-69377330 MsG0180003864.01.T01:intron 55.0%
CGAGTGAATCCGTGATCTGG+TGG + Chr1:69376198-69376217 MsG0180003864.01.T01:five_prime_UTR 55.0%
GAATCTGACATGTGGCGCCA+TGG - Chr1:69378154-69378173 None:intergenic 55.0%
GGGAGTCCTCTCAGGAACTA+TGG + Chr1:69378077-69378096 MsG0180003864.01.T01:CDS 55.0%
GTGAATCCGTGATCTGGTGG+TGG + Chr1:69376201-69376220 MsG0180003864.01.T01:five_prime_UTR 55.0%
TCACCACCACCACCAGATCA+CGG - Chr1:69376210-69376229 None:intergenic 55.0%
TCTTCAAGGGGAGTCCTCTC+AGG + Chr1:69378069-69378088 MsG0180003864.01.T01:CDS 55.0%
TGGCGCCACATGTCAGATTC+GGG + Chr1:69378154-69378173 MsG0180003864.01.T01:intron 55.0%
! CTGGTTTAGGAGCTCTGGTC+TGG + Chr1:69377467-69377486 MsG0180003864.01.T01:intron 55.0%
!! AATCCGTGATCTGGTGGTGG+TGG + Chr1:69376204-69376223 MsG0180003864.01.T01:five_prime_UTR 55.0%
GAAGAGAGGGAAGGGGAGTG+AGG + Chr1:69377397-69377416 MsG0180003864.01.T01:intron 60.0%
GGCACCGTCATTAGCCGCAA+TGG + Chr1:69378230-69378249 MsG0180003864.01.T01:intron 60.0%
GGGTCACCAGTGTTCGACCT+TGG - Chr1:69377320-69377339 None:intergenic 60.0%
TGCTCTGCAGGCAGAGACGT+AGG - Chr1:69376696-69376715 None:intergenic 60.0%
! TGCGGCTAATGACGGTGCCA+TGG - Chr1:69378229-69378248 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr1 gene 69376049 69378720 69376049 ID=MsG0180003864.01;Name=MsG0180003864.01
Chr1 mRNA 69376049 69378720 69376049 ID=MsG0180003864.01.T01;Parent=MsG0180003864.01;Name=MsG0180003864.01.T01;_AED=0.42;_eAED=0.51;_QI=81|0.4|0.5|1|0|0|6|143|169
Chr1 exon 69376049 69376084 69376049 ID=MsG0180003864.01.T01:exon:5957;Parent=MsG0180003864.01.T01
Chr1 exon 69376188 69376249 69376188 ID=MsG0180003864.01.T01:exon:5958;Parent=MsG0180003864.01.T01
Chr1 exon 69376790 69377019 69376790 ID=MsG0180003864.01.T01:exon:5959;Parent=MsG0180003864.01.T01
Chr1 exon 69377875 69377965 69377875 ID=MsG0180003864.01.T01:exon:5960;Parent=MsG0180003864.01.T01
Chr1 exon 69378054 69378135 69378054 ID=MsG0180003864.01.T01:exon:5961;Parent=MsG0180003864.01.T01
Chr1 exon 69378488 69378720 69378488 ID=MsG0180003864.01.T01:exon:5962;Parent=MsG0180003864.01.T01
Chr1 five_prime_UTR 69376049 69376084 69376049 ID=MsG0180003864.01.T01:five_prime_utr;Parent=MsG0180003864.01.T01
Chr1 five_prime_UTR 69376188 69376232 69376188 ID=MsG0180003864.01.T01:five_prime_utr;Parent=MsG0180003864.01.T01
Chr1 CDS 69376233 69376249 69376233 ID=MsG0180003864.01.T01:cds;Parent=MsG0180003864.01.T01
Chr1 CDS 69376790 69377019 69376790 ID=MsG0180003864.01.T01:cds;Parent=MsG0180003864.01.T01
Chr1 CDS 69377875 69377965 69377875 ID=MsG0180003864.01.T01:cds;Parent=MsG0180003864.01.T01
Chr1 CDS 69378054 69378135 69378054 ID=MsG0180003864.01.T01:cds;Parent=MsG0180003864.01.T01
Chr1 CDS 69378488 69378577 69378488 ID=MsG0180003864.01.T01:cds;Parent=MsG0180003864.01.T01
Chr1 three_prime_UTR 69378578 69378720 69378578 ID=MsG0180003864.01.T01:three_prime_utr;Parent=MsG0180003864.01.T01
Gene Sequence

>MsG0180003864.01.T01

ATGATGAATTCTAGAAGATTACAACTTTACCCCTTCCTACTTGACGCCATAATTATTTTCTATTTCAGAGACACCCGAAACAACAGAGTTGCTCTTTTTGATGGTATTGAGGAGGGTGGAATCAGAGCATCATCTATGTACTCCTCAGCTTCTTCCCATGAAATTGATGAGCATGATAATGAACAAGCAATGGATGGATTGCAAGATAGGGTTAATCTGCTGAAAAGAGTATGTTTAGTAGTTTACTCTAGAAACAGTTTTAATGGGTCTGTTTGCAACAGCTGTCAGGTGATATACATGAGGAGGTGGATAATCATAACCGCATGCTGGATCATATGGGCAATGATATGGATTCTTCAAGGGGAGTCCTCTCAGGAACTATGGACAAATTCAAAATGGTATGTACTTGATTGTTCCAGTGTATTTGAGACAAAATCCAGCCGAAGAATGTTCTCACTGGTAGCATCCTTTGTTGTGATTTTTCTTATCATTTACTATCTAACTAGGTAA

Protein sequence

>MsG0180003864.01.T01

MMNSRRLQLYPFLLDAIIIFYFRDTRNNRVALFDGIEEGGIRASSMYSSASSHEIDEHDNEQAMDGLQDRVNLLKRVCLVVYSRNSFNGSVCNSCQVIYMRRWIIITACWIIWAMIWILQGESSQELWTNSKWYVLDCSSVFETKSSRRMFSLVASFVVIFLIIYYLTR*