AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880045042.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880045042.01.T01 MTR_8g058530 45.349 86 32 4 4 82 9 86 6.65e-11 60.1
MsG0880045042.01.T01 MTR_1g083400 34.722 144 63 6 4 116 40 183 8.85e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880045042.01.T01 AT4G31580 64.433 194 53 5 1 183 1 189 4.70e-54 171
MsG0880045042.01.T01 AT4G31580 64.433 194 53 5 1 183 1 189 4.70e-54 171
MsG0880045042.01.T01 AT1G23860 62.121 198 48 7 1 183 1 186 6.63e-52 165
MsG0880045042.01.T01 AT1G23860 62.121 198 48 7 1 183 1 186 6.63e-52 165
MsG0880045042.01.T01 AT2G24590 66.310 187 57 3 1 183 1 185 9.26e-51 162
MsG0880045042.01.T01 AT1G23860 58.470 183 56 4 1 183 1 163 2.87e-49 157
MsG0880045042.01.T01 AT1G23860 60.406 197 49 7 1 183 1 182 8.56e-49 157
MsG0880045042.01.T01 AT1G60650 38.889 126 64 4 2 114 12 137 3.50e-15 72.0
MsG0880045042.01.T01 AT1G60650 38.889 126 64 4 2 114 12 137 3.50e-15 72.0
MsG0880045042.01.T01 AT1G02840 54.795 73 27 2 4 70 9 81 5.03e-14 68.9
MsG0880045042.01.T01 AT1G02840 54.795 73 27 2 4 70 9 81 5.72e-14 68.6
MsG0880045042.01.T01 AT1G02840 54.795 73 27 2 4 70 9 81 5.72e-14 68.6
MsG0880045042.01.T01 AT1G02840 54.795 73 27 2 4 70 9 81 5.72e-14 68.6
MsG0880045042.01.T01 AT1G02840 54.795 73 27 2 4 70 9 81 1.55e-13 67.4
MsG0880045042.01.T01 AT2G37340 38.462 117 52 4 2 109 11 116 2.16e-12 64.3
MsG0880045042.01.T01 AT4G02430 49.315 73 31 2 4 70 9 81 5.52e-12 61.6
MsG0880045042.01.T01 AT4G02430 49.315 73 31 2 4 70 9 81 1.94e-11 61.6
MsG0880045042.01.T01 AT4G02430 49.315 73 31 2 4 70 9 81 3.33e-11 61.2

Find 81 sgRNAs with CRISPR-Local

Find 224 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGGGTTTATATTGGGAATT+TGG 0.194118 8:+53147195 MsG0880045042.01.T01:CDS
CTGCGATCATAACCATAATT+TGG 0.247382 8:-53148498 None:intergenic
CTTCCACGACGCCGATAATA+AGG 0.252904 8:-53148474 None:intergenic
TGAACAATTCTTTCACTATC+AGG 0.274600 8:+53147043 MsG0880045042.01.T01:five_prime_UTR
GGAGGAGGAGGCCGTGGTGG+TGG 0.279198 8:+53148324 MsG0880045042.01.T01:CDS
TTTGAAGCATTAGAAATTCT+AGG 0.300586 8:+53146974 MsG0880045042.01.T01:five_prime_UTR
GGTGGGCGCGGCGGACGCGG+AGG 0.364130 8:+53148342 MsG0880045042.01.T01:CDS
GGAGGCCGTGGTGGTGGGCG+CGG 0.373135 8:+53148330 MsG0880045042.01.T01:CDS
GTGGGCGCGGCGGACGCGGA+GGG 0.379777 8:+53148343 MsG0880045042.01.T01:CDS
AGAATGGCTAGGGTTTATAT+TGG 0.380730 8:+53147187 MsG0880045042.01.T01:exon
CCTTGATGCAATTCATGAAT+TGG 0.384043 8:+53148114 MsG0880045042.01.T01:CDS
AGTGGAGGAGGAGGAGGCCG+TGG 0.407053 8:+53148318 MsG0880045042.01.T01:CDS
GTGTGTATGGTGTTCTTCGC+AGG 0.411496 8:+53147257 MsG0880045042.01.T01:CDS
CGTCGTGGAAGTCCAAATTA+TGG 0.413494 8:+53148486 MsG0880045042.01.T01:CDS
GAATGGCTAGGGTTTATATT+GGG 0.418623 8:+53147188 MsG0880045042.01.T01:exon
GGTGGTGGGCGCGGCGGACG+CGG 0.419052 8:+53148339 MsG0880045042.01.T01:CDS
GGTTCACGAGGCCTAGGAAA+TGG 0.440238 8:+53148432 MsG0880045042.01.T01:CDS
GAGGAGGAGGCCGTGGTGGT+GGG 0.441460 8:+53148325 MsG0880045042.01.T01:CDS
TGGGCGCGGCGGACGCGGAG+GGG 0.443303 8:+53148344 MsG0880045042.01.T01:CDS
CAATCGTACCCGTTGGCATA+AGG 0.448563 8:-53149799 None:intergenic
GAGAATAACGGTATGGAGGA+GGG 0.452563 8:-53149765 None:intergenic
GAAGATGAATTTCGTGTGTA+TGG 0.455018 8:+53147244 MsG0880045042.01.T01:CDS
GAAGTCCTAGTCCTTATTAT+CGG 0.463894 8:+53148463 MsG0880045042.01.T01:CDS
CGAGAATAACGGTATGGAGG+AGG 0.468353 8:-53149766 None:intergenic
TGCTATGAATGTGGTGAACC+TGG 0.469840 8:+53148378 MsG0880045042.01.T01:CDS
CGCGGTGGTTCACGAGGCCT+AGG 0.470108 8:+53148426 MsG0880045042.01.T01:CDS
AATTCTAAGAGTGGAGGAGG+AGG 0.476429 8:+53148309 MsG0880045042.01.T01:CDS
CACCACATTCATAGCATTTG+AGG 0.476814 8:-53148371 None:intergenic
GTGAACCTGGACACTTTGCT+CGG 0.477269 8:+53148391 MsG0880045042.01.T01:CDS
TCTAAGAGTGGAGGAGGAGG+AGG 0.479968 8:+53148312 MsG0880045042.01.T01:CDS
TTGAAGCATTAGAAATTCTA+GGG 0.480293 8:+53146975 MsG0880045042.01.T01:five_prime_UTR
GTCCGCCGCGCCCACCACCA+CGG 0.480779 8:-53148335 None:intergenic
TTCGTCTCCTTCCATTTCCT+AGG 0.486230 8:-53148443 None:intergenic
CAAATTATGGTTATGATCGC+AGG 0.492260 8:+53148499 MsG0880045042.01.T01:CDS
GTGATTCACCTTATGCCAAC+GGG 0.499803 8:+53149791 MsG0880045042.01.T01:CDS
CACTCCCGAGCAAAGTGTCC+AGG 0.501069 8:-53148396 None:intergenic
GTGAATCACGGCGAGAATAA+CGG 0.506800 8:-53149777 None:intergenic
TCTGCTGTAGCTACGACCAC+GGG 0.515932 8:-53149740 None:intergenic
AACTCGATAAATGCATATCC+TGG 0.517321 8:-53148073 None:intergenic
GGTGTTATGCTACGTCGTCT+TGG 0.518423 8:-53149715 None:intergenic
CCAATTCATGAATTGCATCA+AGG 0.522137 8:-53148114 None:intergenic
CAATTCATGAATTGCATCAA+GGG 0.523222 8:-53148113 None:intergenic
CTCGTGAACCACCGCGTGAA+CGG 0.534891 8:-53148419 None:intergenic
ATCTGCTGTAGCTACGACCA+CGG 0.535386 8:-53149741 None:intergenic
AGCTCCCTCTCAGTGACTCG+AGG 0.536155 8:-53147220 None:intergenic
CATAATTCTAAGAGTGGAGG+AGG 0.536345 8:+53148306 MsG0880045042.01.T01:CDS
TGGGTTGCTCGCAGACCACC+AGG 0.541875 8:+53148055 MsG0880045042.01.T01:CDS
ATTTCTAATGCTTCAAACGA+TGG 0.551782 8:-53146968 None:intergenic
AGAATAACGGTATGGAGGAG+GGG 0.558348 8:-53149764 None:intergenic
GGAGGAGGAGGAGGCCGTGG+TGG 0.559481 8:+53148321 MsG0880045042.01.T01:CDS
CGACGCCGATAATAAGGACT+AGG 0.559929 8:-53148468 None:intergenic
TGAACCTGGACACTTTGCTC+GGG 0.574413 8:+53148392 MsG0880045042.01.T01:CDS
GCTCCCTCTCAGTGACTCGA+GGG 0.584016 8:-53147219 None:intergenic
CTTTCTCATAATTCTAAGAG+TGG 0.585332 8:+53148300 MsG0880045042.01.T01:CDS
TTATCGAGTTTGATGATCGG+AGG 0.585575 8:+53148086 MsG0880045042.01.T01:CDS
GATGCAATTCATGAATTGGA+TGG 0.586849 8:+53148118 MsG0880045042.01.T01:CDS
GGCCGTGGTGGTGGGCGCGG+CGG 0.594471 8:+53148333 MsG0880045042.01.T01:CDS
CATTTATCGAGTTTGATGAT+CGG 0.597144 8:+53148083 MsG0880045042.01.T01:CDS
TCACGGCGAGAATAACGGTA+TGG 0.602797 8:-53149772 None:intergenic
CGTGATTCACCTTATGCCAA+CGG 0.607663 8:+53149790 MsG0880045042.01.T01:CDS
CGTTCACGCGGTGGTTCACG+AGG 0.608918 8:+53148420 MsG0880045042.01.T01:CDS
TCTCATAATTCTAAGAGTGG+AGG 0.615126 8:+53148303 MsG0880045042.01.T01:CDS
CGGGAGTGCCGTTCACGCGG+TGG 0.617648 8:+53148411 MsG0880045042.01.T01:CDS
GCTCGGGAGTGCCGTTCACG+CGG 0.623311 8:+53148408 MsG0880045042.01.T01:CDS
CACGAGGCCTAGGAAATGGA+AGG 0.626617 8:+53148436 MsG0880045042.01.T01:CDS
AGTCCTTATTATCGGCGTCG+TGG 0.628842 8:+53148471 MsG0880045042.01.T01:CDS
TATCGAGTTTGATGATCGGA+GGG 0.636971 8:+53148087 MsG0880045042.01.T01:CDS
CGGCGAGAATAACGGTATGG+AGG 0.643032 8:-53149769 None:intergenic
ACATAATCAATCGTACCCGT+TGG 0.645553 8:-53149806 None:intergenic
TTGGAGATCTTCTCCCACGC+GGG 0.646297 8:-53149696 None:intergenic
CGTTGGCATAAGGTGAATCA+CGG 0.649133 8:-53149789 None:intergenic
TCAGGAGTTATAGCCCGCGT+GGG 0.651961 8:+53149683 MsG0880045042.01.T01:intron
ATCAGGAGTTATAGCCCGCG+TGG 0.663488 8:+53149682 MsG0880045042.01.T01:intron
GGACCCTCGAGTCACTGAGA+GGG 0.663626 8:+53147216 MsG0880045042.01.T01:CDS
TCGATAAATGCATATCCTGG+TGG 0.682066 8:-53148070 None:intergenic
GACCTCAAATGCTATGAATG+TGG 0.686030 8:+53148369 MsG0880045042.01.T01:CDS
CTTGGAGATCTTCTCCCACG+CGG 0.688043 8:-53149697 None:intergenic
TGGACCCTCGAGTCACTGAG+AGG 0.689956 8:+53147215 MsG0880045042.01.T01:CDS
CTGTAGCTACGACCACGGGG+AGG 0.702001 8:-53149736 None:intergenic
CTGCTGTAGCTACGACCACG+GGG 0.713780 8:-53149739 None:intergenic
CGTAGCATAACACCTCCCCG+TGG 0.773575 8:+53149724 MsG0880045042.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAATAAATTATGTGAAA+TGG - Chr8:53149355-53149374 None:intergenic 10.0%
!!! AAATTTTTCGTTTTTTTTTT+GGG + Chr8:53147112-53147131 MsG0880045042.01.T01:intron 10.0%
!! AATATATACAAATTATTTGG+AGG + Chr8:53147810-53147829 MsG0880045042.01.T01:intron 15.0%
!! TAAATATTAATGCAAATTAG+AGG + Chr8:53147848-53147867 MsG0880045042.01.T01:intron 15.0%
!! TGAATATATCAATAAAAGAA+TGG - Chr8:53149627-53149646 None:intergenic 15.0%
!!! AATAATTTTGTATAGGTTTT+GGG + Chr8:53147164-53147183 MsG0880045042.01.T01:intron 15.0%
!!! ATTTTTTTAAAAAAAATGCG+AGG + Chr8:53147656-53147675 MsG0880045042.01.T01:intron 15.0%
!!! CAAATTTTTCGTTTTTTTTT+TGG + Chr8:53147111-53147130 MsG0880045042.01.T01:intron 15.0%
!!! TTTTCACAATAATTTTGTAT+AGG + Chr8:53147157-53147176 MsG0880045042.01.T01:intron 15.0%
!! AATATTTAGCCTATAAATCT+AGG - Chr8:53147836-53147855 None:intergenic 20.0%
!! AATTGAAGTAAATTCAAACA+AGG + Chr8:53147526-53147545 MsG0880045042.01.T01:intron 20.0%
!! ATACCAATGTTATATAACAT+TGG + Chr8:53149112-53149131 MsG0880045042.01.T01:intron 20.0%
!! ATACCAATGTTATATAACAT+TGG - Chr8:53149131-53149112 None:intergenic 20.0%
!! ATTCAAACAAGGTATAATAA+CGG + Chr8:53147537-53147556 MsG0880045042.01.T01:intron 20.0%
!! GTGATTAACAATATTGATAT+AGG + Chr8:53147914-53147933 MsG0880045042.01.T01:intron 20.0%
!! TTTAGGAATACTTAAAATTG+TGG + Chr8:53147340-53147359 MsG0880045042.01.T01:intron 20.0%
!!! ATAATTTGTTCCATCATTAT+TGG + Chr8:53147987-53148006 MsG0880045042.01.T01:intron 20.0%
!!! CAATAATTTTGTATAGGTTT+TGG + Chr8:53147163-53147182 MsG0880045042.01.T01:intron 20.0%
!!! GATAGAAATATTTTCTGTTT+AGG + Chr8:53147323-53147342 MsG0880045042.01.T01:intron 20.0%
! ACAAATCTACCAAATTAACA+AGG - Chr8:53149288-53149307 None:intergenic 25.0%
! ACCATTAATTACGTTCTAAT+AGG + Chr8:53147759-53147778 MsG0880045042.01.T01:intron 25.0%
! ATAATGTATGAATGTCGTAT+AGG + Chr8:53148255-53148274 MsG0880045042.01.T01:intron 25.0%
! ATATTTGCATTCCTAAACAA+TGG - Chr8:53148634-53148653 None:intergenic 25.0%
! ATTGAATTTCATTCGAATAG+AGG - Chr8:53148817-53148836 None:intergenic 25.0%
! ATTGTTCTGCAAATTATGTT+GGG + Chr8:53148862-53148881 MsG0880045042.01.T01:intron 25.0%
! CCAAACTGTAACAAAATAAA+AGG - Chr8:53148603-53148622 None:intergenic 25.0%
! CCAAATTAACAAGGAATAAA+AGG - Chr8:53149279-53149298 None:intergenic 25.0%
! CGAAAAATTTGAGAAGAAAA+TGG - Chr8:53147102-53147121 None:intergenic 25.0%
! TATGCATCATATTGAGATTT+GGG + Chr8:53148226-53148245 MsG0880045042.01.T01:intron 25.0%
! TCCTATTAGAACGTAATTAA+TGG - Chr8:53147763-53147782 None:intergenic 25.0%
! TTATGCATCATATTGAGATT+TGG + Chr8:53148225-53148244 MsG0880045042.01.T01:intron 25.0%
!! AGATTTTGAACCAATAATGA+TGG - Chr8:53148000-53148019 None:intergenic 25.0%
!! ATCTTCTCATGTTTTCATTT+GGG + Chr8:53149646-53149665 MsG0880045042.01.T01:intron 25.0%
!! ATTTTATGTACTTCATAGCT+TGG + Chr8:53149066-53149085 MsG0880045042.01.T01:intron 25.0%
!! CCTTTTATTCCTTGTTAATT+TGG + Chr8:53149276-53149295 MsG0880045042.01.T01:intron 25.0%
!! GAAATTCAATATCTTTTCTG+AGG + Chr8:53148827-53148846 MsG0880045042.01.T01:intron 25.0%
!! TATTTTGTTACAGTTTGGAT+TGG + Chr8:53148605-53148624 MsG0880045042.01.T01:intron 25.0%
!! TTGAAGCATTAGAAATTCTA+GGG + Chr8:53146975-53146994 MsG0880045042.01.T01:five_prime_UTR 25.0%
!! TTTGAAGCATTAGAAATTCT+AGG + Chr8:53146974-53146993 MsG0880045042.01.T01:five_prime_UTR 25.0%
!! TTTTATGTACTTCATAGCTT+GGG + Chr8:53149067-53149086 MsG0880045042.01.T01:intron 25.0%
!!! AAATGAGAAGTGTTATAAGT+TGG - Chr8:53149050-53149069 None:intergenic 25.0%
!!! AATGAGAAGTGTTATAAGTT+GGG - Chr8:53149049-53149068 None:intergenic 25.0%
!!! CCTTTTATTTTGTTACAGTT+TGG + Chr8:53148600-53148619 MsG0880045042.01.T01:intron 25.0%
!!! GAAGTTGGTAAAATAATCAA+TGG + Chr8:53148747-53148766 MsG0880045042.01.T01:intron 25.0%
!!! TAAGATTTTTTCGTGGATAA+TGG + Chr8:53147569-53147588 MsG0880045042.01.T01:intron 25.0%
!!! TTATTTTACCAACTTCAAGA+AGG - Chr8:53148743-53148762 None:intergenic 25.0%
AAAATATCTACTGTTGAAGC+AGG - Chr8:53147610-53147629 None:intergenic 30.0%
AAATTGACAAAGCATGAACT+AGG - Chr8:53148152-53148171 None:intergenic 30.0%
AACAAGGTATAATAACGGTT+CGG + Chr8:53147542-53147561 MsG0880045042.01.T01:intron 30.0%
AATTGAAATTTCTCTCTGCT+TGG + Chr8:53149372-53149391 MsG0880045042.01.T01:intron 30.0%
ATATAACATTGGTATCCCAA+TGG + Chr8:53149233-53149252 MsG0880045042.01.T01:intron 30.0%
ATATAACATTGGTATCCCAA+TGG - Chr8:53149252-53149233 None:intergenic 30.0%
ATGCATCATATTGAGATTTG+GGG + Chr8:53148227-53148246 MsG0880045042.01.T01:intron 30.0%
ATTGAAATTTCTCTCTGCTT+GGG + Chr8:53149373-53149392 MsG0880045042.01.T01:intron 30.0%
ATTTCTAATGCTTCAAACGA+TGG - Chr8:53146971-53146990 None:intergenic 30.0%
CAATTCATGAATTGCATCAA+GGG - Chr8:53148116-53148135 None:intergenic 30.0%
CCATAAAGTAACTAAAGCAA+TGG - Chr8:53147881-53147900 None:intergenic 30.0%
GAAATTATACAGTGGAAATG+AGG - Chr8:53149559-53149578 None:intergenic 30.0%
GAATGTCGTATAGGAAAAAA+TGG + Chr8:53148264-53148283 MsG0880045042.01.T01:intron 30.0%
GATTGTTCTGCAAATTATGT+TGG + Chr8:53148861-53148880 MsG0880045042.01.T01:intron 30.0%
GATTTATGAATATCCTTTCC+AGG - Chr8:53149450-53149469 None:intergenic 30.0%
GTAATTCTCTTATGTACTCT+AGG + Chr8:53147279-53147298 MsG0880045042.01.T01:intron 30.0%
TAGGGTTTATATTGGGAATT+TGG + Chr8:53147195-53147214 MsG0880045042.01.T01:CDS 30.0%
TATATAACATTGGCCAATGA+AGG + Chr8:53149122-53149141 MsG0880045042.01.T01:intron 30.0%
TATATAACATTGGCCAATGA+AGG - Chr8:53149141-53149122 None:intergenic 30.0%
TGAACAATTCTTTCACTATC+AGG + Chr8:53147043-53147062 MsG0880045042.01.T01:five_prime_UTR 30.0%
TGCACTTAGAAATTATACAG+TGG - Chr8:53149567-53149586 None:intergenic 30.0%
TGGCCAATGTTATATAACAT+TGG + Chr8:53149222-53149241 MsG0880045042.01.T01:intron 30.0%
TGGCCAATGTTATATAACAT+TGG - Chr8:53149241-53149222 None:intergenic 30.0%
TTGTTCTGCAAATTATGTTG+GGG + Chr8:53148863-53148882 MsG0880045042.01.T01:intron 30.0%
TTTATGTACTTCATAGCTTG+GGG + Chr8:53149068-53149087 MsG0880045042.01.T01:intron 30.0%
! CATCTTCTCATGTTTTCATT+TGG + Chr8:53149645-53149664 MsG0880045042.01.T01:intron 30.0%
! CATTTATCGAGTTTGATGAT+CGG + Chr8:53148083-53148102 MsG0880045042.01.T01:CDS 30.0%
! CCATTGCTTTAGTTACTTTA+TGG + Chr8:53147878-53147897 MsG0880045042.01.T01:intron 30.0%
! CTTTCTCATAATTCTAAGAG+TGG + Chr8:53148300-53148319 MsG0880045042.01.T01:CDS 30.0%
! GCTTTAGTTACTTTATGGTA+AGG + Chr8:53147883-53147902 MsG0880045042.01.T01:intron 30.0%
!! ATGAGAAGTGTTATAAGTTG+GGG - Chr8:53149048-53149067 None:intergenic 30.0%
!! TTTTTAGCGTTGTCAAATGT+TGG + Chr8:53148907-53148926 MsG0880045042.01.T01:intron 30.0%
!!! TTTTTTGCAATACAGTGTCT+GGG + Chr8:53148036-53148055 MsG0880045042.01.T01:intron 30.0%
AACTCGATAAATGCATATCC+TGG - Chr8:53148076-53148095 None:intergenic 35.0%
AAGGAATAAAAGGCAAGCTA+TGG - Chr8:53149269-53149288 None:intergenic 35.0%
AATTCAACTTAACCACTGAG+TGG + Chr8:53149483-53149502 MsG0880045042.01.T01:intron 35.0%
ACCAACTTCAAGAAGGTTAT+GGG - Chr8:53148736-53148755 None:intergenic 35.0%
AGAATGGCTAGGGTTTATAT+TGG + Chr8:53147187-53147206 MsG0880045042.01.T01:exon 35.0%
ATAAAAGGCTAAAAGCTTGC+TGG - Chr8:53148588-53148607 None:intergenic 35.0%
ATTTGGAGGCCTAGATTTAT+AGG + Chr8:53147824-53147843 MsG0880045042.01.T01:intron 35.0%
CAAATTATGGTTATGATCGC+AGG + Chr8:53148499-53148518 MsG0880045042.01.T01:CDS 35.0%
CCAATTCATGAATTGCATCA+AGG - Chr8:53148117-53148136 None:intergenic 35.0%
CCTTGATGCAATTCATGAAT+TGG + Chr8:53148114-53148133 MsG0880045042.01.T01:CDS 35.0%
CTGCGATCATAACCATAATT+TGG - Chr8:53148501-53148520 None:intergenic 35.0%
GAAGATGAATTTCGTGTGTA+TGG + Chr8:53147244-53147263 MsG0880045042.01.T01:CDS 35.0%
GAAGTCCTAGTCCTTATTAT+CGG + Chr8:53148463-53148482 MsG0880045042.01.T01:CDS 35.0%
GAATGGCTAGGGTTTATATT+GGG + Chr8:53147188-53147207 MsG0880045042.01.T01:exon 35.0%
GATGCAATTCATGAATTGGA+TGG + Chr8:53148118-53148137 MsG0880045042.01.T01:CDS 35.0%
GGAACTGATACGATCTTTAT+AGG + Chr8:53147469-53147488 MsG0880045042.01.T01:intron 35.0%
GTAACTAAAGCAATGGCTTT+AGG - Chr8:53147874-53147893 None:intergenic 35.0%
GTGAACTCCCAAAATGAAAA+TGG + Chr8:53147682-53147701 MsG0880045042.01.T01:intron 35.0%
TACCAACTTCAAGAAGGTTA+TGG - Chr8:53148737-53148756 None:intergenic 35.0%
! TAGTTACTTTATGGTAAGGC+TGG + Chr8:53147887-53147906 MsG0880045042.01.T01:intron 35.0%
! TATGCATGTGAAGTGTTATG+TGG - Chr8:53149152-53149171 None:intergenic 35.0%
! TCTCATAATTCTAAGAGTGG+AGG + Chr8:53148303-53148322 MsG0880045042.01.T01:CDS 35.0%
!!! GAACCTGCCATTTTCATTTT+GGG - Chr8:53147692-53147711 None:intergenic 35.0%
!!! GTTTTTTGCAATACAGTGTC+TGG + Chr8:53148035-53148054 MsG0880045042.01.T01:intron 35.0%
!!! TGTATTTTTTGACAAACGCC+CGG + Chr8:53148949-53148968 MsG0880045042.01.T01:intron 35.0%
!!! TTGTATAGGTTTTGGGAGAA+TGG + Chr8:53147171-53147190 MsG0880045042.01.T01:intron 35.0%
AAAAATACACTCCCGCAATC+CGG - Chr8:53148938-53148957 None:intergenic 40.0%
ACCCATAACCTTCTTGAAGT+TGG + Chr8:53148732-53148751 MsG0880045042.01.T01:intron 40.0%
ACTCCCAAAATGAAAATGGC+AGG + Chr8:53147686-53147705 MsG0880045042.01.T01:intron 40.0%
ATGTCGGAAAGCTAGAAATC+TGG - Chr8:53149015-53149034 None:intergenic 40.0%
ATTGTCTGCATGAACAACGA+TGG + Chr8:53147448-53147467 MsG0880045042.01.T01:intron 40.0%
CACCACATTCATAGCATTTG+AGG - Chr8:53148374-53148393 None:intergenic 40.0%
CATTGCTGAGTGTATGTTGT+TGG + Chr8:53148177-53148196 MsG0880045042.01.T01:intron 40.0%
GACCTCAAATGCTATGAATG+TGG + Chr8:53148369-53148388 MsG0880045042.01.T01:CDS 40.0%
GTCGTATAGGAAAAAATGGC+TGG + Chr8:53148268-53148287 MsG0880045042.01.T01:intron 40.0%
TATGGCACTTGTGTACCATT+GGG - Chr8:53149251-53149270 None:intergenic 40.0%
TCGATAAATGCATATCCTGG+TGG - Chr8:53148073-53148092 None:intergenic 40.0%
! AAGGTATAATAACGGTTCGG+TGG + Chr8:53147545-53147564 MsG0880045042.01.T01:intron 40.0%
! CATAATTCTAAGAGTGGAGG+AGG + Chr8:53148306-53148325 MsG0880045042.01.T01:CDS 40.0%
! GAAGTGTTATAAGTTGGGGA+TGG - Chr8:53149044-53149063 None:intergenic 40.0%
! GTACTTTCACGCACTGATAT+GGG + Chr8:53148678-53148697 MsG0880045042.01.T01:intron 40.0%
! TATCGAGTTTGATGATCGGA+GGG + Chr8:53148087-53148106 MsG0880045042.01.T01:CDS 40.0%
! TGGGTTCGCTTCATTTTATC+AGG + Chr8:53149665-53149684 MsG0880045042.01.T01:intron 40.0%
! TGTACTTTCACGCACTGATA+TGG + Chr8:53148677-53148696 MsG0880045042.01.T01:intron 40.0%
! TTATCGAGTTTGATGATCGG+AGG + Chr8:53148086-53148105 MsG0880045042.01.T01:CDS 40.0%
! TTTCGTGGATAATGGTACCA+CGG + Chr8:53147577-53147596 MsG0880045042.01.T01:intron 40.0%
!! TGAAGGATGATGGCGTTTTA+TGG + Chr8:53148981-53149000 MsG0880045042.01.T01:intron 40.0%
!!! CGAACCTGCCATTTTCATTT+TGG - Chr8:53147693-53147712 None:intergenic 40.0%
!!! CGGTGGTTAAGATTTTTTCG+TGG + Chr8:53147562-53147581 MsG0880045042.01.T01:intron 40.0%
!!! GTATTTTTTGACAAACGCCC+GGG + Chr8:53148950-53148969 MsG0880045042.01.T01:intron 40.0%
!!! TATTTTTTGACAAACGCCCG+GGG + Chr8:53148951-53148970 MsG0880045042.01.T01:intron 40.0%
!!! TGTTGGGGACATCACTTTTT+CGG + Chr8:53148878-53148897 MsG0880045042.01.T01:intron 40.0%
AATATCCTTTCCAGGCTGAG+TGG - Chr8:53149442-53149461 None:intergenic 45.0%
AGAATAACGGTATGGAGGAG+GGG - Chr8:53149767-53149786 None:intergenic 45.0%
ATATCCTTTCCAGGCTGAGT+GGG - Chr8:53149441-53149460 None:intergenic 45.0%
CGTAATTAATGGTGCAGCAG+CGG - Chr8:53147752-53147771 None:intergenic 45.0%
CGTCGTGGAAGTCCAAATTA+TGG + Chr8:53148486-53148505 MsG0880045042.01.T01:CDS 45.0%
CGTGATTCACCTTATGCCAA+CGG + Chr8:53149790-53149809 MsG0880045042.01.T01:CDS 45.0%
CGTTGGCATAAGGTGAATCA+CGG - Chr8:53149792-53149811 None:intergenic 45.0%
CTATGGCACTTGTGTACCAT+TGG - Chr8:53149252-53149271 None:intergenic 45.0%
GAGAATAACGGTATGGAGGA+GGG - Chr8:53149768-53149787 None:intergenic 45.0%
GGGAAGATTGTGAAGGATGA+TGG + Chr8:53148971-53148990 MsG0880045042.01.T01:intron 45.0%
GTACTCTTTCTTCAGCCGAA+TGG - Chr8:53147725-53147744 None:intergenic 45.0%
GTATCCCAATGGTACACAAG+TGG - Chr8:53149263-53149244 None:intergenic 45.0%
GTGAATCACGGCGAGAATAA+CGG - Chr8:53149780-53149799 None:intergenic 45.0%
GTGATTCACCTTATGCCAAC+GGG + Chr8:53149791-53149810 MsG0880045042.01.T01:CDS 45.0%
GTTATGTGGCACACCTTCAT+TGG - Chr8:53149138-53149157 None:intergenic 45.0%
TCATCCTTCACAATCTTCCC+CGG - Chr8:53148971-53148990 None:intergenic 45.0%
TGCTATGAATGTGGTGAACC+TGG + Chr8:53148378-53148397 MsG0880045042.01.T01:CDS 45.0%
TTCGTCTCCTTCCATTTCCT+AGG - Chr8:53148446-53148465 None:intergenic 45.0%
TTGGGGATGGATGATCATGT+CGG - Chr8:53149031-53149050 None:intergenic 45.0%
TTGTCAAATGTTGGCCATGC+CGG + Chr8:53148916-53148935 MsG0880045042.01.T01:intron 45.0%
TTTCTTCAGCCGAATGGTCA+CGG - Chr8:53147719-53147738 None:intergenic 45.0%
! AATTCTAAGAGTGGAGGAGG+AGG + Chr8:53148309-53148328 MsG0880045042.01.T01:CDS 45.0%
! TGGATTGGACGCCATTGTTT+AGG + Chr8:53148620-53148639 MsG0880045042.01.T01:intron 45.0%
! TTCGTGGATAATGGTACCAC+GGG + Chr8:53147578-53147597 MsG0880045042.01.T01:intron 45.0%
!! AGGATGATGGCGTTTTATGG+CGG + Chr8:53148984-53149003 MsG0880045042.01.T01:intron 45.0%
!!! AGGTTTTGGGAGAATGGCTA+GGG + Chr8:53147177-53147196 MsG0880045042.01.T01:intron 45.0%
!!! TAGGTTTTGGGAGAATGGCT+AGG + Chr8:53147176-53147195 MsG0880045042.01.T01:intron 45.0%
!! AAAAATATATACAAATTATT+TGG + Chr8:53147807-53147826 MsG0880045042.01.T01:intron 5.0%
AGTCCTTATTATCGGCGTCG+TGG + Chr8:53148471-53148490 MsG0880045042.01.T01:CDS 50.0%
ATCTGCTGTAGCTACGACCA+CGG - Chr8:53149744-53149763 None:intergenic 50.0%
CAACTTAACCACTGAGTGGC+TGG + Chr8:53149487-53149506 MsG0880045042.01.T01:intron 50.0%
CAATCGTACCCGTTGGCATA+AGG - Chr8:53149802-53149821 None:intergenic 50.0%
CATCCTTCACAATCTTCCCC+GGG - Chr8:53148970-53148989 None:intergenic 50.0%
CCTGTGTGACACACCTTCAT+TGG + Chr8:53149202-53149221 MsG0880045042.01.T01:intron 50.0%
CGACGCCGATAATAAGGACT+AGG - Chr8:53148471-53148490 None:intergenic 50.0%
CGAGAATAACGGTATGGAGG+AGG - Chr8:53149769-53149788 None:intergenic 50.0%
CTTCCACGACGCCGATAATA+AGG - Chr8:53148477-53148496 None:intergenic 50.0%
GGCACCACTTGTGTACCATT+GGG + Chr8:53149089-53149108 MsG0880045042.01.T01:intron 50.0%
GTGAACCTGGACACTTTGCT+CGG + Chr8:53148391-53148410 MsG0880045042.01.T01:CDS 50.0%
GTGTGTATGGTGTTCTTCGC+AGG + Chr8:53147257-53147276 MsG0880045042.01.T01:CDS 50.0%
TCACGGCGAGAATAACGGTA+TGG - Chr8:53149775-53149794 None:intergenic 50.0%
TGAACCTGGACACTTTGCTC+GGG + Chr8:53148392-53148411 MsG0880045042.01.T01:CDS 50.0%
TTCTTCAGCCGAATGGTCAC+GGG - Chr8:53147718-53147737 None:intergenic 50.0%
TTGAAGCAGGATCAAACCCG+TGG - Chr8:53147597-53147616 None:intergenic 50.0%
! CCAATGAAGGTGTGTCACAC+AGG - Chr8:53149205-53149224 None:intergenic 50.0%
! GATCTTTTCCAGCCACTCAG+TGG - Chr8:53149498-53149517 None:intergenic 50.0%
! GGTGTTATGCTACGTCGTCT+TGG - Chr8:53149718-53149737 None:intergenic 50.0%
! TCACGCACTGATATGGGAAC+AGG + Chr8:53148684-53148703 MsG0880045042.01.T01:intron 50.0%
! TGAAGGTGTGTCACACAGGA+AGG - Chr8:53149201-53149220 None:intergenic 50.0%
ATCAGGAGTTATAGCCCGCG+TGG + Chr8:53149682-53149701 MsG0880045042.01.T01:intron 55.0%
ATGTTGGCCATGCCGGATTG+CGG + Chr8:53148923-53148942 MsG0880045042.01.T01:intron 55.0%
CACGAGGCCTAGGAAATGGA+AGG + Chr8:53148436-53148455 MsG0880045042.01.T01:CDS 55.0%
CGGCGAGAATAACGGTATGG+AGG - Chr8:53149772-53149791 None:intergenic 55.0%
CTTGGAGATCTTCTCCCACG+CGG - Chr8:53149700-53149719 None:intergenic 55.0%
GGGCACCACTTGTGTACCAT+TGG + Chr8:53149088-53149107 MsG0880045042.01.T01:intron 55.0%
GGTTCACGAGGCCTAGGAAA+TGG + Chr8:53148432-53148451 MsG0880045042.01.T01:CDS 55.0%
GGTTCGATCCCGTGACCATT+CGG + Chr8:53147707-53147726 MsG0880045042.01.T01:intron 55.0%
TCAGGAGTTATAGCCCGCGT+GGG + Chr8:53149683-53149702 MsG0880045042.01.T01:intron 55.0%
TCTAAGAGTGGAGGAGGAGG+AGG + Chr8:53148312-53148331 MsG0880045042.01.T01:CDS 55.0%
TCTGCTGTAGCTACGACCAC+GGG - Chr8:53149743-53149762 None:intergenic 55.0%
TTGGAGATCTTCTCCCACGC+GGG - Chr8:53149699-53149718 None:intergenic 55.0%
ACGCCCGGGGAAGATTGTGA+AGG + Chr8:53148964-53148983 MsG0880045042.01.T01:intron 60.0%
AGCTCCCTCTCAGTGACTCG+AGG - Chr8:53147223-53147242 None:intergenic 60.0%
CGTAGCATAACACCTCCCCG+TGG + Chr8:53149724-53149743 MsG0880045042.01.T01:CDS 60.0%
CTCGTGAACCACCGCGTGAA+CGG - Chr8:53148422-53148441 None:intergenic 60.0%
CTGCTGTAGCTACGACCACG+GGG - Chr8:53149742-53149761 None:intergenic 60.0%
GCTCCCTCTCAGTGACTCGA+GGG - Chr8:53147222-53147241 None:intergenic 60.0%
GGACCCTCGAGTCACTGAGA+GGG + Chr8:53147216-53147235 MsG0880045042.01.T01:CDS 60.0%
TACACTCCCGCAATCCGGCA+TGG - Chr8:53148933-53148952 None:intergenic 60.0%
TCCTCCCACTCAGCCTGGAA+AGG + Chr8:53149434-53149453 MsG0880045042.01.T01:intron 60.0%
TCCTTTCCAGGCTGAGTGGG+AGG - Chr8:53149438-53149457 None:intergenic 60.0%
TGGACCCTCGAGTCACTGAG+AGG + Chr8:53147215-53147234 MsG0880045042.01.T01:CDS 60.0%
TGTTGGCCATGCCGGATTGC+GGG + Chr8:53148924-53148943 MsG0880045042.01.T01:intron 60.0%
! CACTCCCGAGCAAAGTGTCC+AGG - Chr8:53148399-53148418 None:intergenic 60.0%
CGTTCACGCGGTGGTTCACG+AGG + Chr8:53148420-53148439 MsG0880045042.01.T01:CDS 65.0%
CTGTAGCTACGACCACGGGG+AGG - Chr8:53149739-53149758 None:intergenic 65.0%
TCCAGGCTGAGTGGGAGGAC+AGG - Chr8:53149433-53149452 None:intergenic 65.0%
TGGGTTGCTCGCAGACCACC+AGG + Chr8:53148055-53148074 MsG0880045042.01.T01:CDS 65.0%
AGTGGAGGAGGAGGAGGCCG+TGG + Chr8:53148318-53148337 MsG0880045042.01.T01:CDS 70.0%
CGCGGTGGTTCACGAGGCCT+AGG + Chr8:53148426-53148445 MsG0880045042.01.T01:CDS 70.0%
GAGGAGGAGGCCGTGGTGGT+GGG + Chr8:53148325-53148344 MsG0880045042.01.T01:CDS 70.0%
GCCTGTCCTCCCACTCAGCC+TGG + Chr8:53149429-53149448 MsG0880045042.01.T01:intron 70.0%
!! GCTCGGGAGTGCCGTTCACG+CGG + Chr8:53148408-53148427 MsG0880045042.01.T01:CDS 70.0%
GGAGGAGGAGGAGGCCGTGG+TGG + Chr8:53148321-53148340 MsG0880045042.01.T01:CDS 75.0%
GGAGGAGGAGGCCGTGGTGG+TGG + Chr8:53148324-53148343 MsG0880045042.01.T01:CDS 75.0%
!! CGGGAGTGCCGTTCACGCGG+TGG + Chr8:53148411-53148430 MsG0880045042.01.T01:CDS 75.0%
! GTCCGCCGCGCCCACCACCA+CGG - Chr8:53148338-53148357 None:intergenic 80.0%
!!! GGAGGCCGTGGTGGTGGGCG+CGG + Chr8:53148330-53148349 MsG0880045042.01.T01:CDS 80.0%
! GTGGGCGCGGCGGACGCGGA+GGG + Chr8:53148343-53148362 MsG0880045042.01.T01:CDS 85.0%
! TGGGCGCGGCGGACGCGGAG+GGG + Chr8:53148344-53148363 MsG0880045042.01.T01:CDS 85.0%
!!! GGCCGTGGTGGTGGGCGCGG+CGG + Chr8:53148333-53148352 MsG0880045042.01.T01:CDS 85.0%
!!! GGTGGTGGGCGCGGCGGACG+CGG + Chr8:53148339-53148358 MsG0880045042.01.T01:CDS 85.0%
! GGTGGGCGCGGCGGACGCGG+AGG + Chr8:53148342-53148361 MsG0880045042.01.T01:CDS 90.0%
Chromosome Type Strat End Strand Name
Chr8 gene 53146967 53149822 53146967 ID=MsG0880045042.01;Name=MsG0880045042.01
Chr8 mRNA 53146967 53149822 53146967 ID=MsG0880045042.01.T01;Parent=MsG0880045042.01;Name=MsG0880045042.01.T01;_AED=0.43;_eAED=0.43;_QI=109|1|0.8|1|0.75|0.6|5|0|185
Chr8 exon 53146967 53147064 53146967 ID=MsG0880045042.01.T01:exon:22823;Parent=MsG0880045042.01.T01
Chr8 exon 53147179 53147278 53147179 ID=MsG0880045042.01.T01:exon:22824;Parent=MsG0880045042.01.T01
Chr8 exon 53148051 53148139 53148051 ID=MsG0880045042.01.T01:exon:22825;Parent=MsG0880045042.01.T01
Chr8 exon 53148277 53148520 53148277 ID=MsG0880045042.01.T01:exon:22826;Parent=MsG0880045042.01.T01
Chr8 exon 53149687 53149822 53149687 ID=MsG0880045042.01.T01:exon:22827;Parent=MsG0880045042.01.T01
Chr8 five_prime_UTR 53146967 53147064 53146967 ID=MsG0880045042.01.T01:five_prime_utr;Parent=MsG0880045042.01.T01
Chr8 five_prime_UTR 53147179 53147189 53147179 ID=MsG0880045042.01.T01:five_prime_utr;Parent=MsG0880045042.01.T01
Chr8 CDS 53147190 53147278 53147190 ID=MsG0880045042.01.T01:cds;Parent=MsG0880045042.01.T01
Chr8 CDS 53148051 53148139 53148051 ID=MsG0880045042.01.T01:cds;Parent=MsG0880045042.01.T01
Chr8 CDS 53148277 53148520 53148277 ID=MsG0880045042.01.T01:cds;Parent=MsG0880045042.01.T01
Chr8 CDS 53149687 53149822 53149687 ID=MsG0880045042.01.T01:cds;Parent=MsG0880045042.01.T01
Gene Sequence

>MsG0880045042.01.T01

ATGGCTAGGGTTTATATTGGGAATTTGGACCCTCGAGTCACTGAGAGGGAGCTTGAAGATGAATTTCGTGTGTATGGTGTTCTTCGCAGTGTCTGGGTTGCTCGCAGACCACCAGGATATGCATTTATCGAGTTTGATGATCGGAGGGACGCCCTTGATGCAATTCATGAATTGGATGGAAAAAATGGCTGGCGTGTAGAGCTTTCTCATAATTCTAAGAGTGGAGGAGGAGGAGGCCGTGGTGGTGGGCGCGGCGGACGCGGAGGGGATGACCTCAAATGCTATGAATGTGGTGAACCTGGACACTTTGCTCGGGAGTGCCGTTCACGCGGTGGTTCACGAGGCCTAGGAAATGGAAGGAGACGAAGTCCTAGTCCTTATTATCGGCGTCGTGGAAGTCCAAATTATGGTTATGATCGCAGGAGTTATAGCCCGCGTGGGAGAAGATCTCCAAGACGACGTAGCATAACACCTCCCCGTGGTCGTAGCTACAGCAGATCCCCTCCTCCATACCGTTATTCTCGCCGTGATTCACCTTATGCCAACGGGTACGATTGA

Protein sequence

>MsG0880045042.01.T01

MARVYIGNLDPRVTERELEDEFRVYGVLRSVWVARRPPGYAFIEFDDRRDALDAIHELDGKNGWRVELSHNSKSGGGGGRGGGRGGRGGDDLKCYECGEPGHFARECRSRGGSRGLGNGRRRSPSPYYRRRGSPNYGYDRRSYSPRGRRSPRRRSITPPRGRSYSRSPPPYRYSRRDSPYANGYD*